data_1C0R # _entry.id 1C0R # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1C0R pdb_00001c0r 10.2210/pdb1c0r/pdb RCSB RCSB001237 ? ? WWPDB D_1000001237 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1AA5 unspecified 'CRYSTAL STRUCTURE OF VANCOMYCIN' PDB 1C0Q unspecified 'CRYSTAL STRUCTURE OF VANCOMYCIN COMPLEXED WITH 2-ACETOXY-D-PROPANOIC ACID' PDB 1FVM unspecified 'CRYSTAL STRUCTURE OF VANCOMYCIN COMPLEXED WITH DI-ACETYL-LYS-D-ALA-D-ALA' PDB 1GAC unspecified 'SOLUTION STRUCTURE OF A82846B COMPLEXED WITH ITS CELL WALL PENTAPEPTIDE FRAGMENT' PDB 1GHG unspecified 'CRYSTAL STRUCTURE OF VANCOMYCIN AGLYCON' PDB 1PN3 unspecified 'CRYSTAL STRUCTURE OF TDP-EPI-VANCOSAMINYLTRANSFERASE GTFA COMPLEXD WITH TDP AND DESVANCOSAMINYL VANCOMYCIN' PDB 1PNV unspecified 'CRYSTAL STRUCTURE OF TDP-EPI-VANCOSAMINYLTRANSFERASE GTFA COMPLEXED WITH TDP AND VANCOMYCIN' PDB 1QD8 unspecified 'CRYSTAL STRUCTURE OF VANCOMYCIN COMPLEXED WITH N-ACETYL GLYCIN' PDB 1RRV unspecified 'CRYSTAL STRUCTURE OF TDP-VANCOSAMINYLTRANSFERASE GTFD COMPLEXED WITH TDP AND DESVANCOSAMINYL VANCOMYCIN.' PDB 1SHO unspecified 'CRYSTAL STRUCTURE OF VANCOMYCIN' # _pdbx_database_status.entry_id 1C0R _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 1999-07-20 _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Loll, P.J.' 1 'Kaplan, J.' 2 'Selinsky, B.' 3 'Axelsen, P.H.' 4 # _citation.id primary _citation.title 'Vancomycin Binding to Low-Affinity Ligands: Delineating a Minimum Set of Interactions Necessary for High-Affinity Binding.' _citation.journal_abbrev J.Med.Chem. _citation.journal_volume 42 _citation.page_first 4714 _citation.page_last ? _citation.year 1999 _citation.journal_id_ASTM JMCMAR _citation.country US _citation.journal_id_ISSN 0022-2623 _citation.journal_id_CSD 0151 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10579833 _citation.pdbx_database_id_DOI 10.1021/JM990361T # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Loll, P.J.' 1 ? primary 'Kaplan, J.' 2 ? primary 'Selinsky, B.S.' 3 ? primary 'Axelsen, P.H.' 4 ? # _cell.entry_id 1C0R _cell.length_a 28.440 _cell.length_b 28.440 _cell.length_c 66.040 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1C0R _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man VANCOMYCIN 1149.977 2 ? ? ? ? 2 branched man 'vancosamine-(1-2)-beta-D-glucopyranose' 323.340 2 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 3 ? ? ? ? 4 non-polymer syn 'LACTIC ACID' 90.078 1 ? ? ? ? 5 water nat water 18.015 45 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(MLU)(OMZ)N(GHP)(GHP)(OMY)(3FG)' _entity_poly.pdbx_seq_one_letter_code_can XXNGGYX _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MLU n 1 2 OMZ n 1 3 ASN n 1 4 GHP n 1 5 GHP n 1 6 OMY n 1 7 3FG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'AMYCOLATOPSIS ORIENTALIS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 31958 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name NOR _struct_ref.db_code NOR00681 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession NOR00681 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1C0R A 1 ? 7 ? NOR00681 1 ? 7 ? 1 7 2 1 1C0R B 1 ? 7 ? NOR00681 1 ? 7 ? 1 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3FG 'L-peptide linking' . '(2S)-amino(3,5-dihydroxyphenyl)ethanoic acid' ? 'C8 H9 N O4' 183.161 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 BGC 'D-saccharide, beta linking' . beta-D-glucopyranose 'beta-D-glucose; D-glucose; glucose' 'C6 H12 O6' 180.156 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 GHP 'D-peptide linking' . '(2R)-amino(4-hydroxyphenyl)ethanoic acid' ? 'C8 H9 N O3' 167.162 HOH non-polymer . WATER ? 'H2 O' 18.015 LAC non-polymer . 'LACTIC ACID' ? 'C3 H6 O3' 90.078 MLU 'D-peptide linking' . N-methyl-D-leucine ? 'C7 H15 N O2' 145.199 OMY 'L-peptide linking' n '(betaR)-3-chloro-beta-hydroxy-L-tyrosine' ? 'C9 H10 Cl N O4' 231.633 OMZ 'D-peptide linking' . '(betaR)-3-CHLORO-BETA-HYDROXY-D-TYROSINE' ? 'C9 H10 Cl N O4' 231.633 RER 'L-saccharide, alpha linking' . vancosamine '(1R,3S,4S,5S)-3-amino-2,3,6-trideoxy-3-methyl-alpha-L-arabino-hexopyranose' 'C7 H15 N O3' 161.199 # _exptl.entry_id 1C0R _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.90 _exptl_crystal.density_percent_sol 57.63 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'SODIUM CHLORIDE, LACTIC ACID, PH 4.6, VAPOR DIFFUSION/HANGING DROP, TEMPERATURE 291K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type CUSTOM-MADE _diffrn_detector.pdbx_collection_date 1996-09-20 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.918 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'CHESS BEAMLINE A1' _diffrn_source.pdbx_synchrotron_site CHESS _diffrn_source.pdbx_synchrotron_beamline A1 _diffrn_source.pdbx_wavelength 0.918 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1C0R _reflns.observed_criterion_sigma_I 2.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.000 _reflns.d_resolution_high 1.000 _reflns.number_obs 13896 _reflns.number_all ? _reflns.percent_possible_obs 97.0 _reflns.pdbx_Rmerge_I_obs 0.05200 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 29.8000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 16.400 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.00 _reflns_shell.d_res_low 1.04 _reflns_shell.percent_possible_all 54.0 _reflns_shell.Rmerge_I_obs 0.06500 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 1.90 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1C0R _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all 14301 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 1.00 _refine.ls_percent_reflns_obs 97.0 _refine.ls_R_factor_obs 0.114 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free 0.142 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 934 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;REFINEMENT WAS CARRIED OUT AGAINST F -SQUARED USING SHELXL-93. MOLECULAR GEOMETRY AND ATOMIC DISPLACEMENT PARAMETERS WERE RESTRAINED THROUGHOUT. INDEPENDENT VANCOMYCIN MONOMERS WERE RESTRAINED TO HAVE SIMILAR 1-2 AND 1-3 DISTANCES; RESTRAINTS WERE ALSO IMPOSED TO LIMIT DEVIATIONS FROM PLANARITY IN RINGS AND SP2 SYSTEMS. ALONG-BOND COMPONENTS OF ANISOTROPIC DISPLACEMENT PARAMETERS WERE SUBJECTED TO RESTRAINTS. SOLVENT WATER ATOMS WERE RESTRAINED TO BE APPROXIMATELY ISOTROPIC AND WERE MADE SUBJECT TO ANTI-BUMPING RESTRAINTS. CONJUGATE GRADIENT REFINEMENT WAS USED THROUGHOUT, EXCEPT AT THE LAST STAGES, WHEN BLOCKED LEAST SQUARES WAS USED. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH & HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 160 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 51 _refine_hist.number_atoms_solvent 45 _refine_hist.number_atoms_total 256 _refine_hist.d_res_high 1.00 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.019 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist ? ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes ? ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr ? ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt ? ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt ? ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps ? ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 1C0R _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff 0.114 _pdbx_refine.free_R_factor_no_cutoff 0.142 _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff 934 _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff ? # _struct.entry_id 1C0R _struct.title 'COMPLEX OF VANCOMYCIN WITH D-LACTIC ACID' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1C0R _struct_keywords.pdbx_keywords ANTIBIOTIC _struct_keywords.text 'ANTIBIOTIC, GLYCOPEPTIDE ANTIBIOTIC' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 4 ? I N N 5 ? J N N 5 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A MLU 1 C ? ? ? 1_555 A OMZ 2 N ? ? A MLU 1 A OMZ 2 1_555 ? ? ? ? ? ? ? 1.364 ? ? covale2 covale both ? A OMZ 2 C ? ? ? 1_555 A ASN 3 N ? ? A OMZ 2 A ASN 3 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale3 covale none ? A OMZ 2 OH ? ? ? 1_555 A GHP 4 C5 ? ? A OMZ 2 A GHP 4 1_555 ? ? ? ? ? ? ? 1.400 ? ? covale4 covale both ? A ASN 3 C ? ? ? 1_555 A GHP 4 N ? ? A ASN 3 A GHP 4 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale5 covale both ? A GHP 4 C ? ? ? 1_555 A GHP 5 N ? ? A GHP 4 A GHP 5 1_555 ? ? ? ? ? ? ? 1.349 ? ? covale6 covale none ? A GHP 4 C3 ? ? ? 1_555 A OMY 6 OCZ ? ? A GHP 4 A OMY 6 1_555 ? ? ? ? ? ? ? 1.383 ? ? covale7 covale one ? A GHP 4 O4 ? ? ? 1_555 C BGC . C1 ? ? A GHP 4 C BGC 1 1_555 ? ? ? ? ? ? ? 1.427 ? ? covale8 covale both ? A GHP 5 C ? ? ? 1_555 A OMY 6 N ? ? A GHP 5 A OMY 6 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale9 covale one ? A GHP 5 C3 ? ? ? 1_555 A 3FG 7 CG1 ? ? A GHP 5 A 3FG 7 1_555 ? ? ? ? ? ? ? 1.470 ? ? covale10 covale both ? A OMY 6 C ? ? ? 1_555 A 3FG 7 N ? ? A OMY 6 A 3FG 7 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale11 covale both ? B MLU 1 C ? ? ? 1_555 B OMZ 2 N ? ? B MLU 1 B OMZ 2 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale12 covale both ? B OMZ 2 C ? ? ? 1_555 B ASN 3 N ? ? B OMZ 2 B ASN 3 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale13 covale none ? B OMZ 2 OH ? ? ? 1_555 B GHP 4 C5 ? ? B OMZ 2 B GHP 4 1_555 ? ? ? ? ? ? ? 1.392 ? ? covale14 covale both ? B ASN 3 C ? ? ? 1_555 B GHP 4 N ? ? B ASN 3 B GHP 4 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale15 covale both ? B GHP 4 C ? ? ? 1_555 B GHP 5 N ? ? B GHP 4 B GHP 5 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale16 covale none ? B GHP 4 C3 ? ? ? 1_555 B OMY 6 OCZ ? ? B GHP 4 B OMY 6 1_555 ? ? ? ? ? ? ? 1.369 ? ? covale17 covale one ? B GHP 4 O4 B ? ? 1_555 D BGC . C1 B ? B GHP 4 D BGC 1 1_555 ? ? ? ? ? ? ? 1.432 ? ? covale18 covale one ? B GHP 4 O4 A ? ? 1_555 D BGC . C1 A ? B GHP 4 D BGC 1 1_555 ? ? ? ? ? ? ? 1.434 ? ? covale19 covale both ? B GHP 5 C ? ? ? 1_555 B OMY 6 N ? ? B GHP 5 B OMY 6 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale20 covale one ? B GHP 5 C3 ? ? ? 1_555 B 3FG 7 CG1 ? ? B GHP 5 B 3FG 7 1_555 ? ? ? ? ? ? ? 1.482 ? ? covale21 covale both ? B OMY 6 C ? ? ? 1_555 B 3FG 7 N ? ? B OMY 6 B 3FG 7 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale22 covale both ? C BGC . O2 ? ? ? 1_555 C RER . C1 ? ? C BGC 1 C RER 2 1_555 ? ? ? ? ? ? ? 1.425 ? ? covale23 covale both ? D BGC . O2 B ? ? 1_555 D RER . C1 ? ? D BGC 1 D RER 2 1_555 ? ? ? ? ? ? ? 1.113 ? ? covale24 covale both ? D BGC . O2 A ? ? 1_555 D RER . C1 ? ? D BGC 1 D RER 2 1_555 ? ? ? ? ? ? ? 1.477 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GHP 5 A . ? GHP 5 A OMY 6 A ? OMY 6 A 1 6.16 2 GHP 5 B . ? GHP 5 B OMY 6 B ? OMY 6 B 1 19.74 # _database_PDB_matrix.entry_id 1C0R _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1C0R _atom_sites.fract_transf_matrix[1][1] 0.035162 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.035162 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015142 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num HETATM 1 N N . MLU A 1 1 ? 10.069 8.783 -4.064 1.00 6.90 ? 1 MLU A N 1 HETATM 2 C CN . MLU A 1 1 ? 10.403 10.145 -4.714 1.00 9.50 ? 1 MLU A CN 1 HETATM 3 C CA . MLU A 1 1 ? 8.822 8.790 -3.288 1.00 6.10 ? 1 MLU A CA 1 HETATM 4 C C . MLU A 1 1 ? 7.668 9.208 -4.207 1.00 5.40 ? 1 MLU A C 1 HETATM 5 O O . MLU A 1 1 ? 7.501 8.637 -5.270 1.00 7.61 ? 1 MLU A O 1 HETATM 6 C CB . MLU A 1 1 ? 8.515 7.390 -2.735 1.00 6.28 ? 1 MLU A CB 1 HETATM 7 C CG . MLU A 1 1 ? 9.554 6.764 -1.785 1.00 6.94 ? 1 MLU A CG 1 HETATM 8 C CD1 . MLU A 1 1 ? 9.770 7.580 -0.535 1.00 11.62 ? 1 MLU A CD1 1 HETATM 9 C CD2 . MLU A 1 1 ? 9.069 5.400 -1.412 1.00 10.69 ? 1 MLU A CD2 1 HETATM 10 N N . OMZ A 1 2 ? 6.847 10.201 -3.759 1.00 4.64 ? 2 OMZ A N 1 HETATM 11 C CA . OMZ A 1 2 ? 5.785 10.692 -4.598 1.00 4.76 ? 2 OMZ A CA 1 HETATM 12 C C . OMZ A 1 2 ? 4.457 9.929 -4.453 1.00 4.38 ? 2 OMZ A C 1 HETATM 13 O O . OMZ A 1 2 ? 3.510 10.253 -5.183 1.00 5.33 ? 2 OMZ A O 1 HETATM 14 C CB . OMZ A 1 2 ? 5.488 12.229 -4.394 1.00 5.31 ? 2 OMZ A CB 1 HETATM 15 O OC . OMZ A 1 2 ? 6.692 12.973 -4.520 1.00 5.68 ? 2 OMZ A OC 1 HETATM 16 C CG . OMZ A 1 2 ? 4.835 12.491 -3.075 1.00 4.85 ? 2 OMZ A CG 1 HETATM 17 C CD1 . OMZ A 1 2 ? 3.444 12.719 -3.055 1.00 5.70 ? 2 OMZ A CD1 1 HETATM 18 C CD2 . OMZ A 1 2 ? 5.562 12.534 -1.884 1.00 5.36 ? 2 OMZ A CD2 1 HETATM 19 C CE1 . OMZ A 1 2 ? 2.785 12.880 -1.834 1.00 5.90 ? 2 OMZ A CE1 1 HETATM 20 CL CL . OMZ A 1 2 ? 1.116 13.208 -1.851 1.00 10.81 ? 2 OMZ A CL 1 HETATM 21 C CE2 . OMZ A 1 2 ? 4.877 12.687 -0.681 1.00 5.84 ? 2 OMZ A CE2 1 HETATM 22 C CZ . OMZ A 1 2 ? 3.497 12.824 -0.674 1.00 5.73 ? 2 OMZ A CZ 1 HETATM 23 O OH . OMZ A 1 2 ? 2.815 12.890 0.560 1.00 6.25 ? 2 OMZ A OH 1 ATOM 24 N N . ASN A 1 3 ? 4.412 8.934 -3.581 1.00 4.40 ? 3 ASN A N 1 ATOM 25 C CA . ASN A 1 3 ? 3.289 7.979 -3.557 1.00 4.04 ? 3 ASN A CA 1 ATOM 26 C C . ASN A 1 3 ? 2.259 8.259 -2.479 1.00 3.85 ? 3 ASN A C 1 ATOM 27 O O . ASN A 1 3 ? 1.137 8.662 -2.814 1.00 4.64 ? 3 ASN A O 1 ATOM 28 C CB . ASN A 1 3 ? 3.802 6.549 -3.650 1.00 4.52 ? 3 ASN A CB 1 ATOM 29 C CG . ASN A 1 3 ? 4.897 6.208 -2.637 1.00 4.87 ? 3 ASN A CG 1 ATOM 30 O OD1 . ASN A 1 3 ? 5.205 6.960 -1.693 1.00 4.86 ? 3 ASN A OD1 1 ATOM 31 N ND2 . ASN A 1 3 ? 5.532 5.066 -2.884 1.00 5.76 ? 3 ASN A ND2 1 HETATM 32 N N . GHP A 1 4 ? 2.640 8.072 -1.211 1.00 4.04 ? 4 GHP A N 1 HETATM 33 C CA . GHP A 1 4 ? 1.692 8.095 -0.108 1.00 3.95 ? 4 GHP A CA 1 HETATM 34 C C . GHP A 1 4 ? 1.863 6.843 0.727 1.00 3.87 ? 4 GHP A C 1 HETATM 35 O O . GHP A 1 4 ? 2.977 6.437 1.045 1.00 4.54 ? 4 GHP A O 1 HETATM 36 C C1 . GHP A 1 4 ? 1.696 9.346 0.733 1.00 4.29 ? 4 GHP A C1 1 HETATM 37 C C2 . GHP A 1 4 ? 1.106 9.392 1.977 1.00 4.41 ? 4 GHP A C2 1 HETATM 38 C C3 . GHP A 1 4 ? 1.118 10.555 2.758 1.00 5.03 ? 4 GHP A C3 1 HETATM 39 C C4 . GHP A 1 4 ? 1.661 11.709 2.246 1.00 5.45 ? 4 GHP A C4 1 HETATM 40 O O4 . GHP A 1 4 ? 1.775 12.896 2.999 1.00 6.11 ? 4 GHP A O4 1 HETATM 41 C C5 . GHP A 1 4 ? 2.235 11.689 0.987 1.00 5.27 ? 4 GHP A C5 1 HETATM 42 C C6 . GHP A 1 4 ? 2.258 10.511 0.229 1.00 4.56 ? 4 GHP A C6 1 HETATM 43 N N . GHP A 1 5 ? 0.725 6.269 1.168 1.00 3.99 ? 5 GHP A N 1 HETATM 44 C CA . GHP A 1 5 ? 0.702 5.366 2.248 1.00 4.11 ? 5 GHP A CA 1 HETATM 45 C C . GHP A 1 5 ? -0.714 5.455 2.920 1.00 4.24 ? 5 GHP A C 1 HETATM 46 O O . GHP A 1 5 ? -1.645 5.836 2.187 1.00 5.13 ? 5 GHP A O 1 HETATM 47 C C1 . GHP A 1 5 ? 0.896 3.864 2.008 1.00 4.29 ? 5 GHP A C1 1 HETATM 48 C C2 . GHP A 1 5 ? 1.920 3.187 2.682 1.00 4.23 ? 5 GHP A C2 1 HETATM 49 C C3 . GHP A 1 5 ? 1.980 1.792 2.728 1.00 5.03 ? 5 GHP A C3 1 HETATM 50 C C4 . GHP A 1 5 ? 1.021 1.076 2.005 1.00 4.93 ? 5 GHP A C4 1 HETATM 51 O O4 . GHP A 1 5 ? 1.072 -0.310 2.079 1.00 6.53 ? 5 GHP A O4 1 HETATM 52 C C5 . GHP A 1 5 ? 0.068 1.737 1.274 1.00 5.43 ? 5 GHP A C5 1 HETATM 53 C C6 . GHP A 1 5 ? 0.004 3.118 1.234 1.00 4.76 ? 5 GHP A C6 1 HETATM 54 N N . OMY A 1 6 ? -0.863 5.049 4.180 1.00 4.33 ? 6 OMY A N 1 HETATM 55 C CA . OMY A 1 6 ? 0.135 4.630 5.096 1.00 4.63 ? 6 OMY A CA 1 HETATM 56 O OCZ . OMY A 1 6 ? 0.605 10.620 4.041 1.00 5.87 ? 6 OMY A OCZ 1 HETATM 57 C CE2 . OMY A 1 6 ? -0.777 8.983 5.074 1.00 5.07 ? 6 OMY A CE2 1 HETATM 58 C CE1 . OMY A 1 6 ? 1.615 8.645 5.056 1.00 5.33 ? 6 OMY A CE1 1 HETATM 59 C CZ . OMY A 1 6 ? 0.478 9.407 4.730 1.00 5.14 ? 6 OMY A CZ 1 HETATM 60 C CG . OMY A 1 6 ? 0.153 6.927 5.960 1.00 4.95 ? 6 OMY A CG 1 HETATM 61 C CD2 . OMY A 1 6 ? -0.939 7.721 5.689 1.00 4.86 ? 6 OMY A CD2 1 HETATM 62 C CD1 . OMY A 1 6 ? 1.447 7.434 5.686 1.00 5.25 ? 6 OMY A CD1 1 HETATM 63 C CB . OMY A 1 6 ? 0.041 5.492 6.410 1.00 5.00 ? 6 OMY A CB 1 HETATM 64 CL CL . OMY A 1 6 ? 3.230 9.189 4.722 1.00 7.45 ? 6 OMY A CL 1 HETATM 65 O O . OMY A 1 6 ? -1.003 2.503 5.241 1.00 6.22 ? 6 OMY A O 1 HETATM 66 C C . OMY A 1 6 ? 0.059 3.114 5.351 1.00 4.61 ? 6 OMY A C 1 HETATM 67 O ODE . OMY A 1 6 ? -1.195 5.249 7.038 1.00 5.81 ? 6 OMY A ODE 1 HETATM 68 N N . 3FG A 1 7 ? 1.214 2.514 5.605 1.00 4.87 ? 7 3FG A N 1 HETATM 69 O OD1 . 3FG A 1 7 ? 4.679 1.253 1.806 1.00 5.25 ? 7 3FG A OD1 1 HETATM 70 C CD1 . 3FG A 1 7 ? 4.305 0.894 3.054 1.00 4.84 ? 7 3FG A CD1 1 HETATM 71 C CG1 . 3FG A 1 7 ? 3.016 1.132 3.536 1.00 4.51 ? 7 3FG A CG1 1 HETATM 72 C CZ . 3FG A 1 7 ? 5.281 0.269 3.850 1.00 4.65 ? 7 3FG A CZ 1 HETATM 73 C CD2 . 3FG A 1 7 ? 4.974 -0.111 5.141 1.00 5.02 ? 7 3FG A CD2 1 HETATM 74 O OD2 . 3FG A 1 7 ? 5.864 -0.698 5.992 1.00 5.95 ? 7 3FG A OD2 1 HETATM 75 C CG2 . 3FG A 1 7 ? 3.701 0.124 5.657 1.00 5.42 ? 7 3FG A CG2 1 HETATM 76 C CB . 3FG A 1 7 ? 2.724 0.749 4.876 1.00 5.19 ? 7 3FG A CB 1 HETATM 77 C CA . 3FG A 1 7 ? 1.354 1.061 5.463 1.00 5.48 ? 7 3FG A CA 1 HETATM 78 C C . 3FG A 1 7 ? 1.069 0.290 6.780 1.00 6.57 ? 7 3FG A C 1 HETATM 79 O O . 3FG A 1 7 ? 1.141 0.934 7.876 1.00 7.98 ? 7 3FG A O 1 HETATM 80 O OXT . 3FG A 1 7 ? 0.811 -0.927 6.629 1.00 7.97 ? 7 3FG A OXT 1 HETATM 81 N N . MLU B 1 1 ? -13.035 5.858 5.897 1.00 7.12 ? 1 MLU B N 1 HETATM 82 C CN . MLU B 1 1 ? -13.338 6.419 7.262 1.00 8.09 ? 1 MLU B CN 1 HETATM 83 C CA . MLU B 1 1 ? -11.694 6.210 5.374 1.00 7.47 ? 1 MLU B CA 1 HETATM 84 C C . MLU B 1 1 ? -10.680 5.641 6.381 1.00 6.98 ? 1 MLU B C 1 HETATM 85 O O . MLU B 1 1 ? -10.904 4.547 6.923 1.00 8.18 ? 1 MLU B O 1 HETATM 86 C CB . MLU B 1 1 ? -11.481 5.470 4.056 1.00 10.23 ? 1 MLU B CB 1 HETATM 87 C CG . MLU B 1 1 ? -12.415 5.795 2.911 1.00 10.91 ? 1 MLU B CG 1 HETATM 88 C CD1 . MLU B 1 1 ? -12.377 7.254 2.545 1.00 15.34 ? 1 MLU B CD1 1 HETATM 89 C CD2 . MLU B 1 1 ? -12.199 4.973 1.725 1.00 12.50 ? 1 MLU B CD2 1 HETATM 90 N N . OMZ B 1 2 ? -9.589 6.381 6.622 1.00 6.71 ? 2 OMZ B N 1 HETATM 91 C CA . OMZ B 1 2 ? -8.679 5.972 7.669 1.00 6.45 ? 2 OMZ B CA 1 HETATM 92 C C . OMZ B 1 2 ? -7.316 5.484 7.113 1.00 6.00 ? 2 OMZ B C 1 HETATM 93 O O . OMZ B 1 2 ? -6.505 4.999 7.902 1.00 6.81 ? 2 OMZ B O 1 HETATM 94 C CB . OMZ B 1 2 ? -8.469 7.066 8.775 1.00 7.21 ? 2 OMZ B CB 1 HETATM 95 O OC . OMZ B 1 2 ? -9.823 7.382 9.125 1.00 8.97 ? 2 OMZ B OC 1 HETATM 96 C CG . OMZ B 1 2 ? -7.678 8.235 8.264 1.00 6.36 ? 2 OMZ B CG 1 HETATM 97 C CD1 . OMZ B 1 2 ? -6.279 8.238 8.415 1.00 5.50 ? 2 OMZ B CD1 1 HETATM 98 C CD2 . OMZ B 1 2 ? -8.273 9.249 7.529 1.00 7.14 ? 2 OMZ B CD2 1 HETATM 99 C CE1 . OMZ B 1 2 ? -5.526 9.217 7.792 1.00 5.20 ? 2 OMZ B CE1 1 HETATM 100 CL CL . OMZ B 1 2 ? -3.797 9.187 7.965 1.00 7.60 ? 2 OMZ B CL 1 HETATM 101 C CE2 . OMZ B 1 2 ? -7.504 10.240 6.896 1.00 6.60 ? 2 OMZ B CE2 1 HETATM 102 C CZ . OMZ B 1 2 ? -6.121 10.190 6.997 1.00 5.49 ? 2 OMZ B CZ 1 HETATM 103 O OH . OMZ B 1 2 ? -5.369 11.102 6.282 1.00 6.10 ? 2 OMZ B OH 1 ATOM 104 N N . ASN B 1 3 ? -7.136 5.557 5.806 1.00 5.86 ? 3 ASN B N 1 ATOM 105 C CA . ASN B 1 3 ? -6.031 4.837 5.123 1.00 5.86 ? 3 ASN B CA 1 ATOM 106 C C . ASN B 1 3 ? -4.941 5.747 4.586 1.00 5.24 ? 3 ASN B C 1 ATOM 107 O O . ASN B 1 3 ? -3.767 5.596 4.927 1.00 6.51 ? 3 ASN B O 1 ATOM 108 C CB . ASN B 1 3 ? -6.611 3.949 4.036 1.00 8.50 ? 3 ASN B CB 1 ATOM 109 C CG . ASN B 1 3 ? -7.774 3.085 4.481 1.00 11.71 ? 3 ASN B CG 1 ATOM 110 O OD1 . ASN B 1 3 ? -8.796 2.918 3.683 1.00 16.51 ? 3 ASN B OD1 1 ATOM 111 N ND2 . ASN B 1 3 ? -7.678 2.532 5.619 1.00 14.31 ? 3 ASN B ND2 1 HETATM 112 N N . GHP B 1 4 ? -5.323 6.678 3.703 1.00 4.81 ? 4 GHP B N 1 HETATM 113 C CA . GHP B 1 4 ? -4.380 7.519 2.973 1.00 4.48 ? 4 GHP B CA 1 HETATM 114 C C . GHP B 1 4 ? -4.670 7.474 1.491 1.00 4.76 ? 4 GHP B C 1 HETATM 115 O O . GHP B 1 4 ? -5.825 7.695 1.055 1.00 6.10 ? 4 GHP B O 1 HETATM 116 C C1 . GHP B 1 4 ? -4.361 8.965 3.447 1.00 4.90 ? 4 GHP B C1 1 HETATM 117 C C2 . GHP B 1 4 ? -3.791 9.935 2.639 1.00 6.40 ? 4 GHP B C2 1 HETATM 118 C C3 . GHP B 1 4 ? -3.812 11.270 3.017 1.00 7.07 ? 4 GHP B C3 1 HETATM 119 C C4 . GHP B 1 4 ? -4.304 11.630 4.253 1.00 6.99 ? 4 GHP B C4 1 HETATM 120 O O4 A GHP B 1 4 ? -4.468 12.973 4.596 0.65 6.29 ? 4 GHP B O4 1 HETATM 121 O O4 B GHP B 1 4 ? -3.823 12.986 4.766 0.35 5.72 ? 4 GHP B O4 1 HETATM 122 C C5 . GHP B 1 4 ? -4.856 10.665 5.064 1.00 5.70 ? 4 GHP B C5 1 HETATM 123 C C6 . GHP B 1 4 ? -4.901 9.323 4.655 1.00 5.43 ? 4 GHP B C6 1 HETATM 124 N N . GHP B 1 5 ? -3.616 7.252 0.698 1.00 4.57 ? 5 GHP B N 1 HETATM 125 C CA . GHP B 1 5 ? -3.589 7.533 -0.711 1.00 4.74 ? 5 GHP B CA 1 HETATM 126 C C . GHP B 1 5 ? -2.178 8.148 -1.003 1.00 4.49 ? 5 GHP B C 1 HETATM 127 O O . GHP B 1 5 ? -1.289 7.927 -0.141 1.00 5.24 ? 5 GHP B O 1 HETATM 128 C C1 . GHP B 1 5 ? -3.688 6.345 -1.652 1.00 4.95 ? 5 GHP B C1 1 HETATM 129 C C2 . GHP B 1 5 ? -4.614 6.376 -2.714 1.00 5.76 ? 5 GHP B C2 1 HETATM 130 C C3 . GHP B 1 5 ? -4.596 5.423 -3.724 1.00 6.23 ? 5 GHP B C3 1 HETATM 131 C C4 . GHP B 1 5 ? -3.652 4.363 -3.616 1.00 6.14 ? 5 GHP B C4 1 HETATM 132 O O4 . GHP B 1 5 ? -3.696 3.417 -4.613 1.00 7.54 ? 5 GHP B O4 1 HETATM 133 C C5 . GHP B 1 5 ? -2.829 4.270 -2.541 1.00 5.94 ? 5 GHP B C5 1 HETATM 134 C C6 . GHP B 1 5 ? -2.821 5.283 -1.583 1.00 5.42 ? 5 GHP B C6 1 HETATM 135 N N . OMY B 1 6 ? -1.924 8.738 -2.162 1.00 4.69 ? 6 OMY B N 1 HETATM 136 C CA . OMY B 1 6 ? -2.878 9.255 -3.100 1.00 4.85 ? 6 OMY B CA 1 HETATM 137 O OCZ . OMY B 1 6 ? -3.301 12.268 2.232 1.00 8.76 ? 6 OMY B OCZ 1 HETATM 138 C CE2 . OMY B 1 6 ? -1.885 11.867 0.326 1.00 6.95 ? 6 OMY B CE2 1 HETATM 139 C CE1 . OMY B 1 6 ? -4.284 11.844 0.063 1.00 7.98 ? 6 OMY B CE1 1 HETATM 140 C CZ . OMY B 1 6 ? -3.158 11.987 0.859 1.00 6.90 ? 6 OMY B CZ 1 HETATM 141 C CG . OMY B 1 6 ? -2.882 11.341 -1.823 1.00 5.68 ? 6 OMY B CG 1 HETATM 142 C CD2 . OMY B 1 6 ? -1.739 11.537 -1.032 1.00 5.91 ? 6 OMY B CD2 1 HETATM 143 C CD1 . OMY B 1 6 ? -4.155 11.520 -1.266 1.00 6.52 ? 6 OMY B CD1 1 HETATM 144 C CB . OMY B 1 6 ? -2.767 10.794 -3.230 1.00 5.51 ? 6 OMY B CB 1 HETATM 145 CL CL . OMY B 1 6 ? -5.918 12.035 0.677 1.00 11.35 ? 6 OMY B CL 1 HETATM 146 O O . OMY B 1 6 ? -1.646 8.124 -4.833 1.00 4.97 ? 6 OMY B O 1 HETATM 147 C C . OMY B 1 6 ? -2.759 8.506 -4.430 1.00 5.09 ? 6 OMY B C 1 HETATM 148 O ODE . OMY B 1 6 ? -1.518 11.117 -3.841 1.00 5.82 ? 6 OMY B ODE 1 HETATM 149 N N . 3FG B 1 7 ? -3.893 8.181 -5.035 1.00 6.01 ? 7 3FG B N 1 HETATM 150 O OD1 . 3FG B 1 7 ? -6.969 3.993 -3.774 1.00 10.08 ? 7 3FG B OD1 1 HETATM 151 C CD1 . 3FG B 1 7 ? -6.752 4.804 -4.808 1.00 8.49 ? 7 3FG B CD1 1 HETATM 152 C CG1 . 3FG B 1 7 ? -5.540 5.555 -4.859 1.00 7.43 ? 7 3FG B CG1 1 HETATM 153 C CZ . 3FG B 1 7 ? -7.685 4.940 -5.818 1.00 9.87 ? 7 3FG B CZ 1 HETATM 154 C CD2 . 3FG B 1 7 ? -7.459 5.801 -6.908 1.00 9.60 ? 7 3FG B CD2 1 HETATM 155 O OD2 . 3FG B 1 7 ? -8.383 5.891 -7.890 1.00 14.29 ? 7 3FG B OD2 1 HETATM 156 C CG2 . 3FG B 1 7 ? -6.274 6.505 -6.962 1.00 9.22 ? 7 3FG B CG2 1 HETATM 157 C CB . 3FG B 1 7 ? -5.298 6.392 -5.958 1.00 7.33 ? 7 3FG B CB 1 HETATM 158 C CA . 3FG B 1 7 ? -3.973 7.160 -6.081 1.00 7.32 ? 7 3FG B CA 1 HETATM 159 C C . 3FG B 1 7 ? -3.758 7.868 -7.493 1.00 9.75 ? 7 3FG B C 1 HETATM 160 O O . 3FG B 1 7 ? -4.088 9.051 -7.622 1.00 14.32 ? 7 3FG B O 1 HETATM 161 O OXT . 3FG B 1 7 ? -3.389 7.070 -8.346 1.00 12.56 ? 7 3FG B OXT 1 HETATM 162 C C2 . BGC C 2 . ? 0.746 14.583 4.298 1.00 8.61 ? 1 BGC C C2 1 HETATM 163 C C3 . BGC C 2 . ? -0.533 15.380 4.544 1.00 10.31 ? 1 BGC C C3 1 HETATM 164 C C4 . BGC C 2 . ? -0.989 16.008 3.237 1.00 10.15 ? 1 BGC C C4 1 HETATM 165 C C5 . BGC C 2 . ? -1.092 14.869 2.106 1.00 10.41 ? 1 BGC C C5 1 HETATM 166 C C6 . BGC C 2 . ? -1.359 15.409 0.695 1.00 12.16 ? 1 BGC C C6 1 HETATM 167 C C1 . BGC C 2 . ? 0.548 13.574 3.264 1.00 7.01 ? 1 BGC C C1 1 HETATM 168 O O2 . BGC C 2 . ? 1.142 13.982 5.533 1.00 8.99 ? 1 BGC C O2 1 HETATM 169 O O3 . BGC C 2 . ? -0.297 16.425 5.535 1.00 13.64 ? 1 BGC C O3 1 HETATM 170 O O4 . BGC C 2 . ? -2.277 16.533 3.413 1.00 13.83 ? 1 BGC C O4 1 HETATM 171 O O5 . BGC C 2 . ? 0.170 14.189 2.041 1.00 8.24 ? 1 BGC C O5 1 HETATM 172 O O6 . BGC C 2 . ? -0.545 16.391 0.363 1.00 15.07 ? 1 BGC C O6 1 HETATM 173 C C1 . RER C 2 . ? 2.249 14.579 6.203 1.00 9.99 ? 2 RER C C1 1 HETATM 174 C C2 . RER C 2 . ? 2.263 14.044 7.606 1.00 10.14 ? 2 RER C C2 1 HETATM 175 C C3 . RER C 2 . ? 2.894 12.639 7.637 1.00 9.57 ? 2 RER C C3 1 HETATM 176 N N3 . RER C 2 . ? 3.224 12.363 9.105 1.00 11.84 ? 2 RER C N3 1 HETATM 177 C C3A . RER C 2 . ? 1.962 11.554 7.199 1.00 9.33 ? 2 RER C C3A 1 HETATM 178 C C4 . RER C 2 . ? 4.178 12.644 6.823 1.00 10.97 ? 2 RER C C4 1 HETATM 179 O O4 . RER C 2 . ? 4.994 13.652 7.532 1.00 12.16 ? 2 RER C O4 1 HETATM 180 C C5 . RER C 2 . ? 3.910 13.084 5.399 1.00 10.91 ? 2 RER C C5 1 HETATM 181 O O5 . RER C 2 . ? 3.397 14.425 5.460 1.00 11.67 ? 2 RER C O5 1 HETATM 182 C C5A . RER C 2 . ? 5.090 13.136 4.464 1.00 13.36 ? 2 RER C C5A 1 HETATM 183 C C2 A BGC D 2 . ? -5.469 14.898 5.480 0.65 6.59 ? 1 BGC D C2 1 HETATM 184 C C2 B BGC D 2 . ? -4.665 15.080 5.498 0.35 6.56 ? 1 BGC D C2 1 HETATM 185 C C3 A BGC D 2 . ? -6.641 15.888 5.401 0.65 7.85 ? 1 BGC D C3 1 HETATM 186 C C3 B BGC D 2 . ? -5.736 16.197 5.276 0.35 7.57 ? 1 BGC D C3 1 HETATM 187 C C4 A BGC D 2 . ? -7.231 16.014 4.007 0.65 8.96 ? 1 BGC D C4 1 HETATM 188 C C4 B BGC D 2 . ? -5.915 16.452 3.798 0.35 8.52 ? 1 BGC D C4 1 HETATM 189 C C5 A BGC D 2 . ? -7.516 14.551 3.430 0.65 8.69 ? 1 BGC D C5 1 HETATM 190 C C5 B BGC D 2 . ? -6.258 15.061 3.064 0.35 8.80 ? 1 BGC D C5 1 HETATM 191 C C6 A BGC D 2 . ? -8.137 14.487 2.084 0.65 9.59 ? 1 BGC D C6 1 HETATM 192 C C6 B BGC D 2 . ? -6.605 15.179 1.582 0.35 9.59 ? 1 BGC D C6 1 HETATM 193 C C1 A BGC D 2 . ? -5.735 13.625 4.755 0.65 6.77 ? 1 BGC D C1 1 HETATM 194 C C1 B BGC D 2 . ? -4.912 13.909 4.658 0.35 6.41 ? 1 BGC D C1 1 HETATM 195 O O2 A BGC D 2 . ? -5.206 14.622 6.858 0.65 6.89 ? 1 BGC D O2 1 HETATM 196 O O2 B BGC D 2 . ? -4.798 14.714 6.882 0.35 7.80 ? 1 BGC D O2 1 HETATM 197 O O3 A BGC D 2 . ? -6.134 17.207 5.761 0.65 8.29 ? 1 BGC D O3 1 HETATM 198 O O3 B BGC D 2 . ? -5.242 17.392 5.957 0.35 6.98 ? 1 BGC D O3 1 HETATM 199 O O4 A BGC D 2 . ? -8.417 16.750 4.031 0.65 10.08 ? 1 BGC D O4 1 HETATM 200 O O4 B BGC D 2 . ? -7.000 17.367 3.591 0.35 9.91 ? 1 BGC D O4 1 HETATM 201 O O5 A BGC D 2 . ? -6.228 13.879 3.418 0.65 7.12 ? 1 BGC D O5 1 HETATM 202 O O5 B BGC D 2 . ? -5.040 14.212 3.296 0.35 7.64 ? 1 BGC D O5 1 HETATM 203 O O6 A BGC D 2 . ? -8.631 13.316 1.660 0.65 11.76 ? 1 BGC D O6 1 HETATM 204 O O6 B BGC D 2 . ? -7.867 15.309 1.318 0.35 12.44 ? 1 BGC D O6 1 HETATM 205 C C1 . RER D 2 . ? -3.984 15.090 7.542 1.00 7.05 ? 2 RER D C1 1 HETATM 206 C C2 . RER D 2 . ? -4.253 15.023 9.060 1.00 6.60 ? 2 RER D C2 1 HETATM 207 C C3 . RER D 2 . ? -4.219 13.550 9.589 1.00 5.23 ? 2 RER D C3 1 HETATM 208 N N3 . RER D 2 . ? -4.154 13.619 11.092 1.00 5.46 ? 2 RER D N3 1 HETATM 209 C C3A . RER D 2 . ? -5.468 12.805 9.218 1.00 5.28 ? 2 RER D C3A 1 HETATM 210 C C4 . RER D 2 . ? -2.942 12.888 9.069 1.00 6.14 ? 2 RER D C4 1 HETATM 211 O O4 . RER D 2 . ? -1.834 13.537 9.720 1.00 7.34 ? 2 RER D O4 1 HETATM 212 C C5 . RER D 2 . ? -2.870 12.990 7.534 1.00 6.91 ? 2 RER D C5 1 HETATM 213 O O5 . RER D 2 . ? -2.827 14.375 7.179 1.00 7.95 ? 2 RER D O5 1 HETATM 214 C C5A . RER D 2 . ? -1.612 12.347 6.989 1.00 7.80 ? 2 RER D C5A 1 HETATM 215 CL CL . CL E 3 . ? 0.253 11.398 10.472 1.00 10.56 ? 20 CL A CL 1 HETATM 216 CL CL . CL F 3 . ? 3.746 4.402 5.692 1.00 6.48 ? 21 CL A CL 1 HETATM 217 CL CL . CL G 3 . ? -6.379 9.532 -3.563 1.00 13.87 ? 22 CL B CL 1 HETATM 218 C C . LAC H 4 . ? -8.832 8.198 3.762 1.00 11.47 ? 23 LAC B C 1 HETATM 219 C CA . LAC H 4 . ? -8.829 9.166 2.621 1.00 12.73 ? 23 LAC B CA 1 HETATM 220 C CB . LAC H 4 . ? -8.103 10.428 3.005 1.00 13.74 ? 23 LAC B CB 1 HETATM 221 O O . LAC H 4 . ? -8.216 7.106 3.582 1.00 10.49 ? 23 LAC B O 1 HETATM 222 O OHN . LAC H 4 . ? -8.407 8.637 1.412 1.00 14.62 ? 23 LAC B OHN 1 HETATM 223 O OXT . LAC H 4 . ? -9.552 8.504 4.759 1.00 10.39 ? 23 LAC B OXT 1 HETATM 224 O O . HOH I 5 . ? 12.638 8.513 -2.820 1.00 15.99 ? 2001 HOH A O 1 HETATM 225 O O . HOH I 5 . ? 10.385 7.096 -6.183 1.00 9.21 ? 2002 HOH A O 1 HETATM 226 O O . HOH I 5 . ? 10.368 13.781 -3.371 1.00 24.71 ? 2003 HOH A O 1 HETATM 227 O O A HOH I 5 . ? 6.453 15.046 1.583 0.60 24.94 ? 2004 HOH A O 1 HETATM 228 O O B HOH I 5 . ? 8.094 13.725 0.525 0.40 11.67 ? 2005 HOH A O 1 HETATM 229 O O . HOH I 5 . ? 8.195 12.081 -6.633 1.00 14.29 ? 2006 HOH A O 1 HETATM 230 O O . HOH I 5 . ? 8.992 11.892 -1.642 1.00 10.01 ? 2007 HOH A O 1 HETATM 231 O O . HOH I 5 . ? 3.477 15.399 1.815 1.00 29.64 ? 2008 HOH A O 1 HETATM 232 O O . HOH I 5 . ? 9.522 14.735 -5.719 1.00 22.66 ? 2009 HOH A O 1 HETATM 233 O O . HOH I 5 . ? -6.155 3.914 0.449 1.00 32.00 ? 2010 HOH A O 1 HETATM 234 O O . HOH I 5 . ? 9.161 14.282 5.399 1.00 36.49 ? 2011 HOH A O 1 HETATM 235 O O . HOH I 5 . ? 3.644 3.644 0.000 0.50 7.10 ? 2012 HOH A O 1 HETATM 236 O O . HOH I 5 . ? -3.761 3.899 1.867 1.00 10.82 ? 2013 HOH A O 1 HETATM 237 O O . HOH I 5 . ? -0.824 -1.842 1.044 1.00 21.41 ? 2014 HOH A O 1 HETATM 238 O O . HOH I 5 . ? -3.236 2.055 3.655 1.00 19.31 ? 2015 HOH A O 1 HETATM 239 O O . HOH I 5 . ? -0.467 3.101 8.668 1.00 13.46 ? 2016 HOH A O 1 HETATM 240 O O . HOH I 5 . ? -3.014 2.338 7.569 1.00 31.41 ? 2017 HOH A O 1 HETATM 241 O O . HOH I 5 . ? 5.400 0.472 8.846 1.00 16.70 ? 2018 HOH A O 1 HETATM 242 O O . HOH I 5 . ? 3.447 2.611 8.373 1.00 11.10 ? 2019 HOH A O 1 HETATM 243 O O . HOH I 5 . ? 0.776 -0.201 10.312 1.00 24.16 ? 2020 HOH A O 1 HETATM 244 O O . HOH I 5 . ? -0.557 15.908 8.255 1.00 16.57 ? 2021 HOH A O 1 HETATM 245 O O . HOH I 5 . ? 1.981 18.270 5.937 1.00 36.42 ? 2022 HOH A O 1 HETATM 246 O O . HOH I 5 . ? 4.883 14.184 10.646 1.00 21.42 ? 2023 HOH A O 1 HETATM 247 O O . HOH I 5 . ? 7.568 13.085 7.188 1.00 20.33 ? 2024 HOH A O 1 HETATM 248 O O . HOH I 5 . ? 4.270 16.940 4.231 1.00 25.34 ? 2025 HOH A O 1 HETATM 249 O O . HOH J 5 . ? -3.800 5.162 8.009 1.00 11.68 ? 2001 HOH B O 1 HETATM 250 O O . HOH J 5 . ? -9.551 10.035 -7.805 1.00 51.10 ? 2002 HOH B O 1 HETATM 251 O O . HOH J 5 . ? -5.487 1.467 6.830 1.00 32.33 ? 2003 HOH B O 1 HETATM 252 O O . HOH J 5 . ? -7.065 10.962 -6.336 1.00 61.17 ? 2004 HOH B O 1 HETATM 253 O O . HOH J 5 . ? -9.203 2.013 -9.411 1.00 80.53 ? 2005 HOH B O 1 HETATM 254 O O B HOH J 5 . ? -7.370 8.081 -1.120 0.85 27.24 ? 2006 HOH B O 1 HETATM 255 O O . HOH J 5 . ? -2.124 1.281 -4.276 1.00 8.78 ? 2007 HOH B O 1 HETATM 256 O O . HOH J 5 . ? -1.815 13.837 -4.085 1.00 18.06 ? 2008 HOH B O 1 HETATM 257 O O . HOH J 5 . ? -9.344 2.714 -3.639 1.00 18.91 ? 2009 HOH B O 1 HETATM 258 O O . HOH J 5 . ? -10.541 4.042 -7.541 1.00 28.92 ? 2010 HOH B O 1 HETATM 259 O O . HOH J 5 . ? -3.626 4.113 -7.816 1.00 47.70 ? 2011 HOH B O 1 HETATM 260 O O A HOH J 5 . ? -6.249 9.420 -9.531 0.60 29.05 ? 2012 HOH B O 1 HETATM 261 O O B HOH J 5 . ? -7.557 7.646 -9.844 0.40 23.06 ? 2013 HOH B O 1 HETATM 262 O O . HOH J 5 . ? -10.874 12.717 4.047 1.00 26.77 ? 2014 HOH B O 1 HETATM 263 O O . HOH J 5 . ? -3.013 18.420 5.232 1.00 29.38 ? 2015 HOH B O 1 HETATM 264 O O . HOH J 5 . ? -10.475 16.115 6.046 1.00 40.73 ? 2016 HOH B O 1 HETATM 265 O O A HOH J 5 . ? -4.062 15.613 1.437 1.00 33.80 ? 2017 HOH B O 1 HETATM 266 O O . HOH J 5 . ? -8.471 5.265 1.132 1.00 23.24 ? 2018 HOH B O 1 HETATM 267 O O . HOH J 5 . ? -10.985 10.623 5.465 1.00 16.80 ? 2019 HOH B O 1 HETATM 268 O O A HOH J 5 . ? -9.501 6.254 -0.948 0.15 9.96 ? 2020 HOH B O 1 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MLU 1 1 1 MLU MLU A . n A 1 2 OMZ 2 2 2 OMZ OMZ A . n A 1 3 ASN 3 3 3 ASN ASN A . n A 1 4 GHP 4 4 4 GHP GHP A . n A 1 5 GHP 5 5 5 GHP GHP A . n A 1 6 OMY 6 6 6 OMY OMY A . n A 1 7 3FG 7 7 7 3FG 3FG A . n B 1 1 MLU 1 1 1 MLU MLU B . n B 1 2 OMZ 2 2 2 OMZ OMZ B . n B 1 3 ASN 3 3 3 ASN ASN B . n B 1 4 GHP 4 4 4 GHP GHP B . n B 1 5 GHP 5 5 5 GHP GHP B . n B 1 6 OMY 6 6 6 OMY OMY B . n B 1 7 3FG 7 7 7 3FG 3FG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CL 1 20 20 CL CL A . F 3 CL 1 21 21 CL CL A . G 3 CL 1 22 22 CL CL B . H 4 LAC 1 23 23 LAC LAC B . I 5 HOH 1 2001 2001 HOH HOH A . I 5 HOH 2 2002 2002 HOH HOH A . I 5 HOH 3 2003 2003 HOH HOH A . I 5 HOH 4 2004 2004 HOH HOH A . I 5 HOH 5 2005 2005 HOH HOH A . I 5 HOH 6 2006 2006 HOH HOH A . I 5 HOH 7 2007 2007 HOH HOH A . I 5 HOH 8 2008 2008 HOH HOH A . I 5 HOH 9 2009 2009 HOH HOH A . I 5 HOH 10 2010 2010 HOH HOH A . I 5 HOH 11 2011 2011 HOH HOH A . I 5 HOH 12 2012 2012 HOH HOH A . I 5 HOH 13 2013 2013 HOH HOH A . I 5 HOH 14 2014 2014 HOH HOH A . I 5 HOH 15 2015 2015 HOH HOH A . I 5 HOH 16 2016 2016 HOH HOH A . I 5 HOH 17 2017 2017 HOH HOH A . I 5 HOH 18 2018 2018 HOH HOH A . I 5 HOH 19 2019 2019 HOH HOH A . I 5 HOH 20 2020 2020 HOH HOH A . I 5 HOH 21 2021 2021 HOH HOH A . I 5 HOH 22 2022 2022 HOH HOH A . I 5 HOH 23 2023 2023 HOH HOH A . I 5 HOH 24 2024 2024 HOH HOH A . I 5 HOH 25 2025 2025 HOH HOH A . J 5 HOH 1 2001 2001 HOH HOH B . J 5 HOH 2 2002 2002 HOH HOH B . J 5 HOH 3 2003 2003 HOH HOH B . J 5 HOH 4 2004 2004 HOH HOH B . J 5 HOH 5 2005 2005 HOH HOH B . J 5 HOH 6 2006 2006 HOH HOH B . J 5 HOH 7 2007 2007 HOH HOH B . J 5 HOH 8 2008 2008 HOH HOH B . J 5 HOH 9 2009 2009 HOH HOH B . J 5 HOH 10 2010 2010 HOH HOH B . J 5 HOH 11 2011 2011 HOH HOH B . J 5 HOH 12 2012 2012 HOH HOH B . J 5 HOH 13 2013 2013 HOH HOH B . J 5 HOH 14 2014 2014 HOH HOH B . J 5 HOH 15 2015 2015 HOH HOH B . J 5 HOH 16 2016 2016 HOH HOH B . J 5 HOH 17 2017 2017 HOH HOH B . J 5 HOH 18 2018 2018 HOH HOH B . J 5 HOH 19 2019 2019 HOH HOH B . J 5 HOH 20 2020 2020 HOH HOH B . # _pdbx_molecule_features.prd_id PRD_000204 _pdbx_molecule_features.name VANCOMYCIN _pdbx_molecule_features.type Glycopeptide _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ;VANCOMYCIN IS A TRICYCLIC GLYCOPEPTIDE, GLYCOSYLATED BY A DISACCHARIDE (RESIDUES 8 AND 9) ON RESIDUE 4. ; # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_000204 A 1 PRD_000204 C 2 PRD_000204 B 2 PRD_000204 D # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,C,E,F,I 1 3,4 B,D,G,H,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4170 ? 1 MORE -68.4 ? 1 'SSA (A^2)' 3680 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'crystal symmetry operation' 4_455 y-1/2,-x+1/2,z+1/4 0.0000000000 1.0000000000 0.0000000000 -14.2200000000 -1.0000000000 0.0000000000 0.0000000000 14.2200000000 0.0000000000 0.0000000000 1.0000000000 16.5100000000 2 'crystal symmetry operation' 6_455 x-1/2,-y+1/2,-z+1/4 1.0000000000 0.0000000000 0.0000000000 -14.2200000000 0.0000000000 -1.0000000000 0.0000000000 14.2200000000 0.0000000000 0.0000000000 -1.0000000000 16.5100000000 3 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 33.0200000000 4 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 2012 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id I _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-07-30 2 'Structure model' 1 1 2011-06-14 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-07-27 5 'Structure model' 1 4 2012-12-12 6 'Structure model' 2 0 2020-07-29 7 'Structure model' 3 0 2023-11-15 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 6 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Non-polymer description' 7 4 'Structure model' 'Structure summary' 8 5 'Structure model' Other 9 6 'Structure model' Advisory 10 6 'Structure model' 'Atomic model' 11 6 'Structure model' 'Data collection' 12 6 'Structure model' 'Derived calculations' 13 6 'Structure model' 'Polymer sequence' 14 6 'Structure model' 'Refinement description' 15 6 'Structure model' 'Structure summary' 16 7 'Structure model' 'Atomic model' 17 7 'Structure model' 'Data collection' 18 7 'Structure model' 'Database references' 19 7 'Structure model' 'Derived calculations' 20 7 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 6 'Structure model' atom_site 2 6 'Structure model' chem_comp 3 6 'Structure model' entity 4 6 'Structure model' entity_poly 5 6 'Structure model' pdbx_branch_scheme 6 6 'Structure model' pdbx_chem_comp_identifier 7 6 'Structure model' pdbx_entity_branch 8 6 'Structure model' pdbx_entity_branch_descriptor 9 6 'Structure model' pdbx_entity_branch_link 10 6 'Structure model' pdbx_entity_branch_list 11 6 'Structure model' pdbx_entity_nonpoly 12 6 'Structure model' pdbx_molecule 13 6 'Structure model' pdbx_nonpoly_scheme 14 6 'Structure model' pdbx_struct_assembly 15 6 'Structure model' pdbx_struct_assembly_gen 16 6 'Structure model' pdbx_struct_special_symmetry 17 6 'Structure model' pdbx_validate_close_contact 18 6 'Structure model' software 19 6 'Structure model' struct_asym 20 6 'Structure model' struct_conn 21 6 'Structure model' struct_site 22 6 'Structure model' struct_site_gen 23 7 'Structure model' atom_site 24 7 'Structure model' chem_comp 25 7 'Structure model' chem_comp_atom 26 7 'Structure model' chem_comp_bond 27 7 'Structure model' database_2 28 7 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 6 'Structure model' '_atom_site.B_iso_or_equiv' 2 6 'Structure model' '_atom_site.Cartn_x' 3 6 'Structure model' '_atom_site.Cartn_y' 4 6 'Structure model' '_atom_site.Cartn_z' 5 6 'Structure model' '_atom_site.auth_asym_id' 6 6 'Structure model' '_atom_site.auth_atom_id' 7 6 'Structure model' '_atom_site.auth_comp_id' 8 6 'Structure model' '_atom_site.auth_seq_id' 9 6 'Structure model' '_atom_site.label_alt_id' 10 6 'Structure model' '_atom_site.label_asym_id' 11 6 'Structure model' '_atom_site.label_atom_id' 12 6 'Structure model' '_atom_site.label_comp_id' 13 6 'Structure model' '_atom_site.label_entity_id' 14 6 'Structure model' '_atom_site.occupancy' 15 6 'Structure model' '_atom_site.type_symbol' 16 6 'Structure model' '_chem_comp.name' 17 6 'Structure model' '_chem_comp.type' 18 6 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can' 19 6 'Structure model' '_pdbx_struct_assembly.method_details' 20 6 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 21 6 'Structure model' '_pdbx_struct_special_symmetry.label_asym_id' 22 6 'Structure model' '_pdbx_validate_close_contact.auth_asym_id_1' 23 6 'Structure model' '_pdbx_validate_close_contact.auth_asym_id_2' 24 6 'Structure model' '_pdbx_validate_close_contact.auth_seq_id_1' 25 6 'Structure model' '_pdbx_validate_close_contact.auth_seq_id_2' 26 6 'Structure model' '_struct_conn.pdbx_dist_value' 27 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 28 6 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 29 6 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id' 30 6 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 31 6 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 32 6 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 33 6 'Structure model' '_struct_conn.ptnr1_label_asym_id' 34 6 'Structure model' '_struct_conn.ptnr1_label_atom_id' 35 6 'Structure model' '_struct_conn.ptnr1_label_comp_id' 36 6 'Structure model' '_struct_conn.ptnr1_label_seq_id' 37 6 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 38 6 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 39 6 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 40 6 'Structure model' '_struct_conn.ptnr2_label_asym_id' 41 6 'Structure model' '_struct_conn.ptnr2_label_atom_id' 42 6 'Structure model' '_struct_conn.ptnr2_label_comp_id' 43 6 'Structure model' '_struct_conn.ptnr2_label_seq_id' 44 7 'Structure model' '_atom_site.auth_atom_id' 45 7 'Structure model' '_atom_site.label_atom_id' 46 7 'Structure model' '_chem_comp.pdbx_synonyms' 47 7 'Structure model' '_database_2.pdbx_DOI' 48 7 'Structure model' '_database_2.pdbx_database_accession' 49 7 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELXL refinement . ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 # _pdbx_entry_details.entry_id 1C0R _pdbx_entry_details.compound_details ;VANCOMYCIN IS A TRICYCLIC GLYCOPEPTIDE. THE SCAFFOLD IS A HEPTAPEPTIDE WITH THE CONFIGURATION D-D-L-D-D-L-L. IT IS FURTHER GLYCOSYLATED BY A DISACCHARIDE MADE OF D-GLUCOSE AND VANCOSAMINE. HERE, VANCOMYCIN IS REPRESENTED BY GROUPING TOUGHER THE SEQUENCE (SEQRES) AND THE TWO LIGANDS (HET) BGC AND RER. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O2 D BGC 1 ? B O5 D RER 2 ? ? 2.02 2 1 C2 D BGC 1 ? B C1 D RER 2 ? ? 2.15 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 3 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -100.24 _pdbx_validate_torsion.psi -68.57 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 3FG N N N N 1 3FG OD1 O N N 2 3FG CD1 C Y N 3 3FG CG1 C Y N 4 3FG CZ C Y N 5 3FG CD2 C Y N 6 3FG OD2 O N N 7 3FG CG2 C Y N 8 3FG CB C Y N 9 3FG CA C N S 10 3FG C C N N 11 3FG O O N N 12 3FG OXT O N N 13 3FG H H N N 14 3FG H2 H N N 15 3FG HA H N N 16 3FG HD1 H N N 17 3FG HG1 H N N 18 3FG HZ H N N 19 3FG HD2 H N N 20 3FG HG2 H N N 21 3FG HXT H N N 22 ASN N N N N 23 ASN CA C N S 24 ASN C C N N 25 ASN O O N N 26 ASN CB C N N 27 ASN CG C N N 28 ASN OD1 O N N 29 ASN ND2 N N N 30 ASN OXT O N N 31 ASN H H N N 32 ASN H2 H N N 33 ASN HA H N N 34 ASN HB2 H N N 35 ASN HB3 H N N 36 ASN HD21 H N N 37 ASN HD22 H N N 38 ASN HXT H N N 39 BGC C2 C N R 40 BGC C3 C N S 41 BGC C4 C N S 42 BGC C5 C N R 43 BGC C6 C N N 44 BGC C1 C N R 45 BGC O1 O N N 46 BGC O2 O N N 47 BGC O3 O N N 48 BGC O4 O N N 49 BGC O5 O N N 50 BGC O6 O N N 51 BGC H2 H N N 52 BGC H3 H N N 53 BGC H4 H N N 54 BGC H5 H N N 55 BGC H61 H N N 56 BGC H62 H N N 57 BGC H1 H N N 58 BGC HO1 H N N 59 BGC HO2 H N N 60 BGC HO3 H N N 61 BGC HO4 H N N 62 BGC HO6 H N N 63 CL CL CL N N 64 GHP N N N N 65 GHP CA C N R 66 GHP C C N N 67 GHP O O N N 68 GHP OXT O N N 69 GHP C1 C Y N 70 GHP C2 C Y N 71 GHP C3 C Y N 72 GHP C4 C Y N 73 GHP O4 O N N 74 GHP C5 C Y N 75 GHP C6 C Y N 76 GHP H H N N 77 GHP H2 H N N 78 GHP HA H N N 79 GHP HXT H N N 80 GHP HC2 H N N 81 GHP H3 H N N 82 GHP HO4 H N N 83 GHP H5 H N N 84 GHP H6 H N N 85 HOH O O N N 86 HOH H1 H N N 87 HOH H2 H N N 88 LAC C C N N 89 LAC CA C N R 90 LAC CB C N N 91 LAC O O N N 92 LAC OHN O N N 93 LAC OXT O N N 94 LAC HA H N N 95 LAC HB1 H N N 96 LAC HB2 H N N 97 LAC HB3 H N N 98 LAC H H N N 99 LAC HXT H N N 100 MLU N N N N 101 MLU CN C N N 102 MLU CA C N R 103 MLU C C N N 104 MLU O O N N 105 MLU CB C N N 106 MLU CG C N N 107 MLU CD1 C N N 108 MLU CD2 C N N 109 MLU OXT O N N 110 MLU H H N N 111 MLU HCN1 H N N 112 MLU HCN2 H N N 113 MLU HCN3 H N N 114 MLU HA H N N 115 MLU HB2 H N N 116 MLU HB3 H N N 117 MLU HXT H N N 118 MLU HG H N N 119 MLU HD11 H N N 120 MLU HD12 H N N 121 MLU HD13 H N N 122 MLU HD21 H N N 123 MLU HD22 H N N 124 MLU HD23 H N N 125 OMY N N N N 126 OMY CA C N S 127 OMY OCZ O N N 128 OMY CE2 C Y N 129 OMY CE1 C Y N 130 OMY CZ C Y N 131 OMY CG C Y N 132 OMY CD2 C Y N 133 OMY CD1 C Y N 134 OMY CB C N R 135 OMY CL CL N N 136 OMY O O N N 137 OMY C C N N 138 OMY ODE O N N 139 OMY OXT O N N 140 OMY H H N N 141 OMY H2 H N N 142 OMY HA H N N 143 OMY HCZ H N N 144 OMY HE2 H N N 145 OMY HD2 H N N 146 OMY HD1 H N N 147 OMY HB H N N 148 OMY HXT H N N 149 OMY HDE H N N 150 OMZ N N N N 151 OMZ CA C N R 152 OMZ C C N N 153 OMZ O O N N 154 OMZ OXT O N N 155 OMZ CB C N R 156 OMZ OC O N N 157 OMZ CG C Y N 158 OMZ CD1 C Y N 159 OMZ CD2 C Y N 160 OMZ CE1 C Y N 161 OMZ CL CL N N 162 OMZ CE2 C Y N 163 OMZ CZ C Y N 164 OMZ OH O N N 165 OMZ H H N N 166 OMZ H2 H N N 167 OMZ HA H N N 168 OMZ HB H N N 169 OMZ HXT H N N 170 OMZ HC H N N 171 OMZ HD1 H N N 172 OMZ HD2 H N N 173 OMZ HE2 H N N 174 OMZ HH H N N 175 RER C1 C N R 176 RER C2 C N N 177 RER C3 C N S 178 RER N3 N N N 179 RER C3A C N N 180 RER C4 C N S 181 RER O4 O N N 182 RER C5 C N S 183 RER O5 O N N 184 RER C5A C N N 185 RER O1 O N N 186 RER H1 H N N 187 RER H21C H N N 188 RER H22C H N N 189 RER HO1 H N N 190 RER H31N H N N 191 RER H32N H N N 192 RER H3A1 H N N 193 RER H3A2 H N N 194 RER H3A3 H N N 195 RER H4 H N N 196 RER HO4 H N N 197 RER H5 H N N 198 RER H5A1 H N N 199 RER H5A2 H N N 200 RER H5A3 H N N 201 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3FG N CA sing N N 1 3FG OD1 CD1 sing N N 2 3FG CD1 CG1 sing Y N 3 3FG CD1 CZ doub Y N 4 3FG CG1 CB doub Y N 5 3FG CZ CD2 sing Y N 6 3FG CD2 OD2 sing N N 7 3FG CD2 CG2 doub Y N 8 3FG CG2 CB sing Y N 9 3FG CB CA sing N N 10 3FG CA C sing N N 11 3FG C O doub N N 12 3FG C OXT sing N N 13 3FG N H sing N N 14 3FG N H2 sing N N 15 3FG CA HA sing N N 16 3FG OD1 HD1 sing N N 17 3FG CG1 HG1 sing N N 18 3FG CZ HZ sing N N 19 3FG OD2 HD2 sing N N 20 3FG CG2 HG2 sing N N 21 3FG OXT HXT sing N N 22 ASN N CA sing N N 23 ASN N H sing N N 24 ASN N H2 sing N N 25 ASN CA C sing N N 26 ASN CA CB sing N N 27 ASN CA HA sing N N 28 ASN C O doub N N 29 ASN C OXT sing N N 30 ASN CB CG sing N N 31 ASN CB HB2 sing N N 32 ASN CB HB3 sing N N 33 ASN CG OD1 doub N N 34 ASN CG ND2 sing N N 35 ASN ND2 HD21 sing N N 36 ASN ND2 HD22 sing N N 37 ASN OXT HXT sing N N 38 BGC C2 C3 sing N N 39 BGC C2 C1 sing N N 40 BGC C2 O2 sing N N 41 BGC C2 H2 sing N N 42 BGC C3 C4 sing N N 43 BGC C3 O3 sing N N 44 BGC C3 H3 sing N N 45 BGC C4 C5 sing N N 46 BGC C4 O4 sing N N 47 BGC C4 H4 sing N N 48 BGC C5 C6 sing N N 49 BGC C5 O5 sing N N 50 BGC C5 H5 sing N N 51 BGC C6 O6 sing N N 52 BGC C6 H61 sing N N 53 BGC C6 H62 sing N N 54 BGC C1 O1 sing N N 55 BGC C1 O5 sing N N 56 BGC C1 H1 sing N N 57 BGC O1 HO1 sing N N 58 BGC O2 HO2 sing N N 59 BGC O3 HO3 sing N N 60 BGC O4 HO4 sing N N 61 BGC O6 HO6 sing N N 62 GHP N CA sing N N 63 GHP N H sing N N 64 GHP N H2 sing N N 65 GHP CA C sing N N 66 GHP CA C1 sing N N 67 GHP CA HA sing N N 68 GHP C O doub N N 69 GHP C OXT sing N N 70 GHP OXT HXT sing N N 71 GHP C1 C2 doub Y N 72 GHP C1 C6 sing Y N 73 GHP C2 C3 sing Y N 74 GHP C2 HC2 sing N N 75 GHP C3 C4 doub Y N 76 GHP C3 H3 sing N N 77 GHP C4 O4 sing N N 78 GHP C4 C5 sing Y N 79 GHP O4 HO4 sing N N 80 GHP C5 C6 doub Y N 81 GHP C5 H5 sing N N 82 GHP C6 H6 sing N N 83 HOH O H1 sing N N 84 HOH O H2 sing N N 85 LAC C CA sing N N 86 LAC C O doub N N 87 LAC C OXT sing N N 88 LAC CA CB sing N N 89 LAC CA OHN sing N N 90 LAC CA HA sing N N 91 LAC CB HB1 sing N N 92 LAC CB HB2 sing N N 93 LAC CB HB3 sing N N 94 LAC OHN H sing N N 95 LAC OXT HXT sing N N 96 MLU N CN sing N N 97 MLU N CA sing N N 98 MLU CA C sing N N 99 MLU CA CB sing N N 100 MLU C O doub N N 101 MLU C OXT sing N N 102 MLU CB CG sing N N 103 MLU CG CD1 sing N N 104 MLU CG CD2 sing N N 105 MLU N H sing N N 106 MLU CN HCN1 sing N N 107 MLU CN HCN2 sing N N 108 MLU CN HCN3 sing N N 109 MLU CA HA sing N N 110 MLU CB HB2 sing N N 111 MLU CB HB3 sing N N 112 MLU OXT HXT sing N N 113 MLU CG HG sing N N 114 MLU CD1 HD11 sing N N 115 MLU CD1 HD12 sing N N 116 MLU CD1 HD13 sing N N 117 MLU CD2 HD21 sing N N 118 MLU CD2 HD22 sing N N 119 MLU CD2 HD23 sing N N 120 OMY N CA sing N N 121 OMY OCZ CZ sing N N 122 OMY CZ CE2 sing Y N 123 OMY CZ CE1 doub Y N 124 OMY CE2 CD2 doub Y N 125 OMY CD2 CG sing Y N 126 OMY CG CD1 doub Y N 127 OMY CG CB sing N N 128 OMY CD1 CE1 sing Y N 129 OMY CE1 CL sing N N 130 OMY C O doub N N 131 OMY C CA sing N N 132 OMY C OXT sing N N 133 OMY CA CB sing N N 134 OMY CB ODE sing N N 135 OMY N H sing N N 136 OMY N H2 sing N N 137 OMY CA HA sing N N 138 OMY OCZ HCZ sing N N 139 OMY CE2 HE2 sing N N 140 OMY CD2 HD2 sing N N 141 OMY CD1 HD1 sing N N 142 OMY CB HB sing N N 143 OMY OXT HXT sing N N 144 OMY ODE HDE sing N N 145 OMZ N CA sing N N 146 OMZ CA C sing N N 147 OMZ CA CB sing N N 148 OMZ C O doub N N 149 OMZ C OXT sing N N 150 OMZ CL CE1 sing N N 151 OMZ CB OC sing N N 152 OMZ CB CG sing N N 153 OMZ CG CD1 doub Y N 154 OMZ CG CD2 sing Y N 155 OMZ CD1 CE1 sing Y N 156 OMZ CD2 CE2 doub Y N 157 OMZ CE1 CZ doub Y N 158 OMZ CE2 CZ sing Y N 159 OMZ CZ OH sing N N 160 OMZ N H sing N N 161 OMZ N H2 sing N N 162 OMZ CA HA sing N N 163 OMZ CB HB sing N N 164 OMZ OXT HXT sing N N 165 OMZ OC HC sing N N 166 OMZ CD1 HD1 sing N N 167 OMZ CD2 HD2 sing N N 168 OMZ CE2 HE2 sing N N 169 OMZ OH HH sing N N 170 RER C1 C2 sing N N 171 RER C1 O5 sing N N 172 RER C1 O1 sing N N 173 RER C2 C3 sing N N 174 RER C3 N3 sing N N 175 RER C3 C3A sing N N 176 RER C3 C4 sing N N 177 RER C4 O4 sing N N 178 RER C4 C5 sing N N 179 RER C5 O5 sing N N 180 RER C5 C5A sing N N 181 RER C1 H1 sing N N 182 RER C2 H21C sing N N 183 RER C2 H22C sing N N 184 RER O1 HO1 sing N N 185 RER N3 H31N sing N N 186 RER N3 H32N sing N N 187 RER C3A H3A1 sing N N 188 RER C3A H3A2 sing N N 189 RER C3A H3A3 sing N N 190 RER C4 H4 sing N N 191 RER O4 HO4 sing N N 192 RER C5 H5 sing N N 193 RER C5A H5A1 sing N N 194 RER C5A H5A2 sing N N 195 RER C5A H5A3 sing N N 196 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 2 BGC 1 C BGC 1 A BGC 8 n C 2 RER 2 C RER 2 A RER 9 n D 2 BGC 1 D BGC 1 B BGC 8 n D 2 RER 2 D RER 2 B RER 9 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BGC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpb BGC 'COMMON NAME' GMML 1.0 b-D-glucopyranose BGC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Glcp BGC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 'WURCS=2.0/2,2,1/[a2122h-1b_1-5][ad621m-1a_1-5_3*C_3*N]/1-2/a2-b1' WURCS PDB2Glycan 1.1.0 2 2 '[][D-1-deoxy-Glcp]{[(2+1)][a-L-2-deoxy-Fucp3N]{}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.comp_id_1 RER _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_2 BGC _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 BGC 1 n 2 RER 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'CHLORIDE ION' CL 4 'LACTIC ACID' LAC 5 water HOH #