HEADER DNA 20-OCT-89 1D13 TITLE MOLECULAR STRUCTURE OF AN A-DNA DECAMER D(ACCGGCCGGT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*AP*CP*CP*GP*GP*CP*CP*GP*GP*T)-3'); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS A-DNA, DOUBLE HELIX, DNA EXPDTA X-RAY DIFFRACTION AUTHOR C.A.FREDERICK,G.J.QUIGLEY,M.-K.TENG,M.COLL,G.A.VAN DER MAREL,J.H.VAN AUTHOR 2 BOOM,A.RICH,A.H.-J.WANG REVDAT 4 07-FEB-24 1D13 1 REMARK REVDAT 3 24-FEB-09 1D13 1 VERSN REVDAT 2 01-APR-03 1D13 1 JRNL REVDAT 1 15-OCT-90 1D13 0 JRNL AUTH C.A.FREDERICK,G.J.QUIGLEY,M.K.TENG,M.COLL,G.A.VAN DER MAREL, JRNL AUTH 2 J.H.VAN BOOM,A.RICH,A.H.WANG JRNL TITL MOLECULAR STRUCTURE OF AN A-DNA DECAMER D(ACCGGCCGGT). JRNL REF EUR.J.BIOCHEM. V. 181 295 1989 JRNL REFN ISSN 0014-2956 JRNL PMID 2714286 JRNL DOI 10.1111/J.1432-1033.1989.TB14724.X REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NUCLSQ REMARK 3 AUTHORS : WESTHOF,DUMAS,MORAS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 1434 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 202 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 36 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 SUGAR-BASE BOND DISTANCE (A) : NULL ; NULL REMARK 3 SUGAR-BASE BOND ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 PHOSPHATE BONDS DISTANCE (A) : NULL ; NULL REMARK 3 PHOSPHATE BOND ANGLE, H-BOND (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION CONTACT (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION CONTACT (A) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 SUGAR-BASE BONDS (A**2) : NULL ; NULL REMARK 3 SUGAR-BASE ANGLES (A**2) : NULL ; NULL REMARK 3 PHOSPHATE BONDS (A**2) : NULL ; NULL REMARK 3 PHOSPHATE BOND ANGLE, H-BOND (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1D13 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000172618. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 283.00 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : DIFFRACTOMETER REMARK 200 DETECTOR MANUFACTURER : NICOLET P3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 1434 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.00333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.00667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.00500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 65.00833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 13.00167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 26.00333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 52.00667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 65.00833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 39.00500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 13.00167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 39.00500 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA A 1 O3' DA A 1 C3' -0.050 REMARK 500 DA A 1 C5 DA A 1 N7 -0.041 REMARK 500 DC A 2 P DC A 2 OP1 -0.111 REMARK 500 DC A 2 O4' DC A 2 C4' -0.119 REMARK 500 DC A 2 O3' DC A 2 C3' -0.052 REMARK 500 DC A 2 N3 DC A 2 C4 0.060 REMARK 500 DC A 3 N3 DC A 3 C4 0.053 REMARK 500 DG A 4 O3' DG A 4 C3' -0.077 REMARK 500 DG A 4 N1 DG A 4 C2 -0.058 REMARK 500 DG A 4 C6 DG A 4 N1 -0.061 REMARK 500 DG A 4 C5 DG A 4 N7 -0.041 REMARK 500 DG A 4 C8 DG A 4 N9 -0.057 REMARK 500 DG A 4 C2 DG A 4 N2 -0.114 REMARK 500 DG A 5 C6 DG A 5 N1 -0.064 REMARK 500 DG A 5 C8 DG A 5 N9 -0.056 REMARK 500 DG A 5 C2 DG A 5 N2 -0.100 REMARK 500 DC A 6 C5' DC A 6 C4' -0.076 REMARK 500 DC A 6 O4' DC A 6 C1' 0.067 REMARK 500 DC A 6 O3' DC A 6 C3' -0.051 REMARK 500 DC A 6 N3 DC A 6 C4 0.049 REMARK 500 DC A 7 P DC A 7 O5' 0.078 REMARK 500 DC A 7 O3' DC A 7 C3' -0.053 REMARK 500 DG A 8 P DG A 8 O5' 0.082 REMARK 500 DG A 8 C1' DG A 8 N9 -0.094 REMARK 500 DG A 8 C5 DG A 8 N7 -0.057 REMARK 500 DG A 8 C2 DG A 8 N2 -0.117 REMARK 500 DG A 9 P DG A 9 O5' 0.064 REMARK 500 DG A 9 C4' DG A 9 C3' 0.081 REMARK 500 DG A 9 O3' DG A 9 C3' -0.046 REMARK 500 DG A 9 N1 DG A 9 C2 -0.050 REMARK 500 DG A 9 C6 DG A 9 N1 -0.054 REMARK 500 DG A 9 C2 DG A 9 N2 -0.094 REMARK 500 DT A 10 C2' DT A 10 C1' 0.062 REMARK 500 DT A 10 O4' DT A 10 C4' -0.061 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA A 1 O4' - C4' - C3' ANGL. DEV. = -4.3 DEGREES REMARK 500 DA A 1 O4' - C1' - N9 ANGL. DEV. = -5.8 DEGREES REMARK 500 DC A 2 O4' - C4' - C3' ANGL. DEV. = -9.1 DEGREES REMARK 500 DC A 2 C1' - O4' - C4' ANGL. DEV. = 5.7 DEGREES REMARK 500 DC A 2 C3' - C2' - C1' ANGL. DEV. = -6.9 DEGREES REMARK 500 DC A 2 O4' - C1' - N1 ANGL. DEV. = -5.2 DEGREES REMARK 500 DC A 2 N3 - C4 - C5 ANGL. DEV. = -4.0 DEGREES REMARK 500 DC A 2 N1 - C2 - O2 ANGL. DEV. = 8.8 DEGREES REMARK 500 DC A 2 N3 - C2 - O2 ANGL. DEV. = -7.9 DEGREES REMARK 500 DC A 2 N3 - C4 - N4 ANGL. DEV. = -6.3 DEGREES REMARK 500 DC A 2 C5 - C4 - N4 ANGL. DEV. = 10.2 DEGREES REMARK 500 DC A 3 O5' - P - OP2 ANGL. DEV. = 11.9 DEGREES REMARK 500 DC A 3 O4' - C4' - C3' ANGL. DEV. = -8.2 DEGREES REMARK 500 DC A 3 C3' - C2' - C1' ANGL. DEV. = -5.9 DEGREES REMARK 500 DC A 3 O4' - C1' - N1 ANGL. DEV. = -10.7 DEGREES REMARK 500 DC A 3 N3 - C4 - C5 ANGL. DEV. = -3.2 DEGREES REMARK 500 DC A 3 N1 - C2 - O2 ANGL. DEV. = 9.2 DEGREES REMARK 500 DC A 3 N3 - C2 - O2 ANGL. DEV. = -6.5 DEGREES REMARK 500 DC A 3 N3 - C4 - N4 ANGL. DEV. = -5.3 DEGREES REMARK 500 DC A 3 C5 - C4 - N4 ANGL. DEV. = 8.4 DEGREES REMARK 500 DC A 3 C3' - O3' - P ANGL. DEV. = -9.4 DEGREES REMARK 500 DG A 4 O4' - C4' - C3' ANGL. DEV. = -6.6 DEGREES REMARK 500 DG A 4 C5' - C4' - C3' ANGL. DEV. = 7.8 DEGREES REMARK 500 DG A 4 C5' - C4' - O4' ANGL. DEV. = -12.6 DEGREES REMARK 500 DG A 4 C4' - C3' - C2' ANGL. DEV. = -7.0 DEGREES REMARK 500 DG A 4 O4' - C1' - C2' ANGL. DEV. = -5.6 DEGREES REMARK 500 DG A 4 N9 - C1' - C2' ANGL. DEV. = 9.4 DEGREES REMARK 500 DG A 4 C6 - N1 - C2 ANGL. DEV. = -4.8 DEGREES REMARK 500 DG A 4 C5 - C6 - N1 ANGL. DEV. = 5.2 DEGREES REMARK 500 DG A 4 N1 - C2 - N2 ANGL. DEV. = 9.6 DEGREES REMARK 500 DG A 4 N3 - C2 - N2 ANGL. DEV. = -13.1 DEGREES REMARK 500 DG A 4 C3' - O3' - P ANGL. DEV. = 20.0 DEGREES REMARK 500 DG A 5 OP1 - P - OP2 ANGL. DEV. = 9.8 DEGREES REMARK 500 DG A 5 O5' - P - OP1 ANGL. DEV. = -10.1 DEGREES REMARK 500 DG A 5 C5' - C4' - C3' ANGL. DEV. = 8.0 DEGREES REMARK 500 DG A 5 C6 - N1 - C2 ANGL. DEV. = -4.5 DEGREES REMARK 500 DG A 5 N1 - C2 - N3 ANGL. DEV. = 3.9 DEGREES REMARK 500 DG A 5 C5 - C6 - N1 ANGL. DEV. = 5.6 DEGREES REMARK 500 DG A 5 N1 - C2 - N2 ANGL. DEV. = 8.4 DEGREES REMARK 500 DG A 5 N3 - C2 - N2 ANGL. DEV. = -12.6 DEGREES REMARK 500 DG A 5 C3' - O3' - P ANGL. DEV. = 8.3 DEGREES REMARK 500 DC A 6 O4' - C4' - C3' ANGL. DEV. = -8.0 DEGREES REMARK 500 DC A 6 C5' - C4' - C3' ANGL. DEV. = 9.8 DEGREES REMARK 500 DC A 6 C3' - C2' - C1' ANGL. DEV. = -4.8 DEGREES REMARK 500 DC A 6 O4' - C1' - N1 ANGL. DEV. = -8.5 DEGREES REMARK 500 DC A 6 C2 - N3 - C4 ANGL. DEV. = 4.4 DEGREES REMARK 500 DC A 6 N3 - C4 - C5 ANGL. DEV. = -5.3 DEGREES REMARK 500 DC A 6 N1 - C2 - O2 ANGL. DEV. = 5.2 DEGREES REMARK 500 DC A 7 O5' - P - OP1 ANGL. DEV. = -8.2 DEGREES REMARK 500 DC A 7 O4' - C1' - N1 ANGL. DEV. = -8.3 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 75 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1D13 A 1 10 PDB 1D13 1D13 1 10 SEQRES 1 A 10 DA DC DC DG DG DC DC DG DG DT FORMUL 2 HOH *36(H2 O) CRYST1 39.230 39.230 78.010 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025491 0.014717 0.000000 0.00000 SCALE2 0.000000 0.029434 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012819 0.00000 ATOM 1 O5' DA A 1 -9.903 20.504 16.437 1.00 19.16 O ATOM 2 C5' DA A 1 -10.108 19.093 16.233 1.00 18.14 C ATOM 3 C4' DA A 1 -9.153 18.570 15.209 1.00 17.27 C ATOM 4 O4' DA A 1 -9.584 19.102 13.975 1.00 16.65 O ATOM 5 C3' DA A 1 -7.717 19.075 15.232 1.00 17.36 C ATOM 6 O3' DA A 1 -7.055 18.430 16.242 1.00 18.29 O ATOM 7 C2' DA A 1 -7.263 18.661 13.855 1.00 17.06 C ATOM 8 C1' DA A 1 -8.472 19.223 13.058 1.00 16.55 C ATOM 9 N9 DA A 1 -8.526 20.587 12.701 1.00 15.93 N ATOM 10 C8 DA A 1 -9.181 21.545 13.371 1.00 15.71 C ATOM 11 N7 DA A 1 -9.141 22.692 12.755 1.00 16.14 N ATOM 12 C5 DA A 1 -8.389 22.459 11.662 1.00 15.42 C ATOM 13 C6 DA A 1 -7.956 23.319 10.641 1.00 15.81 C ATOM 14 N6 DA A 1 -8.312 24.641 10.677 1.00 16.86 N ATOM 15 N1 DA A 1 -7.242 22.829 9.629 1.00 15.86 N ATOM 16 C2 DA A 1 -6.940 21.507 9.674 1.00 15.87 C ATOM 17 N3 DA A 1 -7.299 20.586 10.609 1.00 16.17 N ATOM 18 C4 DA A 1 -8.016 21.170 11.579 1.00 15.63 C ATOM 19 P DC A 2 -5.745 19.145 16.831 1.00 18.83 P ATOM 20 OP1 DC A 2 -5.154 18.205 17.640 1.00 18.43 O ATOM 21 OP2 DC A 2 -6.397 20.426 17.237 1.00 18.97 O ATOM 22 O5' DC A 2 -4.688 19.428 15.638 1.00 17.58 O ATOM 23 C5' DC A 2 -3.855 18.431 15.185 1.00 15.53 C ATOM 24 C4' DC A 2 -3.286 18.919 13.858 1.00 14.05 C ATOM 25 O4' DC A 2 -4.203 19.553 13.138 1.00 13.14 O ATOM 26 C3' DC A 2 -2.316 20.111 13.941 1.00 14.43 C ATOM 27 O3' DC A 2 -1.265 19.484 14.550 1.00 16.10 O ATOM 28 C2' DC A 2 -2.203 20.526 12.520 1.00 13.58 C ATOM 29 C1' DC A 2 -3.723 20.515 12.241 1.00 12.66 C ATOM 30 N1 DC A 2 -4.466 21.757 12.653 1.00 12.03 N ATOM 31 C2 DC A 2 -4.342 22.808 11.812 1.00 11.92 C ATOM 32 O2 DC A 2 -3.673 22.876 10.803 1.00 11.79 O ATOM 33 N3 DC A 2 -4.996 23.990 12.138 1.00 12.27 N ATOM 34 C4 DC A 2 -5.799 24.098 13.274 1.00 12.06 C ATOM 35 N4 DC A 2 -6.339 25.338 13.390 1.00 12.37 N ATOM 36 C5 DC A 2 -5.911 22.976 14.108 1.00 11.47 C ATOM 37 C6 DC A 2 -5.248 21.872 13.777 1.00 11.75 C ATOM 38 P DC A 3 -0.012 20.321 15.108 1.00 17.43 P ATOM 39 OP1 DC A 3 1.065 19.437 15.337 1.00 17.82 O ATOM 40 OP2 DC A 3 -0.535 20.944 16.331 1.00 17.51 O ATOM 41 O5' DC A 3 0.540 21.178 13.870 1.00 16.52 O ATOM 42 C5' DC A 3 1.511 20.827 13.009 1.00 15.20 C ATOM 43 C4' DC A 3 1.785 22.070 12.170 1.00 14.66 C ATOM 44 O4' DC A 3 0.554 22.660 11.751 1.00 14.00 O ATOM 45 C3' DC A 3 2.298 23.273 12.924 1.00 15.18 C ATOM 46 O3' DC A 3 3.676 22.968 13.030 1.00 17.59 O ATOM 47 C2' DC A 3 2.169 24.386 11.953 1.00 14.17 C ATOM 48 C1' DC A 3 0.798 24.077 11.526 1.00 12.85 C ATOM 49 N1 DC A 3 -0.334 24.593 12.329 1.00 11.93 N ATOM 50 C2 DC A 3 -0.729 25.841 11.946 1.00 11.81 C ATOM 51 O2 DC A 3 -0.226 26.560 11.110 1.00 12.15 O ATOM 52 N3 DC A 3 -1.777 26.388 12.639 1.00 11.56 N ATOM 53 C4 DC A 3 -2.440 25.716 13.657 1.00 10.80 C ATOM 54 N4 DC A 3 -3.485 26.420 14.153 1.00 11.01 N ATOM 55 C5 DC A 3 -2.005 24.444 14.012 1.00 11.01 C ATOM 56 C6 DC A 3 -0.968 23.919 13.344 1.00 11.42 C ATOM 57 P DG A 4 4.303 23.658 14.347 1.00 19.03 P ATOM 58 OP1 DG A 4 5.586 23.048 14.348 1.00 19.56 O ATOM 59 OP2 DG A 4 3.430 23.498 15.533 1.00 19.00 O ATOM 60 O5' DG A 4 4.506 25.242 13.977 1.00 17.96 O ATOM 61 C5' DG A 4 5.194 25.496 12.812 1.00 17.25 C ATOM 62 C4' DG A 4 5.085 26.987 12.475 1.00 16.51 C ATOM 63 O4' DG A 4 3.670 27.054 12.478 1.00 15.44 O ATOM 64 C3' DG A 4 5.354 28.114 13.495 1.00 16.99 C ATOM 65 O3' DG A 4 6.631 28.495 13.653 1.00 18.65 O ATOM 66 C2' DG A 4 4.470 29.172 12.771 1.00 15.67 C ATOM 67 C1' DG A 4 3.176 28.424 12.521 1.00 13.75 C ATOM 68 N9 DG A 4 2.093 28.400 13.435 1.00 11.98 N ATOM 69 C8 DG A 4 1.678 27.374 14.149 1.00 11.38 C ATOM 70 N7 DG A 4 0.588 27.644 14.853 1.00 11.74 N ATOM 71 C5 DG A 4 0.301 28.924 14.548 1.00 11.00 C ATOM 72 C6 DG A 4 -0.702 29.811 14.983 1.00 10.90 C ATOM 73 O6 DG A 4 -1.625 29.521 15.785 1.00 11.30 O ATOM 74 N1 DG A 4 -0.666 31.045 14.487 1.00 10.72 N ATOM 75 C2 DG A 4 0.264 31.385 13.621 1.00 10.63 C ATOM 76 N2 DG A 4 0.393 32.490 13.104 1.00 10.55 N ATOM 77 N3 DG A 4 1.250 30.628 13.160 1.00 11.29 N ATOM 78 C4 DG A 4 1.222 29.414 13.694 1.00 11.13 C ATOM 79 P DG A 5 7.555 29.199 14.724 1.00 20.20 P ATOM 80 OP1 DG A 5 8.806 29.060 13.944 1.00 20.32 O ATOM 81 OP2 DG A 5 7.228 28.687 16.069 1.00 18.87 O ATOM 82 O5' DG A 5 7.481 30.824 14.620 1.00 18.40 O ATOM 83 C5' DG A 5 7.278 31.571 13.528 1.00 16.18 C ATOM 84 C4' DG A 5 6.749 32.916 14.034 1.00 14.25 C ATOM 85 O4' DG A 5 5.348 32.869 13.699 1.00 13.60 O ATOM 86 C3' DG A 5 6.721 33.315 15.504 1.00 14.08 C ATOM 87 O3' DG A 5 7.829 34.104 15.843 1.00 15.07 O ATOM 88 C2' DG A 5 5.606 34.326 15.553 1.00 13.20 C ATOM 89 C1' DG A 5 4.610 33.689 14.593 1.00 11.42 C ATOM 90 N9 DG A 5 3.837 32.775 15.338 1.00 10.08 N ATOM 91 C8 DG A 5 4.047 31.505 15.622 1.00 8.90 C ATOM 92 N7 DG A 5 3.088 30.982 16.353 1.00 8.81 N ATOM 93 C5 DG A 5 2.192 32.007 16.509 1.00 9.23 C ATOM 94 C6 DG A 5 0.938 32.114 17.179 1.00 9.11 C ATOM 95 O6 DG A 5 0.326 31.154 17.758 1.00 9.34 O ATOM 96 N1 DG A 5 0.358 33.308 17.190 1.00 8.88 N ATOM 97 C2 DG A 5 0.891 34.334 16.508 1.00 9.01 C ATOM 98 N2 DG A 5 0.425 35.484 16.485 1.00 9.16 N ATOM 99 N3 DG A 5 2.040 34.358 15.834 1.00 9.41 N ATOM 100 C4 DG A 5 2.630 33.143 15.892 1.00 9.33 C ATOM 101 P DC A 6 8.462 34.319 17.258 1.00 15.65 P ATOM 102 OP1 DC A 6 9.681 34.885 16.931 1.00 15.91 O ATOM 103 OP2 DC A 6 8.366 33.061 18.023 1.00 16.46 O ATOM 104 O5' DC A 6 7.614 35.444 18.092 1.00 15.93 O ATOM 105 C5' DC A 6 7.096 36.560 17.477 1.00 14.42 C ATOM 106 C4' DC A 6 6.065 37.189 18.248 1.00 13.90 C ATOM 107 O4' DC A 6 4.948 36.334 17.917 1.00 13.54 O ATOM 108 C3' DC A 6 5.910 37.096 19.767 1.00 14.23 C ATOM 109 O3' DC A 6 6.661 38.060 20.382 1.00 16.16 O ATOM 110 C2' DC A 6 4.418 37.434 19.991 1.00 13.16 C ATOM 111 C1' DC A 6 3.864 36.602 18.899 1.00 12.77 C ATOM 112 N1 DC A 6 3.506 35.187 19.265 1.00 12.74 N ATOM 113 C2 DC A 6 2.304 34.975 19.857 1.00 12.60 C ATOM 114 O2 DC A 6 1.471 35.863 20.074 1.00 13.55 O ATOM 115 N3 DC A 6 1.994 33.688 20.173 1.00 12.20 N ATOM 116 C4 DC A 6 2.820 32.604 19.931 1.00 12.43 C ATOM 117 N4 DC A 6 2.427 31.327 20.258 1.00 12.70 N ATOM 118 C5 DC A 6 4.051 32.878 19.322 1.00 12.21 C ATOM 119 C6 DC A 6 4.364 34.120 18.996 1.00 12.37 C ATOM 120 P DC A 7 7.339 37.859 21.782 1.00 17.14 P ATOM 121 OP1 DC A 7 7.883 39.102 22.199 1.00 17.61 O ATOM 122 OP2 DC A 7 8.094 36.630 21.589 1.00 16.94 O ATOM 123 O5' DC A 7 6.198 37.702 22.992 1.00 16.78 O ATOM 124 C5' DC A 7 5.261 38.767 22.966 1.00 15.89 C ATOM 125 C4' DC A 7 4.093 38.440 23.867 1.00 15.11 C ATOM 126 O4' DC A 7 3.147 37.594 23.261 1.00 14.87 O ATOM 127 C3' DC A 7 4.367 37.712 25.213 1.00 15.02 C ATOM 128 O3' DC A 7 4.857 38.671 26.054 1.00 16.28 O ATOM 129 C2' DC A 7 2.981 37.293 25.647 1.00 14.19 C ATOM 130 C1' DC A 7 2.472 36.820 24.317 1.00 12.96 C ATOM 131 N1 DC A 7 2.921 35.445 23.946 1.00 12.02 N ATOM 132 C2 DC A 7 2.120 34.418 24.295 1.00 11.87 C ATOM 133 O2 DC A 7 1.089 34.551 24.948 1.00 12.68 O ATOM 134 N3 DC A 7 2.539 33.158 23.969 1.00 11.45 N ATOM 135 C4 DC A 7 3.687 32.859 23.291 1.00 11.23 C ATOM 136 N4 DC A 7 3.912 31.553 22.988 1.00 10.89 N ATOM 137 C5 DC A 7 4.498 33.960 22.933 1.00 11.47 C ATOM 138 C6 DC A 7 4.081 35.174 23.261 1.00 11.63 C ATOM 139 P DG A 8 5.735 38.541 27.365 1.00 17.28 P ATOM 140 OP1 DG A 8 5.754 39.762 28.054 1.00 17.16 O ATOM 141 OP2 DG A 8 6.838 37.598 27.134 1.00 17.43 O ATOM 142 O5' DG A 8 4.587 37.771 28.311 1.00 17.14 O ATOM 143 C5' DG A 8 4.958 36.464 28.757 1.00 15.52 C ATOM 144 C4' DG A 8 3.651 35.828 29.261 1.00 14.25 C ATOM 145 O4' DG A 8 3.068 35.223 28.105 1.00 13.09 O ATOM 146 C3' DG A 8 3.754 34.691 30.287 1.00 14.93 C ATOM 147 O3' DG A 8 3.895 35.100 31.613 1.00 15.99 O ATOM 148 C2' DG A 8 2.476 33.875 30.042 1.00 13.67 C ATOM 149 C1' DG A 8 2.401 34.023 28.491 1.00 11.88 C ATOM 150 N9 DG A 8 3.042 33.025 27.797 1.00 10.87 N ATOM 151 C8 DG A 8 4.183 33.165 27.102 1.00 10.63 C ATOM 152 N7 DG A 8 4.562 32.029 26.499 1.00 10.72 N ATOM 153 C5 DG A 8 3.644 31.136 26.860 1.00 10.29 C ATOM 154 C6 DG A 8 3.542 29.748 26.569 1.00 10.74 C ATOM 155 O6 DG A 8 4.291 29.094 25.783 1.00 10.16 O ATOM 156 N1 DG A 8 2.453 29.128 27.118 1.00 10.86 N ATOM 157 C2 DG A 8 1.591 29.820 27.867 1.00 9.82 C ATOM 158 N2 DG A 8 0.609 29.245 28.317 1.00 10.35 N ATOM 159 N3 DG A 8 1.618 31.085 28.222 1.00 9.97 N ATOM 160 C4 DG A 8 2.678 31.696 27.655 1.00 10.51 C ATOM 161 P DG A 9 4.876 34.194 32.501 1.00 18.37 P ATOM 162 OP1 DG A 9 4.472 34.770 33.732 1.00 18.21 O ATOM 163 OP2 DG A 9 6.277 34.197 32.026 1.00 17.84 O ATOM 164 O5' DG A 9 4.189 32.688 32.575 1.00 18.29 O ATOM 165 C5' DG A 9 3.009 32.663 33.418 1.00 17.37 C ATOM 166 C4' DG A 9 2.442 31.258 33.319 1.00 17.06 C ATOM 167 O4' DG A 9 2.343 30.896 31.939 1.00 15.13 O ATOM 168 C3' DG A 9 3.281 30.031 33.938 1.00 17.48 C ATOM 169 O3' DG A 9 3.267 30.254 35.293 1.00 20.02 O ATOM 170 C2' DG A 9 2.557 28.880 33.258 1.00 15.66 C ATOM 171 C1' DG A 9 2.430 29.438 31.856 1.00 13.62 C ATOM 172 N9 DG A 9 3.582 29.384 31.031 1.00 12.17 N ATOM 173 C8 DG A 9 4.530 30.266 30.696 1.00 11.20 C ATOM 174 N7 DG A 9 5.342 29.789 29.762 1.00 11.70 N ATOM 175 C5 DG A 9 4.866 28.525 29.475 1.00 11.77 C ATOM 176 C6 DG A 9 5.288 27.444 28.637 1.00 11.59 C ATOM 177 O6 DG A 9 6.288 27.481 27.837 1.00 11.66 O ATOM 178 N1 DG A 9 4.567 26.318 28.641 1.00 10.91 N ATOM 179 C2 DG A 9 3.483 26.208 29.392 1.00 11.03 C ATOM 180 N2 DG A 9 2.681 25.262 29.521 1.00 10.64 N ATOM 181 N3 DG A 9 3.029 27.133 30.262 1.00 11.87 N ATOM 182 C4 DG A 9 3.765 28.265 30.234 1.00 11.60 C ATOM 183 P DT A 10 4.181 29.437 36.293 1.00 21.95 P ATOM 184 OP1 DT A 10 3.583 29.434 37.588 1.00 21.78 O ATOM 185 OP2 DT A 10 5.589 29.881 36.074 1.00 22.56 O ATOM 186 O5' DT A 10 3.899 27.927 35.701 1.00 22.75 O ATOM 187 C5' DT A 10 2.989 27.110 36.516 1.00 22.80 C ATOM 188 C4' DT A 10 3.316 25.653 36.124 1.00 21.86 C ATOM 189 O4' DT A 10 3.160 25.577 34.750 1.00 20.96 O ATOM 190 C3' DT A 10 4.792 25.233 36.410 1.00 21.88 C ATOM 191 O3' DT A 10 4.940 25.005 37.809 1.00 22.49 O ATOM 192 C2' DT A 10 4.911 24.050 35.492 1.00 21.36 C ATOM 193 C1' DT A 10 4.120 24.655 34.264 1.00 20.92 C ATOM 194 N1 DT A 10 5.069 25.255 33.279 1.00 20.67 N ATOM 195 C2 DT A 10 5.408 24.460 32.232 1.00 20.36 C ATOM 196 O2 DT A 10 5.038 23.333 32.054 1.00 20.56 O ATOM 197 N3 DT A 10 6.280 24.914 31.290 1.00 20.23 N ATOM 198 C4 DT A 10 6.859 26.174 31.362 1.00 20.67 C ATOM 199 O4 DT A 10 7.669 26.444 30.445 1.00 20.95 O ATOM 200 C5 DT A 10 6.499 27.003 32.462 1.00 20.61 C ATOM 201 C7 DT A 10 7.058 28.383 32.637 1.00 20.17 C ATOM 202 C6 DT A 10 5.635 26.513 33.370 1.00 20.68 C TER 203 DT A 10 HETATM 204 O HOH A 11 -4.009 20.845 20.492 1.00 34.28 O HETATM 205 O HOH A 12 -3.599 20.707 7.886 1.00 39.14 O HETATM 206 O HOH A 13 0.541 25.058 32.888 1.00 50.18 O HETATM 207 O HOH A 14 -9.666 25.906 14.132 1.00 58.13 O HETATM 208 O HOH A 15 -5.462 18.950 7.647 1.00 38.59 O HETATM 209 O HOH A 16 12.905 35.496 16.416 1.00 53.80 O HETATM 210 O HOH A 17 -9.816 29.206 9.665 1.00 31.30 O HETATM 211 O HOH A 18 1.155 27.003 8.533 1.00 43.09 O HETATM 212 O HOH A 19 17.827 31.180 11.825 1.00 41.85 O HETATM 213 O HOH A 20 -0.822 21.548 9.344 1.00 31.78 O HETATM 214 O HOH A 21 0.894 31.436 9.115 1.00 31.97 O HETATM 215 O HOH A 22 3.262 32.244 10.708 1.00 40.40 O HETATM 216 O HOH A 23 9.072 25.777 11.925 1.00 57.02 O HETATM 217 O HOH A 24 7.889 29.346 26.230 1.00 32.93 O HETATM 218 O HOH A 25 8.153 24.084 16.313 1.00 48.25 O HETATM 219 O HOH A 26 -1.116 26.607 18.676 1.00 38.82 O HETATM 220 O HOH A 27 0.687 24.234 16.538 1.00 43.09 O HETATM 221 O HOH A 28 11.627 27.494 16.803 1.00 45.15 O HETATM 222 O HOH A 29 -3.066 22.261 17.728 1.00 54.00 O HETATM 223 O HOH A 30 -4.935 25.821 17.151 1.00 41.06 O HETATM 224 O HOH A 31 0.887 28.116 18.396 1.00 31.84 O HETATM 225 O HOH A 32 3.822 28.260 17.354 1.00 28.39 O HETATM 226 O HOH A 33 1.009 31.651 6.088 1.00 41.90 O HETATM 227 O HOH A 34 -10.792 37.814 5.706 1.00 52.93 O HETATM 228 O HOH A 35 -9.522 31.818 7.720 1.00 38.78 O HETATM 229 O HOH A 36 -8.214 43.876 8.132 1.00 45.36 O HETATM 230 O HOH A 37 5.701 23.248 9.124 1.00 38.97 O HETATM 231 O HOH A 38 3.409 29.514 8.378 1.00 44.69 O HETATM 232 O HOH A 39 4.278 27.256 39.728 1.00 41.68 O HETATM 233 O HOH A 40 6.792 30.808 20.366 1.00 39.69 O HETATM 234 O HOH A 41 8.070 27.989 19.165 1.00 41.96 O HETATM 235 O HOH A 42 -7.648 34.819 14.262 1.00 37.81 O HETATM 236 O HOH A 43 8.100 31.222 34.726 1.00 45.11 O HETATM 237 O HOH A 44 10.739 37.590 19.755 1.00 39.73 O HETATM 238 O HOH A 45 -10.297 44.015 11.917 1.00 43.63 O HETATM 239 O HOH A 46 -8.004 32.778 10.727 1.00 44.05 O MASTER 342 0 0 0 0 0 0 6 238 1 0 1 END