HEADER DNA 03-JUL-90 1D15 TITLE TERNARY INTERACTIONS OF SPERMINE WITH DNA: 4'-EPIADRIAMYCIN AND OTHER TITLE 2 DNA: ANTHRACYCLINE COMPLEXES COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*GP*AP*TP*CP*G)-3'); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA EXPDTA X-RAY DIFFRACTION AUTHOR L.D.WILLIAMS,C.A.FREDERICK,G.UGHETTO,A.RICH REVDAT 3 07-FEB-24 1D15 1 REMARK REVDAT 2 24-FEB-09 1D15 1 VERSN REVDAT 1 15-JUL-91 1D15 0 JRNL AUTH L.D.WILLIAMS,C.A.FREDERICK,G.UGHETTO,A.RICH JRNL TITL TERNARY INTERACTIONS OF SPERMINE WITH DNA: 4'-EPIADRIAMYCIN JRNL TITL 2 AND OTHER DNA: ANTHRACYCLINE COMPLEXES. JRNL REF NUCLEIC ACIDS RES. V. 18 5533 1990 JRNL REFN ISSN 0305-1048 JRNL PMID 2216725 JRNL DOI 10.1093/NAR/18.18.5533 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ (MODIFIED BY G.J.QUIGLEY) REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.500 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 1714 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 120 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 38 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.019 ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1D15 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000172620. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 6.00 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : DIFFRACTOMETER REMARK 200 DETECTOR MANUFACTURER : RIGAKU AFC-5 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 1714 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 10.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.00, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.57500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 14.02000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 14.02000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 13.28750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 14.02000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 14.02000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.86250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 14.02000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 14.02000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 13.28750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 14.02000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 14.02000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 39.86250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 26.57500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 28.04000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 28.04000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 26.57500 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 32 O HOH A 32 8665 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC A 1 C4' DC A 1 C3' 0.104 REMARK 500 DC A 1 C2' DC A 1 C1' 0.092 REMARK 500 DC A 1 O3' DC A 1 C3' -0.081 REMARK 500 DG A 2 P DG A 2 O5' 0.069 REMARK 500 DG A 2 C2' DG A 2 C1' 0.098 REMARK 500 DG A 2 C6 DG A 2 N1 -0.071 REMARK 500 DG A 2 C2 DG A 2 N2 -0.121 REMARK 500 DT A 4 O4' DT A 4 C1' 0.089 REMARK 500 DC A 5 P DC A 5 O5' 0.078 REMARK 500 DC A 5 C2' DC A 5 C1' 0.081 REMARK 500 DC A 5 N3 DC A 5 C4 0.042 REMARK 500 DG A 6 C2' DG A 6 C1' 0.083 REMARK 500 DG A 6 C6 DG A 6 N1 -0.070 REMARK 500 DG A 6 C8 DG A 6 N9 -0.050 REMARK 500 DG A 6 N9 DG A 6 C4 0.057 REMARK 500 DG A 6 C2 DG A 6 N2 -0.098 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC A 1 C5' - C4' - O4' ANGL. DEV. = 6.7 DEGREES REMARK 500 DC A 1 O4' - C1' - N1 ANGL. DEV. = -5.9 DEGREES REMARK 500 DC A 1 N1 - C2 - N3 ANGL. DEV. = -4.5 DEGREES REMARK 500 DC A 1 C2 - N3 - C4 ANGL. DEV. = 7.1 DEGREES REMARK 500 DC A 1 N3 - C4 - C5 ANGL. DEV. = -5.5 DEGREES REMARK 500 DC A 1 C5 - C4 - N4 ANGL. DEV. = 5.8 DEGREES REMARK 500 DG A 2 O4' - C1' - N9 ANGL. DEV. = 10.6 DEGREES REMARK 500 DG A 2 C6 - N1 - C2 ANGL. DEV. = -5.2 DEGREES REMARK 500 DG A 2 N1 - C2 - N3 ANGL. DEV. = 4.0 DEGREES REMARK 500 DG A 2 C5 - C6 - N1 ANGL. DEV. = 6.2 DEGREES REMARK 500 DG A 2 N3 - C2 - N2 ANGL. DEV. = -8.0 DEGREES REMARK 500 DG A 2 N1 - C6 - O6 ANGL. DEV. = -7.2 DEGREES REMARK 500 DA A 3 O5' - P - OP1 ANGL. DEV. = -7.8 DEGREES REMARK 500 DA A 3 O5' - C5' - C4' ANGL. DEV. = -5.2 DEGREES REMARK 500 DA A 3 O4' - C1' - N9 ANGL. DEV. = 4.0 DEGREES REMARK 500 DT A 4 O5' - P - OP2 ANGL. DEV. = 7.4 DEGREES REMARK 500 DT A 4 O5' - C5' - C4' ANGL. DEV. = -7.8 DEGREES REMARK 500 DT A 4 C1' - O4' - C4' ANGL. DEV. = -6.6 DEGREES REMARK 500 DT A 4 O4' - C1' - N1 ANGL. DEV. = -9.9 DEGREES REMARK 500 DC A 5 O5' - P - OP1 ANGL. DEV. = -7.3 DEGREES REMARK 500 DC A 5 O5' - C5' - C4' ANGL. DEV. = -7.7 DEGREES REMARK 500 DC A 5 O4' - C1' - C2' ANGL. DEV. = -5.2 DEGREES REMARK 500 DC A 5 O4' - C1' - N1 ANGL. DEV. = 14.0 DEGREES REMARK 500 DC A 5 C6 - N1 - C2 ANGL. DEV. = -2.5 DEGREES REMARK 500 DC A 5 C2 - N3 - C4 ANGL. DEV. = 6.1 DEGREES REMARK 500 DC A 5 N3 - C4 - C5 ANGL. DEV. = -4.5 DEGREES REMARK 500 DC A 5 C5 - C6 - N1 ANGL. DEV. = 5.3 DEGREES REMARK 500 DG A 6 O3' - P - O5' ANGL. DEV. = 12.1 DEGREES REMARK 500 DG A 6 O4' - C4' - C3' ANGL. DEV. = -4.7 DEGREES REMARK 500 DG A 6 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DG A 6 C6 - N1 - C2 ANGL. DEV. = -8.6 DEGREES REMARK 500 DG A 6 N3 - C4 - C5 ANGL. DEV. = -3.6 DEGREES REMARK 500 DG A 6 C5 - C6 - N1 ANGL. DEV. = 9.0 DEGREES REMARK 500 DG A 6 N3 - C4 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 DG A 6 N1 - C2 - N2 ANGL. DEV. = 7.4 DEGREES REMARK 500 DG A 6 N3 - C2 - N2 ANGL. DEV. = -11.0 DEGREES REMARK 500 DG A 6 N1 - C6 - O6 ANGL. DEV. = -4.1 DEGREES REMARK 500 DG A 6 C5 - C6 - O6 ANGL. DEV. = -4.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DM6 A 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SPM A 8 DBREF 1D15 A 1 6 PDB 1D15 1D15 1 6 SEQRES 1 A 6 DC DG DA DT DC DG HET DM6 A 7 39 HET SPM A 8 14 HETNAM DM6 4'-EPIDOXORUBICIN HETNAM SPM SPERMINE HETSYN DM6 4'-EPIADRIAMYCIN FORMUL 2 DM6 C27 H30 N O11 1+ FORMUL 3 SPM C10 H26 N4 FORMUL 4 HOH *38(H2 O) SITE 1 AC1 9 DC A 1 DG A 2 DA A 3 DT A 4 SITE 2 AC1 9 DC A 5 DG A 6 SPM A 8 HOH A 16 SITE 3 AC1 9 HOH A 19 SITE 1 AC2 10 DG A 2 DA A 3 DT A 4 DC A 5 SITE 2 AC2 10 DG A 6 DM6 A 7 HOH A 14 HOH A 23 SITE 3 AC2 10 HOH A 24 HOH A 35 CRYST1 28.040 28.040 53.150 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.035663 0.000000 0.000000 0.00000 SCALE2 0.000000 0.035663 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018815 0.00000 ATOM 1 O5' DC A 1 9.286 20.225 23.249 1.00 16.03 O ATOM 2 C5' DC A 1 9.903 21.301 23.953 1.00 15.38 C ATOM 3 C4' DC A 1 11.302 20.995 24.265 1.00 15.55 C ATOM 4 O4' DC A 1 11.539 19.820 24.998 1.00 15.08 O ATOM 5 C3' DC A 1 12.204 20.805 22.917 1.00 16.58 C ATOM 6 O3' DC A 1 13.187 21.694 23.104 1.00 18.57 O ATOM 7 C2' DC A 1 12.667 19.368 22.967 1.00 14.49 C ATOM 8 C1' DC A 1 12.670 19.072 24.551 1.00 12.26 C ATOM 9 N1 DC A 1 12.194 17.670 24.695 1.00 9.87 N ATOM 10 C2 DC A 1 13.163 16.716 24.814 1.00 9.38 C ATOM 11 O2 DC A 1 14.350 17.003 24.843 1.00 8.49 O ATOM 12 N3 DC A 1 12.703 15.443 24.850 1.00 8.94 N ATOM 13 C4 DC A 1 11.401 15.040 24.831 1.00 8.03 C ATOM 14 N4 DC A 1 11.151 13.693 24.925 1.00 8.27 N ATOM 15 C5 DC A 1 10.444 16.044 24.704 1.00 8.81 C ATOM 16 C6 DC A 1 10.852 17.307 24.620 1.00 9.03 C ATOM 17 P DG A 2 13.677 22.762 22.050 1.00 20.14 P ATOM 18 OP1 DG A 2 14.535 23.718 22.702 1.00 20.41 O ATOM 19 OP2 DG A 2 12.523 23.067 21.301 1.00 20.82 O ATOM 20 O5' DG A 2 14.516 21.833 20.956 1.00 19.73 O ATOM 21 C5' DG A 2 15.751 21.359 21.403 1.00 17.62 C ATOM 22 C4' DG A 2 16.335 20.552 20.218 1.00 16.01 C ATOM 23 O4' DG A 2 15.595 19.318 20.189 1.00 14.81 O ATOM 24 C3' DG A 2 16.126 21.197 18.829 1.00 15.70 C ATOM 25 O3' DG A 2 17.202 20.752 18.031 1.00 18.38 O ATOM 26 C2' DG A 2 14.892 20.559 18.270 1.00 14.49 C ATOM 27 C1' DG A 2 15.087 19.068 18.865 1.00 12.53 C ATOM 28 N9 DG A 2 13.928 18.309 18.722 1.00 10.55 N ATOM 29 C8 DG A 2 12.642 18.703 18.633 1.00 9.67 C ATOM 30 N7 DG A 2 11.783 17.712 18.480 1.00 9.38 N ATOM 31 C5 DG A 2 12.578 16.586 18.415 1.00 9.04 C ATOM 32 C6 DG A 2 12.280 15.219 18.234 1.00 8.24 C ATOM 33 O6 DG A 2 11.168 14.654 18.147 1.00 8.91 O ATOM 34 N1 DG A 2 13.285 14.363 18.256 1.00 7.54 N ATOM 35 C2 DG A 2 14.550 14.813 18.414 1.00 7.25 C ATOM 36 N2 DG A 2 15.490 14.037 18.364 1.00 7.35 N ATOM 37 N3 DG A 2 14.946 16.048 18.621 1.00 8.24 N ATOM 38 C4 DG A 2 13.918 16.900 18.550 1.00 8.78 C ATOM 39 P DA A 3 18.041 21.670 17.054 1.00 19.91 P ATOM 40 OP1 DA A 3 18.672 22.653 17.889 1.00 21.14 O ATOM 41 OP2 DA A 3 17.215 22.054 15.881 1.00 20.70 O ATOM 42 O5' DA A 3 19.400 20.908 16.534 1.00 17.86 O ATOM 43 C5' DA A 3 20.104 20.192 17.467 1.00 15.57 C ATOM 44 C4' DA A 3 20.298 18.813 16.816 1.00 13.53 C ATOM 45 O4' DA A 3 19.194 17.950 17.014 1.00 11.49 O ATOM 46 C3' DA A 3 20.639 18.813 15.305 1.00 12.73 C ATOM 47 O3' DA A 3 21.820 18.076 15.202 1.00 14.47 O ATOM 48 C2' DA A 3 19.462 18.103 14.628 1.00 11.93 C ATOM 49 C1' DA A 3 18.815 17.320 15.833 1.00 9.27 C ATOM 50 N9 DA A 3 17.408 17.299 15.663 1.00 7.63 N ATOM 51 C8 DA A 3 16.476 18.241 15.589 1.00 6.87 C ATOM 52 N7 DA A 3 15.237 17.818 15.378 1.00 6.60 N ATOM 53 C5 DA A 3 15.414 16.466 15.296 1.00 6.80 C ATOM 54 C6 DA A 3 14.518 15.404 15.001 1.00 5.76 C ATOM 55 N6 DA A 3 13.191 15.585 14.871 1.00 6.04 N ATOM 56 N1 DA A 3 15.003 14.178 14.957 1.00 5.26 N ATOM 57 C2 DA A 3 16.331 13.975 15.096 1.00 5.14 C ATOM 58 N3 DA A 3 17.273 14.872 15.362 1.00 6.46 N ATOM 59 C4 DA A 3 16.730 16.102 15.437 1.00 6.63 C ATOM 60 P DT A 4 22.546 17.947 13.780 1.00 15.51 P ATOM 61 OP1 DT A 4 23.867 17.580 14.223 1.00 16.33 O ATOM 62 OP2 DT A 4 22.375 19.130 13.014 1.00 16.16 O ATOM 63 O5' DT A 4 22.035 16.552 13.150 1.00 16.03 O ATOM 64 C5' DT A 4 22.493 15.349 13.774 1.00 15.30 C ATOM 65 C4' DT A 4 21.716 14.272 12.979 1.00 14.60 C ATOM 66 O4' DT A 4 20.309 14.621 13.015 1.00 13.82 O ATOM 67 C3' DT A 4 22.101 14.245 11.464 1.00 14.71 C ATOM 68 O3' DT A 4 22.714 13.006 11.201 1.00 16.81 O ATOM 69 C2' DT A 4 20.826 14.453 10.737 1.00 13.39 C ATOM 70 C1' DT A 4 19.775 14.067 11.717 1.00 11.82 C ATOM 71 N1 DT A 4 18.506 14.799 11.688 1.00 10.06 N ATOM 72 C2 DT A 4 17.410 13.996 11.608 1.00 9.93 C ATOM 73 O2 DT A 4 17.462 12.751 11.545 1.00 10.50 O ATOM 74 N3 DT A 4 16.198 14.606 11.661 1.00 9.06 N ATOM 75 C4 DT A 4 15.996 15.951 11.804 1.00 9.03 C ATOM 76 O4 DT A 4 14.827 16.390 11.817 1.00 9.41 O ATOM 77 C5 DT A 4 17.156 16.750 11.913 1.00 10.27 C ATOM 78 C7 DT A 4 17.078 18.250 12.042 1.00 9.48 C ATOM 79 C6 DT A 4 18.357 16.143 11.866 1.00 10.04 C ATOM 80 P DC A 5 23.558 12.759 9.861 1.00 18.65 P ATOM 81 OP1 DC A 5 24.212 11.528 10.061 1.00 19.69 O ATOM 82 OP2 DC A 5 24.211 14.033 9.541 1.00 19.58 O ATOM 83 O5' DC A 5 22.574 12.309 8.587 1.00 17.29 O ATOM 84 C5' DC A 5 21.986 11.027 8.732 1.00 13.82 C ATOM 85 C4' DC A 5 20.781 11.137 7.819 1.00 12.40 C ATOM 86 O4' DC A 5 19.737 11.981 8.409 1.00 10.81 O ATOM 87 C3' DC A 5 21.158 11.817 6.461 1.00 12.34 C ATOM 88 O3' DC A 5 20.363 11.096 5.545 1.00 13.84 O ATOM 89 C2' DC A 5 20.660 13.218 6.694 1.00 10.69 C ATOM 90 C1' DC A 5 19.290 12.884 7.451 1.00 8.98 C ATOM 91 N1 DC A 5 18.505 14.073 7.801 1.00 7.61 N ATOM 92 C2 DC A 5 17.164 13.876 8.068 1.00 6.51 C ATOM 93 O2 DC A 5 16.670 12.750 8.087 1.00 7.13 O ATOM 94 N3 DC A 5 16.430 14.987 8.317 1.00 6.09 N ATOM 95 C4 DC A 5 16.904 16.280 8.348 1.00 4.86 C ATOM 96 N4 DC A 5 16.081 17.343 8.572 1.00 5.41 N ATOM 97 C5 DC A 5 18.279 16.475 8.090 1.00 6.02 C ATOM 98 C6 DC A 5 18.987 15.379 7.831 1.00 6.92 C ATOM 99 P DG A 6 21.035 9.887 4.779 1.00 15.86 P ATOM 100 OP1 DG A 6 21.674 9.115 5.758 1.00 16.16 O ATOM 101 OP2 DG A 6 21.752 10.614 3.655 1.00 16.22 O ATOM 102 O5' DG A 6 20.033 8.835 4.105 1.00 14.23 O ATOM 103 C5' DG A 6 18.825 8.468 4.592 1.00 13.49 C ATOM 104 C4' DG A 6 18.028 7.712 3.559 1.00 11.92 C ATOM 105 O4' DG A 6 17.048 8.528 2.920 1.00 11.51 O ATOM 106 C3' DG A 6 18.777 7.144 2.288 1.00 11.12 C ATOM 107 O3' DG A 6 17.865 6.117 1.973 1.00 12.23 O ATOM 108 C2' DG A 6 18.866 8.329 1.378 1.00 10.21 C ATOM 109 C1' DG A 6 17.455 9.052 1.608 1.00 9.00 C ATOM 110 N9 DG A 6 17.468 10.464 1.602 1.00 7.08 N ATOM 111 C8 DG A 6 18.508 11.284 1.600 1.00 6.54 C ATOM 112 N7 DG A 6 18.205 12.550 1.593 1.00 7.46 N ATOM 113 C5 DG A 6 16.802 12.551 1.529 1.00 7.49 C ATOM 114 C6 DG A 6 15.867 13.615 1.492 1.00 6.78 C ATOM 115 O6 DG A 6 16.192 14.829 1.480 1.00 7.92 O ATOM 116 N1 DG A 6 14.570 13.366 1.454 1.00 7.03 N ATOM 117 C2 DG A 6 14.202 12.054 1.457 1.00 6.42 C ATOM 118 N2 DG A 6 13.020 11.671 1.437 1.00 5.57 N ATOM 119 N3 DG A 6 15.001 10.987 1.505 1.00 6.31 N ATOM 120 C4 DG A 6 16.309 11.301 1.518 1.00 7.16 C TER 121 DG A 6 HETATM 122 C1 DM6 A 7 15.245 18.255 5.039 1.00 7.20 C HETATM 123 C2 DM6 A 7 16.433 19.025 5.044 1.00 8.26 C HETATM 124 C3 DM6 A 7 17.684 18.356 5.007 1.00 9.81 C HETATM 125 C4 DM6 A 7 17.698 16.940 4.931 1.00 10.04 C HETATM 126 C5 DM6 A 7 16.480 14.786 4.911 1.00 7.20 C HETATM 127 C6 DM6 A 7 15.287 12.689 4.881 1.00 7.31 C HETATM 128 C7 DM6 A 7 14.146 10.528 4.854 1.00 9.23 C HETATM 129 C8 DM6 A 7 12.858 9.790 4.624 1.00 9.49 C HETATM 130 C9 DM6 A 7 11.777 10.520 5.508 1.00 10.12 C HETATM 131 C10 DM6 A 7 11.596 11.974 4.859 1.00 8.87 C HETATM 132 C11 DM6 A 7 12.892 14.095 4.931 1.00 6.75 C HETATM 133 C12 DM6 A 7 14.111 16.164 4.971 1.00 7.75 C HETATM 134 C13 DM6 A 7 10.461 9.808 5.312 1.00 11.31 C HETATM 135 C14 DM6 A 7 9.999 8.821 6.280 1.00 12.38 C HETATM 136 C15 DM6 A 7 15.297 16.881 4.981 1.00 7.26 C HETATM 137 C16 DM6 A 7 16.504 16.186 4.934 1.00 8.41 C HETATM 138 C17 DM6 A 7 15.309 14.072 4.915 1.00 6.52 C HETATM 139 C18 DM6 A 7 14.112 14.759 4.943 1.00 6.63 C HETATM 140 C19 DM6 A 7 12.859 12.699 4.891 1.00 7.52 C HETATM 141 C20 DM6 A 7 14.072 12.011 4.844 1.00 8.16 C HETATM 142 C21 DM6 A 7 20.130 17.122 4.945 1.00 11.11 C HETATM 143 O4 DM6 A 7 18.915 16.231 4.891 1.00 11.03 O HETATM 144 O5 DM6 A 7 17.705 14.136 4.793 1.00 7.77 O HETATM 145 O6 DM6 A 7 16.478 11.958 4.858 1.00 7.69 O HETATM 146 O7 DM6 A 7 14.938 10.238 5.972 1.00 10.61 O HETATM 147 O9 DM6 A 7 11.781 10.712 6.951 1.00 8.81 O HETATM 148 O11 DM6 A 7 11.707 14.793 4.911 1.00 6.75 O HETATM 149 O12 DM6 A 7 12.974 16.876 5.016 1.00 8.53 O HETATM 150 O13 DM6 A 7 9.775 10.271 4.279 1.00 12.89 O HETATM 151 O14 DM6 A 7 8.943 7.989 5.886 1.00 12.74 O HETATM 152 C1' DM6 A 7 15.570 9.166 6.461 1.00 12.28 C HETATM 153 C2' DM6 A 7 16.718 9.419 7.373 1.00 13.21 C HETATM 154 C3' DM6 A 7 16.217 9.662 8.842 1.00 14.16 C HETATM 155 C4' DM6 A 7 15.406 8.397 9.242 1.00 14.02 C HETATM 156 C5' DM6 A 7 14.201 8.281 8.279 1.00 14.28 C HETATM 157 C6' DM6 A 7 13.246 7.120 8.707 1.00 14.63 C HETATM 158 O4' DM6 A 7 14.907 8.333 10.583 1.00 13.95 O HETATM 159 O5' DM6 A 7 14.689 8.090 6.904 1.00 13.68 O HETATM 160 N3' DM6 A 7 17.418 9.968 9.641 1.00 14.07 N HETATM 161 N1 SPM A 8 20.221 19.325 11.803 1.00 36.87 N HETATM 162 C2 SPM A 8 20.784 18.108 10.962 1.00 36.74 C HETATM 163 C3 SPM A 8 20.840 18.423 9.458 1.00 37.16 C HETATM 164 C4 SPM A 8 19.980 19.672 9.197 1.00 37.75 C HETATM 165 N5 SPM A 8 18.770 19.446 8.308 1.00 38.47 N HETATM 166 C6 SPM A 8 17.579 20.328 8.761 1.00 39.06 C HETATM 167 C7 SPM A 8 16.801 20.995 7.624 1.00 39.91 C HETATM 168 C8 SPM A 8 15.403 21.555 7.948 1.00 40.15 C HETATM 169 C9 SPM A 8 14.367 20.434 8.317 1.00 40.50 C HETATM 170 N10 SPM A 8 13.279 20.990 9.305 1.00 40.83 N HETATM 171 C11 SPM A 8 13.598 20.636 10.802 1.00 40.66 C HETATM 172 C12 SPM A 8 14.793 21.465 11.292 1.00 41.13 C HETATM 173 C13 SPM A 8 15.515 20.971 12.568 1.00 41.26 C HETATM 174 N14 SPM A 8 14.588 21.155 13.795 1.00 41.10 N HETATM 175 O HOH A 9 15.950 19.110 24.968 1.00 36.71 O HETATM 176 O HOH A 10 9.262 21.015 20.115 1.00 25.83 O HETATM 177 O HOH A 11 8.857 24.041 20.369 1.00 27.08 O HETATM 178 O HOH A 12 3.711 16.409 19.881 1.00 35.94 O HETATM 179 O HOH A 13 26.024 8.041 20.827 1.00 34.31 O HETATM 180 O HOH A 14 22.613 19.074 7.122 1.00 50.60 O HETATM 181 O HOH A 15 17.463 16.930 1.152 1.00 17.89 O HETATM 182 O HOH A 16 19.982 14.454 2.701 1.00 21.53 O HETATM 183 O HOH A 17 26.657 9.729 19.026 1.00 49.49 O HETATM 184 O HOH A 18 8.619 14.085 25.149 1.00 33.56 O HETATM 185 O HOH A 19 18.470 11.277 13.847 1.00 23.18 O HETATM 186 O HOH A 20 17.932 7.576 15.019 1.00 34.24 O HETATM 187 O HOH A 21 10.433 25.437 21.993 1.00 49.15 O HETATM 188 O HOH A 22 2.812 13.467 7.994 1.00 53.76 O HETATM 189 O HOH A 23 12.697 18.428 11.666 1.00 33.14 O HETATM 190 O HOH A 24 8.990 14.918 12.091 1.00 27.89 O HETATM 191 O HOH A 25 9.186 17.469 18.537 1.00 39.09 O HETATM 192 O HOH A 26 11.471 22.088 19.027 1.00 39.82 O HETATM 193 O HOH A 27 15.136 5.951 1.882 1.00 46.48 O HETATM 194 O HOH A 28 11.581 5.816 26.128 1.00 38.47 O HETATM 195 O HOH A 29 18.184 4.488 13.771 1.00 54.87 O HETATM 196 O HOH A 30 17.058 6.764 12.327 1.00 42.47 O HETATM 197 O HOH A 31 8.827 26.917 18.535 1.00 68.83 O HETATM 198 O HOH A 32 10.360 17.503 12.205 1.00 54.10 O HETATM 199 O HOH A 33 24.278 11.338 19.074 1.00 51.85 O HETATM 200 O HOH A 34 25.905 13.336 15.192 1.00 64.43 O HETATM 201 O HOH A 35 18.320 22.021 12.912 1.00 41.36 O HETATM 202 O HOH A 36 5.167 16.530 14.230 1.00 60.95 O HETATM 203 O HOH A 37 25.438 6.098 11.261 1.00 31.05 O HETATM 204 O HOH A 38 17.553 2.360 5.022 1.00 53.54 O HETATM 205 O HOH A 39 14.078 8.572 1.270 1.00 38.00 O HETATM 206 O HOH A 40 10.982 9.254 0.624 1.00 43.08 O HETATM 207 O HOH A 41 19.839 7.065 8.726 1.00 34.13 O HETATM 208 O HOH A 42 22.381 7.632 7.824 1.00 46.27 O HETATM 209 O HOH A 43 5.726 14.229 23.332 1.00 55.15 O HETATM 210 O HOH A 44 20.915 23.192 14.238 1.00 54.66 O HETATM 211 O HOH A 45 7.971 17.796 11.439 1.00 58.34 O HETATM 212 O HOH A 46 22.356 18.478 24.029 1.00 53.74 O CONECT 122 123 136 CONECT 123 122 124 CONECT 124 123 125 CONECT 125 124 137 143 CONECT 126 137 138 144 CONECT 127 138 141 145 CONECT 128 129 141 146 CONECT 129 128 130 CONECT 130 129 131 134 147 CONECT 131 130 140 CONECT 132 139 140 148 CONECT 133 136 139 149 CONECT 134 130 135 150 CONECT 135 134 151 CONECT 136 122 133 137 CONECT 137 125 126 136 CONECT 138 126 127 139 CONECT 139 132 133 138 CONECT 140 131 132 141 CONECT 141 127 128 140 CONECT 142 143 CONECT 143 125 142 CONECT 144 126 CONECT 145 127 CONECT 146 128 152 CONECT 147 130 CONECT 148 132 CONECT 149 133 CONECT 150 134 CONECT 151 135 CONECT 152 146 153 159 CONECT 153 152 154 CONECT 154 153 155 160 CONECT 155 154 156 158 CONECT 156 155 157 159 CONECT 157 156 CONECT 158 155 CONECT 159 152 156 CONECT 160 154 CONECT 161 162 CONECT 162 161 163 CONECT 163 162 164 CONECT 164 163 165 CONECT 165 164 166 CONECT 166 165 167 CONECT 167 166 168 CONECT 168 167 169 CONECT 169 168 170 CONECT 170 169 171 CONECT 171 170 172 CONECT 172 171 173 CONECT 173 172 174 CONECT 174 173 MASTER 330 0 2 0 0 0 6 6 211 1 53 1 END