HEADER DNA 08-AUG-90 1D17 TITLE DNA-NOGALAMYCIN INTERACTIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*(5CM)P*GP*TP*AP*(5CM)P*G)-3'); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, MODIFIED, DNA EXPDTA X-RAY DIFFRACTION AUTHOR M.EGLI,L.D.WILLIAMS,C.A.FREDERICK,A.RICH REVDAT 4 07-FEB-24 1D17 1 REMARK LINK REVDAT 3 24-AUG-11 1D17 1 ATOM SITE VERSN REVDAT 2 24-FEB-09 1D17 1 VERSN REVDAT 1 15-JUL-91 1D17 0 JRNL AUTH M.EGLI,L.D.WILLIAMS,C.A.FREDERICK,A.RICH JRNL TITL DNA-NOGALAMYCIN INTERACTIONS. JRNL REF BIOCHEMISTRY V. 30 1364 1991 JRNL REFN ISSN 0006-2960 JRNL PMID 1991116 JRNL DOI 10.1021/BI00219A029 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.D.WILLIAMS,M.EGLI,Q.GAO,P.BASH,G.A.VAN DER MAREL, REMARK 1 AUTH 2 J.H.VAN BOOM,A.RICH,C.A.FREDERICK REMARK 1 TITL STRUCTURE OF NOGALAMYCIN BOUND TO A DNA HEXAMER REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 87 2225 1990 REMARK 1 REFN ISSN 0027-8424 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 809 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 122 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 39 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1D17 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000172622. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 300.00 REMARK 200 PH : 6.00 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : DIFFRACTOMETER REMARK 200 DETECTOR MANUFACTURER : RIGAKU AFC-5 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.00, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.33667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 66.67333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 50.00500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 83.34167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 16.66833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 33.33667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 66.67333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 83.34167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 50.00500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 16.66833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 26.30000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 50.00500 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT A 3 C5 DT A 3 C7 0.054 REMARK 500 DA A 4 N9 DA A 4 C4 -0.037 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 5CM A 1 C3' - O3' - P ANGL. DEV. = 9.0 DEGREES REMARK 500 DG A 2 C5' - C4' - O4' ANGL. DEV. = 6.6 DEGREES REMARK 500 DG A 2 C1' - O4' - C4' ANGL. DEV. = -9.2 DEGREES REMARK 500 DG A 2 O4' - C1' - C2' ANGL. DEV. = -5.5 DEGREES REMARK 500 DG A 2 O4' - C1' - N9 ANGL. DEV. = 7.1 DEGREES REMARK 500 DT A 3 O4' - C1' - N1 ANGL. DEV. = 7.6 DEGREES REMARK 500 DA A 4 O4' - C1' - N9 ANGL. DEV. = -4.3 DEGREES REMARK 500 DA A 4 C5 - N7 - C8 ANGL. DEV. = -3.2 DEGREES REMARK 500 DA A 4 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 DA A 4 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES REMARK 500 DG A 6 O4' - C1' - N9 ANGL. DEV. = 4.0 DEGREES REMARK 500 DG A 6 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES REMARK 500 DG A 6 N9 - C4 - C5 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG A 6 N1 - C6 - O6 ANGL. DEV. = -4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DT A 3 0.13 SIDE CHAIN REMARK 500 DA A 4 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NGM A 7 DBREF 1D17 A 1 6 PDB 1D17 1D17 1 6 SEQRES 1 A 6 5CM DG DT DA 5CM DG MODRES 1D17 5CM A 1 DC MODRES 1D17 5CM A 5 DC HET 5CM A 1 17 HET 5CM A 5 20 HET NGM A 7 56 HETNAM 5CM 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE HETNAM NGM NOGALAMYCIN FORMUL 1 5CM 2(C10 H16 N3 O7 P) FORMUL 2 NGM C39 H49 N O16 FORMUL 3 HOH *39(H2 O) LINK O3' 5CM A 1 P DG A 2 1555 1555 1.66 LINK O3' DA A 4 P 5CM A 5 1555 1555 1.62 LINK O3' 5CM A 5 P DG A 6 1555 1555 1.64 SITE 1 AC1 12 5CM A 1 DG A 2 DT A 3 DA A 4 SITE 2 AC1 12 5CM A 5 DG A 6 HOH A 35 HOH A 38 SITE 3 AC1 12 HOH A 41 HOH A 42 HOH A 44 HOH A 46 CRYST1 26.300 26.300 100.010 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.038023 0.021952 0.000000 0.00000 SCALE2 0.000000 0.043905 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009999 0.00000 HETATM 1 N1 5CM A 1 1.634 20.377 27.209 1.00 15.83 N HETATM 2 C2 5CM A 1 1.517 19.002 27.038 1.00 14.79 C HETATM 3 N3 5CM A 1 1.535 18.496 25.788 1.00 13.80 N HETATM 4 C4 5CM A 1 1.697 19.262 24.703 1.00 13.40 C HETATM 5 C5 5CM A 1 1.774 20.694 24.848 1.00 13.76 C HETATM 6 C5A 5CM A 1 1.833 21.642 23.638 1.00 12.91 C HETATM 7 C6 5CM A 1 1.795 21.193 26.106 1.00 14.81 C HETATM 8 O2 5CM A 1 1.351 18.260 27.997 1.00 15.21 O HETATM 9 N4 5CM A 1 1.854 18.671 23.526 1.00 11.96 N HETATM 10 C1' 5CM A 1 1.390 20.983 28.564 1.00 16.89 C HETATM 11 C2' 5CM A 1 2.168 20.423 29.741 1.00 17.85 C HETATM 12 C3' 5CM A 1 3.532 21.055 29.602 1.00 18.57 C HETATM 13 C4' 5CM A 1 3.124 22.442 29.127 1.00 18.33 C HETATM 14 O4' 5CM A 1 1.764 22.371 28.639 1.00 17.51 O HETATM 15 O3' 5CM A 1 4.431 21.038 30.741 1.00 19.58 O HETATM 16 C5' 5CM A 1 4.071 22.884 28.036 1.00 18.22 C HETATM 17 O5' 5CM A 1 3.944 24.286 27.809 1.00 18.27 O ATOM 18 P DG A 2 4.712 22.230 31.855 1.00 20.84 P ATOM 19 OP1 DG A 2 3.390 22.598 32.411 1.00 20.85 O ATOM 20 OP2 DG A 2 5.599 23.313 31.341 1.00 21.36 O ATOM 21 O5' DG A 2 5.639 21.470 32.911 1.00 19.55 O ATOM 22 C5' DG A 2 5.524 20.071 33.173 1.00 18.18 C ATOM 23 C4' DG A 2 6.512 19.285 32.353 1.00 16.98 C ATOM 24 O4' DG A 2 6.262 19.221 30.937 1.00 15.27 O ATOM 25 C3' DG A 2 7.937 19.858 32.550 1.00 16.55 C ATOM 26 O3' DG A 2 8.778 18.780 32.956 1.00 17.32 O ATOM 27 C2' DG A 2 8.303 20.176 31.154 1.00 15.23 C ATOM 28 C1' DG A 2 7.596 19.052 30.434 1.00 14.10 C ATOM 29 N9 DG A 2 7.737 19.166 28.995 1.00 12.09 N ATOM 30 C8 DG A 2 7.686 20.276 28.237 1.00 11.14 C ATOM 31 N7 DG A 2 7.762 20.076 26.982 1.00 10.81 N ATOM 32 C5 DG A 2 8.021 18.709 26.884 1.00 10.49 C ATOM 33 C6 DG A 2 8.238 17.904 25.747 1.00 10.05 C ATOM 34 O6 DG A 2 8.335 18.256 24.573 1.00 9.47 O ATOM 35 N1 DG A 2 8.322 16.575 26.069 1.00 9.60 N ATOM 36 C2 DG A 2 8.246 16.075 27.325 1.00 10.32 C ATOM 37 N2 DG A 2 8.373 14.772 27.427 1.00 10.43 N ATOM 38 N3 DG A 2 8.110 16.814 28.416 1.00 10.79 N ATOM 39 C4 DG A 2 7.936 18.124 28.109 1.00 11.30 C ATOM 40 P DT A 3 9.441 18.723 34.415 1.00 17.60 P ATOM 41 OP1 DT A 3 8.366 18.867 35.433 1.00 17.98 O ATOM 42 OP2 DT A 3 10.569 19.685 34.368 1.00 18.07 O ATOM 43 O5' DT A 3 10.040 17.207 34.491 1.00 15.85 O ATOM 44 C5' DT A 3 9.198 16.048 34.311 1.00 13.06 C ATOM 45 C4' DT A 3 9.656 15.228 33.131 1.00 11.01 C ATOM 46 O4' DT A 3 9.612 16.085 31.960 1.00 10.15 O ATOM 47 C3' DT A 3 11.147 14.810 33.322 1.00 10.21 C ATOM 48 O3' DT A 3 11.312 13.449 33.742 1.00 9.40 O ATOM 49 C2' DT A 3 11.716 15.075 31.911 1.00 9.59 C ATOM 50 C1' DT A 3 10.533 15.482 31.016 1.00 8.80 C ATOM 51 N1 DT A 3 10.981 16.359 29.885 1.00 6.99 N ATOM 52 C2 DT A 3 11.263 15.741 28.716 1.00 5.88 C ATOM 53 O2 DT A 3 11.306 14.519 28.636 1.00 5.94 O ATOM 54 N3 DT A 3 11.540 16.551 27.650 1.00 5.41 N ATOM 55 C4 DT A 3 11.422 17.910 27.627 1.00 5.49 C ATOM 56 O4 DT A 3 11.397 18.555 26.593 1.00 4.13 O ATOM 57 C5 DT A 3 11.295 18.481 28.930 1.00 6.09 C ATOM 58 C7 DT A 3 11.371 20.026 29.028 1.00 6.63 C ATOM 59 C6 DT A 3 11.104 17.704 30.007 1.00 6.28 C ATOM 60 P DA A 4 12.739 12.766 34.002 1.00 9.17 P ATOM 61 OP1 DA A 4 12.519 11.389 34.510 1.00 8.86 O ATOM 62 OP2 DA A 4 13.524 13.736 34.772 1.00 8.79 O ATOM 63 O5' DA A 4 13.433 12.509 32.587 1.00 9.50 O ATOM 64 C5' DA A 4 12.977 11.341 31.845 1.00 9.43 C ATOM 65 C4' DA A 4 13.641 11.037 30.478 1.00 9.24 C ATOM 66 O4' DA A 4 13.505 12.130 29.579 1.00 8.39 O ATOM 67 C3' DA A 4 15.128 10.795 30.645 1.00 10.15 C ATOM 68 O3' DA A 4 15.309 9.374 30.562 1.00 12.67 O ATOM 69 C2' DA A 4 15.723 11.586 29.470 1.00 9.21 C ATOM 70 C1' DA A 4 14.574 12.085 28.634 1.00 7.55 C ATOM 71 N9 DA A 4 14.795 13.493 28.291 1.00 6.23 N ATOM 72 C8 DA A 4 14.845 14.564 29.100 1.00 5.04 C ATOM 73 N7 DA A 4 14.867 15.725 28.550 1.00 4.26 N ATOM 74 C5 DA A 4 14.776 15.380 27.226 1.00 4.86 C ATOM 75 C6 DA A 4 14.746 16.138 26.081 1.00 4.41 C ATOM 76 N6 DA A 4 14.747 17.457 26.127 1.00 5.12 N ATOM 77 N1 DA A 4 14.670 15.520 24.899 1.00 4.67 N ATOM 78 C2 DA A 4 14.692 14.199 24.874 1.00 5.26 C ATOM 79 N3 DA A 4 14.691 13.354 25.917 1.00 5.88 N ATOM 80 C4 DA A 4 14.771 14.032 27.068 1.00 5.39 C HETATM 81 N1 5CM A 5 18.541 13.341 27.150 1.00 10.82 N HETATM 82 C2 5CM A 5 18.132 14.181 26.131 1.00 10.43 C HETATM 83 N3 5CM A 5 17.949 15.482 26.436 1.00 9.76 N HETATM 84 C4 5CM A 5 18.072 15.963 27.640 1.00 8.83 C HETATM 85 C5 5CM A 5 18.479 15.109 28.688 1.00 9.72 C HETATM 86 C5A 5CM A 5 18.622 15.634 30.148 1.00 10.44 C HETATM 87 C6 5CM A 5 18.685 13.815 28.400 1.00 10.31 C HETATM 88 O2 5CM A 5 17.945 13.831 24.957 1.00 9.64 O HETATM 89 N4 5CM A 5 17.745 17.223 27.816 1.00 7.31 N HETATM 90 C1' 5CM A 5 18.908 11.942 26.825 1.00 12.63 C HETATM 91 C2' 5CM A 5 20.387 11.692 27.204 1.00 14.17 C HETATM 92 C3' 5CM A 5 20.558 10.205 27.544 1.00 14.98 C HETATM 93 C4' 5CM A 5 19.063 9.813 27.750 1.00 14.39 C HETATM 94 O4' 5CM A 5 18.201 10.990 27.606 1.00 13.29 O HETATM 95 O3' 5CM A 5 21.364 9.471 26.581 1.00 16.94 O HETATM 96 C5' 5CM A 5 18.905 9.338 29.209 1.00 14.35 C HETATM 97 O5' 5CM A 5 17.515 9.181 29.423 1.00 14.03 O HETATM 98 P 5CM A 5 16.727 8.597 30.664 1.00 13.79 P HETATM 99 OP1 5CM A 5 16.454 7.146 30.398 1.00 14.36 O HETATM 100 OP2 5CM A 5 17.407 9.018 31.910 1.00 14.73 O ATOM 101 P DG A 6 22.043 7.999 26.850 1.00 17.85 P ATOM 102 OP1 DG A 6 20.936 7.015 26.971 1.00 18.23 O ATOM 103 OP2 DG A 6 22.993 8.183 27.982 1.00 18.47 O ATOM 104 O5' DG A 6 22.825 7.539 25.572 1.00 17.32 O ATOM 105 C5' DG A 6 24.080 7.998 25.034 1.00 17.05 C ATOM 106 C4' DG A 6 23.784 8.516 23.631 1.00 15.93 C ATOM 107 O4' DG A 6 23.126 9.808 23.808 1.00 15.49 O ATOM 108 C3' DG A 6 25.014 8.726 22.708 1.00 15.91 C ATOM 109 O3' DG A 6 24.776 8.408 21.332 1.00 16.48 O ATOM 110 C2' DG A 6 25.295 10.200 22.913 1.00 15.01 C ATOM 111 C1' DG A 6 23.991 10.853 23.312 1.00 14.13 C ATOM 112 N9 DG A 6 24.275 11.879 24.336 1.00 11.97 N ATOM 113 C8 DG A 6 24.282 11.827 25.703 1.00 11.47 C ATOM 114 N7 DG A 6 24.455 12.984 26.315 1.00 10.54 N ATOM 115 C5 DG A 6 24.569 13.895 25.238 1.00 10.51 C ATOM 116 C6 DG A 6 24.767 15.316 25.185 1.00 9.65 C ATOM 117 O6 DG A 6 24.812 16.171 26.062 1.00 8.36 O ATOM 118 N1 DG A 6 24.883 15.776 23.911 1.00 9.38 N ATOM 119 C2 DG A 6 24.782 15.039 22.793 1.00 10.45 C ATOM 120 N2 DG A 6 25.047 15.653 21.637 1.00 10.59 N ATOM 121 N3 DG A 6 24.550 13.740 22.809 1.00 11.34 N ATOM 122 C4 DG A 6 24.491 13.219 24.052 1.00 11.27 C TER 123 DG A 6 HETATM 124 C1 NGM A 7 5.177 19.491 24.136 1.00 6.39 C HETATM 125 C2 NGM A 7 5.293 19.483 22.774 1.00 7.10 C HETATM 126 C3 NGM A 7 5.228 18.292 22.070 1.00 6.39 C HETATM 127 C4 NGM A 7 5.116 17.095 22.742 1.00 5.43 C HETATM 128 C5 NGM A 7 4.920 15.812 24.839 1.00 4.67 C HETATM 129 C6 NGM A 7 4.796 14.591 26.986 1.00 6.30 C HETATM 130 C7 NGM A 7 4.577 13.232 29.151 1.00 9.80 C HETATM 131 C8 NGM A 7 4.175 13.449 30.578 1.00 10.03 C HETATM 132 C9 NGM A 7 4.936 14.574 31.329 1.00 9.82 C HETATM 133 C10 NGM A 7 4.646 15.881 30.600 1.00 9.15 C HETATM 134 C11 NGM A 7 4.832 16.937 28.376 1.00 5.97 C HETATM 135 C12 NGM A 7 4.932 18.278 26.340 1.00 5.45 C HETATM 136 C13 NGM A 7 6.451 14.388 31.445 1.00 10.17 C HETATM 137 C14 NGM A 7 3.250 16.350 30.932 1.00 9.98 C HETATM 138 C15 NGM A 7 2.319 18.130 32.011 1.00 11.42 C HETATM 139 C16 NGM A 7 5.031 18.300 24.836 1.00 5.83 C HETATM 140 C17 NGM A 7 5.018 17.097 24.126 1.00 5.32 C HETATM 141 C18 NGM A 7 4.849 15.790 26.311 1.00 5.12 C HETATM 142 C19 NGM A 7 4.741 14.558 28.393 1.00 8.04 C HETATM 143 C20 NGM A 7 4.765 15.766 29.076 1.00 7.73 C HETATM 144 C21 NGM A 7 4.869 16.963 27.022 1.00 5.27 C HETATM 145 C22 NGM A 7 5.230 20.927 20.659 1.00 8.55 C HETATM 146 C23 NGM A 7 10.233 21.698 24.299 1.00 12.79 C HETATM 147 C24 NGM A 7 9.832 22.136 22.036 1.00 13.15 C HETATM 148 C25 NGM A 7 6.195 10.141 32.329 1.00 17.86 C HETATM 149 C26 NGM A 7 9.381 8.361 31.145 1.00 19.49 C HETATM 150 C27 NGM A 7 10.790 11.031 28.519 1.00 18.92 C HETATM 151 C28 NGM A 7 8.862 12.304 29.961 1.00 17.45 C HETATM 152 C29 NGM A 7 6.677 9.687 26.476 1.00 17.90 C HETATM 153 C30 NGM A 7 5.767 21.951 24.141 1.00 8.69 C HETATM 154 C31 NGM A 7 7.278 22.208 24.178 1.00 9.24 C HETATM 155 C32 NGM A 7 7.984 21.086 23.424 1.00 10.05 C HETATM 156 C33 NGM A 7 7.271 20.828 22.075 1.00 9.05 C HETATM 157 C34 NGM A 7 5.725 20.789 22.095 1.00 8.15 C HETATM 158 C1' NGM A 7 6.000 11.292 28.860 1.00 15.87 C HETATM 159 C2' NGM A 7 7.424 10.982 28.316 1.00 17.26 C HETATM 160 C3' NGM A 7 8.511 10.922 29.393 1.00 17.83 C HETATM 161 C4' NGM A 7 7.883 9.987 30.399 1.00 18.38 C HETATM 162 C5' NGM A 7 6.630 10.668 30.978 1.00 18.15 C HETATM 163 N1 NGM A 7 9.432 21.260 23.160 1.00 11.75 N HETATM 164 O1 NGM A 7 5.404 20.722 24.822 1.00 7.82 O HETATM 165 O2 NGM A 7 5.272 21.965 22.798 1.00 8.48 O HETATM 166 O4 NGM A 7 5.180 15.903 22.036 1.00 4.34 O HETATM 167 O5 NGM A 7 4.957 14.779 24.205 1.00 3.55 O HETATM 168 O6 NGM A 7 4.907 13.429 26.260 1.00 4.50 O HETATM 169 O7 NGM A 7 5.842 12.635 29.231 1.00 13.01 O HETATM 170 O9 NGM A 7 4.554 14.563 32.738 1.00 10.40 O HETATM 171 O10 NGM A 7 3.440 17.664 31.317 1.00 10.73 O HETATM 172 O14 NGM A 7 2.251 15.633 31.129 1.00 10.04 O HETATM 173 O12 NGM A 7 4.880 19.307 27.033 1.00 4.59 O HETATM 174 O15 NGM A 7 7.746 22.278 25.553 1.00 9.45 O HETATM 175 O16 NGM A 7 7.940 19.656 21.586 1.00 8.67 O HETATM 176 O1' NGM A 7 5.629 10.503 29.961 1.00 17.34 O HETATM 177 O2' NGM A 7 7.313 9.672 27.711 1.00 17.88 O HETATM 178 O3' NGM A 7 9.704 10.255 28.920 1.00 18.56 O HETATM 179 O4' NGM A 7 8.858 9.621 31.390 1.00 19.33 O HETATM 180 O HOH A 8 4.390 14.645 19.042 1.00 53.72 O HETATM 181 O HOH A 9 1.628 17.083 20.608 1.00 23.55 O HETATM 182 O HOH A 10 0.588 12.625 19.037 1.00 23.89 O HETATM 183 O HOH A 11 2.186 14.080 20.753 1.00 9.93 O HETATM 184 O HOH A 12 15.132 10.765 25.362 1.00 35.21 O HETATM 185 O HOH A 13 11.436 18.264 19.759 1.00 11.00 O HETATM 186 O HOH A 14 11.558 23.163 31.817 1.00 17.89 O HETATM 187 O HOH A 15 14.525 15.784 33.608 1.00 19.22 O HETATM 188 O HOH A 16 2.266 3.832 31.551 1.00 51.96 O HETATM 189 O HOH A 17 4.289 20.118 36.776 1.00 18.15 O HETATM 190 O HOH A 18 3.574 11.238 20.210 1.00 29.43 O HETATM 191 O HOH A 19 18.150 12.176 31.448 1.00 24.21 O HETATM 192 O HOH A 20 12.289 25.454 23.050 1.00 16.35 O HETATM 193 O HOH A 21 14.942 23.425 22.076 1.00 43.47 O HETATM 194 O HOH A 22 4.690 14.095 36.728 1.00 23.99 O HETATM 195 O HOH A 23 9.491 11.181 36.439 1.00 20.23 O HETATM 196 O HOH A 24 3.151 23.800 25.129 1.00 23.16 O HETATM 197 O HOH A 25 8.351 26.788 22.113 1.00 6.24 O HETATM 198 O HOH A 26 4.345 27.456 23.874 1.00 24.48 O HETATM 199 O HOH A 27 10.770 28.259 21.403 1.00 21.90 O HETATM 200 O HOH A 28 10.566 26.534 26.149 1.00 2.64 O HETATM 201 O HOH A 29 6.267 24.341 29.008 1.00 6.80 O HETATM 202 O HOH A 30 8.023 13.562 35.360 1.00 15.25 O HETATM 203 O HOH A 31 16.344 13.781 32.818 1.00 34.72 O HETATM 204 O HOH A 32 2.596 26.858 34.540 1.00 25.00 O HETATM 205 O HOH A 33 3.574 25.970 31.763 1.00 25.00 O HETATM 206 O HOH A 34 27.068 7.076 19.675 1.00 42.51 O HETATM 207 O HOH A 35 3.340 8.992 30.574 1.00 11.08 O HETATM 208 O HOH A 36 3.760 9.193 17.863 1.00 60.61 O HETATM 209 O HOH A 37 11.466 5.563 23.513 1.00 54.11 O HETATM 210 O HOH A 38 13.281 17.700 35.517 1.00 51.51 O HETATM 211 O HOH A 39 14.415 22.392 30.650 1.00 16.83 O HETATM 212 O HOH A 40 11.994 20.360 32.102 1.00 12.07 O HETATM 213 O HOH A 41 10.559 7.468 28.132 1.00 20.56 O HETATM 214 O HOH A 42 9.490 11.309 33.586 1.00 41.13 O HETATM 215 O HOH A 43 7.427 26.106 27.108 1.00 29.92 O HETATM 216 O HOH A 44 11.929 19.959 22.416 1.00 13.24 O HETATM 217 O HOH A 45 6.050 25.377 24.706 1.00 40.61 O HETATM 218 O HOH A 46 9.192 24.593 23.697 1.00 37.86 O CONECT 1 2 7 10 CONECT 2 1 3 8 CONECT 3 2 4 CONECT 4 3 5 9 CONECT 5 4 6 7 CONECT 6 5 CONECT 7 1 5 CONECT 8 2 CONECT 9 4 CONECT 10 1 11 14 CONECT 11 10 12 CONECT 12 11 13 15 CONECT 13 12 14 16 CONECT 14 10 13 CONECT 15 12 18 CONECT 16 13 17 CONECT 17 16 CONECT 18 15 CONECT 68 98 CONECT 81 82 87 90 CONECT 82 81 83 88 CONECT 83 82 84 CONECT 84 83 85 89 CONECT 85 84 86 87 CONECT 86 85 CONECT 87 81 85 CONECT 88 82 CONECT 89 84 CONECT 90 81 91 94 CONECT 91 90 92 CONECT 92 91 93 95 CONECT 93 92 94 96 CONECT 94 90 93 CONECT 95 92 101 CONECT 96 93 97 CONECT 97 96 98 CONECT 98 68 97 99 100 CONECT 99 98 CONECT 100 98 CONECT 101 95 CONECT 124 125 139 164 CONECT 125 124 126 157 CONECT 126 125 127 CONECT 127 126 140 166 CONECT 128 140 141 167 CONECT 129 141 142 168 CONECT 130 131 142 169 CONECT 131 130 132 CONECT 132 131 133 136 170 CONECT 133 132 137 143 CONECT 134 143 144 CONECT 135 139 144 173 CONECT 136 132 CONECT 137 133 171 172 CONECT 138 171 CONECT 139 124 135 140 CONECT 140 127 128 139 CONECT 141 128 129 144 CONECT 142 129 130 143 CONECT 143 133 134 142 CONECT 144 134 135 141 CONECT 145 157 CONECT 146 163 CONECT 147 163 CONECT 148 162 CONECT 149 179 CONECT 150 178 CONECT 151 160 CONECT 152 177 CONECT 153 154 164 165 CONECT 154 153 155 174 CONECT 155 154 156 163 CONECT 156 155 157 175 CONECT 157 125 145 156 165 CONECT 158 159 169 176 CONECT 159 158 160 177 CONECT 160 151 159 161 178 CONECT 161 160 162 179 CONECT 162 148 161 176 CONECT 163 146 147 155 CONECT 164 124 153 CONECT 165 153 157 CONECT 166 127 CONECT 167 128 CONECT 168 129 CONECT 169 130 158 CONECT 170 132 CONECT 171 137 138 CONECT 172 137 CONECT 173 135 CONECT 174 154 CONECT 175 156 CONECT 176 158 162 CONECT 177 152 159 CONECT 178 150 160 CONECT 179 149 161 MASTER 314 0 3 0 0 0 3 6 217 1 96 1 END