data_1O55 # _entry.id 1O55 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1O55 pdb_00001o55 10.2210/pdb1o55/pdb NDB UD0038 ? ? RCSB rcsb001815 ? ? WWPDB D_1000001815 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-08-26 2 'Structure model' 1 1 2008-04-26 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-04 5 'Structure model' 1 4 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_struct_conn_angle 6 5 'Structure model' struct_conn 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.name' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.value' 11 5 'Structure model' '_struct_conn.pdbx_dist_value' 12 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 13 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 14 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 15 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 16 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 17 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 18 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 19 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 20 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 21 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 22 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 23 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 24 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 25 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 26 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.pdb_id 1O55 _pdbx_database_PDB_obs_spr.replace_pdb_id 415d _pdbx_database_PDB_obs_spr.date 2003-08-26 _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1O55 _pdbx_database_status.recvd_initial_deposition_date 2003-08-20 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gao, Y.G.' 1 'Robinson, H.' 2 'Guan, Y.' 3 'Liaw, Y.C.' 4 'van Boom, J.H.' 5 'van der Marel, G.A.' 6 'Wang, A.H.' 7 # _citation.id primary _citation.title 'Molecular structure of two crystal forms of cyclic triadenylic acid at 1A resolution.' _citation.journal_abbrev J.Biomol.Struct.Dyn. _citation.journal_volume 16 _citation.page_first 69 _citation.page_last 76 _citation.year 1998 _citation.journal_id_ASTM JBSDD6 _citation.country US _citation.journal_id_ISSN 0739-1102 _citation.journal_id_CSD 0646 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9745896 _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gao, Y.G.' 1 ? primary 'Robinson, H.' 2 ? primary 'Guan, Y.' 3 ? primary 'Liaw, Y.C.' 4 ? primary 'van Boom, J.H.' 5 ? primary 'van der Marel, G.A.' 6 ? primary 'Wang, A.H.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-CD(*AP*AP*AP)-3') ; 894.663 2 ? ? ? ? 2 non-polymer syn 'COBALT (II) ION' 58.933 1 ? ? ? ? 3 water nat water 18.015 23 ? ? ? ? # _entity_keywords.entity_id 1 _entity_keywords.text 'CYCLIC TRINUCLEOTIDE' # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DA)(DA)(DA)' _entity_poly.pdbx_seq_one_letter_code_can AAA _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'COBALT (II) ION' CO 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DA n 1 3 DA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details Synthetic # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CO non-polymer . 'COBALT (II) ION' ? 'Co 2' 58.933 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 2 2 DA A A . n A 1 2 DA 2 3 ? ? ? A . n A 1 3 DA 3 4 ? ? ? A . n B 1 1 DA 1 5 5 DA A B . n B 1 2 DA 2 6 ? ? ? B . n B 1 3 DA 3 7 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CO 1 8 7 CO OCO B . D 3 HOH 1 103 103 HOH HOH A . D 3 HOH 2 104 104 HOH HOH A . D 3 HOH 3 108 108 HOH HOH A . D 3 HOH 4 109 109 HOH HOH A . D 3 HOH 5 112 112 HOH HOH A . D 3 HOH 6 113 113 HOH HOH A . D 3 HOH 7 114 114 HOH HOH A . D 3 HOH 8 117 117 HOH HOH A . D 3 HOH 9 121 7 HOH OCO A . D 3 HOH 10 122 7 HOH OCO A . E 3 HOH 1 101 101 HOH HOH B . E 3 HOH 2 102 102 HOH HOH B . E 3 HOH 3 105 105 HOH HOH B . E 3 HOH 4 106 106 HOH HOH B . E 3 HOH 5 107 107 HOH HOH B . E 3 HOH 6 110 110 HOH HOH B . E 3 HOH 7 111 111 HOH HOH B . E 3 HOH 8 115 115 HOH HOH B . E 3 HOH 9 116 116 HOH HOH B . E 3 HOH 10 118 7 HOH OCO B . E 3 HOH 11 119 7 HOH OCO B . E 3 HOH 12 120 7 HOH OCO B . E 3 HOH 13 123 7 HOH OCO B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal bioteX 'data collection' . ? 1 bioteX 'data reduction' . ? 2 SHELXS phasing . ? 3 SHELXL-97 refinement . ? 4 bioteX 'data scaling' . ? 5 # _cell.entry_id 1O55 _cell.length_a 22.637 _cell.length_b 22.637 _cell.length_c 44.581 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1O55 _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting hexagonal _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1O55 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.67 _exptl_crystal.density_percent_sol 26.0000 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298.00 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.50 _exptl_crystal_grow.pdbx_details 'pH 4.50, VAPOR DIFFUSION, HANGING DROP, temperature 298.00K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 COCL3 ? ? ? 1 2 1 GLYCINE ? ? ? 1 3 1 MPD ? ? ? 1 4 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 123.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type RIGAKU _diffrn_detector.pdbx_collection_date 1997-12-29 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1O55 _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F 0.000 _reflns.d_resolution_low 10.000 _reflns.d_resolution_high 1.040 _reflns.number_obs 2198 _reflns.number_all 2198 _reflns.percent_possible_obs 95.400 _reflns.pdbx_Rmerge_I_obs 0.044 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.500 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1O55 _refine.ls_number_reflns_obs 2198 _refine.ls_number_reflns_all 2198 _refine.pdbx_ls_sigma_I 0.00 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.000 _refine.ls_d_res_high 1.040 _refine.ls_percent_reflns_obs 97.200 _refine.ls_R_factor_obs 0.138 _refine.ls_R_factor_all 0.144 _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 42 _refine_hist.pdbx_number_atoms_ligand 7 _refine_hist.number_atoms_solvent 17 _refine_hist.number_atoms_total 66 _refine_hist.d_res_high 1.040 _refine_hist.d_res_low 10.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.016 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.031 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist ? ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes ? ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol ? ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr ? ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt ? ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt ? ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps ? ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 1O55 _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff ? _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff 0.138 _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff ? _pdbx_refine.number_reflns_obs_no_cutoff ? _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _database_PDB_matrix.entry_id 1O55 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1O55 _struct.title 'MOLECULAR STRUCTURE OF TWO CRYSTAL FORMS OF CYCLIC TRIADENYLIC ACID AT 1 ANGSTROM RESOLUTION' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1O55 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'CYCLIC TRINUCLEOTIDE, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1O55 _struct_ref.pdbx_db_accession 1O55 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1O55 A 1 ? 3 ? 1O55 2 ? 4 ? 2 4 2 1 1O55 B 1 ? 3 ? 1O55 5 ? 7 ? 5 7 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? trimeric 3 2 author_defined_assembly ? trimeric 3 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2,3 A,D 2 1,4,5 B,C,E # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5000000000 0.8660254038 0.0000000000 -11.3185000000 -0.8660254038 -0.5000000000 0.0000000000 19.6042170655 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5000000000 -0.8660254038 0.0000000000 11.3185000000 0.8660254038 -0.5000000000 0.0000000000 19.6042170655 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 2_555 -y,x-y,z -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 5 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _struct_biol.id _struct_biol.pdbx_parent_biol_id _struct_biol.details 1 ? ? 2 ? ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? D HOH . O ? ? ? 1_555 C CO . CO ? ? A HOH 121 B CO 8 1_555 ? ? ? ? ? ? ? 2.101 ? ? metalc2 metalc ? ? D HOH . O ? ? ? 1_555 C CO . CO ? ? A HOH 122 B CO 8 1_555 ? ? ? ? ? ? ? 2.070 ? ? metalc3 metalc ? ? C CO . CO ? ? ? 1_555 E HOH . O ? ? B CO 8 B HOH 118 1_555 ? ? ? ? ? ? ? 1.989 ? ? metalc4 metalc ? ? C CO . CO ? ? ? 1_555 E HOH . O ? ? B CO 8 B HOH 119 1_555 ? ? ? ? ? ? ? 2.133 ? ? metalc5 metalc ? ? C CO . CO ? ? ? 1_555 E HOH . O ? ? B CO 8 B HOH 120 1_555 ? ? ? ? ? ? ? 2.074 ? ? metalc6 metalc ? ? C CO . CO ? ? ? 1_555 E HOH . O ? ? B CO 8 B HOH 123 1_555 ? ? ? ? ? ? ? 2.068 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? D HOH . ? A HOH 121 ? 1_555 CO ? C CO . ? B CO 8 ? 1_555 O ? D HOH . ? A HOH 122 ? 1_555 88.7 ? 2 O ? D HOH . ? A HOH 121 ? 1_555 CO ? C CO . ? B CO 8 ? 1_555 O ? E HOH . ? B HOH 118 ? 1_555 87.2 ? 3 O ? D HOH . ? A HOH 122 ? 1_555 CO ? C CO . ? B CO 8 ? 1_555 O ? E HOH . ? B HOH 118 ? 1_555 94.8 ? 4 O ? D HOH . ? A HOH 121 ? 1_555 CO ? C CO . ? B CO 8 ? 1_555 O ? E HOH . ? B HOH 119 ? 1_555 90.9 ? 5 O ? D HOH . ? A HOH 122 ? 1_555 CO ? C CO . ? B CO 8 ? 1_555 O ? E HOH . ? B HOH 119 ? 1_555 89.3 ? 6 O ? E HOH . ? B HOH 118 ? 1_555 CO ? C CO . ? B CO 8 ? 1_555 O ? E HOH . ? B HOH 119 ? 1_555 175.4 ? 7 O ? D HOH . ? A HOH 121 ? 1_555 CO ? C CO . ? B CO 8 ? 1_555 O ? E HOH . ? B HOH 120 ? 1_555 94.8 ? 8 O ? D HOH . ? A HOH 122 ? 1_555 CO ? C CO . ? B CO 8 ? 1_555 O ? E HOH . ? B HOH 120 ? 1_555 175.3 ? 9 O ? E HOH . ? B HOH 118 ? 1_555 CO ? C CO . ? B CO 8 ? 1_555 O ? E HOH . ? B HOH 120 ? 1_555 88.6 ? 10 O ? E HOH . ? B HOH 119 ? 1_555 CO ? C CO . ? B CO 8 ? 1_555 O ? E HOH . ? B HOH 120 ? 1_555 87.5 ? 11 O ? D HOH . ? A HOH 121 ? 1_555 CO ? C CO . ? B CO 8 ? 1_555 O ? E HOH . ? B HOH 123 ? 1_555 173.2 ? 12 O ? D HOH . ? A HOH 122 ? 1_555 CO ? C CO . ? B CO 8 ? 1_555 O ? E HOH . ? B HOH 123 ? 1_555 84.8 ? 13 O ? E HOH . ? B HOH 118 ? 1_555 CO ? C CO . ? B CO 8 ? 1_555 O ? E HOH . ? B HOH 123 ? 1_555 91.6 ? 14 O ? E HOH . ? B HOH 119 ? 1_555 CO ? C CO . ? B CO 8 ? 1_555 O ? E HOH . ? B HOH 123 ? 1_555 90.7 ? 15 O ? E HOH . ? B HOH 120 ? 1_555 CO ? C CO . ? B CO 8 ? 1_555 O ? E HOH . ? B HOH 123 ? 1_555 91.8 ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id B _struct_site.pdbx_auth_comp_id CO _struct_site.pdbx_auth_seq_id 8 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE CO B 8' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH D . ? HOH A 121 . ? 1_555 ? 2 AC1 6 HOH D . ? HOH A 122 . ? 1_555 ? 3 AC1 6 HOH E . ? HOH B 118 . ? 1_555 ? 4 AC1 6 HOH E . ? HOH B 119 . ? 1_555 ? 5 AC1 6 HOH E . ? HOH B 120 . ? 1_555 ? 6 AC1 6 HOH E . ? HOH B 123 . ? 1_555 ? # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 P A DA 2 ? ? 1_555 "O3'" A DA 2 ? ? 3_565 1.61 2 1 P B DA 5 ? ? 1_555 "O3'" B DA 5 ? ? 3_555 1.62 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N7 A DA 2 ? ? C8 A DA 2 ? ? N9 A DA 2 ? ? 110.41 113.80 -3.39 0.50 N 2 1 C8 A DA 2 ? ? N9 A DA 2 ? ? C4 A DA 2 ? ? 109.25 105.80 3.45 0.40 N 3 1 N9 A DA 2 ? ? C4 A DA 2 ? ? C5 A DA 2 ? ? 103.31 105.80 -2.49 0.40 N # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 103 ? D HOH . 2 1 A HOH 117 ? D HOH . 3 1 B HOH 101 ? E HOH . 4 1 B HOH 105 ? E HOH . 5 1 B HOH 106 ? E HOH . 6 1 B HOH 107 ? E HOH . 7 1 B HOH 111 ? E HOH . # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;SEQUENCE The crystallized entity is 5'-CD(*AP*AP*AP)-3', however, each of the two independent molecules sits on the crystallographic 3-fold axis. Remark 350 provides the way to create cyclic D(*Ap*Ap*Ap) molecule. ; # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A DA 3 ? A DA 2 2 1 Y 1 A DA 4 ? A DA 3 3 1 Y 1 B DA 6 ? B DA 2 4 1 Y 1 B DA 7 ? B DA 3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal CO CO CO N N 1 DA OP3 O N N 2 DA P P N N 3 DA OP1 O N N 4 DA OP2 O N N 5 DA "O5'" O N N 6 DA "C5'" C N N 7 DA "C4'" C N R 8 DA "O4'" O N N 9 DA "C3'" C N S 10 DA "O3'" O N N 11 DA "C2'" C N N 12 DA "C1'" C N R 13 DA N9 N Y N 14 DA C8 C Y N 15 DA N7 N Y N 16 DA C5 C Y N 17 DA C6 C Y N 18 DA N6 N N N 19 DA N1 N Y N 20 DA C2 C Y N 21 DA N3 N Y N 22 DA C4 C Y N 23 DA HOP3 H N N 24 DA HOP2 H N N 25 DA "H5'" H N N 26 DA "H5''" H N N 27 DA "H4'" H N N 28 DA "H3'" H N N 29 DA "HO3'" H N N 30 DA "H2'" H N N 31 DA "H2''" H N N 32 DA "H1'" H N N 33 DA H8 H N N 34 DA H61 H N N 35 DA H62 H N N 36 DA H2 H N N 37 HOH O O N N 38 HOH H1 H N N 39 HOH H2 H N N 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 HOH O H1 sing N N 39 HOH O H2 sing N N 40 # _atom_sites.entry_id 1O55 _atom_sites.fract_transf_matrix[1][1] 0.044175 _atom_sites.fract_transf_matrix[1][2] 0.025505 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.051009 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022431 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CO N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 P P . DA A 1 1 ? -2.673 15.931 2.686 1.00 8.71 ? 2 DA A P 1 ATOM 2 O OP1 . DA A 1 1 ? -3.818 16.500 3.449 1.00 10.67 ? 2 DA A OP1 1 ATOM 3 O OP2 . DA A 1 1 ? -2.651 16.207 1.202 1.00 10.10 ? 2 DA A OP2 1 ATOM 4 O "O5'" . DA A 1 1 ? -2.681 14.391 2.826 1.00 7.27 ? 2 DA A "O5'" 1 ATOM 5 C "C5'" . DA A 1 1 ? -2.535 13.860 4.152 1.00 8.93 ? 2 DA A "C5'" 1 ATOM 6 C "C4'" . DA A 1 1 ? -2.988 12.420 4.133 1.00 9.96 ? 2 DA A "C4'" 1 ATOM 7 O "O4'" . DA A 1 1 ? -4.433 12.456 4.078 1.00 10.18 ? 2 DA A "O4'" 1 ATOM 8 C "C3'" . DA A 1 1 ? -2.480 11.585 2.936 1.00 7.06 ? 2 DA A "C3'" 1 ATOM 9 O "O3'" . DA A 1 1 ? -2.259 10.226 3.409 1.00 9.04 ? 2 DA A "O3'" 1 ATOM 10 C "C2'" . DA A 1 1 ? -3.700 11.581 2.032 1.00 7.56 ? 2 DA A "C2'" 1 ATOM 11 C "C1'" . DA A 1 1 ? -4.836 11.568 3.013 1.00 9.44 ? 2 DA A "C1'" 1 ATOM 12 N N9 . DA A 1 1 ? -6.055 12.116 2.463 1.00 12.00 ? 2 DA A N9 1 ATOM 13 C C8 . DA A 1 1 ? -6.444 13.437 2.464 1.00 10.73 ? 2 DA A C8 1 ATOM 14 N N7 . DA A 1 1 ? -7.630 13.567 1.906 1.00 12.95 ? 2 DA A N7 1 ATOM 15 C C5 . DA A 1 1 ? -8.048 12.257 1.610 1.00 20.27 ? 2 DA A C5 1 ATOM 16 C C6 . DA A 1 1 ? -9.237 11.718 1.040 1.00 9.40 ? 2 DA A C6 1 ATOM 17 N N6 . DA A 1 1 ? -10.256 12.531 0.731 1.00 23.48 ? 2 DA A N6 1 ATOM 18 N N1 . DA A 1 1 ? -9.313 10.383 0.871 1.00 12.79 ? 2 DA A N1 1 ATOM 19 C C2 . DA A 1 1 ? -8.264 9.611 1.247 1.00 11.95 ? 2 DA A C2 1 ATOM 20 N N3 . DA A 1 1 ? -7.106 10.006 1.789 1.00 9.28 ? 2 DA A N3 1 ATOM 21 C C4 . DA A 1 1 ? -7.069 11.338 1.902 1.00 9.20 ? 2 DA A C4 1 ATOM 22 P P . DA B 1 1 ? -1.786 3.601 5.863 1.00 7.32 ? 5 DA B P 1 ATOM 23 O OP1 . DA B 1 1 ? -2.580 4.507 6.733 1.00 8.81 ? 5 DA B OP1 1 ATOM 24 O OP2 . DA B 1 1 ? -1.802 3.860 4.388 1.00 9.02 ? 5 DA B OP2 1 ATOM 25 O "O5'" . DA B 1 1 ? -2.198 2.076 6.022 1.00 7.33 ? 5 DA B "O5'" 1 ATOM 26 C "C5'" . DA B 1 1 ? -2.270 1.424 7.335 1.00 6.64 ? 5 DA B "C5'" 1 ATOM 27 C "C4'" . DA B 1 1 ? -3.116 0.182 7.225 1.00 7.03 ? 5 DA B "C4'" 1 ATOM 28 O "O4'" . DA B 1 1 ? -4.497 0.579 7.092 1.00 7.00 ? 5 DA B "O4'" 1 ATOM 29 C "C3'" . DA B 1 1 ? -2.812 -0.717 6.053 1.00 6.39 ? 5 DA B "C3'" 1 ATOM 30 O "O3'" . DA B 1 1 ? -2.965 -2.084 6.561 1.00 7.31 ? 5 DA B "O3'" 1 ATOM 31 C "C2'" . DA B 1 1 ? -3.888 -0.436 5.041 1.00 8.37 ? 5 DA B "C2'" 1 ATOM 32 C "C1'" . DA B 1 1 ? -5.034 0.030 5.895 1.00 7.66 ? 5 DA B "C1'" 1 ATOM 33 N N9 . DA B 1 1 ? -5.892 1.018 5.249 1.00 7.20 ? 5 DA B N9 1 ATOM 34 C C8 . DA B 1 1 ? -5.465 2.153 4.606 1.00 8.40 ? 5 DA B C8 1 ATOM 35 N N7 . DA B 1 1 ? -6.460 2.933 4.270 1.00 8.44 ? 5 DA B N7 1 ATOM 36 C C5 . DA B 1 1 ? -7.613 2.282 4.677 1.00 7.36 ? 5 DA B C5 1 ATOM 37 C C6 . DA B 1 1 ? -8.957 2.569 4.553 1.00 6.27 ? 5 DA B C6 1 ATOM 38 N N6 . DA B 1 1 ? -9.416 3.715 4.006 1.00 7.57 ? 5 DA B N6 1 ATOM 39 N N1 . DA B 1 1 ? -9.843 1.678 5.019 1.00 6.39 ? 5 DA B N1 1 ATOM 40 C C2 . DA B 1 1 ? -9.350 0.527 5.551 1.00 8.05 ? 5 DA B C2 1 ATOM 41 N N3 . DA B 1 1 ? -8.116 0.099 5.722 1.00 5.91 ? 5 DA B N3 1 ATOM 42 C C4 . DA B 1 1 ? -7.262 1.065 5.277 1.00 7.58 ? 5 DA B C4 1 HETATM 43 CO CO . CO C 2 . ? -5.050 6.966 4.083 1.00 15.61 ? 8 CO B CO 1 HETATM 44 O O . HOH D 3 . ? 0.000 13.069 0.654 0.33 13.17 ? 103 HOH A O 1 HETATM 45 O O . HOH D 3 . ? -1.831 14.584 -0.716 1.00 13.18 ? 104 HOH A O 1 HETATM 46 O O . HOH D 3 . ? -4.212 8.817 7.443 1.00 28.37 ? 108 HOH A O 1 HETATM 47 O O . HOH D 3 . ? -10.284 15.425 1.025 1.00 47.55 ? 109 HOH A O 1 HETATM 48 O O . HOH D 3 . ? -6.575 17.108 2.483 1.00 27.85 ? 112 HOH A O 1 HETATM 49 O O . HOH D 3 . ? -12.807 12.290 0.507 0.50 15.55 ? 113 HOH A O 1 HETATM 50 O O . HOH D 3 . ? -2.772 18.545 0.209 0.50 14.79 ? 114 HOH A O 1 HETATM 51 O O . HOH D 3 . ? -1.260 10.887 7.430 0.25 13.33 ? 117 HOH A O 1 HETATM 52 O O . HOH D 3 . ? -4.166 8.681 4.914 1.00 12.04 ? 121 HOH A O 1 HETATM 53 O O . HOH D 3 . ? -5.234 7.988 2.292 1.00 9.54 ? 122 HOH A O 1 HETATM 54 O O . HOH E 3 . ? -11.319 6.535 4.942 0.33 7.66 ? 101 HOH B O 1 HETATM 55 O O . HOH E 3 . ? -8.936 6.711 3.282 1.00 9.43 ? 102 HOH B O 1 HETATM 56 O O . HOH E 3 . ? -8.692 -1.985 7.430 0.25 6.90 ? 105 HOH B O 1 HETATM 57 O O . HOH E 3 . ? 0.000 0.000 3.726 0.33 13.05 ? 106 HOH B O 1 HETATM 58 O O . HOH E 3 . ? -2.865 4.962 0.000 0.50 19.28 ? 107 HOH B O 1 HETATM 59 O O . HOH E 3 . ? -6.735 -2.957 5.625 0.50 24.86 ? 110 HOH B O 1 HETATM 60 O O . HOH E 3 . ? -5.438 3.650 7.430 0.50 21.37 ? 111 HOH B O 1 HETATM 61 O O . HOH E 3 . ? -1.936 1.716 2.828 1.00 30.81 ? 115 HOH B O 1 HETATM 62 O O . HOH E 3 . ? -3.878 3.518 2.619 1.00 44.66 ? 116 HOH B O 1 HETATM 63 O O . HOH E 3 . ? -6.777 7.616 4.825 1.00 9.95 ? 118 HOH B O 1 HETATM 64 O O . HOH E 3 . ? -3.145 6.249 3.447 1.00 9.64 ? 119 HOH B O 1 HETATM 65 O O . HOH E 3 . ? -4.815 5.806 5.786 1.00 10.38 ? 120 HOH B O 1 HETATM 66 O O . HOH E 3 . ? -5.993 5.422 3.082 1.00 8.82 ? 123 HOH B O 1 # loop_ _atom_site_anisotrop.id _atom_site_anisotrop.type_symbol _atom_site_anisotrop.pdbx_label_atom_id _atom_site_anisotrop.pdbx_label_alt_id _atom_site_anisotrop.pdbx_label_comp_id _atom_site_anisotrop.pdbx_label_asym_id _atom_site_anisotrop.pdbx_label_seq_id _atom_site_anisotrop.pdbx_PDB_ins_code _atom_site_anisotrop.U[1][1] _atom_site_anisotrop.U[2][2] _atom_site_anisotrop.U[3][3] _atom_site_anisotrop.U[1][2] _atom_site_anisotrop.U[1][3] _atom_site_anisotrop.U[2][3] _atom_site_anisotrop.pdbx_auth_seq_id _atom_site_anisotrop.pdbx_auth_comp_id _atom_site_anisotrop.pdbx_auth_asym_id _atom_site_anisotrop.pdbx_auth_atom_id 1 P P . DA A 1 ? 0.1230 0.0972 0.1106 0.0175 0.0089 -0.0114 2 DA A P 2 O OP1 . DA A 1 ? 0.1106 0.1424 0.1525 0.0165 0.0513 -0.0460 2 DA A OP1 3 O OP2 . DA A 1 ? 0.1720 0.0999 0.1119 0.0277 0.0019 0.0054 2 DA A OP2 4 O "O5'" . DA A 1 ? 0.1100 0.0854 0.0807 -0.0121 0.0078 -0.0071 2 DA A "O5'" 5 C "C5'" . DA A 1 ? 0.1127 0.1159 0.1106 -0.0141 -0.0004 -0.0069 2 DA A "C5'" 6 C "C4'" . DA A 1 ? 0.1216 0.1566 0.1003 -0.0563 -0.0052 0.0034 2 DA A "C4'" 7 O "O4'" . DA A 1 ? 0.1370 0.1787 0.0711 -0.0394 0.0102 0.0188 2 DA A "O4'" 8 C "C3'" . DA A 1 ? 0.0995 0.1084 0.0603 0.0049 0.0113 0.0076 2 DA A "C3'" 9 O "O3'" . DA A 1 ? 0.1151 0.1195 0.1088 -0.0120 0.0042 0.0318 2 DA A "O3'" 10 C "C2'" . DA A 1 ? 0.1099 0.0871 0.0904 0.0010 0.0342 -0.0020 2 DA A "C2'" 11 C "C1'" . DA A 1 ? 0.0703 0.1509 0.1373 -0.0077 -0.0352 0.0230 2 DA A "C1'" 12 N N9 . DA A 1 ? 0.1840 0.1686 0.1032 0.0047 0.0434 0.0257 2 DA A N9 13 C C8 . DA A 1 ? 0.1540 0.1531 0.1007 0.0137 0.0024 0.0168 2 DA A C8 14 N N7 . DA A 1 ? 0.1612 0.2507 0.0801 0.0065 0.0408 0.0257 2 DA A N7 15 C C5 . DA A 1 ? 0.1650 0.5416 0.0634 0.0236 0.0404 0.1208 2 DA A C5 16 C C6 . DA A 1 ? 0.0748 0.1989 0.0836 0.0029 0.0166 0.0211 2 DA A C6 17 N N6 . DA A 1 ? 0.2473 0.5099 0.1349 0.2809 0.0740 0.1409 2 DA A N6 18 N N1 . DA A 1 ? 0.1056 0.2930 0.0873 -0.0187 -0.0215 0.0025 2 DA A N1 19 C C2 . DA A 1 ? 0.1613 0.1378 0.1549 -0.0197 -0.0778 0.0324 2 DA A C2 20 N N3 . DA A 1 ? 0.1410 0.1229 0.0888 -0.0035 0.0045 0.0276 2 DA A N3 21 C C4 . DA A 1 ? 0.1017 0.1349 0.1131 0.0619 0.0388 0.0651 2 DA A C4 22 P P . DA B 1 ? 0.0829 0.0767 0.1183 0.0023 0.0028 -0.0033 5 DA B P 23 O OP1 . DA B 1 ? 0.0855 0.0988 0.1503 0.0022 -0.0091 0.0016 5 DA B OP1 24 O OP2 . DA B 1 ? 0.1519 0.1013 0.0895 0.0092 0.0041 0.0239 5 DA B OP2 25 O "O5'" . DA B 1 ? 0.0836 0.0830 0.1121 -0.0121 0.0044 -0.0046 5 DA B "O5'" 26 C "C5'" . DA B 1 ? 0.0899 0.1026 0.0596 -0.0111 -0.0005 0.0126 5 DA B "C5'" 27 C "C4'" . DA B 1 ? 0.0676 0.1279 0.0718 0.0094 -0.0052 0.0141 5 DA B "C4'" 28 O "O4'" . DA B 1 ? 0.0846 0.0962 0.0851 0.0111 0.0047 0.0028 5 DA B "O4'" 29 C "C3'" . DA B 1 ? 0.0978 0.0540 0.0909 -0.0126 0.0165 0.0052 5 DA B "C3'" 30 O "O3'" . DA B 1 ? 0.0791 0.0960 0.1028 -0.0092 0.0035 0.0071 5 DA B "O3'" 31 C "C2'" . DA B 1 ? 0.1182 0.0993 0.1006 -0.0008 -0.0329 0.0169 5 DA B "C2'" 32 C "C1'" . DA B 1 ? 0.0757 0.0853 0.1300 0.0250 0.0237 0.0295 5 DA B "C1'" 33 N N9 . DA B 1 ? 0.0888 0.0681 0.1165 -0.0290 -0.0265 0.0226 5 DA B N9 34 C C8 . DA B 1 ? 0.0876 0.0994 0.1322 0.0026 -0.0242 0.0457 5 DA B C8 35 N N7 . DA B 1 ? 0.1125 0.1002 0.1079 -0.0234 -0.0164 0.0302 5 DA B N7 36 C C5 . DA B 1 ? 0.1416 0.0680 0.0699 -0.0271 -0.0132 0.0164 5 DA B C5 37 C C6 . DA B 1 ? 0.0974 0.0759 0.0649 0.0014 -0.0262 -0.0078 5 DA B C6 38 N N6 . DA B 1 ? 0.0898 0.1039 0.0939 0.0113 -0.0042 0.0002 5 DA B N6 39 N N1 . DA B 1 ? 0.0704 0.0719 0.1004 0.0080 0.0022 0.0126 5 DA B N1 40 C C2 . DA B 1 ? 0.1278 0.0961 0.0821 -0.0386 0.0399 -0.0273 5 DA B C2 41 N N3 . DA B 1 ? 0.0590 0.0645 0.1012 -0.0149 -0.0051 -0.0055 5 DA B N3 42 C C4 . DA B 1 ? 0.1260 0.0703 0.0917 0.0093 -0.0403 -0.0172 5 DA B C4 43 CO CO . CO C . ? 0.1799 0.1642 0.2491 0.0139 0.0125 0.0322 8 CO B CO 44 O O . HOH D . ? 0.1945 0.1945 0.1114 0.0000 0.0000 0.0000 103 HOH A O 45 O O . HOH D . ? 0.2190 0.1748 0.1070 0.0165 -0.0131 0.0165 104 HOH A O 46 O O . HOH D . ? 0.6333 0.3755 0.0693 -0.1318 0.0132 -0.0140 108 HOH A O 47 O O . HOH D . ? 0.7563 0.7523 0.2982 -0.4078 0.2498 -0.2031 109 HOH A O 48 O O . HOH D . ? 0.4073 0.2512 0.3998 0.0731 -0.2706 -0.0328 112 HOH A O 49 O O . HOH D . ? 0.4201 0.1106 0.0601 -0.0682 0.0074 -0.0214 113 HOH A O 50 O O . HOH D . ? 0.2736 0.1272 0.1613 0.0417 0.0837 0.0058 114 HOH A O 51 O O . HOH D . ? 0.2233 0.1673 0.1161 -0.0484 -0.0018 0.0011 117 HOH A O 52 O O . HOH D . ? 0.1417 0.1258 0.1901 -0.0391 0.0361 -0.0468 121 HOH A O 53 O O . HOH D . ? 0.1328 0.1071 0.1226 -0.0092 0.0033 0.0152 122 HOH A O 54 O O . HOH E . ? 0.1190 0.1190 0.0530 0.0000 0.0000 0.0000 101 HOH B O 55 O O . HOH E . ? 0.1343 0.0964 0.1275 -0.0257 0.0270 -0.0325 102 HOH B O 56 O O . HOH E . ? 0.0879 0.0676 0.1067 -0.0175 -0.0443 0.0256 105 HOH B O 57 O O . HOH E . ? 0.1803 0.1803 0.1351 0.0000 0.0000 0.0000 106 HOH B O 58 O O . HOH E . ? 0.2922 0.2203 0.2199 -0.0622 -0.0706 0.0408 107 HOH B O 59 O O . HOH E . ? 0.4224 0.1292 0.3928 -0.1557 -0.3514 0.1664 110 HOH B O 60 O O . HOH E . ? 0.2174 0.2590 0.3354 0.0360 -0.0203 0.0118 111 HOH B O 61 O O . HOH E . ? 0.3697 0.3484 0.4527 0.0224 0.0882 0.2023 115 HOH B O 62 O O . HOH E . ? 0.9530 0.2228 0.5212 -0.0022 -0.5054 -0.0344 116 HOH B O 63 O O . HOH E . ? 0.0838 0.0986 0.1956 0.0072 0.0162 0.0263 118 HOH B O 64 O O . HOH E . ? 0.0925 0.1121 0.1616 -0.0004 0.0318 0.0029 119 HOH B O 65 O O . HOH E . ? 0.1182 0.1163 0.1598 -0.0132 -0.0071 0.0313 120 HOH B O 66 O O . HOH E . ? 0.1143 0.1021 0.1189 -0.0258 -0.0033 0.0106 123 HOH B O #