HEADER DNA 03-OCT-03 1R41 TITLE CRYSTAL STRUCTURES OF D(GM5CGM5CGCGC) AND D(GCGCGM5CGM5C): EFFECTS OF TITLE 2 METHYLATION ON ALTERNATING DNA OCTAMERS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*GP*CP*GP*CP*GP*(5CM)P*GP*(5CM))-3'; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: DNA SYNTHESIZER KEYWDS DNA EXPDTA X-RAY DIFFRACTION AUTHOR K.SHI,B.PAN,D.TIPPIN,M.SUNDARALINGAM REVDAT 3 14-FEB-24 1R41 1 LINK REVDAT 2 24-FEB-09 1R41 1 VERSN REVDAT 1 23-DEC-03 1R41 0 JRNL AUTH K.SHI,B.PAN,D.TIPPIN,M.SUNDARALINGAM JRNL TITL STRUCTURES OF D(GM5)CGM5CGCGC) AND D(GCGCGM5CGM5C): EFFECTS JRNL TITL 2 OF METHYLATION ON ALTERNATING DNA OCTAMERS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 60 61 2004 JRNL REFN ISSN 0907-4449 JRNL PMID 14684893 JRNL DOI 10.1107/S0907444903021899 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 163 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 19 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1R41 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-OCT-03. REMARK 100 THE DEPOSITION ID IS D_1000020409. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IIC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 2192 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 19.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR PLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CACODYLATE, MAGNESIUM CHLORIDE, REMARK 280 SPERMINE TETRACHLORIDE, PH 6.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 12.38500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 21.56000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 21.56000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 18.57750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 21.56000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 21.56000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 6.19250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 21.56000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 21.56000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 18.57750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 21.56000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 21.56000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 6.19250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 12.38500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG A 1 C5' DG A 1 C4' 0.043 REMARK 500 DG A 1 N9 DG A 1 C4 -0.056 REMARK 500 DG A 1 O3' DC A 2 P 0.076 REMARK 500 DC A 2 P DC A 2 O5' -0.081 REMARK 500 DC A 2 N1 DC A 2 C2 -0.088 REMARK 500 DC A 2 C5 DC A 2 C6 0.072 REMARK 500 DC A 2 O3' DG A 3 P 0.086 REMARK 500 DG A 3 C6 DG A 3 N1 -0.081 REMARK 500 DG A 3 N7 DG A 3 C8 -0.062 REMARK 500 DG A 3 N9 DG A 3 C4 -0.078 REMARK 500 DG A 3 C2 DG A 3 N2 -0.121 REMARK 500 DG A 5 P DG A 5 O5' -0.079 REMARK 500 DG A 5 C6 DG A 5 N1 0.056 REMARK 500 DG A 5 C2 DG A 5 N2 0.066 REMARK 500 5CM A 6 O3' DG A 7 P 0.073 REMARK 500 DG A 7 P DG A 7 OP1 0.153 REMARK 500 DG A 7 O4' DG A 7 C1' -0.082 REMARK 500 DG A 7 O3' DG A 7 C3' -0.077 REMARK 500 DG A 7 N3 DG A 7 C4 -0.132 REMARK 500 DG A 7 C5 DG A 7 C6 0.061 REMARK 500 DG A 7 N9 DG A 7 C4 0.055 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG A 1 O4' - C4' - C3' ANGL. DEV. = -3.5 DEGREES REMARK 500 DG A 1 C5 - C6 - O6 ANGL. DEV. = 5.2 DEGREES REMARK 500 DG A 3 O3' - P - OP1 ANGL. DEV. = -13.7 DEGREES REMARK 500 DG A 3 O5' - P - OP1 ANGL. DEV. = 12.7 DEGREES REMARK 500 DG A 3 O4' - C4' - C3' ANGL. DEV. = -2.7 DEGREES REMARK 500 DG A 3 C5' - C4' - C3' ANGL. DEV. = 8.5 DEGREES REMARK 500 DC A 4 O5' - P - OP2 ANGL. DEV. = 10.2 DEGREES REMARK 500 DG A 5 O3' - P - OP2 ANGL. DEV. = 8.9 DEGREES REMARK 500 DG A 5 O5' - C5' - C4' ANGL. DEV. = -5.0 DEGREES REMARK 500 5CM A 6 O3' - P - OP2 ANGL. DEV. = 10.1 DEGREES REMARK 500 DG A 7 O3' - P - OP2 ANGL. DEV. = 7.6 DEGREES REMARK 500 DG A 7 O5' - P - OP2 ANGL. DEV. = -8.1 DEGREES REMARK 500 DG A 7 O4' - C4' - C3' ANGL. DEV. = -2.8 DEGREES REMARK 500 5CM A 8 O3' - P - OP2 ANGL. DEV. = 20.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DG A 1 0.06 SIDE CHAIN REMARK 500 DC A 2 0.07 SIDE CHAIN REMARK 500 DG A 3 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1R3Z RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF D(GM5CGM5CGCGC) AND D(GCGCGM5CGM5C): EFFECTS REMARK 900 OF METHYLATION ON ALTERNATING DNA OCTAMERS DBREF 1R41 A 1 8 PDB 1R41 1R41 1 8 SEQRES 1 A 8 DG DC DG DC DG 5CM DG 5CM MODRES 1R41 5CM A 6 DC MODRES 1R41 5CM A 8 DC HET 5CM A 6 20 HET 5CM A 8 20 HETNAM 5CM 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE FORMUL 1 5CM 2(C10 H16 N3 O7 P) FORMUL 2 HOH *19(H2 O) LINK O3' DG A 5 P 5CM A 6 1555 1555 1.58 LINK O3' 5CM A 6 P DG A 7 1555 1555 1.68 LINK O3' DG A 7 P 5CM A 8 1555 1555 1.57 CRYST1 43.120 43.120 24.770 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023191 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023191 0.000000 0.00000 SCALE3 0.000000 0.000000 0.040371 0.00000 ATOM 1 O5' DG A 1 29.002 19.538 -5.666 1.00 29.10 O ATOM 2 C5' DG A 1 28.768 18.211 -5.166 1.00 27.31 C ATOM 3 C4' DG A 1 29.997 17.521 -4.508 1.00 28.25 C ATOM 4 O4' DG A 1 31.191 17.607 -5.311 1.00 26.07 O ATOM 5 C3' DG A 1 30.426 18.233 -3.285 1.00 28.35 C ATOM 6 O3' DG A 1 29.786 17.826 -2.113 1.00 32.50 O ATOM 7 C2' DG A 1 31.902 17.823 -3.143 1.00 27.29 C ATOM 8 C1' DG A 1 32.322 17.837 -4.606 1.00 27.21 C ATOM 9 N9 DG A 1 32.759 19.153 -5.011 1.00 26.18 N ATOM 10 C8 DG A 1 32.049 20.021 -5.825 1.00 26.73 C ATOM 11 N7 DG A 1 32.748 21.024 -6.241 1.00 26.17 N ATOM 12 C5 DG A 1 33.941 20.879 -5.506 1.00 24.99 C ATOM 13 C6 DG A 1 35.174 21.693 -5.462 1.00 25.56 C ATOM 14 O6 DG A 1 35.515 22.763 -5.986 1.00 26.72 O ATOM 15 N1 DG A 1 36.121 21.068 -4.655 1.00 28.37 N ATOM 16 C2 DG A 1 35.945 19.892 -4.000 1.00 27.77 C ATOM 17 N2 DG A 1 37.002 19.551 -3.349 1.00 30.49 N ATOM 18 N3 DG A 1 34.860 19.185 -3.986 1.00 26.54 N ATOM 19 C4 DG A 1 33.920 19.728 -4.762 1.00 24.63 C ATOM 20 P DC A 2 29.403 18.896 -0.872 1.00 35.73 P ATOM 21 OP1 DC A 2 28.409 18.106 -0.088 1.00 36.79 O ATOM 22 OP2 DC A 2 29.014 20.215 -1.474 1.00 32.95 O ATOM 23 O5' DC A 2 30.567 19.213 0.040 1.00 31.57 O ATOM 24 C5' DC A 2 31.295 18.286 0.600 1.00 33.41 C ATOM 25 C4' DC A 2 32.703 18.731 0.877 1.00 31.91 C ATOM 26 O4' DC A 2 33.383 18.904 -0.410 1.00 31.64 O ATOM 27 C3' DC A 2 32.915 20.048 1.601 1.00 33.72 C ATOM 28 O3' DC A 2 32.971 19.977 3.082 1.00 38.80 O ATOM 29 C2' DC A 2 34.369 20.318 1.229 1.00 32.83 C ATOM 30 C1' DC A 2 34.474 19.854 -0.246 1.00 31.03 C ATOM 31 N1 DC A 2 34.123 21.104 -1.010 1.00 28.11 N ATOM 32 C2 DC A 2 35.069 21.955 -1.319 1.00 28.55 C ATOM 33 O2 DC A 2 36.175 21.804 -0.786 1.00 33.12 O ATOM 34 N3 DC A 2 34.892 22.942 -2.223 1.00 26.56 N ATOM 35 C4 DC A 2 33.682 23.155 -2.758 1.00 29.26 C ATOM 36 N4 DC A 2 33.478 24.259 -3.560 1.00 27.25 N ATOM 37 C5 DC A 2 32.576 22.280 -2.491 1.00 28.28 C ATOM 38 C6 DC A 2 32.837 21.279 -1.531 1.00 29.49 C ATOM 39 P DG A 3 32.387 21.256 4.025 1.00 39.73 P ATOM 40 OP1 DG A 3 31.863 20.300 5.069 1.00 40.98 O ATOM 41 OP2 DG A 3 31.329 21.963 3.424 1.00 39.39 O ATOM 42 O5' DG A 3 33.699 22.085 4.201 1.00 38.30 O ATOM 43 C5' DG A 3 34.824 21.574 4.646 1.00 36.47 C ATOM 44 C4' DG A 3 35.946 22.571 4.572 1.00 36.52 C ATOM 45 O4' DG A 3 36.143 22.657 3.157 1.00 38.24 O ATOM 46 C3' DG A 3 35.814 24.047 4.959 1.00 38.17 C ATOM 47 O3' DG A 3 36.265 24.393 6.295 1.00 38.83 O ATOM 48 C2' DG A 3 36.823 24.729 4.065 1.00 35.73 C ATOM 49 C1' DG A 3 36.798 23.845 2.761 1.00 35.37 C ATOM 50 N9 DG A 3 35.832 24.553 1.888 1.00 30.85 N ATOM 51 C8 DG A 3 34.514 24.204 1.632 1.00 28.74 C ATOM 52 N7 DG A 3 34.054 24.827 0.660 1.00 27.54 N ATOM 53 C5 DG A 3 35.030 25.757 0.370 1.00 26.60 C ATOM 54 C6 DG A 3 35.030 26.894 -0.569 1.00 22.91 C ATOM 55 O6 DG A 3 34.194 27.174 -1.368 1.00 24.28 O ATOM 56 N1 DG A 3 36.111 27.616 -0.409 1.00 19.33 N ATOM 57 C2 DG A 3 37.134 27.406 0.502 1.00 21.66 C ATOM 58 N2 DG A 3 38.064 28.194 0.453 1.00 22.50 N ATOM 59 N3 DG A 3 37.193 26.434 1.359 1.00 23.78 N ATOM 60 C4 DG A 3 36.108 25.617 1.200 1.00 26.90 C ATOM 61 P DC A 4 35.451 25.592 7.038 1.00 41.04 P ATOM 62 OP1 DC A 4 36.091 25.406 8.384 1.00 40.06 O ATOM 63 OP2 DC A 4 33.987 25.422 6.884 1.00 38.33 O ATOM 64 O5' DC A 4 36.183 26.909 6.511 1.00 36.12 O ATOM 65 C5' DC A 4 37.514 27.073 6.685 1.00 31.66 C ATOM 66 C4' DC A 4 37.953 28.380 6.085 1.00 31.19 C ATOM 67 O4' DC A 4 37.898 28.351 4.627 1.00 31.22 O ATOM 68 C3' DC A 4 36.907 29.456 6.437 1.00 29.12 C ATOM 69 O3' DC A 4 37.393 30.146 7.677 1.00 31.60 O ATOM 70 C2' DC A 4 37.176 30.443 5.317 1.00 27.40 C ATOM 71 C1' DC A 4 37.447 29.556 4.131 1.00 27.48 C ATOM 72 N1 DC A 4 36.165 29.272 3.384 1.00 24.46 N ATOM 73 C2 DC A 4 35.835 30.140 2.401 1.00 20.59 C ATOM 74 O2 DC A 4 36.591 31.087 2.266 1.00 22.37 O ATOM 75 N3 DC A 4 34.686 29.981 1.629 1.00 21.11 N ATOM 76 C4 DC A 4 33.866 28.978 1.962 1.00 22.19 C ATOM 77 N4 DC A 4 32.664 28.814 1.287 1.00 22.32 N ATOM 78 C5 DC A 4 34.180 28.063 3.042 1.00 21.40 C ATOM 79 C6 DC A 4 35.367 28.249 3.691 1.00 22.69 C ATOM 80 P DG A 5 36.455 31.152 8.392 1.00 30.29 P ATOM 81 OP1 DG A 5 37.153 31.316 9.594 1.00 34.80 O ATOM 82 OP2 DG A 5 35.060 30.819 8.567 1.00 31.93 O ATOM 83 O5' DG A 5 36.699 32.348 7.497 1.00 28.60 O ATOM 84 C5' DG A 5 35.658 33.285 7.378 1.00 24.45 C ATOM 85 C4' DG A 5 36.113 34.208 6.300 1.00 25.02 C ATOM 86 O4' DG A 5 36.087 33.444 5.013 1.00 24.06 O ATOM 87 C3' DG A 5 35.215 35.376 6.023 1.00 26.34 C ATOM 88 O3' DG A 5 35.582 36.512 6.830 1.00 27.71 O ATOM 89 C2' DG A 5 35.434 35.712 4.530 1.00 22.49 C ATOM 90 C1' DG A 5 35.616 34.303 3.974 1.00 22.65 C ATOM 91 N9 DG A 5 34.318 33.708 3.523 1.00 19.71 N ATOM 92 C8 DG A 5 33.759 32.554 4.050 1.00 16.61 C ATOM 93 N7 DG A 5 32.752 32.140 3.398 1.00 17.77 N ATOM 94 C5 DG A 5 32.623 33.049 2.342 1.00 19.61 C ATOM 95 C6 DG A 5 31.616 33.155 1.279 1.00 19.87 C ATOM 96 O6 DG A 5 30.549 32.448 1.147 1.00 22.58 O ATOM 97 N1 DG A 5 31.838 34.318 0.447 1.00 20.02 N ATOM 98 C2 DG A 5 32.912 35.222 0.619 1.00 20.39 C ATOM 99 N2 DG A 5 32.995 36.234 -0.355 1.00 19.15 N ATOM 100 N3 DG A 5 33.791 35.143 1.598 1.00 20.69 N ATOM 101 C4 DG A 5 33.562 34.080 2.462 1.00 19.59 C HETATM 102 N1 5CM A 6 31.753 37.844 2.829 1.00 21.84 N HETATM 103 C2 5CM A 6 30.804 37.569 1.950 1.00 21.35 C HETATM 104 N3 5CM A 6 29.960 36.485 2.124 1.00 21.31 N HETATM 105 C4 5CM A 6 30.067 35.712 3.206 1.00 22.85 C HETATM 106 C5 5CM A 6 31.028 36.006 4.230 1.00 20.91 C HETATM 107 C5A 5CM A 6 31.090 35.138 5.486 1.00 22.08 C HETATM 108 C6 5CM A 6 31.828 37.117 4.005 1.00 23.29 C HETATM 109 O2 5CM A 6 30.703 38.292 0.982 1.00 25.49 O HETATM 110 N4 5CM A 6 29.244 34.629 3.385 1.00 22.21 N HETATM 111 C1' 5CM A 6 32.744 38.866 2.492 1.00 25.13 C HETATM 112 C2' 5CM A 6 32.103 40.185 3.099 1.00 24.69 C HETATM 113 C3' 5CM A 6 32.818 40.170 4.500 1.00 28.16 C HETATM 114 C4' 5CM A 6 34.183 39.559 4.214 1.00 28.28 C HETATM 115 O4' 5CM A 6 33.913 38.554 3.231 1.00 26.64 O HETATM 116 O3' 5CM A 6 32.806 41.602 4.896 1.00 31.23 O HETATM 117 C5' 5CM A 6 34.822 38.982 5.427 1.00 29.01 C HETATM 118 O5' 5CM A 6 33.957 38.412 6.180 1.00 26.75 O HETATM 119 P 5CM A 6 34.409 37.429 7.369 1.00 29.72 P HETATM 120 OP1 5CM A 6 35.219 38.405 8.260 1.00 32.33 O HETATM 121 OP2 5CM A 6 33.286 36.884 7.857 1.00 27.15 O ATOM 122 P DG A 7 31.482 42.084 5.811 1.00 32.23 P ATOM 123 OP1 DG A 7 32.028 43.521 6.376 1.00 35.30 O ATOM 124 OP2 DG A 7 30.781 41.058 6.621 1.00 33.50 O ATOM 125 O5' DG A 7 30.354 42.261 4.666 1.00 29.77 O ATOM 126 C5' DG A 7 30.534 43.095 3.513 1.00 29.08 C ATOM 127 C4' DG A 7 29.273 43.007 2.646 1.00 31.42 C ATOM 128 O4' DG A 7 29.162 41.623 2.209 1.00 28.96 O ATOM 129 C3' DG A 7 27.974 43.199 3.384 1.00 31.10 C ATOM 130 O3' DG A 7 27.420 44.413 3.238 1.00 35.30 O ATOM 131 C2' DG A 7 26.999 42.296 2.619 1.00 28.64 C ATOM 132 C1' DG A 7 27.887 41.299 1.974 1.00 27.65 C ATOM 133 N9 DG A 7 27.694 40.031 2.690 1.00 25.27 N ATOM 134 C8 DG A 7 28.469 39.472 3.657 1.00 23.03 C ATOM 135 N7 DG A 7 28.048 38.297 4.039 1.00 23.39 N ATOM 136 C5 DG A 7 26.857 38.062 3.383 1.00 23.83 C ATOM 137 C6 DG A 7 25.870 36.960 3.417 1.00 22.61 C ATOM 138 O6 DG A 7 25.832 35.972 4.105 1.00 24.41 O ATOM 139 N1 DG A 7 24.935 37.102 2.396 1.00 22.54 N ATOM 140 C2 DG A 7 24.837 38.223 1.674 1.00 21.39 C ATOM 141 N2 DG A 7 23.758 38.268 0.859 1.00 22.46 N ATOM 142 N3 DG A 7 25.644 39.281 1.764 1.00 21.83 N ATOM 143 C4 DG A 7 26.583 39.145 2.528 1.00 24.75 C HETATM 144 N1 5CM A 8 22.684 40.903 3.635 1.00 30.97 N HETATM 145 C2 5CM A 8 22.085 39.701 3.684 1.00 28.98 C HETATM 146 N3 5CM A 8 22.641 38.754 4.450 1.00 28.92 N HETATM 147 C4 5CM A 8 23.666 39.053 5.231 1.00 25.80 C HETATM 148 C5 5CM A 8 24.245 40.339 5.231 1.00 27.01 C HETATM 149 C5A 5CM A 8 25.471 40.619 5.979 1.00 24.76 C HETATM 150 C6 5CM A 8 23.659 41.225 4.480 1.00 27.29 C HETATM 151 O2 5CM A 8 20.981 39.497 3.013 1.00 25.44 O HETATM 152 N4 5CM A 8 24.096 38.085 5.914 1.00 24.77 N HETATM 153 C1' 5CM A 8 22.165 41.881 2.523 1.00 35.35 C HETATM 154 C2' 5CM A 8 21.200 42.875 3.191 1.00 36.44 C HETATM 155 C3' 5CM A 8 21.870 44.270 3.082 1.00 41.62 C HETATM 156 C4' 5CM A 8 23.277 44.067 2.431 1.00 37.56 C HETATM 157 O4' 5CM A 8 23.221 42.684 2.038 1.00 39.63 O HETATM 158 O3' 5CM A 8 20.751 44.374 2.044 1.00 44.72 O HETATM 159 C5' 5CM A 8 24.343 43.791 3.416 1.00 38.57 C HETATM 160 O5' 5CM A 8 24.999 44.930 3.692 1.00 37.51 O HETATM 161 P 5CM A 8 26.406 44.894 4.340 1.00 38.61 P HETATM 162 OP1 5CM A 8 26.679 46.384 4.358 1.00 38.13 O HETATM 163 OP2 5CM A 8 25.482 44.155 5.148 1.00 37.35 O TER 164 5CM A 8 HETATM 165 O HOH A 101 36.084 36.854 1.226 1.00 22.69 O HETATM 166 O HOH A 102 28.577 37.337 6.645 1.00 26.51 O HETATM 167 O HOH A 103 31.533 24.907 -0.209 1.00 43.91 O HETATM 168 O HOH A 104 31.601 27.011 -1.859 1.00 37.62 O HETATM 169 O HOH A 105 31.084 30.140 4.269 1.00 35.41 O HETATM 170 O HOH A 106 29.582 30.168 2.034 1.00 39.76 O HETATM 171 O HOH A 107 30.775 38.529 7.500 1.00 44.57 O HETATM 172 O HOH A 108 29.385 35.099 8.927 1.00 57.44 O HETATM 173 O HOH A 109 28.579 31.993 5.327 1.00 53.46 O HETATM 174 O HOH A 110 30.844 26.880 2.027 1.00 43.21 O HETATM 175 O HOH A 111 26.980 34.892 6.084 1.00 38.08 O HETATM 176 O HOH A 112 26.118 38.047 7.984 1.00 46.94 O HETATM 177 O HOH A 113 34.337 24.830 -7.317 1.00 38.18 O HETATM 178 O HOH A 114 31.563 23.212 -7.594 1.00 42.28 O HETATM 179 O HOH A 115 37.154 38.734 2.506 1.00 35.09 O HETATM 180 O HOH A 116 36.034 41.335 2.112 1.00 52.09 O HETATM 181 O HOH A 117 24.568 41.198 -0.265 1.00 48.64 O HETATM 182 O HOH A 118 29.556 37.812 10.692 1.00 53.51 O HETATM 183 O HOH A 119 38.418 38.771 4.699 1.00 43.99 O CONECT 88 119 CONECT 102 103 108 111 CONECT 103 102 104 109 CONECT 104 103 105 CONECT 105 104 106 110 CONECT 106 105 107 108 CONECT 107 106 CONECT 108 102 106 CONECT 109 103 CONECT 110 105 CONECT 111 102 112 115 CONECT 112 111 113 CONECT 113 112 114 116 CONECT 114 113 115 117 CONECT 115 111 114 CONECT 116 113 122 CONECT 117 114 118 CONECT 118 117 119 CONECT 119 88 118 120 121 CONECT 120 119 CONECT 121 119 CONECT 122 116 CONECT 130 161 CONECT 144 145 150 153 CONECT 145 144 146 151 CONECT 146 145 147 CONECT 147 146 148 152 CONECT 148 147 149 150 CONECT 149 148 CONECT 150 144 148 CONECT 151 145 CONECT 152 147 CONECT 153 144 154 157 CONECT 154 153 155 CONECT 155 154 156 158 CONECT 156 155 157 159 CONECT 157 153 156 CONECT 158 155 CONECT 159 156 160 CONECT 160 159 161 CONECT 161 130 160 162 163 CONECT 162 161 CONECT 163 161 MASTER 313 0 2 0 0 0 0 6 182 1 43 1 END