HEADER DNA 18-AUG-88 1VTT TITLE GT WOBBLE BASE-PAIRING IN Z-DNA AT 1.0 ANGSTROM ATOMIC RESOLUTION: THE TITLE 2 CRYSTAL STRUCTURE OF D(CGCGTG) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*GP*CP*GP*TP*G)-3'); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS Z-DNA, DOUBLE HELIX, MISMATCHED, DNA EXPDTA X-RAY DIFFRACTION AUTHOR P.S.HO,C.A.FREDERICK,G.J.QUIGLEY,G.A.VAN DER MAREL,J.H.VAN BOOM,A.H.- AUTHOR 2 J.WANG,A.RICH REVDAT 2 27-DEC-23 1VTT 1 REMARK REVDAT 1 13-JUL-11 1VTT 0 JRNL AUTH P.S.HO,C.A.FREDERICK,G.J.QUIGLEY,G.A.VAN DER MAREL, JRNL AUTH 2 J.H.VAN BOOM,A.H.-J.WANG,A.RICH JRNL TITL GT WOBBLE BASE-PAIRING IN Z-DNA AT 1.0 ANGSTROM ATOMIC JRNL TITL 2 RESOLUTION: THE CRYSTAL STRUCTURE OF D(CGCGTG) JRNL REF EMBO J. V. 4 3617 1985 JRNL REFN ISSN 0261-4189 JRNL PMID 4092690 REMARK 2 REMARK 2 RESOLUTION. 1.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 242 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1VTT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-FEB-11. REMARK 100 THE DEPOSITION ID IS D_1000003050. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 288.00 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : DIFFRACTOMETER REMARK 200 DETECTOR MANUFACTURER : NICOLET P3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10964 REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 79.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 28.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.00, VAPOR DIFFUSION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 8.72500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.78000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 15.81500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 22.78000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 8.72500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 15.81500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 2340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC A 1 C5' DC A 1 C4' 0.095 REMARK 500 DC A 1 C4' DC A 1 C3' 0.091 REMARK 500 DC A 1 C2' DC A 1 C1' 0.102 REMARK 500 DC A 1 N1 DC A 1 C2 0.081 REMARK 500 DC A 1 N1 DC A 1 C6 -0.039 REMARK 500 DC A 1 C4 DC A 1 C5 0.065 REMARK 500 DG A 2 P DG A 2 OP2 -0.120 REMARK 500 DG A 2 C4' DG A 2 C3' 0.106 REMARK 500 DG A 2 C3' DG A 2 C2' -0.051 REMARK 500 DG A 2 O4' DG A 2 C1' 0.084 REMARK 500 DG A 2 O4' DG A 2 C4' -0.094 REMARK 500 DG A 2 N1 DG A 2 C2 -0.058 REMARK 500 DG A 2 C2 DG A 2 N3 0.060 REMARK 500 DG A 2 C6 DG A 2 N1 -0.112 REMARK 500 DG A 2 N7 DG A 2 C8 0.046 REMARK 500 DG A 2 C8 DG A 2 N9 -0.053 REMARK 500 DG A 2 N9 DG A 2 C4 0.082 REMARK 500 DG A 2 C2 DG A 2 N2 -0.118 REMARK 500 DC A 3 C5' DC A 3 C4' 0.048 REMARK 500 DC A 3 C2' DC A 3 C1' 0.175 REMARK 500 DC A 3 N3 DC A 3 C4 0.093 REMARK 500 DG A 4 C5' DG A 4 C4' -0.096 REMARK 500 DG A 4 C4' DG A 4 C3' 0.125 REMARK 500 DG A 4 C3' DG A 4 C2' -0.083 REMARK 500 DG A 4 O4' DG A 4 C1' 0.074 REMARK 500 DG A 4 N7 DG A 4 C8 0.070 REMARK 500 DT A 5 P DT A 5 OP2 -0.106 REMARK 500 DT A 5 C4' DT A 5 C3' 0.083 REMARK 500 DT A 5 C2' DT A 5 C1' 0.100 REMARK 500 DT A 5 C2 DT A 5 N3 0.048 REMARK 500 DG A 6 C3' DG A 6 C2' -0.081 REMARK 500 DG A 6 O3' DG A 6 C3' 0.086 REMARK 500 DG A 6 C2 DG A 6 N2 -0.067 REMARK 500 DC B 1 C5' DC B 1 C4' 0.053 REMARK 500 DC B 1 C4' DC B 1 C3' 0.089 REMARK 500 DC B 1 N1 DC B 1 C6 0.041 REMARK 500 DC B 1 N3 DC B 1 C4 0.064 REMARK 500 DG B 2 C5' DG B 2 C4' -0.071 REMARK 500 DG B 2 C4' DG B 2 C3' 0.089 REMARK 500 DG B 2 N3 DG B 2 C4 0.050 REMARK 500 DG B 2 C4 DG B 2 C5 -0.045 REMARK 500 DG B 2 C6 DG B 2 N1 -0.052 REMARK 500 DG B 2 O3' DC B 3 P -0.090 REMARK 500 DC B 3 C5' DC B 3 C4' 0.045 REMARK 500 DC B 3 C4' DC B 3 C3' 0.060 REMARK 500 DC B 3 C2' DC B 3 C1' 0.062 REMARK 500 DC B 3 N1 DC B 3 C6 0.039 REMARK 500 DC B 3 C2 DC B 3 N3 0.077 REMARK 500 DC B 3 N3 DC B 3 C4 0.052 REMARK 500 DG B 4 P DG B 4 OP1 -0.147 REMARK 500 REMARK 500 THIS ENTRY HAS 74 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC A 1 C3' - C2' - C1' ANGL. DEV. = -5.1 DEGREES REMARK 500 DC A 1 N1 - C2 - N3 ANGL. DEV. = -4.3 DEGREES REMARK 500 DC A 1 C2 - N3 - C4 ANGL. DEV. = 6.9 DEGREES REMARK 500 DC A 1 N3 - C4 - C5 ANGL. DEV. = -5.1 DEGREES REMARK 500 DC A 1 C5 - C6 - N1 ANGL. DEV. = 4.1 DEGREES REMARK 500 DC A 1 N3 - C2 - O2 ANGL. DEV. = 5.5 DEGREES REMARK 500 DC A 1 N3 - C4 - N4 ANGL. DEV. = 6.0 DEGREES REMARK 500 DC A 1 C3' - O3' - P ANGL. DEV. = 7.6 DEGREES REMARK 500 DG A 2 O4' - C4' - C3' ANGL. DEV. = -3.2 DEGREES REMARK 500 DG A 2 C4' - C3' - C2' ANGL. DEV. = 7.4 DEGREES REMARK 500 DG A 2 O4' - C1' - C2' ANGL. DEV. = 4.9 DEGREES REMARK 500 DG A 2 N1 - C2 - N3 ANGL. DEV. = -3.9 DEGREES REMARK 500 DG A 2 C4 - C5 - C6 ANGL. DEV. = -4.6 DEGREES REMARK 500 DG A 2 C5 - C6 - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 DG A 2 N1 - C2 - N2 ANGL. DEV. = 11.8 DEGREES REMARK 500 DG A 2 N3 - C2 - N2 ANGL. DEV. = -8.0 DEGREES REMARK 500 DG A 2 N1 - C6 - O6 ANGL. DEV. = 5.0 DEGREES REMARK 500 DG A 2 C5 - C6 - O6 ANGL. DEV. = -9.6 DEGREES REMARK 500 DG A 2 C3' - O3' - P ANGL. DEV. = 7.8 DEGREES REMARK 500 DC A 3 C3' - C2' - C1' ANGL. DEV. = -8.3 DEGREES REMARK 500 DC A 3 N3 - C4 - C5 ANGL. DEV. = -3.3 DEGREES REMARK 500 DC A 3 C5 - C4 - N4 ANGL. DEV. = 4.8 DEGREES REMARK 500 DC A 3 C3' - O3' - P ANGL. DEV. = 9.2 DEGREES REMARK 500 DG A 4 O4' - C4' - C3' ANGL. DEV. = -5.8 DEGREES REMARK 500 DG A 4 C4' - C3' - C2' ANGL. DEV. = 6.2 DEGREES REMARK 500 DG A 4 O4' - C1' - C2' ANGL. DEV. = 5.7 DEGREES REMARK 500 DG A 4 O4' - C1' - N9 ANGL. DEV. = -5.2 DEGREES REMARK 500 DG A 4 C6 - N1 - C2 ANGL. DEV. = -5.6 DEGREES REMARK 500 DG A 4 C5 - C6 - N1 ANGL. DEV. = 5.6 DEGREES REMARK 500 DG A 4 C4 - C5 - N7 ANGL. DEV. = 3.2 DEGREES REMARK 500 DG A 4 C5 - N7 - C8 ANGL. DEV. = -3.3 DEGREES REMARK 500 DG A 4 C5 - C6 - O6 ANGL. DEV. = -4.6 DEGREES REMARK 500 DT A 5 C3' - C2' - C1' ANGL. DEV. = -5.8 DEGREES REMARK 500 DT A 5 C2 - N3 - C4 ANGL. DEV. = -3.8 DEGREES REMARK 500 DT A 5 N3 - C4 - C5 ANGL. DEV. = 3.6 DEGREES REMARK 500 DT A 5 N3 - C4 - O4 ANGL. DEV. = -4.3 DEGREES REMARK 500 DG A 6 C2 - N3 - C4 ANGL. DEV. = 5.0 DEGREES REMARK 500 DG A 6 N1 - C6 - O6 ANGL. DEV. = 4.3 DEGREES REMARK 500 DG A 6 C5 - C6 - O6 ANGL. DEV. = -7.3 DEGREES REMARK 500 DC B 1 O5' - C5' - C4' ANGL. DEV. = -5.5 DEGREES REMARK 500 DC B 1 O4' - C1' - C2' ANGL. DEV. = 5.2 DEGREES REMARK 500 DC B 1 C2 - N3 - C4 ANGL. DEV. = 4.8 DEGREES REMARK 500 DC B 1 N3 - C4 - C5 ANGL. DEV. = -3.9 DEGREES REMARK 500 DC B 1 C5 - C6 - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 DG B 2 O4' - C1' - C2' ANGL. DEV. = 3.0 DEGREES REMARK 500 DG B 2 N3 - C4 - C5 ANGL. DEV. = -4.0 DEGREES REMARK 500 DG B 2 C5 - C6 - N1 ANGL. DEV. = 4.0 DEGREES REMARK 500 DG B 2 N9 - C4 - C5 ANGL. DEV. = 4.6 DEGREES REMARK 500 DC B 3 N3 - C4 - C5 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC B 3 N1 - C2 - O2 ANGL. DEV. = 5.0 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 73 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1VTT A 1 6 PDB 1VTT 1VTT 1 6 DBREF 1VTT B 1 6 PDB 1VTT 1VTT 1 6 SEQRES 1 A 6 DC DG DC DG DT DG SEQRES 1 B 6 DC DG DC DG DT DG CRYST1 17.450 31.630 45.560 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.057307 0.000000 0.000000 0.00000 SCALE2 0.000000 0.031616 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021949 0.00000 ATOM 1 O5' DC A 1 19.153 17.927 18.941 1.00 9.08 O ATOM 2 C5' DC A 1 19.371 17.151 20.192 1.00 9.62 C ATOM 3 C4' DC A 1 18.268 15.984 20.253 1.00 8.33 C ATOM 4 O4' DC A 1 17.074 16.606 20.723 1.00 9.56 O ATOM 5 C3' DC A 1 17.916 15.288 18.833 1.00 9.20 C ATOM 6 O3' DC A 1 17.668 13.910 19.003 1.00 11.04 O ATOM 7 C2' DC A 1 16.600 16.016 18.337 1.00 8.92 C ATOM 8 C1' DC A 1 15.985 16.351 19.799 1.00 8.80 C ATOM 9 N1 DC A 1 15.266 17.628 19.620 1.00 9.16 N ATOM 10 C2 DC A 1 13.813 17.480 19.391 1.00 9.02 C ATOM 11 O2 DC A 1 13.385 16.378 19.254 1.00 10.13 O ATOM 12 N3 DC A 1 13.146 18.617 19.297 1.00 8.44 N ATOM 13 C4 DC A 1 13.663 19.881 19.386 1.00 8.11 C ATOM 14 N4 DC A 1 12.956 20.998 19.163 1.00 9.17 N ATOM 15 C5 DC A 1 15.125 19.992 19.650 1.00 9.40 C ATOM 16 C6 DC A 1 15.780 18.835 19.825 1.00 8.86 C ATOM 17 P DG A 2 18.728 12.711 18.889 1.00 12.41 P ATOM 18 OP1 DG A 2 19.591 12.995 17.757 1.00 13.33 O ATOM 19 OP2 DG A 2 17.941 11.597 18.837 1.00 15.52 O ATOM 20 O5' DG A 2 19.517 12.794 20.264 1.00 10.03 O ATOM 21 C5' DG A 2 19.019 12.511 21.480 1.00 8.08 C ATOM 22 C4' DG A 2 20.005 13.020 22.472 1.00 8.14 C ATOM 23 O4' DG A 2 20.245 14.348 22.397 1.00 8.11 O ATOM 24 C3' DG A 2 19.595 12.856 24.046 1.00 9.58 C ATOM 25 O3' DG A 2 19.862 11.484 24.488 1.00 10.71 O ATOM 26 C2' DG A 2 20.213 13.913 24.851 1.00 9.24 C ATOM 27 C1' DG A 2 20.434 14.938 23.767 1.00 9.14 C ATOM 28 N9 DG A 2 19.607 16.168 23.798 1.00 9.79 N ATOM 29 C8 DG A 2 19.987 17.432 23.856 1.00 10.26 C ATOM 30 N7 DG A 2 18.992 18.339 23.746 1.00 9.48 N ATOM 31 C5 DG A 2 17.842 17.516 23.675 1.00 9.57 C ATOM 32 C6 DG A 2 16.404 17.796 23.520 1.00 8.85 C ATOM 33 O6 DG A 2 16.027 18.963 23.471 1.00 8.69 O ATOM 34 N1 DG A 2 15.659 16.777 23.314 1.00 7.00 N ATOM 35 C2 DG A 2 15.990 15.504 23.317 1.00 7.62 C ATOM 36 N2 DG A 2 15.260 14.536 23.156 1.00 8.13 N ATOM 37 N3 DG A 2 17.316 15.134 23.448 1.00 8.34 N ATOM 38 C4 DG A 2 18.157 16.193 23.656 1.00 9.23 C ATOM 39 P DC A 3 18.805 10.414 25.027 1.00 11.76 P ATOM 40 OP1 DC A 3 19.567 9.256 25.520 1.00 11.96 O ATOM 41 OP2 DC A 3 17.786 10.191 24.034 1.00 12.23 O ATOM 42 O5' DC A 3 18.248 11.195 26.255 1.00 9.26 O ATOM 43 C5' DC A 3 17.637 10.541 27.396 1.00 7.68 C ATOM 44 C4' DC A 3 16.170 11.041 27.573 1.00 7.10 C ATOM 45 O4' DC A 3 16.169 12.390 28.105 1.00 6.19 O ATOM 46 C3' DC A 3 15.332 11.047 26.238 1.00 7.34 C ATOM 47 O3' DC A 3 14.015 10.524 26.611 1.00 8.35 O ATOM 48 C2' DC A 3 15.363 12.479 25.748 1.00 6.61 C ATOM 49 C1' DC A 3 15.295 13.142 27.305 1.00 6.75 C ATOM 50 N1 DC A 3 15.812 14.507 27.163 1.00 6.29 N ATOM 51 C2 DC A 3 15.004 15.588 26.978 1.00 6.34 C ATOM 52 O2 DC A 3 13.772 15.403 26.908 1.00 7.33 O ATOM 53 N3 DC A 3 15.482 16.827 26.836 1.00 7.04 N ATOM 54 C4 DC A 3 16.891 17.029 26.955 1.00 6.95 C ATOM 55 N4 DC A 3 17.317 18.289 26.818 1.00 6.89 N ATOM 56 C5 DC A 3 17.758 15.859 27.058 1.00 7.27 C ATOM 57 C6 DC A 3 17.177 14.671 27.272 1.00 7.25 C ATOM 58 P DG A 4 13.496 9.034 26.582 1.00 9.89 P ATOM 59 OP1 DG A 4 14.031 8.349 25.472 1.00 10.43 O ATOM 60 OP2 DG A 4 12.091 9.148 26.613 1.00 11.36 O ATOM 61 O5' DG A 4 13.993 8.347 27.933 1.00 8.75 O ATOM 62 C5' DG A 4 13.687 8.772 29.165 1.00 6.36 C ATOM 63 C4' DG A 4 14.383 8.046 30.157 1.00 6.73 C ATOM 64 O4' DG A 4 15.825 8.398 30.017 1.00 7.43 O ATOM 65 C3' DG A 4 14.152 8.554 31.714 1.00 6.80 C ATOM 66 O3' DG A 4 13.084 7.655 32.184 1.00 8.44 O ATOM 67 C2' DG A 4 15.376 8.413 32.446 1.00 6.58 C ATOM 68 C1' DG A 4 16.398 8.551 31.388 1.00 7.15 C ATOM 69 N9 DG A 4 17.114 9.794 31.298 1.00 7.11 N ATOM 70 C8 DG A 4 18.471 9.883 31.271 1.00 7.22 C ATOM 71 N7 DG A 4 18.948 11.162 31.110 1.00 6.66 N ATOM 72 C5 DG A 4 17.761 11.892 31.124 1.00 6.82 C ATOM 73 C6 DG A 4 17.540 13.289 31.031 1.00 6.94 C ATOM 74 O6 DG A 4 18.450 14.133 30.908 1.00 7.33 O ATOM 75 N1 DG A 4 16.214 13.721 30.969 1.00 5.63 N ATOM 76 C2 DG A 4 15.214 12.812 31.016 1.00 6.00 C ATOM 77 N2 DG A 4 13.995 13.278 30.958 1.00 6.83 N ATOM 78 N3 DG A 4 15.377 11.511 31.209 1.00 5.58 N ATOM 79 C4 DG A 4 16.636 11.122 31.179 1.00 6.31 C ATOM 80 P DT A 5 11.660 8.218 32.687 1.00 8.92 P ATOM 81 OP1 DT A 5 10.882 7.099 33.114 1.00 11.82 O ATOM 82 OP2 DT A 5 11.189 9.000 31.653 1.00 11.17 O ATOM 83 O5' DT A 5 12.050 9.079 33.926 1.00 7.66 O ATOM 84 C5' DT A 5 11.180 9.327 35.046 1.00 5.66 C ATOM 85 C4' DT A 5 11.175 10.742 35.437 1.00 5.06 C ATOM 86 O4' DT A 5 12.475 11.210 35.900 1.00 5.19 O ATOM 87 C3' DT A 5 10.860 11.754 34.222 1.00 4.41 C ATOM 88 O3' DT A 5 10.096 12.816 34.695 1.00 7.28 O ATOM 89 C2' DT A 5 12.232 12.270 33.745 1.00 3.91 C ATOM 90 C1' DT A 5 12.916 12.362 35.209 1.00 4.20 C ATOM 91 N1 DT A 5 14.379 12.143 35.039 1.00 4.47 N ATOM 92 C2 DT A 5 15.045 13.296 34.685 1.00 5.55 C ATOM 93 O2 DT A 5 14.488 14.374 34.542 1.00 6.48 O ATOM 94 N3 DT A 5 16.459 13.172 34.610 1.00 4.51 N ATOM 95 C4 DT A 5 17.136 11.982 34.848 1.00 4.50 C ATOM 96 O4 DT A 5 18.386 12.029 34.700 1.00 6.49 O ATOM 97 C5 DT A 5 16.387 10.820 35.165 1.00 4.85 C ATOM 98 C7 DT A 5 17.076 9.498 35.515 1.00 5.54 C ATOM 99 C6 DT A 5 15.035 10.926 35.265 1.00 4.00 C ATOM 100 P DG A 6 8.460 12.918 34.673 1.00 6.37 P ATOM 101 OP1 DG A 6 8.115 12.567 33.338 1.00 6.87 O ATOM 102 OP2 DG A 6 8.127 14.162 35.245 1.00 6.61 O ATOM 103 O5' DG A 6 7.997 11.682 35.579 1.00 6.04 O ATOM 104 C5' DG A 6 7.815 11.875 36.949 1.00 5.43 C ATOM 105 C4' DG A 6 7.381 10.521 37.571 1.00 6.18 C ATOM 106 O4' DG A 6 8.464 9.580 37.520 1.00 6.88 O ATOM 107 C3' DG A 6 7.023 10.655 39.076 1.00 7.84 C ATOM 108 O3' DG A 6 5.929 9.628 39.322 1.00 8.75 O ATOM 109 C2' DG A 6 8.240 10.326 39.762 1.00 6.90 C ATOM 110 C1' DG A 6 8.852 9.264 38.864 1.00 5.88 C ATOM 111 N9 DG A 6 10.314 9.258 38.839 1.00 4.82 N ATOM 112 C8 DG A 6 11.085 8.136 38.785 1.00 6.21 C ATOM 113 N7 DG A 6 12.401 8.372 38.745 1.00 6.52 N ATOM 114 C5 DG A 6 12.454 9.754 38.757 1.00 5.67 C ATOM 115 C6 DG A 6 13.597 10.664 38.643 1.00 5.36 C ATOM 116 O6 DG A 6 14.745 10.239 38.586 1.00 6.67 O ATOM 117 N1 DG A 6 13.274 11.974 38.684 1.00 5.30 N ATOM 118 C2 DG A 6 11.990 12.428 38.721 1.00 5.42 C ATOM 119 N2 DG A 6 11.792 13.685 38.652 1.00 6.12 N ATOM 120 N3 DG A 6 10.958 11.614 38.750 1.00 5.08 N ATOM 121 C4 DG A 6 11.215 10.330 38.763 1.00 4.93 C TER 122 DG A 6 ATOM 123 O5' DC B 1 19.015 18.815 38.237 1.00 10.48 O ATOM 124 C5' DC B 1 18.597 19.542 37.029 1.00 8.45 C ATOM 125 C4' DC B 1 17.036 19.435 37.046 1.00 6.33 C ATOM 126 O4' DC B 1 16.739 18.086 36.549 1.00 6.07 O ATOM 127 C3' DC B 1 16.220 19.611 38.432 1.00 6.47 C ATOM 128 O3' DC B 1 14.983 20.205 38.092 1.00 6.26 O ATOM 129 C2' DC B 1 16.029 18.216 38.958 1.00 4.02 C ATOM 130 C1' DC B 1 15.894 17.478 37.591 1.00 5.96 C ATOM 131 N1 DC B 1 16.189 16.024 37.701 1.00 5.91 N ATOM 132 C2 DC B 1 15.159 15.090 37.925 1.00 6.83 C ATOM 133 O2 DC B 1 14.018 15.466 38.021 1.00 7.17 O ATOM 134 N3 DC B 1 15.510 13.810 38.047 1.00 4.83 N ATOM 135 C4 DC B 1 16.828 13.342 38.054 1.00 7.20 C ATOM 136 N4 DC B 1 17.041 11.990 38.174 1.00 7.14 N ATOM 137 C5 DC B 1 17.893 14.307 37.877 1.00 6.97 C ATOM 138 C6 DC B 1 17.514 15.551 37.659 1.00 6.74 C ATOM 139 P DG B 2 14.738 21.793 38.045 1.00 7.60 P ATOM 140 OP1 DG B 2 15.336 22.381 39.158 1.00 8.69 O ATOM 141 OP2 DG B 2 13.246 21.904 37.961 1.00 9.18 O ATOM 142 O5' DG B 2 15.423 22.330 36.709 1.00 5.93 O ATOM 143 C5' DG B 2 14.989 21.998 35.437 1.00 4.18 C ATOM 144 C4' DG B 2 15.878 22.546 34.448 1.00 5.27 C ATOM 145 O4' DG B 2 17.207 21.962 34.542 1.00 4.49 O ATOM 146 C3' DG B 2 15.480 22.260 32.906 1.00 5.59 C ATOM 147 O3' DG B 2 14.721 23.388 32.494 1.00 5.55 O ATOM 148 C2' DG B 2 16.749 21.973 32.210 1.00 4.49 C ATOM 149 C1' DG B 2 17.680 21.529 33.265 1.00 4.73 C ATOM 150 N9 DG B 2 18.008 20.108 33.336 1.00 4.51 N ATOM 151 C8 DG B 2 19.251 19.543 33.208 1.00 5.95 C ATOM 152 N7 DG B 2 19.230 18.218 33.355 1.00 6.15 N ATOM 153 C5 DG B 2 17.869 17.910 33.592 1.00 4.31 C ATOM 154 C6 DG B 2 17.206 16.675 33.781 1.00 5.11 C ATOM 155 O6 DG B 2 17.754 15.557 33.867 1.00 5.56 O ATOM 156 N1 DG B 2 15.881 16.752 33.958 1.00 4.42 N ATOM 157 C2 DG B 2 15.175 17.944 33.952 1.00 4.77 C ATOM 158 N2 DG B 2 13.911 17.952 34.227 1.00 4.57 N ATOM 159 N3 DG B 2 15.782 19.128 33.731 1.00 4.52 N ATOM 160 C4 DG B 2 17.169 19.045 33.563 1.00 4.79 C ATOM 161 P DC B 3 14.017 23.540 31.159 1.00 7.46 P ATOM 162 OP1 DC B 3 14.996 23.373 30.089 1.00 11.66 O ATOM 163 OP2 DC B 3 13.368 24.812 31.069 1.00 9.67 O ATOM 164 O5' DC B 3 13.046 22.275 31.020 1.00 6.52 O ATOM 165 C5' DC B 3 12.197 22.203 29.856 1.00 5.99 C ATOM 166 C4' DC B 3 11.625 20.757 29.775 1.00 4.95 C ATOM 167 O4' DC B 3 12.697 19.896 29.214 1.00 5.78 O ATOM 168 C3' DC B 3 11.188 20.168 31.185 1.00 5.76 C ATOM 169 O3' DC B 3 9.949 19.414 30.891 1.00 7.27 O ATOM 170 C2' DC B 3 12.276 19.191 31.539 1.00 4.75 C ATOM 171 C1' DC B 3 12.766 18.755 30.100 1.00 5.28 C ATOM 172 N1 DC B 3 14.164 18.326 30.127 1.00 4.98 N ATOM 173 C2 DC B 3 14.397 16.981 30.368 1.00 6.43 C ATOM 174 O2 DC B 3 13.504 16.155 30.596 1.00 6.85 O ATOM 175 N3 DC B 3 15.758 16.559 30.494 1.00 4.83 N ATOM 176 C4 DC B 3 16.742 17.509 30.265 1.00 6.42 C ATOM 177 N4 DC B 3 18.003 17.000 30.325 1.00 6.85 N ATOM 178 C5 DC B 3 16.492 18.861 30.010 1.00 5.09 C ATOM 179 C6 DC B 3 15.207 19.238 29.886 1.00 5.29 C ATOM 180 P DG B 4 8.476 20.001 30.954 1.00 7.57 P ATOM 181 OP1 DG B 4 8.416 20.766 32.050 1.00 7.64 O ATOM 182 OP2 DG B 4 7.743 18.757 30.899 1.00 8.63 O ATOM 183 O5' DG B 4 8.287 20.887 29.705 1.00 6.85 O ATOM 184 C5' DG B 4 8.212 20.229 28.449 1.00 5.36 C ATOM 185 C4' DG B 4 8.243 21.350 27.408 1.00 6.60 C ATOM 186 O4' DG B 4 9.336 22.223 27.427 1.00 6.20 O ATOM 187 C3' DG B 4 8.279 20.765 25.907 1.00 7.00 C ATOM 188 O3' DG B 4 6.879 20.517 25.482 1.00 8.37 O ATOM 189 C2' DG B 4 9.033 21.676 25.093 1.00 6.80 C ATOM 190 C1' DG B 4 9.806 22.557 26.040 1.00 7.79 C ATOM 191 N9 DG B 4 11.268 22.282 26.039 1.00 6.26 N ATOM 192 C8 DG B 4 12.213 23.212 26.104 1.00 7.94 C ATOM 193 N7 DG B 4 13.451 22.727 26.189 1.00 7.73 N ATOM 194 C5 DG B 4 13.252 21.396 26.167 1.00 7.82 C ATOM 195 C6 DG B 4 14.159 20.268 26.337 1.00 7.09 C ATOM 196 O6 DG B 4 15.389 20.480 26.497 1.00 7.74 O ATOM 197 N1 DG B 4 13.625 19.052 26.480 1.00 5.40 N ATOM 198 C2 DG B 4 12.248 18.798 26.414 1.00 6.63 C ATOM 199 N2 DG B 4 11.843 17.598 26.451 1.00 6.65 N ATOM 200 N3 DG B 4 11.407 19.809 26.227 1.00 6.29 N ATOM 201 C4 DG B 4 11.891 21.056 26.147 1.00 6.78 C ATOM 202 P DT B 5 6.453 19.160 24.843 1.00 8.47 P ATOM 203 OP1 DT B 5 5.024 19.328 24.558 1.00 10.94 O ATOM 204 OP2 DT B 5 6.781 18.008 25.680 1.00 8.62 O ATOM 205 O5' DT B 5 7.174 19.234 23.504 1.00 7.92 O ATOM 206 C5' DT B 5 6.896 18.406 22.317 1.00 7.68 C ATOM 207 C4' DT B 5 7.938 17.438 21.946 1.00 6.87 C ATOM 208 O4' DT B 5 9.202 18.137 21.450 1.00 7.97 O ATOM 209 C3' DT B 5 8.526 16.607 23.213 1.00 7.78 C ATOM 210 O3' DT B 5 8.744 15.213 22.607 1.00 9.97 O ATOM 211 C2' DT B 5 9.819 17.275 23.627 1.00 5.17 C ATOM 212 C1' DT B 5 10.302 17.746 22.138 1.00 7.09 C ATOM 213 N1 DT B 5 11.163 18.929 22.282 1.00 7.70 N ATOM 214 C2 DT B 5 12.529 18.580 22.591 1.00 8.01 C ATOM 215 O2 DT B 5 12.952 17.450 22.714 1.00 6.95 O ATOM 216 N3 DT B 5 13.340 19.649 22.843 1.00 6.82 N ATOM 217 C4 DT B 5 13.021 21.009 22.631 1.00 8.01 C ATOM 218 O4 DT B 5 13.905 21.896 22.801 1.00 9.23 O ATOM 219 C5 DT B 5 11.592 21.325 22.370 1.00 7.95 C ATOM 220 C7 DT B 5 11.131 22.762 22.226 1.00 8.56 C ATOM 221 C6 DT B 5 10.778 20.253 22.188 1.00 6.43 C ATOM 222 P DG B 6 7.702 14.045 22.657 1.00 10.32 P ATOM 223 OP1 DG B 6 7.248 14.027 23.957 1.00 9.16 O ATOM 224 OP2 DG B 6 8.338 12.873 21.943 1.00 12.00 O ATOM 225 O5' DG B 6 6.404 14.486 21.727 1.00 9.99 O ATOM 226 C5' DG B 6 6.571 14.293 20.327 1.00 9.39 C ATOM 227 C4' DG B 6 5.388 14.941 19.715 1.00 8.27 C ATOM 228 O4' DG B 6 5.398 16.366 19.840 1.00 7.83 O ATOM 229 C3' DG B 6 5.257 14.623 18.112 1.00 10.55 C ATOM 230 O3' DG B 6 3.778 14.660 17.779 1.00 12.49 O ATOM 231 C2' DG B 6 5.704 15.790 17.373 1.00 9.79 C ATOM 232 C1' DG B 6 5.434 16.858 18.459 1.00 8.99 C ATOM 233 N9 DG B 6 6.343 17.934 18.425 1.00 9.79 N ATOM 234 C8 DG B 6 6.117 19.243 18.429 1.00 10.67 C ATOM 235 N7 DG B 6 7.154 20.053 18.487 1.00 11.14 N ATOM 236 C5 DG B 6 8.190 19.146 18.575 1.00 10.07 C ATOM 237 C6 DG B 6 9.623 19.369 18.696 1.00 9.70 C ATOM 238 O6 DG B 6 10.130 20.499 18.786 1.00 10.36 O ATOM 239 N1 DG B 6 10.301 18.231 18.728 1.00 9.52 N ATOM 240 C2 DG B 6 9.884 16.999 18.692 1.00 9.54 C ATOM 241 N2 DG B 6 10.585 16.001 18.782 1.00 10.60 N ATOM 242 N3 DG B 6 8.517 16.724 18.645 1.00 9.28 N ATOM 243 C4 DG B 6 7.809 17.850 18.497 1.00 9.85 C TER 244 DG B 6 MASTER 341 0 0 0 0 0 0 6 242 2 0 2 END