23.70 2.540 -11.894 14.501 A O5' DC 1 ATOM A O5' DC 1 1 1.00 1 O 14.90 2.175 -12.369 15.800 A C5' DC 1 ATOM A C5' DC 1 1 1.00 1 C 13.31 1.381 -13.658 15.805 A C4' DC 1 ATOM A C4' DC 1 1 1.00 1 C 12.14 0.122 -13.485 15.107 A O4' DC 1 ATOM A O4' DC 1 1 1.00 1 O 12.18 2.065 -14.890 15.185 A C3' DC 1 ATOM A C3' DC 1 1 1.00 1 C 13.59 1.843 -16.077 15.980 A O3' DC 1 ATOM A O3' DC 1 1 1.00 1 O 12.12 1.304 -15.094 13.889 A C2' DC 1 ATOM A C2' DC 1 1 1.00 1 C 11.77 -0.083 -14.601 14.260 A C1' DC 1 ATOM A C1' DC 1 1 1.00 1 C 11.39 -0.891 -14.164 13.108 A N1 DC 1 ATOM A N1 DC 1 1 1.00 1 N 12.12 -1.681 -15.117 12.469 A C2 DC 1 ATOM A C2 DC 1 1 1.00 1 C 13.31 -1.657 -16.281 12.893 A O2 DC 1 ATOM A O2 DC 1 1 1.00 1 O 10.05 -2.443 -14.751 11.414 A N3 DC 1 ATOM A N3 DC 1 1 1.00 1 N 9.49 -2.429 -13.486 10.996 A C4 DC 1 ATOM A C4 DC 1 1 1.00 1 C 9.82 -3.199 -13.167 9.957 A N4 DC 1 ATOM A N4 DC 1 1 1.00 1 N 10.64 -1.621 -12.486 11.628 A C5 DC 1 ATOM A C5 DC 1 1 1.00 1 C 10.01 -0.875 -12.868 12.673 A C6 DC 1 ATOM A C6 DC 1 1 1.00 1 C 11.64 2.944 -16.562 17.039 A P DG 2 ATOM A P DG 1 2 1.00 1 P 14.92 4.291 -16.263 16.522 A OP1 DG 2 ATOM A OP1 DG 1 2 1.00 1 O 13.56 2.578 -17.948 17.386 A OP2 DG 2 ATOM A OP2 DG 1 2 1.00 1 O 11.73 2.705 -15.619 18.312 A O5' DG 2 ATOM A O5' DG 1 2 1.00 1 O 10.51 1.435 -15.601 18.941 A C5' DG 2 ATOM A C5' DG 1 2 1.00 1 C 10.62 1.396 -14.523 19.995 A C4' DG 2 ATOM A C4' DG 1 2 1.00 1 C 10.69 1.521 -13.220 19.387 A O4' DG 2 ATOM A O4' DG 1 2 1.00 1 O 10.38 0.087 -14.519 20.776 A C3' DG 2 ATOM A C3' DG 1 2 1.00 1 C 9.33 0.297 -15.219 21.997 A O3' DG 2 ATOM A O3' DG 1 2 1.00 1 O 11.28 -0.207 -13.050 21.018 A C2' DG 2 ATOM A C2' DG 1 2 1.00 1 C 9.53 0.606 -12.306 19.959 A C1' DG 2 ATOM A C1' DG 1 2 1.00 1 C 10.47 -0.147 -11.685 18.875 A N9 DG 2 ATOM A N9 DG 1 2 1.00 1 N 9.60 -0.033 -10.389 18.459 A C8 DG 2 ATOM A C8 DG 1 2 1.00 1 C 8.87 -0.805 -10.104 17.448 A N7 DG 2 ATOM A N7 DG 1 2 1.00 1 N 9.58 -1.464 -11.294 17.165 A C5 DG 2 ATOM A C5 DG 1 2 1.00 1 C 10.30 -2.400 -11.618 16.124 A C6 DG 2 ATOM A C6 DG 1 2 1.00 1 C 11.88 -2.819 -10.896 15.201 A O6 DG 2 ATOM A O6 DG 1 2 1.00 1 O 9.79 -2.833 -12.931 16.220 A N1 DG 2 ATOM A N1 DG 1 2 1.00 1 N 10.03 -2.414 -13.838 17.167 A C2 DG 2 ATOM A C2 DG 1 2 1.00 1 C 8.26 -2.964 -15.063 17.094 A N2 DG 2 ATOM A N2 DG 1 2 1.00 1 N 10.15 -1.523 -13.563 18.118 A N3 DG 2 ATOM A N3 DG 1 2 1.00 1 N 10.13 -1.094 -12.279 18.051 A C4 DG 2 ATOM A C4 DG 1 2 1.00 1 C 10.43 -0.796 -16.251 22.506 A P DT 3 ATOM A P DT 1 3 1.00 1 P 12.15 -0.336 -16.787 23.809 A OP1 DT 3 ATOM A OP1 DT 1 3 1.00 1 O 12.79 -1.069 -17.196 21.398 A OP2 DT 3 ATOM A OP2 DT 1 3 1.00 1 O 11.78 -2.043 -15.292 22.756 A O5' DT 3 ATOM A O5' DT 1 3 1.00 1 O 10.17 -3.055 -15.624 23.697 A C5' DT 3 ATOM A C5' DT 1 3 1.00 1 C 11.07 -4.387 -15.746 22.997 A C4' DT 3 ATOM A C4' DT 1 3 1.00 1 C 9.13 -4.732 -14.485 22.371 A O4' DT 3 ATOM A O4' DT 1 3 1.00 1 O 12.23 -4.443 -16.809 21.889 A C3' DT 3 ATOM A C3' DT 1 3 1.00 1 C 14.74 -5.660 -17.573 21.987 A O3' DT 3 ATOM A O3' DT 1 3 1.00 1 O 10.52 -4.491 -15.979 20.615 A C2' DT 3 ATOM A C2' DT 1 3 1.00 1 C 9.08 -5.250 -14.754 21.090 A C1' DT 3 ATOM A C1' DT 1 3 1.00 1 C 9.13 -5.078 -13.547 20.252 A N1 DT 3 ATOM A N1 DT 1 3 1.00 1 N 9.87 -5.768 -13.535 19.054 A C2 DT 3 ATOM A C2 DT 1 3 1.00 1 C 9.77 -6.455 -14.465 18.676 A O2 DT 3 ATOM A O2 DT 1 3 1.00 1 O 8.48 -5.613 -12.402 18.313 A N3 DT 3 ATOM A N3 DT 1 3 1.00 1 N 9.32 -4.856 -11.300 18.624 A C4 DT 3 ATOM A C4 DT 1 3 1.00 1 C 12.08 -4.829 -10.354 17.845 A O4 DT 3 ATOM A O4 DT 1 3 1.00 1 O 9.08 -4.144 -11.369 19.890 A C5 DT 3 ATOM A C5 DT 1 3 1.00 1 C 9.00 -3.300 -10.210 20.314 A C7 DT 3 ATOM A C7 DT 1 3 1.00 1 C 8.14 -4.285 -12.482 20.634 A C6 DT 3 ATOM A C6 DT 1 3 1.00 1 C 8.82 -7.033 -12.367 23.100 A N1 1AP 4 HETATM A N1 1AP 1 4 1.00 1 N 8.32 -7.480 -13.559 23.533 A C2 1AP 4 HETATM A C2 1AP 1 4 1.00 1 C 11.41 -6.114 -13.619 25.269 A C4 1AP 4 HETATM A C4 1AP 1 4 1.00 1 C 11.56 -5.549 -12.400 24.937 A C5 1AP 4 HETATM A C5 1AP 1 4 1.00 1 C 8.58 -6.053 -11.751 23.792 A C6 1AP 4 HETATM A C6 1AP 1 4 1.00 1 C 13.43 -4.487 -13.101 26.644 A C8 1AP 4 HETATM A C8 1AP 1 4 1.00 1 C 8.74 -8.432 -14.181 22.829 A N2 1AP 4 HETATM A N2 1AP 1 4 1.00 1 N 10.25 -7.100 -14.259 24.601 A N3 1AP 4 HETATM A N3 1AP 1 4 1.00 1 N 11.40 -5.424 -14.062 26.381 A N9 1AP 4 HETATM A N9 1AP 1 4 1.00 1 N 13.35 -4.521 -12.082 25.821 A N7 1AP 4 HETATM A N7 1AP 1 4 1.00 1 N 11.27 -5.624 -10.565 23.365 A N6 1AP 4 HETATM A N6 1AP 1 4 1.00 1 N 17.21 -5.677 -19.004 22.735 A P 1AP 4 HETATM A P 1AP 1 4 1.00 1 P 16.71 -4.363 -19.670 22.599 A OP1 1AP 4 HETATM A OP1 1AP 1 4 1.00 1 O 19.25 -6.914 -19.691 22.300 A OP2 1AP 4 HETATM A OP2 1AP 1 4 1.00 1 O 18.28 -5.804 -18.642 24.280 A O5' 1AP 4 HETATM A O5' 1AP 1 4 1.00 1 O 16.94 -6.721 -17.664 24.738 A C5' 1AP 4 HETATM A C5' 1AP 1 4 1.00 1 C 14.83 -6.441 -17.323 26.185 A C4' 1AP 4 HETATM A C4' 1AP 1 4 1.00 1 C 14.64 -5.357 -16.370 26.243 A O4' 1AP 4 HETATM A O4' 1AP 1 4 1.00 1 O 12.47 -5.637 -15.306 27.124 A C1' 1AP 4 HETATM A C1' 1AP 1 4 1.00 1 C 15.22 -7.030 -15.571 27.724 A C2' 1AP 4 HETATM A C2' 1AP 1 4 1.00 1 C 15.16 -7.639 -16.660 26.850 A C3' 1AP 4 HETATM A C3' 1AP 1 4 1.00 1 C 20.81 -8.341 -17.533 27.652 A O3' 1AP 4 HETATM A O3' 1AP 1 4 1.00 1 O 19.51 -9.893 -17.963 27.146 A P DC 5 ATOM A A P DC 1 5 0.70 1 P 16.78 -9.651 -17.398 28.541 A P DC 5 ATOM B A P DC 1 5 0.30 1 P 23.56 -10.367 -18.934 28.092 A OP1 DC 5 ATOM A A OP1 DC 1 5 0.70 1 O 17.69 -9.280 -16.668 29.775 A OP1 DC 5 ATOM B A OP1 DC 1 5 0.30 1 O 22.10 -10.121 -18.126 25.724 A OP2 DC 5 ATOM A A OP2 DC 1 5 0.70 1 O 18.82 -10.348 -18.681 28.769 A OP2 DC 5 ATOM B A OP2 DC 1 5 0.30 1 O 17.68 -10.622 -16.570 27.520 A O5' DC 5 ATOM A O5' DC 1 5 1.00 1 O 13.51 -11.943 -16.459 27.927 A C5' DC 5 ATOM A C5' DC 1 5 1.00 1 C 11.33 -12.617 -15.406 27.078 A C4' DC 5 ATOM A C4' DC 1 5 1.00 1 C 11.33 -11.898 -14.154 27.172 A O4' DC 5 ATOM A O4' DC 1 5 1.00 1 O 13.89 -12.627 -15.762 25.585 A C3' DC 5 ATOM A C3' DC 1 5 1.00 1 C 16.41 -13.910 -15.458 25.045 A O3' DC 5 ATOM A O3' DC 1 5 1.00 1 O 11.55 -11.591 -14.827 24.993 A C2' DC 5 ATOM A C2' DC 1 5 1.00 1 C 9.80 -11.779 -13.624 25.871 A C1' DC 5 ATOM A C1' DC 1 5 1.00 1 C 8.93 -10.672 -12.659 25.863 A N1 DC 5 ATOM A N1 DC 1 5 1.00 1 N 8.04 -10.635 -11.699 24.843 A C2 DC 5 ATOM A C2 DC 1 5 1.00 1 C 10.38 -11.494 -11.738 23.960 A O2 DC 5 ATOM A O2 DC 1 5 1.00 1 O 8.16 -9.658 -10.770 24.837 A N3 DC 5 ATOM A N3 DC 1 5 1.00 1 N 6.71 -8.734 -10.774 25.794 A C4 DC 5 ATOM A C4 DC 1 5 1.00 1 C 7.94 -7.812 -9.819 25.760 A N4 DC 5 ATOM A N4 DC 1 5 1.00 1 N 8.06 -8.728 -11.760 26.839 A C5 DC 5 ATOM A C5 DC 1 5 1.00 1 C 7.18 -9.702 -12.679 26.830 A C6 DC 5 ATOM A C6 DC 1 5 1.00 1 C 19.40 -15.003 -16.623 24.897 A P DG 6 ATOM A P DG 1 6 1.00 1 P 22.06 -14.347 -17.831 24.340 A OP1 DG 6 ATOM A OP1 DG 1 6 1.00 1 O 22.86 -16.134 -15.990 24.180 A OP2 DG 6 ATOM A OP2 DG 1 6 1.00 1 O 18.51 -15.438 -16.952 26.398 A O5' DG 6 ATOM A O5' DG 1 6 1.00 1 O 16.74 -16.344 -16.098 27.091 A C5' DG 6 ATOM A C5' DG 1 6 1.00 1 C 14.24 -16.632 -16.657 28.459 A C4' DG 6 ATOM A C4' DG 1 6 1.00 1 C 13.63 -15.415 -16.591 29.227 A O4' DG 6 ATOM A O4' DG 1 6 1.00 1 O 14.00 -17.685 -15.877 29.243 A C3' DG 6 ATOM A C3' DG 1 6 1.00 1 C 14.70 -18.454 -16.779 30.039 A O3' DG 6 ATOM A O3' DG 1 6 1.00 1 O 12.81 -16.869 -14.944 30.114 A C2' DG 6 ATOM A C2' DG 1 6 1.00 1 C 12.91 -15.596 -15.746 30.354 A C1' DG 6 ATOM A C1' DG 1 6 1.00 1 C 13.14 -14.411 -14.964 30.510 A N9 DG 6 ATOM A N9 DG 1 6 1.00 1 N 11.88 -13.368 -15.228 31.360 A C8 DG 6 ATOM A C8 DG 1 6 1.00 1 C 13.96 -12.393 -14.364 31.255 A N7 DG 6 ATOM A N7 DG 1 6 1.00 1 N 11.41 -12.811 -13.480 30.264 A C5 DG 6 ATOM A C5 DG 1 6 1.00 1 C 10.26 -12.143 -12.373 29.678 A C6 DG 6 ATOM A C6 DG 1 6 1.00 1 C 10.12 -11.025 -11.924 29.950 A O6 DG 6 ATOM A O6 DG 1 6 1.00 1 O 11.40 -12.905 -11.785 28.674 A N1 DG 6 ATOM A N1 DG 1 6 1.00 1 N 13.34 -14.156 -12.201 28.288 A C2 DG 6 ATOM A C2 DG 1 6 1.00 1 C 14.57 -14.753 -11.469 27.347 A N2 DG 6 ATOM A N2 DG 1 6 1.00 1 N 13.44 -14.782 -13.242 28.807 A N3 DG 6 ATOM A N3 DG 1 6 1.00 1 N 11.97 -14.056 -13.832 29.790 A C4 DG 6 ATOM A C4 DG 1 6 1.00 1 C 16.52 -10.515 -14.760 32.420 A PT PTN 7 HETATM B PT PTN 2 0.30 1 PT 15.42 -9.512 -14.695 30.662 A N1 PTN 7 HETATM B N1 PTN 2 0.30 1 N 14.18 -11.530 -14.835 34.141 A N2 PTN 7 HETATM B N2 PTN 2 0.30 1 N 14.92 -8.791 -14.283 33.410 A N3 PTN 7 HETATM B N3 PTN 2 0.30 1 N 42.88 -6.908 -16.983 31.281 A N1 SPM 8 HETATM C N1 SPM 3 0.30 1 N 42.75 -6.671 -15.509 31.457 A C2 SPM 8 HETATM C C2 SPM 3 0.30 1 C 42.30 -5.363 -15.168 32.198 A C3 SPM 8 HETATM C C3 SPM 3 0.30 1 C 41.37 -5.630 -14.477 33.492 A C4 SPM 8 HETATM C C4 SPM 3 0.30 1 C 40.28 -5.874 -12.959 33.233 A N5 SPM 8 HETATM C N5 SPM 3 0.30 1 N 39.89 -4.558 -12.389 33.526 A C6 SPM 8 HETATM C C6 SPM 3 0.30 1 C 39.89 -4.351 -12.220 34.908 A C7 SPM 8 HETATM C C7 SPM 3 0.30 1 C 40.50 -3.938 -10.616 34.994 A C8 SPM 8 HETATM C C8 SPM 3 0.30 1 C 40.81 -3.291 -10.407 33.508 A C9 SPM 8 HETATM C C9 SPM 3 0.30 1 C 41.19 -2.713 -9.089 33.189 A N10 SPM 8 HETATM C N10 SPM 3 0.30 1 N 40.47 -3.708 -8.380 32.234 A C11 SPM 8 HETATM C C11 SPM 3 0.30 1 C 39.85 -3.488 -6.868 32.385 A C12 SPM 8 HETATM C C12 SPM 3 0.30 1 C 39.33 -4.599 -6.106 31.696 A C13 SPM 8 HETATM C C13 SPM 3 0.30 1 C 39.02 -4.418 -5.876 30.344 A N14 SPM 8 HETATM C N14 SPM 3 0.30 1 N 14.11 -1.986 -17.340 18.670 A O HOH 9 HETATM D O HOH 4 1.00 1 O 13.96 -0.082 -18.652 17.198 A O HOH 10 HETATM D O HOH 4 1.00 1 O 14.80 -1.859 -18.133 15.082 A O HOH 11 HETATM D O HOH 4 1.00 1 O 26.94 -1.258 -19.211 24.905 A O HOH 12 HETATM D O HOH 4 1.00 1 O 33.23 2.035 -18.092 24.098 A O HOH 13 HETATM D O HOH 4 1.00 1 O 39.98 -3.449 -18.850 26.453 A O HOH 14 HETATM D O HOH 4 1.00 1 O 23.80 -15.475 -13.274 23.454 A O HOH 15 HETATM D O HOH 4 0.50 1 O 40.32 4.143 -12.075 19.045 A O HOH 16 HETATM D O HOH 4 1.00 1 O 29.98 -9.814 -17.479 22.679 A O HOH 17 HETATM D O HOH 4 1.00 1 O 35.76 -5.768 -17.032 17.200 A O HOH 18 HETATM D O HOH 4 1.00 1 O 26.52 -1.279 -9.445 13.597 A O HOH 19 HETATM D O HOH 4 1.00 1 O 28.69 -9.747 -21.768 28.692 A O HOH 20 HETATM D O HOH 4 0.50 1 O 24.02 -3.549 -10.312 8.938 A O HOH 21 HETATM D O HOH 4 0.50 1 O 38.07 -2.570 -22.011 27.487 A O HOH 22 HETATM D O HOH 4 0.50 1 O 26.67 5.680 -13.756 16.944 A O HOH 23 HETATM D O HOH 4 0.50 1 O 38.13 3.597 -16.993 21.886 A O HOH 24 HETATM D O HOH 4 0.50 1 O 47.24 -1.320 -8.587 11.062 A O HOH 25 HETATM D O HOH 4 0.50 1 O 38.66 -11.258 -15.723 20.100 A O HOH 26 HETATM D O HOH 4 1.00 1 O 26.58 -6.821 -19.716 29.687 A O HOH 27 HETATM D O HOH 4 0.50 1 O 35.47 -6.368 -11.992 29.842 A O HOH 28 HETATM D O HOH 4 1.00 1 O 38.70 -6.231 -9.852 28.059 A O HOH 29 HETATM D O HOH 4 1.00 1 O 29.68 -4.524 -9.332 25.931 A O HOH 30 HETATM D O HOH 4 1.00 1 O 27.83 -4.210 -19.087 17.924 A O HOH 31 HETATM D O HOH 4 0.50 1 O 0.039694 0.022917 0.000000 0.000000 0.045834 0.000000 0.000000 0.000000 0.025675 0.00000 0.00000 0.00000 Parkinson, G.N. Arvantis, G.M. Lessinger, L. Ginell, S.L. Jones, R. Gaffney, B. Berman, H.M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 25.193 25.193 38.948 C10 H15 N6 O6 P 346.236 n 2,6-DIAMINOPURINE NUCLEOTIDE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer H9 N3 Pt 2 246.170 PLATINUM TRIAMINE ION non-polymer C10 H26 N4 202.340 SPERMINE non-polymer Y 1 N N Y 2 N C Y 3 N C Y 4 N C Y 5 N C Y 6 N C N 7 N N Y 8 N N Y 9 N N Y 10 N N N 11 N N N 12 N P N 13 N O N 14 N O N 15 N O N 16 N C N 17 R C N 18 N O N 19 R C N 20 N C N 21 S C N 22 N O N 23 N O N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N O N 40 N P N 41 N O N 42 N O N 43 N O N 44 N C N 45 R C N 46 N O N 47 S C N 48 N O N 49 N C N 50 R C N 51 N N N 52 N C N 53 N O N 54 N N N 55 N C N 56 N N N 57 N C N 58 N C N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N O N 74 N P N 75 N O N 76 N O N 77 N O N 78 N C N 79 R C N 80 N O N 81 S C N 82 N O N 83 N C N 84 R C Y 85 N N Y 86 N C Y 87 N N Y 88 N C N 89 N C N 90 N O N 91 N N N 92 N C N 93 N N N 94 N N Y 95 N C N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N O N 111 N P N 112 N O N 113 N O N 114 N O N 115 N C N 116 R C N 117 N O N 118 S C N 119 N O N 120 N C N 121 R C N 122 N N N 123 N C N 124 N O N 125 N N N 126 N C N 127 N O N 128 N C N 129 N C N 130 N C N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N O N 147 N H N 148 N H N 149 N PT N 150 N N N 151 N N N 152 N N N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N N N 163 N C N 164 N C N 165 N C N 166 N N N 167 N C N 168 N C N 169 N C N 170 N C N 171 N N N 172 N C N 173 N C N 174 N C N 175 N N N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H Y 1 N sing Y 2 N doub N 3 N sing Y 4 N doub Y 5 N doub Y 6 N sing Y 7 N sing Y 8 N sing Y 9 N sing N 10 N sing Y 11 N sing Y 12 N doub N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N doub N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N doub N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N doub N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N doub N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N doub N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing Y 99 N sing Y 100 N sing Y 101 N doub N 102 N sing Y 103 N sing N 104 N sing Y 105 N doub N 106 N doub N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N doub N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N doub N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N doub N 141 N sing N 142 N sing N 143 N sing N 144 N doub N 145 N sing N 146 N sing N 147 N doub N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing US Biochemistry BICHAW 0033 0006-2960 34 15487 15495 10.1021/bi00047a014 7492550 Crystal and molecular structure of a new Z-DNA crystal form: d[CGT(2-NH2-A)CG] and its platinated derivative. 1995 10.2210/pdb211d/pdb pdb_0000211d 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 277.00 1 DIFFRACTOMETER ENRAF-NONIUS CAD4 x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE ELLIOTT GX-21 1824.231 DNA (5'-D(*CP*GP*TP*(1AP)P*CP*(PT(NH3)3)G)-3') 1 syn polymer 246.170 PLATINUM TRIAMINE ION 1 syn non-polymer 202.340 SPERMINE 1 syn non-polymer 18.015 water 23 nat water no yes (DC)(DG)(DT)(1AP)(DC)(DG) CGTACG A polydeoxyribonucleotide n n n n n n 1.89 1.4500 34.91 VAPOR DIFFUSION, SITTING DROP VAPOR DIFFUSION, SITTING DROP WATER 1 MPD 1 SPERMINE 1 MGCL2 1 NA CACODYLATE 1 WATER 2 MPD 2 -1.926 1 19 A 1 A 6 -2.357 A_DC1:DG6_A 1 -9.116 -0.524 0.062 -0.173 -6.410 1 19 A 2 A 5 -0.546 A_DG2:DC5_A 2 -2.353 0.271 0.037 -0.217 7.511 A 3 A 4 6.436 A_DT3:1AP4_A 3 -2.345 0.006 -0.090 -0.155 -7.511 A 4 A 3 6.436 A_1AP4:DT3_A 4 -2.345 -0.006 -0.090 -0.155 6.410 1 19 A 5 A 2 -0.546 A_DC5:DG2_A 5 -2.353 -0.271 0.037 -0.217 1.926 1 19 A 6 A 1 -2.357 A_DG6:DC1_A 6 -9.116 0.524 0.062 -0.173 5.971 -11.940 A A 1 2 34.095 A A 6 5 3.605 -6.682 0.026 5.348 AA_DC1DG2:DC5DG6_AA 1 0.540 2.755 -9.886 -11.653 1.262 2.829 -42.783 A A 2 3 12.645 A A 5 4 3.180 -9.157 0.193 -1.345 AA_DG2DT3:1AP4DC5_AA 2 1.593 2.200 -41.807 2.695 0.413 6.162 -9.873 A A 3 4 37.463 A A 4 3 3.728 -6.001 0.000 5.271 AA_DT31AP4:DT31AP4_AA 3 0.000 0.000 -7.844 -11.197 0.000 2.829 -42.783 A A 4 5 12.645 A A 3 2 3.180 -9.157 -0.193 -1.345 AA_1AP4DC5:DG2DT3_AA 4 -1.593 -2.200 -41.807 2.695 -0.413 5.971 -11.940 A A 5 6 34.095 A A 2 1 3.605 -6.682 -0.026 5.348 AA_DC5DG6:DC1DG2_AA 5 -0.540 -2.755 -9.886 -11.653 -1.262 diffrn_detector chem_comp_atom chem_comp_bond database_2 struct_conn struct_conn_type struct_site repository Initial release Version format compliance Version format compliance Data collection Data collection Database references Derived calculations 1 0 1996-03-22 1 1 2008-05-22 1 2 2011-07-13 1 3 2018-04-18 1 4 2024-02-14 _diffrn_detector.detector _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn_type.id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id BNL Y NDB 1995-06-13 REL REL PTN PLATINUM TRIAMINE ION SPM SPERMINE HOH water G 6 2 PTN PTN 7 A SPM 7 3 SPM SPM 8 A HOH 8 4 HOH HOH 9 A HOH 9 4 HOH HOH 10 A HOH 10 4 HOH HOH 11 A HOH 11 4 HOH HOH 12 A HOH 12 4 HOH HOH 13 A HOH 13 4 HOH HOH 14 A HOH 14 4 HOH HOH 15 A HOH 15 4 HOH HOH 16 A HOH 16 4 HOH HOH 17 A HOH 17 4 HOH HOH 18 A HOH 18 4 HOH HOH 19 A HOH 19 4 HOH HOH 20 A HOH 20 4 HOH HOH 21 A HOH 21 4 HOH HOH 22 A HOH 22 4 HOH HOH 23 A HOH 23 4 HOH HOH 24 A HOH 24 4 HOH HOH 25 A HOH 25 4 HOH HOH 26 A HOH 26 4 HOH HOH 27 A HOH 27 4 HOH HOH 28 A HOH 28 4 HOH HOH 29 A HOH 29 4 HOH HOH 30 A HOH 30 4 HOH HOH 31 A C 1 n 1 DC 1 A G 2 n 2 DG 2 A T 3 n 3 DT 3 A +A 4 n 4 1AP 4 A C 5 n 5 DC 5 A +G 6 n 6 DG 6 A author_defined_assembly 2 dimeric A DG 6 A N7 DG 6 1_555 A PTN 7 B PT PTN 1_555 A PTN 7 B N1 PTN 1_555 87.6 A DG 6 A N7 DG 6 1_555 A PTN 7 B PT PTN 1_555 A PTN 7 B N2 PTN 1_555 91.6 A PTN 7 B N1 PTN 1_555 A PTN 7 B PT PTN 1_555 A PTN 7 B N2 PTN 1_555 179.1 A DG 6 A N7 DG 6 1_555 A PTN 7 B PT PTN 1_555 A PTN 7 B N3 PTN 1_555 156.3 A PTN 7 B N1 PTN 1_555 A PTN 7 B PT PTN 1_555 A PTN 7 B N3 PTN 1_555 89.7 A PTN 7 B N2 PTN 1_555 A PTN 7 B PT PTN 1_555 A PTN 7 B N3 PTN 1_555 91.1 A DG 6 A N7 DG 6 1_555 A PTN 7 B PT PTN 1_555 A DG 6 A C8 DG 6 1_555 22.1 A PTN 7 B N1 PTN 1_555 A PTN 7 B PT PTN 1_555 A DG 6 A C8 DG 6 1_555 99.5 A PTN 7 B N2 PTN 1_555 A PTN 7 B PT PTN 1_555 A DG 6 A C8 DG 6 1_555 79.6 A PTN 7 B N3 PTN 1_555 A PTN 7 B PT PTN 1_555 A DG 6 A C8 DG 6 1_555 169.6 A 1AP 4 2,6-DIAMINOPURINE NUCLEOTIDE A 1AP 4 DA 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 4_556 y,x,-z+1 crystal symmetry operation 0.0000000000 0.0000000000 38.9480000000 1 14.08 1.20 119.70 133.78 A A A C3' O3' P 1AP 1AP DC 4 4 5 B Y 1 7.36 1.10 110.50 117.86 A A A O3' P OP2 1AP DC DC 4 5 5 A A Y 1 A A O3' P 1AP DC 4 5 0.081 0.012 1.607 1.688 A Y 1 A A OP2 C3 DG SPM 2 8 2.15 1_555 2_444 0.17 0.17 1.600 12.000 1583 70.400 1 4.000 1.600 12.000 23 165 19 123 0 0.009 1.66 1.600 211D 2129 1741 2.000 1 refinement X-PLOR THE CRYSTAL AND MOLECULAR STRUCTURE OF A NEW Z-DNA CRYSTAL FORM: D[CGT(2-NH2-A) CG] AND ITS PLATINATED DERIVATIVE 1 N N 2 N N 3 N N 4 N N covale 1.615 both A DT 3 A O3' DT 3 1_555 A 1AP 4 A P 1AP 4 1_555 covale 1.688 one A A 1AP 4 A O3' 1AP 4 1_555 A DC 5 A P DC 5 1_555 covale 1.589 one B A 1AP 4 A O3' 1AP 4 1_555 A DC 5 A P DC 5 1_555 metalc 2.245 A DG 6 A N7 DG 6 1_555 A PTN 7 B PT PTN 1_555 metalc 3.079 A DG 6 A C8 DG 6 1_555 A PTN 7 B PT PTN 1_555 hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 A DG 6 A N1 DG 6 4_556 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 A DG 6 A O6 DG 6 4_556 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 A DG 6 A N2 DG 6 4_556 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 A DC 5 A N3 DC 5 4_556 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 A DC 5 A O2 DC 5 4_556 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 A DC 5 A N4 DC 5 4_556 hydrog DT-1AP MISPAIR A DT 3 A O2 DT 3 1_555 A 1AP 4 A N2 1AP 4 4_556 hydrog 1AP-DT MISPAIR A 1AP 4 A N2 1AP 4 1_555 A DT 3 A O2 DT 3 4_556 hydrog WATSON-CRICK A DC 5 A N3 DC 5 1_555 A DG 2 A N1 DG 2 4_556 hydrog WATSON-CRICK A DC 5 A N4 DC 5 1_555 A DG 2 A O6 DG 2 4_556 hydrog WATSON-CRICK A DC 5 A O2 DC 5 1_555 A DG 2 A N2 DG 2 4_556 hydrog WATSON-CRICK A DG 6 A N1 DG 6 1_555 A DC 1 A N3 DC 1 4_556 hydrog WATSON-CRICK A DG 6 A N2 DG 6 1_555 A DC 1 A O2 DC 1 4_556 hydrog WATSON-CRICK A DG 6 A O6 DG 6 1_555 A DC 1 A N4 DC 1 4_556 DNA Z-DNA, DOUBLE HELIX, MODIFIED, DNA 211D PDB 1 211D 1 6 211D 1 6 211D A 1 1 6 BINDING SITE FOR RESIDUE PTN A 7 A PTN 7 Software 5 BINDING SITE FOR RESIDUE SPM A 8 A SPM 8 Software 10 A DG 2 A DG 2 5 5_446 A DC 5 A DC 5 5 1_555 A DG 6 A DG 6 5 6_346 A DG 6 A DG 6 5 1_555 A SPM 8 C SPM 5 1_555 A DG 2 A DG 2 10 3_545 A DT 3 A DT 3 10 3_545 A 1AP 4 A 1AP 4 10 3_545 A DC 5 A DC 5 10 1_555 A DG 6 A DG 6 10 5_546 A PTN 7 B PTN 10 1_555 A HOH 9 D HOH 10 3_545 A HOH 12 D HOH 10 3_545 A HOH 24 D HOH 10 3_545 A HOH 31 D HOH 10 3_545 154 P 32 2 1