data_251D # _entry.id 251D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 251D pdb_0000251d 10.2210/pdb251d/pdb RCSB BDF068 ? ? WWPDB D_1000177654 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1996-06-27 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 251D _pdbx_database_status.recvd_initial_deposition_date 1996-03-01 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wahl, M.C.' 1 'Rao, S.T.' 2 'Sundaralingam, M.' 3 # _citation.id primary _citation.title 'Crystal structure of the B-DNA hexamer d(CTCGAG): model for an A-to-B transition.' _citation.journal_abbrev Biophys.J. _citation.journal_volume 70 _citation.page_first 2857 _citation.page_last 2866 _citation.year 1996 _citation.journal_id_ASTM BIOJAU _citation.country US _citation.journal_id_ISSN 0006-3495 _citation.journal_id_CSD 0030 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 8744323 _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wahl, M.C.' 1 ? primary 'Rao, S.T.' 2 ? primary 'Sundaralingam, M.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat ;DNA (5'-D(*CP*TP*CP*GP*AP*G)-3') ; 1809.217 1 ? ? ? ? 2 water nat water 18.015 32 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DT)(DC)(DG)(DA)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CTCGAG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DT n 1 3 DC n 1 4 DG n 1 5 DA n 1 6 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DT 2 2 2 DT T A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DG 6 6 6 DG G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 7 7 HOH HOH A . B 2 HOH 2 8 8 HOH HOH A . B 2 HOH 3 9 9 HOH HOH A . B 2 HOH 4 10 10 HOH HOH A . B 2 HOH 5 11 11 HOH HOH A . B 2 HOH 6 12 12 HOH HOH A . B 2 HOH 7 13 13 HOH HOH A . B 2 HOH 8 14 14 HOH HOH A . B 2 HOH 9 15 15 HOH HOH A . B 2 HOH 10 16 16 HOH HOH A . B 2 HOH 11 17 17 HOH HOH A . B 2 HOH 12 18 18 HOH HOH A . B 2 HOH 13 19 19 HOH HOH A . B 2 HOH 14 20 20 HOH HOH A . B 2 HOH 15 21 21 HOH HOH A . B 2 HOH 16 22 22 HOH HOH A . B 2 HOH 17 23 23 HOH HOH A . B 2 HOH 18 24 24 HOH HOH A . B 2 HOH 19 25 25 HOH HOH A . B 2 HOH 20 26 26 HOH HOH A . B 2 HOH 21 27 27 HOH HOH A . B 2 HOH 22 28 28 HOH HOH A . B 2 HOH 23 29 29 HOH HOH A . B 2 HOH 24 30 30 HOH HOH A . B 2 HOH 25 31 31 HOH HOH A . B 2 HOH 26 32 32 HOH HOH A . B 2 HOH 27 33 33 HOH HOH A . B 2 HOH 28 34 34 HOH HOH A . B 2 HOH 29 35 35 HOH HOH A . B 2 HOH 30 36 36 HOH HOH A . B 2 HOH 31 37 37 HOH HOH A . B 2 HOH 32 38 38 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR refinement . ? 1 XENGEN 'data reduction' 'V. 2.0' ? 2 # _cell.entry_id 251D _cell.length_a 40.140 _cell.length_b 40.140 _cell.length_c 44.470 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 251D _symmetry.space_group_name_H-M 'P 62 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 # _exptl.entry_id 251D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.86 _exptl_crystal.density_percent_sol 56.96 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277.00 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_details 'pH 7.00, VAPOR DIFFUSION, HANGING DROP, temperature 277.00K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 MGCL2 ? ? ? 1 4 1 SPERMINE_HCL ? ? ? 1 5 1 'NA CACODYLATE' ? ? ? 1 6 2 WATER ? ? ? 1 7 2 MPD ? ? ? # _diffrn.id 1 _diffrn.crystal_id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type SIEMENS _diffrn_detector.pdbx_collection_date 1994-06-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type MACSCIENCE _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 251D _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 2.000 _reflns.d_resolution_low ? _reflns.d_resolution_high ? _reflns.number_obs 1547 _reflns.number_all ? _reflns.percent_possible_obs 83.000 _reflns.pdbx_Rmerge_I_obs 0.0499000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.600 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 251D _refine.ls_number_reflns_obs 1547 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.000 _refine.ls_d_res_high 1.900 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1860000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1860000 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 120 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 32 _refine_hist.number_atoms_total 152 _refine_hist.d_res_high 1.900 _refine_hist.d_res_low 8.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.020 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 2.90 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 251D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 251D _struct.title 'SINGLE CRYSTAL AND MOLECULAR STRUCTURE OF D(CTCGAG)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 251D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'B-DNA, DOUBLE HELIX, A-DNA LIKE CONFORMATION AT TERMINI, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 251D _struct_ref.pdbx_db_accession 251D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 251D _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 6 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 251D _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 6 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_655 -x+1,-y,z -1.0000000000 0.0000000000 0.0000000000 40.1400000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 1 A DG 6 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 1 A DG 6 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 1 A DG 6 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 N3 ? ? ? 1_555 A DA 5 N1 ? ? A DT 2 A DA 5 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 2 O4 ? ? ? 1_555 A DA 5 N6 ? ? A DT 2 A DA 5 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 3 N3 ? ? ? 1_555 A DG 4 N1 ? ? A DC 3 A DG 4 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N4 ? ? ? 1_555 A DG 4 O6 ? ? A DC 3 A DG 4 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 O2 ? ? ? 1_555 A DG 4 N2 ? ? A DC 3 A DG 4 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DC 3 N3 ? ? A DG 4 A DC 3 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DC 3 O2 ? ? A DG 4 A DC 3 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DC 3 N4 ? ? A DG 4 A DC 3 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N1 ? ? ? 1_555 A DT 2 N3 ? ? A DA 5 A DT 2 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N6 ? ? ? 1_555 A DT 2 O4 ? ? A DA 5 A DT 2 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 1 N3 ? ? A DG 6 A DC 1 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 1 O2 ? ? A DG 6 A DC 1 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 1 N4 ? ? A DG 6 A DC 1 4_655 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O3'" _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 DG _pdbx_validate_rmsd_bond.auth_seq_id_1 4 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 "C3'" _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 DG _pdbx_validate_rmsd_bond.auth_seq_id_2 4 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.380 _pdbx_validate_rmsd_bond.bond_target_value 1.419 _pdbx_validate_rmsd_bond.bond_deviation -0.039 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.006 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.84 108.30 2.54 0.30 N 2 1 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 101.97 108.00 -6.03 0.70 N 3 1 C4 A DT 2 ? ? C5 A DT 2 ? ? C6 A DT 2 ? ? 121.84 118.00 3.84 0.60 N 4 1 C6 A DT 2 ? ? C5 A DT 2 ? ? C7 A DT 2 ? ? 119.20 122.90 -3.70 0.60 N 5 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 111.78 108.30 3.48 0.30 N 6 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 96.75 108.00 -11.25 0.70 N 7 1 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 122.26 118.60 3.66 0.60 N 8 1 N1 A DG 6 ? ? C6 A DG 6 ? ? O6 A DG 6 ? ? 123.52 119.90 3.61 0.60 N 9 1 C5 A DG 6 ? ? C6 A DG 6 ? ? O6 A DG 6 ? ? 123.88 128.60 -4.72 0.60 N # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id DC _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 1 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.069 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # _ndb_struct_conf_na.entry_id 251D _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 A DG 6 4_655 0.206 -0.324 0.293 -7.803 -20.796 0.068 1 A_DC1:DG6_A A 1 ? A 6 ? 19 1 1 A DT 2 1_555 A DA 5 4_655 -0.248 -0.158 0.118 -2.552 -4.328 -1.645 2 A_DT2:DA5_A A 2 ? A 5 ? 20 1 1 A DC 3 1_555 A DG 4 4_655 0.272 -0.395 -0.206 3.588 -9.698 -4.297 3 A_DC3:DG4_A A 3 ? A 4 ? 19 1 1 A DG 4 1_555 A DC 3 4_655 -0.272 -0.395 -0.206 -3.588 -9.698 -4.297 4 A_DG4:DC3_A A 4 ? A 3 ? 19 1 1 A DA 5 1_555 A DT 2 4_655 0.248 -0.158 0.118 2.552 -4.328 -1.645 5 A_DA5:DT2_A A 5 ? A 2 ? 20 1 1 A DG 6 1_555 A DC 1 4_655 -0.206 -0.324 0.293 7.803 -20.796 0.068 6 A_DG6:DC1_A A 6 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 A DG 6 4_655 A DT 2 1_555 A DA 5 4_655 -0.580 -0.352 3.211 1.899 5.966 33.430 -1.524 1.285 3.067 10.259 -3.266 33.995 1 AA_DC1DT2:DA5DG6_AA A 1 ? A 6 ? A 2 ? A 5 ? 1 A DT 2 1_555 A DA 5 4_655 A DC 3 1_555 A DG 4 4_655 0.333 0.306 3.177 4.317 2.772 37.588 0.124 0.028 3.208 4.278 -6.661 37.923 2 AA_DT2DC3:DG4DA5_AA A 2 ? A 5 ? A 3 ? A 4 ? 1 A DC 3 1_555 A DG 4 4_655 A DG 4 1_555 A DC 3 4_655 0.000 1.041 3.578 0.000 1.683 35.014 1.450 0.000 3.623 2.796 0.000 35.053 3 AA_DC3DG4:DC3DG4_AA A 3 ? A 4 ? A 4 ? A 3 ? 1 A DG 4 1_555 A DC 3 4_655 A DA 5 1_555 A DT 2 4_655 -0.333 0.306 3.177 -4.317 2.772 37.588 0.124 -0.028 3.208 4.278 6.662 37.923 4 AA_DG4DA5:DT2DC3_AA A 4 ? A 3 ? A 5 ? A 2 ? 1 A DA 5 1_555 A DT 2 4_655 A DG 6 1_555 A DC 1 4_655 0.580 -0.352 3.211 -1.899 5.966 33.430 -1.524 -1.285 3.067 10.259 3.266 33.995 5 AA_DA5DG6:DC1DT2_AA A 5 ? A 2 ? A 6 ? A 1 ? # _atom_sites.entry_id 251D _atom_sites.fract_transf_matrix[1][1] 0.024913 _atom_sites.fract_transf_matrix[1][2] 0.014383 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.028767 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022487 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DC A 1 1 ? 22.329 7.047 20.446 1.00 14.46 ? 1 DC A "O5'" 1 ATOM 2 C "C5'" . DC A 1 1 ? 21.677 8.245 20.934 1.00 10.42 ? 1 DC A "C5'" 1 ATOM 3 C "C4'" . DC A 1 1 ? 21.060 8.969 19.760 1.00 11.68 ? 1 DC A "C4'" 1 ATOM 4 O "O4'" . DC A 1 1 ? 22.132 9.205 18.834 1.00 15.69 ? 1 DC A "O4'" 1 ATOM 5 C "C3'" . DC A 1 1 ? 20.134 8.113 18.982 1.00 10.16 ? 1 DC A "C3'" 1 ATOM 6 O "O3'" . DC A 1 1 ? 18.846 8.373 19.494 1.00 10.35 ? 1 DC A "O3'" 1 ATOM 7 C "C2'" . DC A 1 1 ? 20.198 8.815 17.572 1.00 8.46 ? 1 DC A "C2'" 1 ATOM 8 C "C1'" . DC A 1 1 ? 21.669 9.176 17.465 1.00 10.93 ? 1 DC A "C1'" 1 ATOM 9 N N1 . DC A 1 1 ? 22.550 8.330 16.629 1.00 11.79 ? 1 DC A N1 1 ATOM 10 C C2 . DC A 1 1 ? 22.372 8.339 15.226 1.00 11.36 ? 1 DC A C2 1 ATOM 11 O O2 . DC A 1 1 ? 21.388 8.885 14.739 1.00 11.72 ? 1 DC A O2 1 ATOM 12 N N3 . DC A 1 1 ? 23.256 7.660 14.434 1.00 9.59 ? 1 DC A N3 1 ATOM 13 C C4 . DC A 1 1 ? 24.281 6.993 15.004 1.00 11.92 ? 1 DC A C4 1 ATOM 14 N N4 . DC A 1 1 ? 25.208 6.441 14.234 1.00 13.19 ? 1 DC A N4 1 ATOM 15 C C5 . DC A 1 1 ? 24.478 6.918 16.435 1.00 10.35 ? 1 DC A C5 1 ATOM 16 C C6 . DC A 1 1 ? 23.582 7.612 17.186 1.00 10.16 ? 1 DC A C6 1 ATOM 17 P P . DT A 1 2 ? 17.686 7.361 19.308 1.00 14.50 ? 2 DT A P 1 ATOM 18 O OP1 . DT A 1 2 ? 16.564 7.854 20.105 1.00 15.30 ? 2 DT A OP1 1 ATOM 19 O OP2 . DT A 1 2 ? 18.255 6.074 19.591 1.00 11.78 ? 2 DT A OP2 1 ATOM 20 O "O5'" . DT A 1 2 ? 17.193 7.506 17.801 1.00 14.30 ? 2 DT A "O5'" 1 ATOM 21 C "C5'" . DT A 1 2 ? 16.644 8.714 17.165 1.00 12.44 ? 2 DT A "C5'" 1 ATOM 22 C "C4'" . DT A 1 2 ? 16.243 8.328 15.744 1.00 15.91 ? 2 DT A "C4'" 1 ATOM 23 O "O4'" . DT A 1 2 ? 17.365 7.788 15.010 1.00 14.20 ? 2 DT A "O4'" 1 ATOM 24 C "C3'" . DT A 1 2 ? 15.237 7.173 15.845 1.00 16.75 ? 2 DT A "C3'" 1 ATOM 25 O "O3'" . DT A 1 2 ? 14.299 7.425 14.822 1.00 18.78 ? 2 DT A "O3'" 1 ATOM 26 C "C2'" . DT A 1 2 ? 16.094 5.917 15.503 1.00 15.36 ? 2 DT A "C2'" 1 ATOM 27 C "C1'" . DT A 1 2 ? 17.138 6.465 14.575 1.00 13.72 ? 2 DT A "C1'" 1 ATOM 28 N N1 . DT A 1 2 ? 18.503 5.881 14.639 1.00 15.05 ? 2 DT A N1 1 ATOM 29 C C2 . DT A 1 2 ? 19.106 5.668 13.400 1.00 14.32 ? 2 DT A C2 1 ATOM 30 O O2 . DT A 1 2 ? 18.558 5.984 12.353 1.00 14.11 ? 2 DT A O2 1 ATOM 31 N N3 . DT A 1 2 ? 20.376 5.169 13.424 1.00 11.44 ? 2 DT A N3 1 ATOM 32 C C4 . DT A 1 2 ? 21.091 4.883 14.559 1.00 8.13 ? 2 DT A C4 1 ATOM 33 O O4 . DT A 1 2 ? 22.229 4.499 14.463 1.00 11.67 ? 2 DT A O4 1 ATOM 34 C C5 . DT A 1 2 ? 20.407 5.128 15.773 1.00 10.81 ? 2 DT A C5 1 ATOM 35 C C7 . DT A 1 2 ? 21.097 4.801 17.083 1.00 8.83 ? 2 DT A C7 1 ATOM 36 C C6 . DT A 1 2 ? 19.172 5.609 15.795 1.00 12.20 ? 2 DT A C6 1 ATOM 37 P P . DC A 1 3 ? 12.969 6.496 14.634 1.00 24.32 ? 3 DC A P 1 ATOM 38 O OP1 . DC A 1 3 ? 11.942 7.481 14.199 1.00 28.36 ? 3 DC A OP1 1 ATOM 39 O OP2 . DC A 1 3 ? 12.672 5.495 15.724 1.00 22.83 ? 3 DC A OP2 1 ATOM 40 O "O5'" . DC A 1 3 ? 13.462 5.562 13.433 1.00 27.83 ? 3 DC A "O5'" 1 ATOM 41 C "C5'" . DC A 1 3 ? 13.747 6.002 12.092 1.00 30.70 ? 3 DC A "C5'" 1 ATOM 42 C "C4'" . DC A 1 3 ? 14.148 4.850 11.213 1.00 31.28 ? 3 DC A "C4'" 1 ATOM 43 O "O4'" . DC A 1 3 ? 15.519 4.494 11.474 1.00 29.76 ? 3 DC A "O4'" 1 ATOM 44 C "C3'" . DC A 1 3 ? 13.279 3.614 11.546 1.00 31.06 ? 3 DC A "C3'" 1 ATOM 45 O "O3'" . DC A 1 3 ? 13.073 2.858 10.358 1.00 36.60 ? 3 DC A "O3'" 1 ATOM 46 C "C2'" . DC A 1 3 ? 14.198 2.797 12.425 1.00 29.77 ? 3 DC A "C2'" 1 ATOM 47 C "C1'" . DC A 1 3 ? 15.533 3.094 11.733 1.00 26.49 ? 3 DC A "C1'" 1 ATOM 48 N N1 . DC A 1 3 ? 16.665 2.710 12.556 1.00 22.48 ? 3 DC A N1 1 ATOM 49 C C2 . DC A 1 3 ? 17.884 2.492 11.898 1.00 19.85 ? 3 DC A C2 1 ATOM 50 O O2 . DC A 1 3 ? 17.994 2.562 10.699 1.00 18.64 ? 3 DC A O2 1 ATOM 51 N N3 . DC A 1 3 ? 18.957 2.158 12.623 1.00 19.02 ? 3 DC A N3 1 ATOM 52 C C4 . DC A 1 3 ? 18.844 2.046 13.960 1.00 18.50 ? 3 DC A C4 1 ATOM 53 N N4 . DC A 1 3 ? 19.919 1.728 14.657 1.00 17.59 ? 3 DC A N4 1 ATOM 54 C C5 . DC A 1 3 ? 17.599 2.259 14.647 1.00 18.86 ? 3 DC A C5 1 ATOM 55 C C6 . DC A 1 3 ? 16.539 2.596 13.895 1.00 17.52 ? 3 DC A C6 1 ATOM 56 P P . DG A 1 4 ? 11.689 2.889 9.501 1.00 36.46 ? 4 DG A P 1 ATOM 57 O OP1 . DG A 1 4 ? 11.429 4.266 8.997 1.00 38.48 ? 4 DG A OP1 1 ATOM 58 O OP2 . DG A 1 4 ? 10.677 2.111 10.259 1.00 36.37 ? 4 DG A OP2 1 ATOM 59 O "O5'" . DG A 1 4 ? 12.172 2.010 8.259 1.00 32.24 ? 4 DG A "O5'" 1 ATOM 60 C "C5'" . DG A 1 4 ? 13.208 2.466 7.401 1.00 26.94 ? 4 DG A "C5'" 1 ATOM 61 C "C4'" . DG A 1 4 ? 14.097 1.312 7.031 1.00 26.49 ? 4 DG A "C4'" 1 ATOM 62 O "O4'" . DG A 1 4 ? 15.112 1.088 7.994 1.00 21.58 ? 4 DG A "O4'" 1 ATOM 63 C "C3'" . DG A 1 4 ? 13.293 0.019 6.931 1.00 30.50 ? 4 DG A "C3'" 1 ATOM 64 O "O3'" . DG A 1 4 ? 13.994 -0.723 6.003 1.00 35.44 ? 4 DG A "O3'" 1 ATOM 65 C "C2'" . DG A 1 4 ? 13.656 -0.637 8.253 1.00 27.81 ? 4 DG A "C2'" 1 ATOM 66 C "C1'" . DG A 1 4 ? 15.115 -0.267 8.304 1.00 22.78 ? 4 DG A "C1'" 1 ATOM 67 N N9 . DG A 1 4 ? 15.522 -0.425 9.657 1.00 19.98 ? 4 DG A N9 1 ATOM 68 C C8 . DG A 1 4 ? 14.799 -0.333 10.793 1.00 20.78 ? 4 DG A C8 1 ATOM 69 N N7 . DG A 1 4 ? 15.449 -0.579 11.883 1.00 20.31 ? 4 DG A N7 1 ATOM 70 C C5 . DG A 1 4 ? 16.723 -0.888 11.388 1.00 18.99 ? 4 DG A C5 1 ATOM 71 C C6 . DG A 1 4 ? 17.883 -1.200 12.091 1.00 14.96 ? 4 DG A C6 1 ATOM 72 O O6 . DG A 1 4 ? 17.979 -1.296 13.289 1.00 13.42 ? 4 DG A O6 1 ATOM 73 N N1 . DG A 1 4 ? 18.985 -1.396 11.245 1.00 16.99 ? 4 DG A N1 1 ATOM 74 C C2 . DG A 1 4 ? 18.938 -1.282 9.864 1.00 14.47 ? 4 DG A C2 1 ATOM 75 N N2 . DG A 1 4 ? 20.049 -1.520 9.199 1.00 17.47 ? 4 DG A N2 1 ATOM 76 N N3 . DG A 1 4 ? 17.825 -0.965 9.191 1.00 17.94 ? 4 DG A N3 1 ATOM 77 C C4 . DG A 1 4 ? 16.770 -0.780 10.027 1.00 18.64 ? 4 DG A C4 1 ATOM 78 P P . DA A 1 5 ? 13.341 -1.430 4.793 1.00 30.52 ? 5 DA A P 1 ATOM 79 O OP1 . DA A 1 5 ? 13.371 -0.423 3.732 1.00 37.36 ? 5 DA A OP1 1 ATOM 80 O OP2 . DA A 1 5 ? 12.137 -2.179 5.228 1.00 32.81 ? 5 DA A OP2 1 ATOM 81 O "O5'" . DA A 1 5 ? 14.504 -2.454 4.622 1.00 25.62 ? 5 DA A "O5'" 1 ATOM 82 C "C5'" . DA A 1 5 ? 15.703 -1.925 4.089 1.00 18.88 ? 5 DA A "C5'" 1 ATOM 83 C "C4'" . DA A 1 5 ? 16.739 -2.964 4.313 1.00 17.48 ? 5 DA A "C4'" 1 ATOM 84 O "O4'" . DA A 1 5 ? 16.909 -3.054 5.729 1.00 17.44 ? 5 DA A "O4'" 1 ATOM 85 C "C3'" . DA A 1 5 ? 16.291 -4.361 3.847 1.00 17.47 ? 5 DA A "C3'" 1 ATOM 86 O "O3'" . DA A 1 5 ? 17.390 -4.966 3.166 1.00 20.12 ? 5 DA A "O3'" 1 ATOM 87 C "C2'" . DA A 1 5 ? 16.080 -5.136 5.168 1.00 17.05 ? 5 DA A "C2'" 1 ATOM 88 C "C1'" . DA A 1 5 ? 17.077 -4.426 6.089 1.00 17.44 ? 5 DA A "C1'" 1 ATOM 89 N N9 . DA A 1 5 ? 16.630 -4.295 7.482 1.00 15.34 ? 5 DA A N9 1 ATOM 90 C C8 . DA A 1 5 ? 15.400 -3.903 7.918 1.00 14.55 ? 5 DA A C8 1 ATOM 91 N N7 . DA A 1 5 ? 15.268 -3.863 9.210 1.00 17.12 ? 5 DA A N7 1 ATOM 92 C C5 . DA A 1 5 ? 16.521 -4.266 9.665 1.00 16.14 ? 5 DA A C5 1 ATOM 93 C C6 . DA A 1 5 ? 17.058 -4.392 10.962 1.00 13.78 ? 5 DA A C6 1 ATOM 94 N N6 . DA A 1 5 ? 16.341 -4.082 12.066 1.00 14.97 ? 5 DA A N6 1 ATOM 95 N N1 . DA A 1 5 ? 18.364 -4.766 11.026 1.00 12.10 ? 5 DA A N1 1 ATOM 96 C C2 . DA A 1 5 ? 19.080 -4.957 9.925 1.00 10.71 ? 5 DA A C2 1 ATOM 97 N N3 . DA A 1 5 ? 18.645 -4.858 8.669 1.00 13.23 ? 5 DA A N3 1 ATOM 98 C C4 . DA A 1 5 ? 17.354 -4.510 8.605 1.00 13.99 ? 5 DA A C4 1 ATOM 99 P P . DG A 1 6 ? 17.175 -6.372 2.425 1.00 20.45 ? 6 DG A P 1 ATOM 100 O OP1 . DG A 1 6 ? 18.094 -6.294 1.310 1.00 23.35 ? 6 DG A OP1 1 ATOM 101 O OP2 . DG A 1 6 ? 15.730 -6.696 2.345 1.00 17.14 ? 6 DG A OP2 1 ATOM 102 O "O5'" . DG A 1 6 ? 17.809 -7.349 3.481 1.00 18.25 ? 6 DG A "O5'" 1 ATOM 103 C "C5'" . DG A 1 6 ? 19.228 -7.359 3.784 1.00 15.99 ? 6 DG A "C5'" 1 ATOM 104 C "C4'" . DG A 1 6 ? 19.559 -8.198 5.025 1.00 14.51 ? 6 DG A "C4'" 1 ATOM 105 O "O4'" . DG A 1 6 ? 18.865 -7.603 6.074 1.00 13.71 ? 6 DG A "O4'" 1 ATOM 106 C "C3'" . DG A 1 6 ? 18.927 -9.596 4.945 1.00 12.96 ? 6 DG A "C3'" 1 ATOM 107 O "O3'" . DG A 1 6 ? 19.878 -10.486 4.415 1.00 16.48 ? 6 DG A "O3'" 1 ATOM 108 C "C2'" . DG A 1 6 ? 18.647 -9.965 6.400 1.00 11.45 ? 6 DG A "C2'" 1 ATOM 109 C "C1'" . DG A 1 6 ? 18.786 -8.607 7.075 1.00 12.84 ? 6 DG A "C1'" 1 ATOM 110 N N9 . DG A 1 6 ? 17.647 -8.250 7.882 1.00 12.01 ? 6 DG A N9 1 ATOM 111 C C8 . DG A 1 6 ? 16.382 -7.955 7.518 1.00 9.52 ? 6 DG A C8 1 ATOM 112 N N7 . DG A 1 6 ? 15.625 -7.686 8.504 1.00 10.60 ? 6 DG A N7 1 ATOM 113 C C5 . DG A 1 6 ? 16.457 -7.802 9.614 1.00 11.14 ? 6 DG A C5 1 ATOM 114 C C6 . DG A 1 6 ? 16.175 -7.644 10.964 1.00 11.97 ? 6 DG A C6 1 ATOM 115 O O6 . DG A 1 6 ? 15.079 -7.319 11.398 1.00 13.78 ? 6 DG A O6 1 ATOM 116 N N1 . DG A 1 6 ? 17.298 -7.860 11.778 1.00 10.37 ? 6 DG A N1 1 ATOM 117 C C2 . DG A 1 6 ? 18.536 -8.229 11.321 1.00 13.30 ? 6 DG A C2 1 ATOM 118 N N2 . DG A 1 6 ? 19.523 -8.418 12.188 1.00 14.31 ? 6 DG A N2 1 ATOM 119 N N3 . DG A 1 6 ? 18.812 -8.384 10.022 1.00 13.02 ? 6 DG A N3 1 ATOM 120 C C4 . DG A 1 6 ? 17.706 -8.165 9.244 1.00 12.22 ? 6 DG A C4 1 HETATM 121 O O . HOH B 2 . ? 17.521 3.791 18.283 1.00 31.08 ? 7 HOH A O 1 HETATM 122 O O . HOH B 2 . ? 21.349 -9.851 9.264 1.00 38.62 ? 8 HOH A O 1 HETATM 123 O O . HOH B 2 . ? 13.965 7.741 19.635 1.00 26.94 ? 9 HOH A O 1 HETATM 124 O O . HOH B 2 . ? 15.988 -3.299 15.967 1.00 33.56 ? 10 HOH A O 1 HETATM 125 O O . HOH B 2 . ? 13.791 -2.679 0.606 1.00 50.35 ? 11 HOH A O 1 HETATM 126 O O . HOH B 2 . ? 24.847 3.960 18.715 1.00 43.50 ? 12 HOH A O 1 HETATM 127 O O . HOH B 2 . ? 20.362 4.875 20.929 1.00 20.64 ? 13 HOH A O 1 HETATM 128 O O . HOH B 2 . ? 22.118 2.445 19.862 1.00 52.17 ? 14 HOH A O 1 HETATM 129 O O . HOH B 2 . ? 12.423 -4.476 2.269 1.00 66.41 ? 15 HOH A O 1 HETATM 130 O O . HOH B 2 . ? 12.332 -7.436 11.063 1.00 72.22 ? 16 HOH A O 1 HETATM 131 O O . HOH B 2 . ? 15.134 3.263 16.571 1.00 82.63 ? 17 HOH A O 1 HETATM 132 O O . HOH B 2 . ? 20.917 1.108 17.620 1.00 54.44 ? 18 HOH A O 1 HETATM 133 O O . HOH B 2 . ? 20.814 -5.087 6.984 1.00 31.12 ? 19 HOH A O 1 HETATM 134 O O . HOH B 2 . ? 17.736 0.158 6.765 1.00 39.11 ? 20 HOH A O 1 HETATM 135 O O . HOH B 2 . ? 19.768 -2.127 6.332 1.00 75.14 ? 21 HOH A O 1 HETATM 136 O O . HOH B 2 . ? 17.123 3.308 8.133 1.00 57.66 ? 22 HOH A O 1 HETATM 137 O O . HOH B 2 . ? 18.512 1.287 21.177 1.00 61.81 ? 23 HOH A O 1 HETATM 138 O O . HOH B 2 . ? 13.527 5.170 18.858 1.00 57.64 ? 24 HOH A O 1 HETATM 139 O O . HOH B 2 . ? 9.209 4.680 12.934 1.00 64.65 ? 25 HOH A O 1 HETATM 140 O O . HOH B 2 . ? 17.216 7.327 9.894 1.00 54.44 ? 26 HOH A O 1 HETATM 141 O O . HOH B 2 . ? 15.464 5.330 21.756 1.00 69.35 ? 27 HOH A O 1 HETATM 142 O O . HOH B 2 . ? 20.056 -10.087 1.384 1.00 55.01 ? 28 HOH A O 1 HETATM 143 O O . HOH B 2 . ? 15.688 -6.160 -0.945 1.00 51.90 ? 29 HOH A O 1 HETATM 144 O O . HOH B 2 . ? 11.582 -0.378 10.855 1.00 67.93 ? 30 HOH A O 1 HETATM 145 O O . HOH B 2 . ? 12.757 -3.696 10.512 1.00 50.62 ? 31 HOH A O 1 HETATM 146 O O . HOH B 2 . ? 14.052 -0.866 14.385 1.00 73.81 ? 32 HOH A O 1 HETATM 147 O O . HOH B 2 . ? 17.004 -0.621 15.483 1.00 54.60 ? 33 HOH A O 1 HETATM 148 O O . HOH B 2 . ? 11.501 -3.769 7.207 1.00 82.56 ? 34 HOH A O 1 HETATM 149 O O . HOH B 2 . ? 13.066 -6.931 2.753 1.00 81.92 ? 35 HOH A O 1 HETATM 150 O O . HOH B 2 . ? 18.149 -3.358 0.303 1.00 68.09 ? 36 HOH A O 1 HETATM 151 O O . HOH B 2 . ? 12.956 -6.643 8.040 1.00 63.99 ? 37 HOH A O 1 HETATM 152 O O . HOH B 2 . ? 23.165 -10.336 2.282 1.00 58.46 ? 38 HOH A O 1 #