data_257D # _entry.id 257D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 257D pdb_0000257d 10.2210/pdb257d/pdb RCSB ADF073 ? ? WWPDB D_1000177667 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1996-04-15 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 257D _pdbx_database_status.recvd_initial_deposition_date 1996-03-31 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mooers, B.H.' 1 'Schroth, G.P.' 2 'Baxter, W.W.' 3 'Ho, P.S.' 4 # _citation.id primary _citation.title 'Alternating and non-alternating dG-dC hexanucleotides crystallize as canonical A-DNA.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 249 _citation.page_first 772 _citation.page_last 784 _citation.year 1995 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 7602589 _citation.pdbx_database_id_DOI 10.1006/jmbi.1995.0336 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mooers, B.H.' 1 ? primary 'Schroth, G.P.' 2 ? primary 'Baxter, W.W.' 3 ? primary 'Ho, P.S.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*CP*CP*GP*GP*C)-3') ; 1810.205 2 ? ? ? ? 2 water nat water 18.015 22 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DC)(DC)(DG)(DG)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GCCGGC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DC n 1 4 DG n 1 5 DG n 1 6 DC n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DG 5 5 5 DG G A . n A 1 6 DC 6 6 6 DC C A . n B 1 1 DG 1 7 7 DG G B . n B 1 2 DC 2 8 8 DC C B . n B 1 3 DC 3 9 9 DC C B . n B 1 4 DG 4 10 10 DG G B . n B 1 5 DG 5 11 11 DG G B . n B 1 6 DC 6 12 12 DC C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 13 13 HOH HOH A . C 2 HOH 2 14 14 HOH HOH A . C 2 HOH 3 17 17 HOH HOH A . C 2 HOH 4 18 18 HOH HOH A . C 2 HOH 5 19 19 HOH HOH A . C 2 HOH 6 21 21 HOH HOH A . C 2 HOH 7 22 22 HOH HOH A . C 2 HOH 8 23 23 HOH HOH A . C 2 HOH 9 24 24 HOH HOH A . C 2 HOH 10 26 26 HOH HOH A . C 2 HOH 11 28 28 HOH HOH A . C 2 HOH 12 32 32 HOH HOH A . C 2 HOH 13 34 34 HOH HOH A . D 2 HOH 1 15 15 HOH HOH B . D 2 HOH 2 16 16 HOH HOH B . D 2 HOH 3 20 20 HOH HOH B . D 2 HOH 4 25 25 HOH HOH B . D 2 HOH 5 27 27 HOH HOH B . D 2 HOH 6 29 29 HOH HOH B . D 2 HOH 7 30 30 HOH HOH B . D 2 HOH 8 31 31 HOH HOH B . D 2 HOH 9 33 33 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR refinement . ? 1 XSCANS 'data reduction' . ? 2 # _cell.entry_id 257D _cell.length_a 39.100 _cell.length_b 45.550 _cell.length_c 39.110 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 257D _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # _exptl.entry_id 257D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 48.86 _exptl_crystal.density_Matthews 2.40 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details 'ROOM TEMPERATURE' _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_details 'pH 7.00, VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 'NA CACODYLATE' ? ? ? 1 4 1 SPERMINE ? ? ? 1 5 1 MGCL2 ? ? ? 1 6 2 WATER ? ? ? 1 7 2 MPD ? ? ? # _diffrn.id 1 _diffrn.crystal_id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type 'SIEMENS P4' _diffrn_detector.pdbx_collection_date 1994-03-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'SEALED TUBE' _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 257D _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.000 _reflns.d_resolution_high 2.100 _reflns.number_obs 1344 _reflns.number_all 1677 _reflns.percent_possible_obs 80.400 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 257D _refine.ls_number_reflns_obs 929 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.000 _refine.ls_d_res_high 2.300 _refine.ls_percent_reflns_obs 78.800 _refine.ls_R_factor_obs 0.1640000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1640000 _refine.ls_R_factor_R_free 0.1610000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_redundancy_reflns_obs ? _refine.pdbx_overall_phase_error ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 257D _refine_analyze.Luzzati_coordinate_error_obs 0.25 _refine_analyze.Luzzati_sigma_a_obs 0.30 _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 240 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 22 _refine_hist.number_atoms_total 262 _refine_hist.d_res_high 2.300 _refine_hist.d_res_low 8.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.018 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 3.90 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 34.3 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.52 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 257D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 257D _struct.title 'ALTERNATING AND NON-ALTERNATING DG-DC HEXANUCLEOTIDES CRYSTALLIZE AS CANONICAL A-DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 257D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'A-DNA, DOUBLE HELIX, MODIFIED, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 257D _struct_ref.pdbx_db_accession 257D _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 257D A 1 ? 6 ? 257D 1 ? 6 ? 1 6 2 1 257D B 1 ? 6 ? 257D 7 ? 12 ? 7 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 1 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 1 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 1 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 2 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 2 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 2 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 5 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 5 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 5 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 6 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 6 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 6 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 "O5'" _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 DG _pdbx_validate_close_contact.auth_seq_id_1 4 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 28 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.19 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C3'" A DC 3 ? ? "C2'" A DC 3 ? ? 1.459 1.516 -0.057 0.008 N 2 1 "C3'" A DG 4 ? ? "C2'" A DG 4 ? ? 1.455 1.516 -0.061 0.008 N 3 1 "O4'" A DG 4 ? ? "C4'" A DG 4 ? ? 1.382 1.446 -0.064 0.010 N 4 1 "C3'" A DC 6 ? ? "C2'" A DC 6 ? ? 1.449 1.516 -0.067 0.008 N 5 1 "C3'" B DG 10 ? ? "C2'" B DG 10 ? ? 1.464 1.516 -0.052 0.008 N 6 1 "C3'" B DG 11 ? ? "C2'" B DG 11 ? ? 1.466 1.516 -0.050 0.008 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C4'" A DG 1 ? ? "C3'" A DG 1 ? ? "C2'" A DG 1 ? ? 97.70 102.20 -4.50 0.70 N 2 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 114.04 108.30 5.74 0.30 N 3 1 N7 A DG 1 ? ? C8 A DG 1 ? ? N9 A DG 1 ? ? 116.18 113.10 3.08 0.50 N 4 1 "C4'" A DC 2 ? ? "C3'" A DC 2 ? ? "C2'" A DC 2 ? ? 97.86 102.20 -4.34 0.70 N 5 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 114.00 108.30 5.70 0.30 N 6 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 113.41 108.30 5.11 0.30 N 7 1 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 122.85 118.90 3.95 0.60 N 8 1 N3 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 117.41 121.90 -4.49 0.70 N 9 1 "O4'" A DG 4 ? ? "C4'" A DG 4 ? ? "C3'" A DG 4 ? ? 101.90 104.50 -2.60 0.40 N 10 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.49 108.30 3.19 0.30 N 11 1 "O4'" A DG 5 ? ? "C4'" A DG 5 ? ? "C3'" A DG 5 ? ? 100.47 104.50 -4.03 0.40 N 12 1 "C4'" A DG 5 ? ? "C3'" A DG 5 ? ? "C2'" A DG 5 ? ? 97.94 102.20 -4.26 0.70 N 13 1 N3 A DG 5 ? ? C2 A DG 5 ? ? N2 A DG 5 ? ? 113.79 119.90 -6.11 0.70 N 14 1 "O4'" A DC 6 ? ? "C4'" A DC 6 ? ? "C3'" A DC 6 ? ? 99.34 104.50 -5.16 0.40 N 15 1 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 115.43 108.30 7.13 0.30 N 16 1 C2 A DC 6 ? ? N3 A DC 6 ? ? C4 A DC 6 ? ? 122.99 119.90 3.09 0.50 N 17 1 N1 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 124.05 118.90 5.15 0.60 N 18 1 "O4'" B DG 7 ? ? "C1'" B DG 7 ? ? N9 B DG 7 ? ? 111.79 108.30 3.49 0.30 N 19 1 N7 B DG 7 ? ? C8 B DG 7 ? ? N9 B DG 7 ? ? 116.67 113.10 3.57 0.50 N 20 1 C8 B DG 7 ? ? N9 B DG 7 ? ? C4 B DG 7 ? ? 103.67 106.40 -2.73 0.40 N 21 1 N1 B DG 7 ? ? C6 B DG 7 ? ? O6 B DG 7 ? ? 115.13 119.90 -4.77 0.60 N 22 1 "O4'" B DC 8 ? ? "C1'" B DC 8 ? ? N1 B DC 8 ? ? 111.00 108.30 2.70 0.30 N 23 1 "C4'" B DC 9 ? ? "C3'" B DC 9 ? ? "C2'" B DC 9 ? ? 96.98 102.20 -5.22 0.70 N 24 1 "O4'" B DC 9 ? ? "C1'" B DC 9 ? ? N1 B DC 9 ? ? 113.51 108.30 5.21 0.30 N 25 1 "O4'" B DG 10 ? ? "C4'" B DG 10 ? ? "C3'" B DG 10 ? ? 99.94 104.50 -4.56 0.40 N 26 1 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 112.66 108.30 4.36 0.30 N 27 1 "C4'" B DG 11 ? ? "C3'" B DG 11 ? ? "C2'" B DG 11 ? ? 97.19 102.20 -5.01 0.70 N 28 1 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 115.04 108.30 6.74 0.30 N 29 1 N1 B DG 11 ? ? C6 B DG 11 ? ? O6 B DG 11 ? ? 115.50 119.90 -4.40 0.60 N 30 1 "O4'" B DC 12 ? ? "C4'" B DC 12 ? ? "C3'" B DC 12 ? ? 101.25 104.50 -3.25 0.40 N 31 1 "O4'" B DC 12 ? ? "C1'" B DC 12 ? ? N1 B DC 12 ? ? 113.73 108.30 5.43 0.30 N 32 1 N1 B DC 12 ? ? C2 B DC 12 ? ? O2 B DC 12 ? ? 123.45 118.90 4.55 0.60 N # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id DC _pdbx_validate_planes.auth_asym_id B _pdbx_validate_planes.auth_seq_id 8 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.090 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DC OP3 O N N 1 DC P P N N 2 DC OP1 O N N 3 DC OP2 O N N 4 DC "O5'" O N N 5 DC "C5'" C N N 6 DC "C4'" C N R 7 DC "O4'" O N N 8 DC "C3'" C N S 9 DC "O3'" O N N 10 DC "C2'" C N N 11 DC "C1'" C N R 12 DC N1 N N N 13 DC C2 C N N 14 DC O2 O N N 15 DC N3 N N N 16 DC C4 C N N 17 DC N4 N N N 18 DC C5 C N N 19 DC C6 C N N 20 DC HOP3 H N N 21 DC HOP2 H N N 22 DC "H5'" H N N 23 DC "H5''" H N N 24 DC "H4'" H N N 25 DC "H3'" H N N 26 DC "HO3'" H N N 27 DC "H2'" H N N 28 DC "H2''" H N N 29 DC "H1'" H N N 30 DC H41 H N N 31 DC H42 H N N 32 DC H5 H N N 33 DC H6 H N N 34 DG OP3 O N N 35 DG P P N N 36 DG OP1 O N N 37 DG OP2 O N N 38 DG "O5'" O N N 39 DG "C5'" C N N 40 DG "C4'" C N R 41 DG "O4'" O N N 42 DG "C3'" C N S 43 DG "O3'" O N N 44 DG "C2'" C N N 45 DG "C1'" C N R 46 DG N9 N Y N 47 DG C8 C Y N 48 DG N7 N Y N 49 DG C5 C Y N 50 DG C6 C N N 51 DG O6 O N N 52 DG N1 N N N 53 DG C2 C N N 54 DG N2 N N N 55 DG N3 N N N 56 DG C4 C Y N 57 DG HOP3 H N N 58 DG HOP2 H N N 59 DG "H5'" H N N 60 DG "H5''" H N N 61 DG "H4'" H N N 62 DG "H3'" H N N 63 DG "HO3'" H N N 64 DG "H2'" H N N 65 DG "H2''" H N N 66 DG "H1'" H N N 67 DG H8 H N N 68 DG H1 H N N 69 DG H21 H N N 70 DG H22 H N N 71 HOH O O N N 72 HOH H1 H N N 73 HOH H2 H N N 74 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DC OP3 P sing N N 1 DC OP3 HOP3 sing N N 2 DC P OP1 doub N N 3 DC P OP2 sing N N 4 DC P "O5'" sing N N 5 DC OP2 HOP2 sing N N 6 DC "O5'" "C5'" sing N N 7 DC "C5'" "C4'" sing N N 8 DC "C5'" "H5'" sing N N 9 DC "C5'" "H5''" sing N N 10 DC "C4'" "O4'" sing N N 11 DC "C4'" "C3'" sing N N 12 DC "C4'" "H4'" sing N N 13 DC "O4'" "C1'" sing N N 14 DC "C3'" "O3'" sing N N 15 DC "C3'" "C2'" sing N N 16 DC "C3'" "H3'" sing N N 17 DC "O3'" "HO3'" sing N N 18 DC "C2'" "C1'" sing N N 19 DC "C2'" "H2'" sing N N 20 DC "C2'" "H2''" sing N N 21 DC "C1'" N1 sing N N 22 DC "C1'" "H1'" sing N N 23 DC N1 C2 sing N N 24 DC N1 C6 sing N N 25 DC C2 O2 doub N N 26 DC C2 N3 sing N N 27 DC N3 C4 doub N N 28 DC C4 N4 sing N N 29 DC C4 C5 sing N N 30 DC N4 H41 sing N N 31 DC N4 H42 sing N N 32 DC C5 C6 doub N N 33 DC C5 H5 sing N N 34 DC C6 H6 sing N N 35 DG OP3 P sing N N 36 DG OP3 HOP3 sing N N 37 DG P OP1 doub N N 38 DG P OP2 sing N N 39 DG P "O5'" sing N N 40 DG OP2 HOP2 sing N N 41 DG "O5'" "C5'" sing N N 42 DG "C5'" "C4'" sing N N 43 DG "C5'" "H5'" sing N N 44 DG "C5'" "H5''" sing N N 45 DG "C4'" "O4'" sing N N 46 DG "C4'" "C3'" sing N N 47 DG "C4'" "H4'" sing N N 48 DG "O4'" "C1'" sing N N 49 DG "C3'" "O3'" sing N N 50 DG "C3'" "C2'" sing N N 51 DG "C3'" "H3'" sing N N 52 DG "O3'" "HO3'" sing N N 53 DG "C2'" "C1'" sing N N 54 DG "C2'" "H2'" sing N N 55 DG "C2'" "H2''" sing N N 56 DG "C1'" N9 sing N N 57 DG "C1'" "H1'" sing N N 58 DG N9 C8 sing Y N 59 DG N9 C4 sing Y N 60 DG C8 N7 doub Y N 61 DG C8 H8 sing N N 62 DG N7 C5 sing Y N 63 DG C5 C6 sing N N 64 DG C5 C4 doub Y N 65 DG C6 O6 doub N N 66 DG C6 N1 sing N N 67 DG N1 C2 sing N N 68 DG N1 H1 sing N N 69 DG C2 N2 sing N N 70 DG C2 N3 doub N N 71 DG N2 H21 sing N N 72 DG N2 H22 sing N N 73 DG N3 C4 sing N N 74 HOH O H1 sing N N 75 HOH O H2 sing N N 76 # _ndb_struct_conf_na.entry_id 257D _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 6 1_555 -0.619 0.077 -0.112 -3.741 1.402 3.415 1 A_DG1:DC12_B A 1 ? B 12 ? 19 1 1 A DC 2 1_555 B DG 5 1_555 0.096 -0.254 0.135 6.596 -13.242 -2.799 2 A_DC2:DG11_B A 2 ? B 11 ? 19 1 1 A DC 3 1_555 B DG 4 1_555 0.851 -0.133 0.406 6.129 -20.695 4.544 3 A_DC3:DG10_B A 3 ? B 10 ? 19 1 1 A DG 4 1_555 B DC 3 1_555 -0.141 0.048 -0.366 -7.434 -10.612 6.220 4 A_DG4:DC9_B A 4 ? B 9 ? 19 1 1 A DG 5 1_555 B DC 2 1_555 -0.522 -0.034 -0.128 -10.474 -12.508 4.743 5 A_DG5:DC8_B A 5 ? B 8 ? 19 1 1 A DC 6 1_555 B DG 1 1_555 0.619 -0.307 -0.078 3.681 0.982 -4.863 6 A_DC6:DG7_B A 6 ? B 7 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 6 1_555 A DC 2 1_555 B DG 5 1_555 -0.654 -1.480 3.147 -1.701 5.787 35.416 -3.172 0.835 2.904 9.429 2.771 35.910 1 AA_DG1DC2:DG11DC12_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 A DC 2 1_555 B DG 5 1_555 A DC 3 1_555 B DG 4 1_555 0.398 -1.722 3.352 -0.817 8.770 32.511 -4.344 -0.815 2.795 15.317 1.427 33.651 2 AA_DC2DC3:DG10DG11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A DC 3 1_555 B DG 4 1_555 A DG 4 1_555 B DC 3 1_555 -0.017 -1.719 3.512 3.690 16.858 24.897 -6.452 0.723 1.958 34.330 -7.516 30.215 3 AA_DC3DG4:DC9DG10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A DG 4 1_555 B DC 3 1_555 A DG 5 1_555 B DC 2 1_555 0.010 -1.643 3.390 -0.669 11.767 25.663 -5.930 -0.166 2.416 24.888 1.416 28.199 4 AA_DG4DG5:DC8DC9_BB A 4 ? B 9 ? A 5 ? B 8 ? 1 A DG 5 1_555 B DC 2 1_555 A DC 6 1_555 B DG 1 1_555 0.044 -1.219 2.985 -0.767 2.517 37.279 -2.202 -0.159 2.898 3.932 1.198 37.369 5 AA_DG5DC6:DG7DC8_BB A 5 ? B 8 ? A 6 ? B 7 ? # _atom_sites.entry_id 257D _atom_sites.fract_transf_matrix[1][1] 0.025575 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021954 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025569 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DG A 1 1 ? 21.792 12.500 3.537 1.00 31.64 ? 1 DG A "O5'" 1 ATOM 2 C "C5'" . DG A 1 1 ? 22.682 13.476 2.978 1.00 24.29 ? 1 DG A "C5'" 1 ATOM 3 C "C4'" . DG A 1 1 ? 22.533 13.651 1.467 1.00 19.62 ? 1 DG A "C4'" 1 ATOM 4 O "O4'" . DG A 1 1 ? 22.772 12.419 0.798 1.00 19.82 ? 1 DG A "O4'" 1 ATOM 5 C "C3'" . DG A 1 1 ? 21.197 14.142 1.000 1.00 18.01 ? 1 DG A "C3'" 1 ATOM 6 O "O3'" . DG A 1 1 ? 21.229 15.561 0.914 1.00 21.74 ? 1 DG A "O3'" 1 ATOM 7 C "C2'" . DG A 1 1 ? 21.285 13.658 -0.398 1.00 21.16 ? 1 DG A "C2'" 1 ATOM 8 C "C1'" . DG A 1 1 ? 21.918 12.304 -0.335 1.00 19.11 ? 1 DG A "C1'" 1 ATOM 9 N N9 . DG A 1 1 ? 20.923 11.239 -0.225 1.00 18.27 ? 1 DG A N9 1 ATOM 10 C C8 . DG A 1 1 ? 20.584 10.519 0.876 1.00 21.99 ? 1 DG A C8 1 ATOM 11 N N7 . DG A 1 1 ? 19.642 9.626 0.714 1.00 22.92 ? 1 DG A N7 1 ATOM 12 C C5 . DG A 1 1 ? 19.323 9.766 -0.628 1.00 17.35 ? 1 DG A C5 1 ATOM 13 C C6 . DG A 1 1 ? 18.353 9.074 -1.376 1.00 15.43 ? 1 DG A C6 1 ATOM 14 O O6 . DG A 1 1 ? 17.559 8.210 -1.018 1.00 10.90 ? 1 DG A O6 1 ATOM 15 N N1 . DG A 1 1 ? 18.361 9.517 -2.696 1.00 18.37 ? 1 DG A N1 1 ATOM 16 C C2 . DG A 1 1 ? 19.178 10.492 -3.190 1.00 16.23 ? 1 DG A C2 1 ATOM 17 N N2 . DG A 1 1 ? 19.043 10.779 -4.471 1.00 9.48 ? 1 DG A N2 1 ATOM 18 N N3 . DG A 1 1 ? 20.093 11.170 -2.490 1.00 16.23 ? 1 DG A N3 1 ATOM 19 C C4 . DG A 1 1 ? 20.103 10.746 -1.219 1.00 16.41 ? 1 DG A C4 1 ATOM 20 P P . DC A 1 2 ? 19.941 16.527 0.714 1.00 25.42 ? 2 DC A P 1 ATOM 21 O OP1 . DC A 1 2 ? 20.416 17.911 0.774 1.00 25.56 ? 2 DC A OP1 1 ATOM 22 O OP2 . DC A 1 2 ? 18.846 16.040 1.595 1.00 26.20 ? 2 DC A OP2 1 ATOM 23 O "O5'" . DC A 1 2 ? 19.443 16.315 -0.763 1.00 20.99 ? 2 DC A "O5'" 1 ATOM 24 C "C5'" . DC A 1 2 ? 20.057 17.022 -1.840 1.00 16.49 ? 2 DC A "C5'" 1 ATOM 25 C "C4'" . DC A 1 2 ? 19.286 16.697 -3.059 1.00 16.89 ? 2 DC A "C4'" 1 ATOM 26 O "O4'" . DC A 1 2 ? 19.366 15.302 -3.244 1.00 17.78 ? 2 DC A "O4'" 1 ATOM 27 C "C3'" . DC A 1 2 ? 17.794 16.967 -2.919 1.00 17.27 ? 2 DC A "C3'" 1 ATOM 28 O "O3'" . DC A 1 2 ? 17.501 18.329 -3.190 1.00 22.90 ? 2 DC A "O3'" 1 ATOM 29 C "C2'" . DC A 1 2 ? 17.326 16.100 -4.028 1.00 15.99 ? 2 DC A "C2'" 1 ATOM 30 C "C1'" . DC A 1 2 ? 18.103 14.843 -3.777 1.00 14.55 ? 2 DC A "C1'" 1 ATOM 31 N N1 . DC A 1 2 ? 17.419 13.839 -2.927 1.00 12.04 ? 2 DC A N1 1 ATOM 32 C C2 . DC A 1 2 ? 16.514 12.989 -3.509 1.00 13.06 ? 2 DC A C2 1 ATOM 33 O O2 . DC A 1 2 ? 16.251 13.064 -4.711 1.00 10.93 ? 2 DC A O2 1 ATOM 34 N N3 . DC A 1 2 ? 15.884 12.063 -2.729 1.00 9.42 ? 2 DC A N3 1 ATOM 35 C C4 . DC A 1 2 ? 16.146 11.972 -1.407 1.00 10.45 ? 2 DC A C4 1 ATOM 36 N N4 . DC A 1 2 ? 15.575 10.986 -0.679 1.00 3.34 ? 2 DC A N4 1 ATOM 37 C C5 . DC A 1 2 ? 17.067 12.886 -0.780 1.00 12.58 ? 2 DC A C5 1 ATOM 38 C C6 . DC A 1 2 ? 17.664 13.777 -1.593 1.00 11.02 ? 2 DC A C6 1 ATOM 39 P P . DC A 1 3 ? 16.230 19.090 -2.571 1.00 25.15 ? 3 DC A P 1 ATOM 40 O OP1 . DC A 1 3 ? 16.304 20.500 -3.014 1.00 22.24 ? 3 DC A OP1 1 ATOM 41 O OP2 . DC A 1 3 ? 16.219 18.763 -1.123 1.00 28.89 ? 3 DC A OP2 1 ATOM 42 O "O5'" . DC A 1 3 ? 14.940 18.383 -3.245 1.00 22.52 ? 3 DC A "O5'" 1 ATOM 43 C "C5'" . DC A 1 3 ? 14.682 18.545 -4.670 1.00 23.39 ? 3 DC A "C5'" 1 ATOM 44 C "C4'" . DC A 1 3 ? 13.688 17.536 -5.275 1.00 20.31 ? 3 DC A "C4'" 1 ATOM 45 O "O4'" . DC A 1 3 ? 14.103 16.195 -5.041 1.00 21.42 ? 3 DC A "O4'" 1 ATOM 46 C "C3'" . DC A 1 3 ? 12.363 17.591 -4.636 1.00 18.05 ? 3 DC A "C3'" 1 ATOM 47 O "O3'" . DC A 1 3 ? 11.598 18.664 -5.141 1.00 19.90 ? 3 DC A "O3'" 1 ATOM 48 C "C2'" . DC A 1 3 ? 11.801 16.317 -5.070 1.00 17.49 ? 3 DC A "C2'" 1 ATOM 49 C "C1'" . DC A 1 3 ? 12.949 15.401 -4.784 1.00 19.08 ? 3 DC A "C1'" 1 ATOM 50 N N1 . DC A 1 3 ? 12.945 14.784 -3.428 1.00 16.63 ? 3 DC A N1 1 ATOM 51 C C2 . DC A 1 3 ? 12.173 13.673 -3.207 1.00 16.90 ? 3 DC A C2 1 ATOM 52 O O2 . DC A 1 3 ? 11.438 13.190 -4.066 1.00 20.03 ? 3 DC A O2 1 ATOM 53 N N3 . DC A 1 3 ? 12.197 13.074 -2.007 1.00 15.72 ? 3 DC A N3 1 ATOM 54 C C4 . DC A 1 3 ? 12.933 13.570 -1.028 1.00 18.99 ? 3 DC A C4 1 ATOM 55 N N4 . DC A 1 3 ? 12.830 12.978 0.161 1.00 23.18 ? 3 DC A N4 1 ATOM 56 C C5 . DC A 1 3 ? 13.751 14.721 -1.219 1.00 18.94 ? 3 DC A C5 1 ATOM 57 C C6 . DC A 1 3 ? 13.718 15.288 -2.436 1.00 17.69 ? 3 DC A C6 1 ATOM 58 P P . DG A 1 4 ? 10.610 19.440 -4.105 1.00 21.15 ? 4 DG A P 1 ATOM 59 O OP1 . DG A 1 4 ? 10.081 20.635 -4.787 1.00 24.66 ? 4 DG A OP1 1 ATOM 60 O OP2 . DG A 1 4 ? 11.276 19.573 -2.796 1.00 15.49 ? 4 DG A OP2 1 ATOM 61 O "O5'" . DG A 1 4 ? 9.461 18.343 -3.992 1.00 19.13 ? 4 DG A "O5'" 1 ATOM 62 C "C5'" . DG A 1 4 ? 8.517 18.214 -5.077 1.00 14.51 ? 4 DG A "C5'" 1 ATOM 63 C "C4'" . DG A 1 4 ? 7.496 17.186 -4.719 1.00 11.41 ? 4 DG A "C4'" 1 ATOM 64 O "O4'" . DG A 1 4 ? 8.255 16.057 -4.474 1.00 13.03 ? 4 DG A "O4'" 1 ATOM 65 C "C3'" . DG A 1 4 ? 6.808 17.401 -3.373 1.00 11.98 ? 4 DG A "C3'" 1 ATOM 66 O "O3'" . DG A 1 4 ? 5.654 18.206 -3.500 1.00 14.01 ? 4 DG A "O3'" 1 ATOM 67 C "C2'" . DG A 1 4 ? 6.322 16.054 -3.115 1.00 14.25 ? 4 DG A "C2'" 1 ATOM 68 C "C1'" . DG A 1 4 ? 7.538 15.295 -3.519 1.00 13.22 ? 4 DG A "C1'" 1 ATOM 69 N N9 . DG A 1 4 ? 8.334 15.032 -2.349 1.00 10.77 ? 4 DG A N9 1 ATOM 70 C C8 . DG A 1 4 ? 9.476 15.625 -1.909 1.00 11.30 ? 4 DG A C8 1 ATOM 71 N N7 . DG A 1 4 ? 9.984 15.039 -0.847 1.00 11.85 ? 4 DG A N7 1 ATOM 72 C C5 . DG A 1 4 ? 9.070 13.998 -0.583 1.00 8.25 ? 4 DG A C5 1 ATOM 73 C C6 . DG A 1 4 ? 9.053 12.981 0.419 1.00 10.11 ? 4 DG A C6 1 ATOM 74 O O6 . DG A 1 4 ? 9.855 12.731 1.316 1.00 15.45 ? 4 DG A O6 1 ATOM 75 N N1 . DG A 1 4 ? 7.937 12.144 0.300 1.00 3.27 ? 4 DG A N1 1 ATOM 76 C C2 . DG A 1 4 ? 6.999 12.261 -0.652 1.00 3.16 ? 4 DG A C2 1 ATOM 77 N N2 . DG A 1 4 ? 6.025 11.403 -0.630 1.00 3.14 ? 4 DG A N2 1 ATOM 78 N N3 . DG A 1 4 ? 6.980 13.161 -1.616 1.00 4.09 ? 4 DG A N3 1 ATOM 79 C C4 . DG A 1 4 ? 8.051 13.995 -1.502 1.00 7.59 ? 4 DG A C4 1 ATOM 80 P P . DG A 1 5 ? 5.020 19.004 -2.292 1.00 16.36 ? 5 DG A P 1 ATOM 81 O OP1 . DG A 1 5 ? 3.925 19.794 -2.898 1.00 14.36 ? 5 DG A OP1 1 ATOM 82 O OP2 . DG A 1 5 ? 6.083 19.685 -1.496 1.00 9.52 ? 5 DG A OP2 1 ATOM 83 O "O5'" . DG A 1 5 ? 4.367 17.813 -1.427 1.00 10.97 ? 5 DG A "O5'" 1 ATOM 84 C "C5'" . DG A 1 5 ? 3.066 17.343 -1.810 1.00 10.01 ? 5 DG A "C5'" 1 ATOM 85 C "C4'" . DG A 1 5 ? 2.634 16.222 -0.939 1.00 7.39 ? 5 DG A "C4'" 1 ATOM 86 O "O4'" . DG A 1 5 ? 3.793 15.408 -0.864 1.00 10.04 ? 5 DG A "O4'" 1 ATOM 87 C "C3'" . DG A 1 5 ? 2.431 16.540 0.509 1.00 4.74 ? 5 DG A "C3'" 1 ATOM 88 O "O3'" . DG A 1 5 ? 1.157 17.089 0.786 1.00 6.56 ? 5 DG A "O3'" 1 ATOM 89 C "C2'" . DG A 1 5 ? 2.471 15.150 1.032 1.00 2.31 ? 5 DG A "C2'" 1 ATOM 90 C "C1'" . DG A 1 5 ? 3.648 14.646 0.297 1.00 3.07 ? 5 DG A "C1'" 1 ATOM 91 N N9 . DG A 1 5 ? 4.825 14.856 1.072 1.00 3.47 ? 5 DG A N9 1 ATOM 92 C C8 . DG A 1 5 ? 5.906 15.690 0.918 1.00 8.13 ? 5 DG A C8 1 ATOM 93 N N7 . DG A 1 5 ? 6.883 15.453 1.776 1.00 8.41 ? 5 DG A N7 1 ATOM 94 C C5 . DG A 1 5 ? 6.370 14.378 2.541 1.00 7.18 ? 5 DG A C5 1 ATOM 95 C C6 . DG A 1 5 ? 6.925 13.610 3.625 1.00 9.46 ? 5 DG A C6 1 ATOM 96 O O6 . DG A 1 5 ? 7.986 13.707 4.228 1.00 12.70 ? 5 DG A O6 1 ATOM 97 N N1 . DG A 1 5 ? 6.059 12.611 4.039 1.00 5.17 ? 5 DG A N1 1 ATOM 98 C C2 . DG A 1 5 ? 4.820 12.399 3.517 1.00 6.99 ? 5 DG A C2 1 ATOM 99 N N2 . DG A 1 5 ? 4.094 11.414 3.968 1.00 4.75 ? 5 DG A N2 1 ATOM 100 N N3 . DG A 1 5 ? 4.249 13.079 2.563 1.00 7.94 ? 5 DG A N3 1 ATOM 101 C C4 . DG A 1 5 ? 5.104 14.041 2.117 1.00 6.28 ? 5 DG A C4 1 ATOM 102 P P . DC A 1 6 ? 0.975 18.356 1.814 1.00 14.36 ? 6 DC A P 1 ATOM 103 O OP1 . DC A 1 6 ? -0.193 19.158 1.344 1.00 9.88 ? 6 DC A OP1 1 ATOM 104 O OP2 . DC A 1 6 ? 2.259 19.052 2.094 1.00 15.11 ? 6 DC A OP2 1 ATOM 105 O "O5'" . DC A 1 6 ? 0.687 17.593 3.200 1.00 11.84 ? 6 DC A "O5'" 1 ATOM 106 C "C5'" . DC A 1 6 ? -0.482 16.877 3.594 1.00 13.98 ? 6 DC A "C5'" 1 ATOM 107 C "C4'" . DC A 1 6 ? -0.103 15.871 4.657 1.00 14.43 ? 6 DC A "C4'" 1 ATOM 108 O "O4'" . DC A 1 6 ? 1.103 15.266 4.192 1.00 15.49 ? 6 DC A "O4'" 1 ATOM 109 C "C3'" . DC A 1 6 ? 0.367 16.366 5.968 1.00 12.15 ? 6 DC A "C3'" 1 ATOM 110 O "O3'" . DC A 1 6 ? -0.678 16.687 6.846 1.00 21.52 ? 6 DC A "O3'" 1 ATOM 111 C "C2'" . DC A 1 6 ? 0.998 15.167 6.481 1.00 11.86 ? 6 DC A "C2'" 1 ATOM 112 C "C1'" . DC A 1 6 ? 1.790 14.735 5.311 1.00 8.41 ? 6 DC A "C1'" 1 ATOM 113 N N1 . DC A 1 6 ? 3.175 15.107 5.419 1.00 6.67 ? 6 DC A N1 1 ATOM 114 C C2 . DC A 1 6 ? 3.974 14.413 6.295 1.00 5.52 ? 6 DC A C2 1 ATOM 115 O O2 . DC A 1 6 ? 3.579 13.465 6.996 1.00 5.85 ? 6 DC A O2 1 ATOM 116 N N3 . DC A 1 6 ? 5.261 14.776 6.358 1.00 5.68 ? 6 DC A N3 1 ATOM 117 C C4 . DC A 1 6 ? 5.765 15.735 5.631 1.00 7.78 ? 6 DC A C4 1 ATOM 118 N N4 . DC A 1 6 ? 7.083 15.913 5.677 1.00 8.35 ? 6 DC A N4 1 ATOM 119 C C5 . DC A 1 6 ? 4.961 16.495 4.766 1.00 7.43 ? 6 DC A C5 1 ATOM 120 C C6 . DC A 1 6 ? 3.672 16.120 4.685 1.00 9.69 ? 6 DC A C6 1 ATOM 121 O "O5'" . DG B 1 1 ? 12.591 9.117 11.223 1.00 30.15 ? 7 DG B "O5'" 1 ATOM 122 C "C5'" . DG B 1 1 ? 12.096 8.549 12.439 1.00 20.13 ? 7 DG B "C5'" 1 ATOM 123 C "C4'" . DG B 1 1 ? 10.610 8.767 12.559 1.00 16.39 ? 7 DG B "C4'" 1 ATOM 124 O "O4'" . DG B 1 1 ? 10.251 10.140 12.714 1.00 18.57 ? 7 DG B "O4'" 1 ATOM 125 C "C3'" . DG B 1 1 ? 9.871 8.272 11.342 1.00 17.52 ? 7 DG B "C3'" 1 ATOM 126 O "O3'" . DG B 1 1 ? 9.728 6.860 11.395 1.00 17.58 ? 7 DG B "O3'" 1 ATOM 127 C "C2'" . DG B 1 1 ? 8.548 8.957 11.569 1.00 19.24 ? 7 DG B "C2'" 1 ATOM 128 C "C1'" . DG B 1 1 ? 8.964 10.359 12.041 1.00 15.86 ? 7 DG B "C1'" 1 ATOM 129 N N9 . DG B 1 1 ? 9.071 11.376 10.964 1.00 9.00 ? 7 DG B N9 1 ATOM 130 C C8 . DG B 1 1 ? 10.136 12.145 10.663 1.00 8.89 ? 7 DG B C8 1 ATOM 131 N N7 . DG B 1 1 ? 9.962 13.049 9.747 1.00 10.96 ? 7 DG B N7 1 ATOM 132 C C5 . DG B 1 1 ? 8.647 12.861 9.383 1.00 9.94 ? 7 DG B C5 1 ATOM 133 C C6 . DG B 1 1 ? 7.847 13.536 8.428 1.00 11.45 ? 7 DG B C6 1 ATOM 134 O O6 . DG B 1 1 ? 8.099 14.450 7.666 1.00 14.48 ? 7 DG B O6 1 ATOM 135 N N1 . DG B 1 1 ? 6.576 13.076 8.373 1.00 12.43 ? 7 DG B N1 1 ATOM 136 C C2 . DG B 1 1 ? 6.105 12.090 9.152 1.00 15.69 ? 7 DG B C2 1 ATOM 137 N N2 . DG B 1 1 ? 4.817 11.878 9.072 1.00 16.27 ? 7 DG B N2 1 ATOM 138 N N3 . DG B 1 1 ? 6.820 11.382 10.037 1.00 17.88 ? 7 DG B N3 1 ATOM 139 C C4 . DG B 1 1 ? 8.084 11.835 10.109 1.00 11.47 ? 7 DG B C4 1 ATOM 140 P P . DC B 1 2 ? 9.901 5.989 10.071 1.00 16.44 ? 8 DC B P 1 ATOM 141 O OP1 . DC B 1 2 ? 9.986 4.584 10.468 1.00 17.17 ? 8 DC B OP1 1 ATOM 142 O OP2 . DC B 1 2 ? 10.938 6.630 9.217 1.00 17.17 ? 8 DC B OP2 1 ATOM 143 O "O5'" . DC B 1 2 ? 8.500 6.215 9.386 1.00 14.57 ? 8 DC B "O5'" 1 ATOM 144 C "C5'" . DC B 1 2 ? 7.322 5.844 10.103 1.00 10.73 ? 8 DC B "C5'" 1 ATOM 145 C "C4'" . DC B 1 2 ? 6.096 6.365 9.386 1.00 13.19 ? 8 DC B "C4'" 1 ATOM 146 O "O4'" . DC B 1 2 ? 6.031 7.787 9.381 1.00 15.15 ? 8 DC B "O4'" 1 ATOM 147 C "C3'" . DC B 1 2 ? 6.165 6.009 7.952 1.00 11.73 ? 8 DC B "C3'" 1 ATOM 148 O "O3'" . DC B 1 2 ? 5.730 4.692 7.769 1.00 19.05 ? 8 DC B "O3'" 1 ATOM 149 C "C2'" . DC B 1 2 ? 5.240 6.990 7.355 1.00 11.32 ? 8 DC B "C2'" 1 ATOM 150 C "C1'" . DC B 1 2 ? 5.655 8.205 8.082 1.00 11.74 ? 8 DC B "C1'" 1 ATOM 151 N N1 . DC B 1 2 ? 6.717 8.994 7.457 1.00 9.77 ? 8 DC B N1 1 ATOM 152 C C2 . DC B 1 2 ? 6.339 9.961 6.614 1.00 11.78 ? 8 DC B C2 1 ATOM 153 O O2 . DC B 1 2 ? 5.169 10.062 6.248 1.00 13.52 ? 8 DC B O2 1 ATOM 154 N N3 . DC B 1 2 ? 7.261 10.832 6.170 1.00 7.64 ? 8 DC B N3 1 ATOM 155 C C4 . DC B 1 2 ? 8.518 10.739 6.537 1.00 10.15 ? 8 DC B C4 1 ATOM 156 N N4 . DC B 1 2 ? 9.362 11.714 6.169 1.00 14.60 ? 8 DC B N4 1 ATOM 157 C C5 . DC B 1 2 ? 8.959 9.670 7.341 1.00 9.63 ? 8 DC B C5 1 ATOM 158 C C6 . DC B 1 2 ? 8.010 8.843 7.786 1.00 11.22 ? 8 DC B C6 1 ATOM 159 P P . DC B 1 3 ? 6.342 3.813 6.592 1.00 20.02 ? 9 DC B P 1 ATOM 160 O OP1 . DC B 1 3 ? 5.626 2.516 6.588 1.00 23.95 ? 9 DC B OP1 1 ATOM 161 O OP2 . DC B 1 3 ? 7.815 3.838 6.606 1.00 17.93 ? 9 DC B OP2 1 ATOM 162 O "O5'" . DC B 1 3 ? 5.861 4.700 5.339 1.00 23.24 ? 9 DC B "O5'" 1 ATOM 163 C "C5'" . DC B 1 3 ? 4.513 4.521 4.847 1.00 23.25 ? 9 DC B "C5'" 1 ATOM 164 C "C4'" . DC B 1 3 ? 4.225 5.409 3.648 1.00 20.82 ? 9 DC B "C4'" 1 ATOM 165 O "O4'" . DC B 1 3 ? 4.412 6.786 3.990 1.00 23.95 ? 9 DC B "O4'" 1 ATOM 166 C "C3'" . DC B 1 3 ? 5.142 5.178 2.506 1.00 17.69 ? 9 DC B "C3'" 1 ATOM 167 O "O3'" . DC B 1 3 ? 4.774 4.026 1.759 1.00 23.20 ? 9 DC B "O3'" 1 ATOM 168 C "C2'" . DC B 1 3 ? 4.795 6.399 1.747 1.00 18.53 ? 9 DC B "C2'" 1 ATOM 169 C "C1'" . DC B 1 3 ? 4.790 7.456 2.798 1.00 18.21 ? 9 DC B "C1'" 1 ATOM 170 N N1 . DC B 1 3 ? 6.084 8.127 2.892 1.00 12.68 ? 9 DC B N1 1 ATOM 171 C C2 . DC B 1 3 ? 6.271 9.261 2.166 1.00 11.21 ? 9 DC B C2 1 ATOM 172 O O2 . DC B 1 3 ? 5.460 9.606 1.304 1.00 13.95 ? 9 DC B O2 1 ATOM 173 N N3 . DC B 1 3 ? 7.378 9.965 2.334 1.00 6.13 ? 9 DC B N3 1 ATOM 174 C C4 . DC B 1 3 ? 8.348 9.514 3.126 1.00 11.28 ? 9 DC B C4 1 ATOM 175 N N4 . DC B 1 3 ? 9.487 10.220 3.186 1.00 14.28 ? 9 DC B N4 1 ATOM 176 C C5 . DC B 1 3 ? 8.207 8.323 3.865 1.00 8.60 ? 9 DC B C5 1 ATOM 177 C C6 . DC B 1 3 ? 7.041 7.683 3.719 1.00 12.21 ? 9 DC B C6 1 ATOM 178 P P . DG B 1 4 ? 5.747 3.440 0.591 1.00 25.09 ? 10 DG B P 1 ATOM 179 O OP1 . DG B 1 4 ? 5.176 2.170 0.086 1.00 26.94 ? 10 DG B OP1 1 ATOM 180 O OP2 . DG B 1 4 ? 7.152 3.483 1.078 1.00 23.79 ? 10 DG B OP2 1 ATOM 181 O "O5'" . DG B 1 4 ? 5.694 4.549 -0.559 1.00 25.79 ? 10 DG B "O5'" 1 ATOM 182 C "C5'" . DG B 1 4 ? 4.712 4.665 -1.587 1.00 20.28 ? 10 DG B "C5'" 1 ATOM 183 C "C4'" . DG B 1 4 ? 5.144 5.769 -2.554 1.00 18.63 ? 10 DG B "C4'" 1 ATOM 184 O "O4'" . DG B 1 4 ? 5.329 6.961 -1.832 1.00 18.18 ? 10 DG B "O4'" 1 ATOM 185 C "C3'" . DG B 1 4 ? 6.532 5.609 -3.157 1.00 17.52 ? 10 DG B "C3'" 1 ATOM 186 O "O3'" . DG B 1 4 ? 6.614 4.640 -4.170 1.00 17.91 ? 10 DG B "O3'" 1 ATOM 187 C "C2'" . DG B 1 4 ? 6.680 6.948 -3.730 1.00 16.83 ? 10 DG B "C2'" 1 ATOM 188 C "C1'" . DG B 1 4 ? 6.276 7.750 -2.537 1.00 16.93 ? 10 DG B "C1'" 1 ATOM 189 N N9 . DG B 1 4 ? 7.462 8.038 -1.749 1.00 14.09 ? 10 DG B N9 1 ATOM 190 C C8 . DG B 1 4 ? 7.951 7.438 -0.636 1.00 15.32 ? 10 DG B C8 1 ATOM 191 N N7 . DG B 1 4 ? 9.073 7.955 -0.206 1.00 17.00 ? 10 DG B N7 1 ATOM 192 C C5 . DG B 1 4 ? 9.330 8.990 -1.134 1.00 20.47 ? 10 DG B C5 1 ATOM 193 C C6 . DG B 1 4 ? 10.403 9.973 -1.235 1.00 24.06 ? 10 DG B C6 1 ATOM 194 O O6 . DG B 1 4 ? 11.374 10.220 -0.510 1.00 27.62 ? 10 DG B O6 1 ATOM 195 N N1 . DG B 1 4 ? 10.227 10.804 -2.331 1.00 21.28 ? 10 DG B N1 1 ATOM 196 C C2 . DG B 1 4 ? 9.190 10.730 -3.180 1.00 18.38 ? 10 DG B C2 1 ATOM 197 N N2 . DG B 1 4 ? 9.157 11.604 -4.141 1.00 19.44 ? 10 DG B N2 1 ATOM 198 N N3 . DG B 1 4 ? 8.196 9.872 -3.122 1.00 20.53 ? 10 DG B N3 1 ATOM 199 C C4 . DG B 1 4 ? 8.334 9.035 -2.073 1.00 17.31 ? 10 DG B C4 1 ATOM 200 P P . DG B 1 5 ? 8.019 4.030 -4.607 1.00 21.43 ? 11 DG B P 1 ATOM 201 O OP1 . DG B 1 5 ? 7.690 2.846 -5.420 1.00 18.19 ? 11 DG B OP1 1 ATOM 202 O OP2 . DG B 1 5 ? 8.953 3.877 -3.457 1.00 21.70 ? 11 DG B OP2 1 ATOM 203 O "O5'" . DG B 1 5 ? 8.587 5.235 -5.498 1.00 16.80 ? 11 DG B "O5'" 1 ATOM 204 C "C5'" . DG B 1 5 ? 8.136 5.529 -6.826 1.00 16.51 ? 11 DG B "C5'" 1 ATOM 205 C "C4'" . DG B 1 5 ? 9.056 6.528 -7.452 1.00 13.44 ? 11 DG B "C4'" 1 ATOM 206 O "O4'" . DG B 1 5 ? 9.010 7.615 -6.574 1.00 14.46 ? 11 DG B "O4'" 1 ATOM 207 C "C3'" . DG B 1 5 ? 10.498 6.056 -7.388 1.00 12.70 ? 11 DG B "C3'" 1 ATOM 208 O "O3'" . DG B 1 5 ? 10.804 5.249 -8.504 1.00 15.21 ? 11 DG B "O3'" 1 ATOM 209 C "C2'" . DG B 1 5 ? 11.128 7.373 -7.516 1.00 14.79 ? 11 DG B "C2'" 1 ATOM 210 C "C1'" . DG B 1 5 ? 10.314 8.189 -6.550 1.00 11.81 ? 11 DG B "C1'" 1 ATOM 211 N N9 . DG B 1 5 ? 10.987 8.137 -5.259 1.00 9.91 ? 11 DG B N9 1 ATOM 212 C C8 . DG B 1 5 ? 10.811 7.306 -4.194 1.00 11.03 ? 11 DG B C8 1 ATOM 213 N N7 . DG B 1 5 ? 11.673 7.530 -3.211 1.00 10.38 ? 11 DG B N7 1 ATOM 214 C C5 . DG B 1 5 ? 12.440 8.621 -3.667 1.00 7.87 ? 11 DG B C5 1 ATOM 215 C C6 . DG B 1 5 ? 13.550 9.364 -3.072 1.00 10.31 ? 11 DG B C6 1 ATOM 216 O O6 . DG B 1 5 ? 14.155 9.205 -2.023 1.00 6.82 ? 11 DG B O6 1 ATOM 217 N N1 . DG B 1 5 ? 14.027 10.387 -3.891 1.00 9.50 ? 11 DG B N1 1 ATOM 218 C C2 . DG B 1 5 ? 13.513 10.674 -5.109 1.00 7.64 ? 11 DG B C2 1 ATOM 219 N N2 . DG B 1 5 ? 14.053 11.660 -5.788 1.00 4.71 ? 11 DG B N2 1 ATOM 220 N N3 . DG B 1 5 ? 12.503 10.025 -5.682 1.00 8.15 ? 11 DG B N3 1 ATOM 221 C C4 . DG B 1 5 ? 12.015 9.004 -4.911 1.00 8.12 ? 11 DG B C4 1 ATOM 222 P P . DC B 1 6 ? 12.165 4.419 -8.729 1.00 12.10 ? 12 DC B P 1 ATOM 223 O OP1 . DC B 1 6 ? 11.968 3.803 -10.044 1.00 19.66 ? 12 DC B OP1 1 ATOM 224 O OP2 . DC B 1 6 ? 12.496 3.546 -7.568 1.00 10.28 ? 12 DC B OP2 1 ATOM 225 O "O5'" . DC B 1 6 ? 13.301 5.581 -8.939 1.00 12.45 ? 12 DC B "O5'" 1 ATOM 226 C "C5'" . DC B 1 6 ? 13.693 6.083 -10.235 1.00 8.40 ? 12 DC B "C5'" 1 ATOM 227 C "C4'" . DC B 1 6 ? 14.874 6.981 -10.063 1.00 10.65 ? 12 DC B "C4'" 1 ATOM 228 O "O4'" . DC B 1 6 ? 14.552 7.800 -8.948 1.00 15.14 ? 12 DC B "O4'" 1 ATOM 229 C "C3'" . DC B 1 6 ? 16.137 6.354 -9.606 1.00 12.50 ? 12 DC B "C3'" 1 ATOM 230 O "O3'" . DC B 1 6 ? 16.896 5.729 -10.643 1.00 15.36 ? 12 DC B "O3'" 1 ATOM 231 C "C2'" . DC B 1 6 ? 16.806 7.526 -8.948 1.00 10.23 ? 12 DC B "C2'" 1 ATOM 232 C "C1'" . DC B 1 6 ? 15.696 8.138 -8.149 1.00 12.69 ? 12 DC B "C1'" 1 ATOM 233 N N1 . DC B 1 6 ? 15.558 7.758 -6.709 1.00 15.07 ? 12 DC B N1 1 ATOM 234 C C2 . DC B 1 6 ? 16.332 8.377 -5.745 1.00 11.21 ? 12 DC B C2 1 ATOM 235 O O2 . DC B 1 6 ? 17.059 9.344 -5.976 1.00 7.19 ? 12 DC B O2 1 ATOM 236 N N3 . DC B 1 6 ? 16.233 7.934 -4.481 1.00 10.33 ? 12 DC B N3 1 ATOM 237 C C4 . DC B 1 6 ? 15.408 6.957 -4.134 1.00 15.20 ? 12 DC B C4 1 ATOM 238 N N4 . DC B 1 6 ? 15.392 6.521 -2.859 1.00 18.10 ? 12 DC B N4 1 ATOM 239 C C5 . DC B 1 6 ? 14.552 6.367 -5.088 1.00 14.40 ? 12 DC B C5 1 ATOM 240 C C6 . DC B 1 6 ? 14.692 6.783 -6.347 1.00 12.47 ? 12 DC B C6 1 HETATM 241 O O . HOH C 2 . ? 8.244 18.460 0.187 1.00 9.92 ? 13 HOH A O 1 HETATM 242 O O . HOH C 2 . ? 21.336 14.031 -5.822 1.00 50.04 ? 14 HOH A O 1 HETATM 243 O O . HOH C 2 . ? 18.415 19.858 2.269 1.00 2.96 ? 17 HOH A O 1 HETATM 244 O O . HOH C 2 . ? 6.654 19.189 5.492 1.00 17.06 ? 18 HOH A O 1 HETATM 245 O O . HOH C 2 . ? 10.536 15.023 3.876 1.00 33.08 ? 19 HOH A O 1 HETATM 246 O O . HOH C 2 . ? 8.872 16.989 1.978 1.00 15.94 ? 21 HOH A O 1 HETATM 247 O O . HOH C 2 . ? 16.538 6.548 1.290 1.00 47.26 ? 22 HOH A O 1 HETATM 248 O O . HOH C 2 . ? 6.414 19.032 2.477 1.00 29.84 ? 23 HOH A O 1 HETATM 249 O O . HOH C 2 . ? 20.804 21.929 1.589 1.00 29.25 ? 24 HOH A O 1 HETATM 250 O O . HOH C 2 . ? 21.416 20.879 -1.208 1.00 56.70 ? 26 HOH A O 1 HETATM 251 O O . HOH C 2 . ? 8.413 19.319 -2.330 1.00 18.65 ? 28 HOH A O 1 HETATM 252 O O . HOH C 2 . ? 11.887 17.588 -0.085 1.00 55.01 ? 32 HOH A O 1 HETATM 253 O O . HOH C 2 . ? 11.596 22.287 -5.817 1.00 35.56 ? 34 HOH A O 1 HETATM 254 O O . HOH D 2 . ? 3.381 8.019 10.608 1.00 60.91 ? 15 HOH B O 1 HETATM 255 O O . HOH D 2 . ? 15.343 2.967 -12.193 1.00 8.06 ? 16 HOH B O 1 HETATM 256 O O . HOH D 2 . ? 2.166 11.450 9.748 1.00 75.15 ? 20 HOH B O 1 HETATM 257 O O . HOH D 2 . ? 15.527 4.576 -0.876 1.00 28.16 ? 25 HOH B O 1 HETATM 258 O O . HOH D 2 . ? 11.996 9.956 8.125 1.00 54.15 ? 27 HOH B O 1 HETATM 259 O O . HOH D 2 . ? 14.450 1.936 -5.882 1.00 64.03 ? 29 HOH B O 1 HETATM 260 O O . HOH D 2 . ? 12.466 6.513 -0.182 1.00 46.30 ? 30 HOH B O 1 HETATM 261 O O . HOH D 2 . ? 10.784 14.911 7.133 1.00 77.64 ? 31 HOH B O 1 HETATM 262 O O . HOH D 2 . ? 17.275 3.072 -10.083 1.00 43.53 ? 33 HOH B O 1 #