data_275D # _entry.id 275D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 275D pdb_0000275d 10.2210/pdb275d/pdb RCSB ADFB63 ? ? WWPDB D_1000177687 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1996-04-15 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 275D _pdbx_database_status.recvd_initial_deposition_date 1995-09-29 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mooers, B.H.' 1 'Schroth, G.P.' 2 'Baxter, W.W.' 3 'Ho, P.S.' 4 # _citation.id primary _citation.title 'Alternating and non-alternating dG-dC hexanucleotides crystallize as canonical A-DNA.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 249 _citation.page_first 772 _citation.page_last 784 _citation.year 1995 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 7602589 _citation.pdbx_database_id_DOI 10.1006/jmbi.1995.0336 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mooers, B.H.' 1 ? primary 'Schroth, G.P.' 2 ? primary 'Baxter, W.W.' 3 ? primary 'Ho, P.S.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*(5CM)P*CP*GP*GP*C)-3') ; 1824.232 2 ? ? ? ? 2 water nat water 18.015 31 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DG)(5CM)(DC)(DG)(DG)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GCCGGC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 5CM n 1 3 DC n 1 4 DG n 1 5 DG n 1 6 DC n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5CM 'DNA linking' n "5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O7 P' 321.224 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 5CM 2 2 2 5CM +C A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DG 5 5 5 DG G A . n A 1 6 DC 6 6 6 DC C A . n B 1 1 DG 1 7 7 DG G B . n B 1 2 5CM 2 8 8 5CM +C B . n B 1 3 DC 3 9 9 DC C B . n B 1 4 DG 4 10 10 DG G B . n B 1 5 DG 5 11 11 DG G B . n B 1 6 DC 6 12 12 DC C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 14 14 HOH HOH A . C 2 HOH 2 22 22 HOH HOH A . C 2 HOH 3 24 24 HOH HOH A . C 2 HOH 4 25 25 HOH HOH A . C 2 HOH 5 26 26 HOH HOH A . C 2 HOH 6 30 30 HOH HOH A . C 2 HOH 7 31 31 HOH HOH A . C 2 HOH 8 32 32 HOH HOH A . C 2 HOH 9 34 34 HOH HOH A . C 2 HOH 10 37 37 HOH HOH A . C 2 HOH 11 39 39 HOH HOH A . C 2 HOH 12 40 40 HOH HOH A . C 2 HOH 13 41 41 HOH HOH A . D 2 HOH 1 13 13 HOH HOH B . D 2 HOH 2 15 15 HOH HOH B . D 2 HOH 3 16 16 HOH HOH B . D 2 HOH 4 17 17 HOH HOH B . D 2 HOH 5 18 18 HOH HOH B . D 2 HOH 6 19 19 HOH HOH B . D 2 HOH 7 20 20 HOH HOH B . D 2 HOH 8 21 21 HOH HOH B . D 2 HOH 9 23 23 HOH HOH B . D 2 HOH 10 27 27 HOH HOH B . D 2 HOH 11 28 28 HOH HOH B . D 2 HOH 12 29 29 HOH HOH B . D 2 HOH 13 33 33 HOH HOH B . D 2 HOH 14 35 35 HOH HOH B . D 2 HOH 15 36 36 HOH HOH B . D 2 HOH 16 38 38 HOH HOH B . D 2 HOH 17 42 42 HOH HOH B . D 2 HOH 18 43 43 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR refinement . ? 1 XSCANS 'data reduction' . ? 2 # _cell.entry_id 275D _cell.length_a 38.900 _cell.length_b 45.970 _cell.length_c 39.050 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 275D _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 20 # _exptl.entry_id 275D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.76 _exptl_crystal.density_percent_sol 63.7000 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details 'ROOM TEMPERATURE' _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_details 'pH 7.00, VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 'NA CACODYLATE' ? ? ? 1 4 1 SPERMINE ? ? ? 1 5 1 MGCL2 ? ? ? 1 6 2 WATER ? ? ? 1 7 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type 'SIEMENS P4' _diffrn_detector.pdbx_collection_date 1994-05-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'SEALED TUBE' _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 275D _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.000 _reflns.d_resolution_high 2.000 _reflns.number_obs 1899 _reflns.number_all 2816 _reflns.percent_possible_obs 73.600 _reflns.pdbx_Rmerge_I_obs 0.05 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 275D _refine.ls_number_reflns_obs 1190 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.000 _refine.ls_d_res_high 2.000 _refine.ls_percent_reflns_obs 47.900 _refine.ls_R_factor_obs 0.151 _refine.ls_R_factor_all 0.172 _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 15.60 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 240 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 31 _refine_hist.number_atoms_total 273 _refine_hist.d_res_high 2.000 _refine_hist.d_res_low 8.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.020 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 4.16 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 34.8 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.79 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 275D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 275D _struct.title 'ALTERNATING AND NON-ALTERNATING DG-DC HEXANUCLEOTIDES CRYSTALLIZE AS CANONICAL A-DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 275D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'A-DNA, DOUBLE HELIX, MODIFIED, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 275D _struct_ref.pdbx_db_accession 275D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 275D A 1 ? 6 ? 275D 1 ? 6 ? 1 6 2 1 275D B 1 ? 6 ? 275D 7 ? 12 ? 7 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 1 "O3'" ? ? ? 1_555 A 5CM 2 P ? ? A DG 1 A 5CM 2 1_555 ? ? ? ? ? ? ? 1.616 ? ? covale2 covale both ? A 5CM 2 "O3'" ? ? ? 1_555 A DC 3 P ? ? A 5CM 2 A DC 3 1_555 ? ? ? ? ? ? ? 1.599 ? ? covale3 covale both ? B DG 1 "O3'" ? ? ? 1_555 B 5CM 2 P ? ? B DG 7 B 5CM 8 1_555 ? ? ? ? ? ? ? 1.646 ? ? covale4 covale both ? B 5CM 2 "O3'" ? ? ? 1_555 B DC 3 P ? ? B 5CM 8 B DC 9 1_555 ? ? ? ? ? ? ? 1.690 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 1 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 1 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 1 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A 5CM 2 N3 ? ? ? 1_555 B DG 5 N1 ? ? A 5CM 2 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A 5CM 2 N4 ? ? ? 1_555 B DG 5 O6 ? ? A 5CM 2 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A 5CM 2 O2 ? ? ? 1_555 B DG 5 N2 ? ? A 5CM 2 B DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B 5CM 2 N3 ? ? A DG 5 B 5CM 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B 5CM 2 O2 ? ? A DG 5 B 5CM 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B 5CM 2 N4 ? ? A DG 5 B 5CM 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 6 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 6 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 6 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C6 A DG 1 ? ? N1 A DG 1 ? ? 1.344 1.391 -0.047 0.007 N 2 1 "C4'" A DG 5 ? ? "C3'" A DG 5 ? ? 1.460 1.521 -0.061 0.010 N 3 1 C6 A DG 5 ? ? N1 A DG 5 ? ? 1.333 1.391 -0.058 0.007 N 4 1 C6 B DG 7 ? ? N1 B DG 7 ? ? 1.316 1.391 -0.075 0.007 N 5 1 "O3'" B 5CM 8 ? ? P B DC 9 ? ? 1.690 1.607 0.083 0.012 Y 6 1 C6 B DG 10 ? ? N1 B DG 10 ? ? 1.337 1.391 -0.054 0.007 N 7 1 P B DG 11 ? ? "O5'" B DG 11 ? ? 1.655 1.593 0.062 0.010 N 8 1 "C3'" B DG 11 ? ? "C2'" B DG 11 ? ? 1.467 1.516 -0.049 0.008 N 9 1 N1 B DG 11 ? ? C2 B DG 11 ? ? 1.322 1.373 -0.051 0.008 N 10 1 "O3'" B DG 11 ? ? P B DC 12 ? ? 1.692 1.607 0.085 0.012 Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C5'" A DG 1 ? ? "C4'" A DG 1 ? ? "O4'" A DG 1 ? ? 120.21 109.80 10.41 1.10 N 2 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.48 108.30 3.18 0.30 N 3 1 N1 A DG 1 ? ? C6 A DG 1 ? ? O6 A DG 1 ? ? 114.07 119.90 -5.83 0.60 N 4 1 C5 A DG 1 ? ? C6 A DG 1 ? ? O6 A DG 1 ? ? 132.49 128.60 3.89 0.60 N 5 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 110.12 108.30 1.82 0.30 N 6 1 N1 A DC 3 ? ? C2 A DC 3 ? ? O2 A DC 3 ? ? 123.06 118.90 4.16 0.60 N 7 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? "C2'" A DG 4 ? ? 110.86 106.80 4.06 0.50 N 8 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.09 108.30 2.79 0.30 N 9 1 N9 A DG 4 ? ? C4 A DG 4 ? ? C5 A DG 4 ? ? 108.42 105.40 3.02 0.40 N 10 1 N1 A DG 4 ? ? C2 A DG 4 ? ? N2 A DG 4 ? ? 122.34 116.20 6.14 0.90 N 11 1 N3 A DG 4 ? ? C2 A DG 4 ? ? N2 A DG 4 ? ? 112.20 119.90 -7.70 0.70 N 12 1 "O4'" A DG 5 ? ? "C4'" A DG 5 ? ? "C3'" A DG 5 ? ? 101.77 104.50 -2.73 0.40 N 13 1 N1 A DG 5 ? ? C6 A DG 5 ? ? O6 A DG 5 ? ? 113.75 119.90 -6.15 0.60 N 14 1 C5 A DG 5 ? ? C6 A DG 5 ? ? O6 A DG 5 ? ? 133.62 128.60 5.02 0.60 N 15 1 "O5'" A DC 6 ? ? "C5'" A DC 6 ? ? "C4'" A DC 6 ? ? 103.76 109.40 -5.64 0.80 N 16 1 "O4'" B DG 7 ? ? "C1'" B DG 7 ? ? N9 B DG 7 ? ? 110.78 108.30 2.48 0.30 N 17 1 C5 B DG 7 ? ? N7 B DG 7 ? ? C8 B DG 7 ? ? 100.97 104.30 -3.33 0.50 N 18 1 N7 B DG 7 ? ? C8 B DG 7 ? ? N9 B DG 7 ? ? 116.81 113.10 3.71 0.50 N 19 1 C8 B DG 7 ? ? N9 B DG 7 ? ? C4 B DG 7 ? ? 103.61 106.40 -2.79 0.40 N 20 1 N1 B DG 7 ? ? C6 B DG 7 ? ? O6 B DG 7 ? ? 115.50 119.90 -4.40 0.60 N 21 1 "C3'" B DG 7 ? ? "O3'" B DG 7 ? ? P B 5CM 8 ? ? 129.56 119.70 9.86 1.20 Y 22 1 "O4'" B DC 9 ? ? "C1'" B DC 9 ? ? N1 B DC 9 ? ? 111.69 108.30 3.39 0.30 N 23 1 N1 B DC 9 ? ? C2 B DC 9 ? ? O2 B DC 9 ? ? 123.70 118.90 4.80 0.60 N 24 1 N3 B DC 9 ? ? C2 B DC 9 ? ? O2 B DC 9 ? ? 117.49 121.90 -4.41 0.70 N 25 1 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 113.30 108.30 5.00 0.30 N 26 1 N3 B DG 10 ? ? C2 B DG 10 ? ? N2 B DG 10 ? ? 115.61 119.90 -4.29 0.70 N 27 1 "O4'" B DG 11 ? ? "C4'" B DG 11 ? ? "C3'" B DG 11 ? ? 100.09 104.50 -4.41 0.40 N 28 1 N1 B DG 11 ? ? C6 B DG 11 ? ? O6 B DG 11 ? ? 112.36 119.90 -7.54 0.60 N 29 1 C5 B DG 11 ? ? C6 B DG 11 ? ? O6 B DG 11 ? ? 134.40 128.60 5.80 0.60 N 30 1 "O5'" B DC 12 ? ? "C5'" B DC 12 ? ? "C4'" B DC 12 ? ? 103.34 109.40 -6.06 0.80 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG A 4 ? ? 0.069 'SIDE CHAIN' 2 1 DG B 10 ? ? 0.054 'SIDE CHAIN' # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A 5CM 2 A 5CM 2 ? DC ? 2 B 5CM 2 B 5CM 8 ? DC ? # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 33 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5CM N1 N N N 1 5CM C2 C N N 2 5CM N3 N N N 3 5CM C4 C N N 4 5CM C5 C N N 5 5CM C5A C N N 6 5CM C6 C N N 7 5CM O2 O N N 8 5CM N4 N N N 9 5CM "C1'" C N R 10 5CM "C2'" C N N 11 5CM "C3'" C N S 12 5CM "C4'" C N R 13 5CM "O4'" O N N 14 5CM "O3'" O N N 15 5CM "C5'" C N N 16 5CM "O5'" O N N 17 5CM P P N N 18 5CM OP1 O N N 19 5CM OP2 O N N 20 5CM OP3 O N N 21 5CM H5A1 H N N 22 5CM H5A2 H N N 23 5CM H5A3 H N N 24 5CM H6 H N N 25 5CM HN41 H N N 26 5CM HN42 H N N 27 5CM "H1'" H N N 28 5CM "H2'" H N N 29 5CM "H2''" H N N 30 5CM "H3'" H N N 31 5CM "H4'" H N N 32 5CM "HO3'" H N N 33 5CM "H5'" H N N 34 5CM "H5''" H N N 35 5CM HOP2 H N N 36 5CM HOP3 H N N 37 DC OP3 O N N 38 DC P P N N 39 DC OP1 O N N 40 DC OP2 O N N 41 DC "O5'" O N N 42 DC "C5'" C N N 43 DC "C4'" C N R 44 DC "O4'" O N N 45 DC "C3'" C N S 46 DC "O3'" O N N 47 DC "C2'" C N N 48 DC "C1'" C N R 49 DC N1 N N N 50 DC C2 C N N 51 DC O2 O N N 52 DC N3 N N N 53 DC C4 C N N 54 DC N4 N N N 55 DC C5 C N N 56 DC C6 C N N 57 DC HOP3 H N N 58 DC HOP2 H N N 59 DC "H5'" H N N 60 DC "H5''" H N N 61 DC "H4'" H N N 62 DC "H3'" H N N 63 DC "HO3'" H N N 64 DC "H2'" H N N 65 DC "H2''" H N N 66 DC "H1'" H N N 67 DC H41 H N N 68 DC H42 H N N 69 DC H5 H N N 70 DC H6 H N N 71 DG OP3 O N N 72 DG P P N N 73 DG OP1 O N N 74 DG OP2 O N N 75 DG "O5'" O N N 76 DG "C5'" C N N 77 DG "C4'" C N R 78 DG "O4'" O N N 79 DG "C3'" C N S 80 DG "O3'" O N N 81 DG "C2'" C N N 82 DG "C1'" C N R 83 DG N9 N Y N 84 DG C8 C Y N 85 DG N7 N Y N 86 DG C5 C Y N 87 DG C6 C N N 88 DG O6 O N N 89 DG N1 N N N 90 DG C2 C N N 91 DG N2 N N N 92 DG N3 N N N 93 DG C4 C Y N 94 DG HOP3 H N N 95 DG HOP2 H N N 96 DG "H5'" H N N 97 DG "H5''" H N N 98 DG "H4'" H N N 99 DG "H3'" H N N 100 DG "HO3'" H N N 101 DG "H2'" H N N 102 DG "H2''" H N N 103 DG "H1'" H N N 104 DG H8 H N N 105 DG H1 H N N 106 DG H21 H N N 107 DG H22 H N N 108 HOH O O N N 109 HOH H1 H N N 110 HOH H2 H N N 111 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5CM N1 C2 sing N N 1 5CM N1 C6 sing N N 2 5CM N1 "C1'" sing N N 3 5CM C2 N3 sing N N 4 5CM C2 O2 doub N N 5 5CM N3 C4 doub N N 6 5CM C4 C5 sing N N 7 5CM C4 N4 sing N N 8 5CM C5 C5A sing N N 9 5CM C5 C6 doub N N 10 5CM C5A H5A1 sing N N 11 5CM C5A H5A2 sing N N 12 5CM C5A H5A3 sing N N 13 5CM C6 H6 sing N N 14 5CM N4 HN41 sing N N 15 5CM N4 HN42 sing N N 16 5CM "C1'" "C2'" sing N N 17 5CM "C1'" "O4'" sing N N 18 5CM "C1'" "H1'" sing N N 19 5CM "C2'" "C3'" sing N N 20 5CM "C2'" "H2'" sing N N 21 5CM "C2'" "H2''" sing N N 22 5CM "C3'" "C4'" sing N N 23 5CM "C3'" "O3'" sing N N 24 5CM "C3'" "H3'" sing N N 25 5CM "C4'" "O4'" sing N N 26 5CM "C4'" "C5'" sing N N 27 5CM "C4'" "H4'" sing N N 28 5CM "O3'" "HO3'" sing N N 29 5CM "C5'" "O5'" sing N N 30 5CM "C5'" "H5'" sing N N 31 5CM "C5'" "H5''" sing N N 32 5CM "O5'" P sing N N 33 5CM P OP1 doub N N 34 5CM P OP2 sing N N 35 5CM P OP3 sing N N 36 5CM OP2 HOP2 sing N N 37 5CM OP3 HOP3 sing N N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 HOH O H1 sing N N 113 HOH O H2 sing N N 114 # _ndb_struct_conf_na.entry_id 275D _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 6 1_555 0.033 0.140 0.257 -4.126 2.765 0.425 1 A_DG1:DC12_B A 1 ? B 12 ? 19 1 1 A 5CM 2 1_555 B DG 5 1_555 0.493 0.035 -0.114 9.430 -10.318 -0.670 2 A_5CM2:DG11_B A 2 ? B 11 ? 19 1 1 A DC 3 1_555 B DG 4 1_555 0.684 -0.123 0.137 5.103 -17.814 3.205 3 A_DC3:DG10_B A 3 ? B 10 ? 19 1 1 A DG 4 1_555 B DC 3 1_555 -0.257 -0.139 0.080 1.695 -9.922 5.035 4 A_DG4:DC9_B A 4 ? B 9 ? 19 1 1 A DG 5 1_555 B 5CM 2 1_555 0.197 0.013 0.056 -5.061 -14.035 1.326 5 A_DG5:5CM8_B A 5 ? B 8 ? 19 1 1 A DC 6 1_555 B DG 1 1_555 0.765 -0.159 -0.066 10.247 -2.585 0.151 6 A_DC6:DG7_B A 6 ? B 7 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 6 1_555 A 5CM 2 1_555 B DG 5 1_555 -0.724 -1.428 3.108 3.256 -0.161 33.153 -2.466 1.773 3.032 -0.281 -5.689 33.308 1 AA_DG15CM2:DG11DC12_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 A 5CM 2 1_555 B DG 5 1_555 A DC 3 1_555 B DG 4 1_555 0.395 -1.789 3.347 -1.114 11.971 27.984 -5.603 -0.956 2.381 23.434 2.181 30.410 2 AA_5CM2DC3:DG10DG11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A DC 3 1_555 B DG 4 1_555 A DG 4 1_555 B DC 3 1_555 0.096 -1.706 3.116 -0.891 19.337 27.383 -5.516 -0.284 1.594 35.737 1.646 33.427 3 AA_DC3DG4:DC9DG10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A DG 4 1_555 B DC 3 1_555 A DG 5 1_555 B 5CM 2 1_555 -0.657 -1.670 3.546 0.519 8.571 31.512 -4.486 1.260 2.989 15.426 -0.934 32.632 4 AA_DG4DG5:5CM8DC9_BB A 4 ? B 9 ? A 5 ? B 8 ? 1 A DG 5 1_555 B 5CM 2 1_555 A DC 6 1_555 B DG 1 1_555 0.250 -1.265 2.937 0.096 7.254 32.604 -3.234 -0.421 2.604 12.725 -0.168 33.380 5 AA_DG5DC6:DG75CM8_BB A 5 ? B 8 ? A 6 ? B 7 ? # _atom_sites.entry_id 275D _atom_sites.fract_transf_matrix[1][1] 0.025707 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021753 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.025608 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DG A 1 1 ? 21.440 13.121 3.342 1.00 20.91 ? 1 DG A "O5'" 1 ATOM 2 C "C5'" . DG A 1 1 ? 22.590 13.689 2.711 1.00 20.00 ? 1 DG A "C5'" 1 ATOM 3 C "C4'" . DG A 1 1 ? 22.545 13.680 1.178 1.00 19.07 ? 1 DG A "C4'" 1 ATOM 4 O "O4'" . DG A 1 1 ? 22.789 12.444 0.444 1.00 17.93 ? 1 DG A "O4'" 1 ATOM 5 C "C3'" . DG A 1 1 ? 21.248 14.249 0.690 1.00 19.32 ? 1 DG A "C3'" 1 ATOM 6 O "O3'" . DG A 1 1 ? 21.320 15.646 0.740 1.00 21.48 ? 1 DG A "O3'" 1 ATOM 7 C "C2'" . DG A 1 1 ? 21.311 13.774 -0.740 1.00 18.74 ? 1 DG A "C2'" 1 ATOM 8 C "C1'" . DG A 1 1 ? 21.857 12.387 -0.618 1.00 16.87 ? 1 DG A "C1'" 1 ATOM 9 N N9 . DG A 1 1 ? 20.824 11.403 -0.365 1.00 15.13 ? 1 DG A N9 1 ATOM 10 C C8 . DG A 1 1 ? 20.628 10.658 0.744 1.00 14.15 ? 1 DG A C8 1 ATOM 11 N N7 . DG A 1 1 ? 19.697 9.753 0.666 1.00 14.89 ? 1 DG A N7 1 ATOM 12 C C5 . DG A 1 1 ? 19.220 9.917 -0.630 1.00 14.62 ? 1 DG A C5 1 ATOM 13 C C6 . DG A 1 1 ? 18.188 9.225 -1.358 1.00 15.28 ? 1 DG A C6 1 ATOM 14 O O6 . DG A 1 1 ? 17.485 8.269 -1.081 1.00 15.23 ? 1 DG A O6 1 ATOM 15 N N1 . DG A 1 1 ? 18.016 9.688 -2.608 1.00 14.82 ? 1 DG A N1 1 ATOM 16 C C2 . DG A 1 1 ? 18.741 10.660 -3.164 1.00 14.34 ? 1 DG A C2 1 ATOM 17 N N2 . DG A 1 1 ? 18.522 10.866 -4.464 1.00 12.83 ? 1 DG A N2 1 ATOM 18 N N3 . DG A 1 1 ? 19.712 11.334 -2.515 1.00 15.18 ? 1 DG A N3 1 ATOM 19 C C4 . DG A 1 1 ? 19.896 10.930 -1.250 1.00 15.10 ? 1 DG A C4 1 HETATM 20 N N1 . 5CM A 1 2 ? 17.306 14.134 -3.016 1.00 18.09 ? 2 5CM A N1 1 HETATM 21 C C2 . 5CM A 1 2 ? 16.413 13.191 -3.547 1.00 18.10 ? 2 5CM A C2 1 HETATM 22 N N3 . 5CM A 1 2 ? 15.881 12.249 -2.711 1.00 17.27 ? 2 5CM A N3 1 HETATM 23 C C4 . 5CM A 1 2 ? 16.190 12.272 -1.391 1.00 17.72 ? 2 5CM A C4 1 HETATM 24 C C5 . 5CM A 1 2 ? 17.039 13.323 -0.792 1.00 17.10 ? 2 5CM A C5 1 HETATM 25 C C5A . 5CM A 1 2 ? 17.249 13.401 0.746 1.00 16.39 ? 2 5CM A C5A 1 HETATM 26 C C6 . 5CM A 1 2 ? 17.628 14.201 -1.652 1.00 17.01 ? 2 5CM A C6 1 HETATM 27 O O2 . 5CM A 1 2 ? 16.006 13.255 -4.712 1.00 17.93 ? 2 5CM A O2 1 HETATM 28 N N4 . 5CM A 1 2 ? 15.661 11.269 -0.646 1.00 18.61 ? 2 5CM A N4 1 HETATM 29 C "C1'" . 5CM A 1 2 ? 17.953 14.978 -4.020 1.00 19.35 ? 2 5CM A "C1'" 1 HETATM 30 C "C2'" . 5CM A 1 2 ? 17.202 16.258 -4.264 1.00 20.27 ? 2 5CM A "C2'" 1 HETATM 31 C "C3'" . 5CM A 1 2 ? 17.792 17.143 -3.196 1.00 19.83 ? 2 5CM A "C3'" 1 HETATM 32 C "C4'" . 5CM A 1 2 ? 19.281 16.791 -3.340 1.00 21.13 ? 2 5CM A "C4'" 1 HETATM 33 O "O4'" . 5CM A 1 2 ? 19.271 15.357 -3.568 1.00 20.73 ? 2 5CM A "O4'" 1 HETATM 34 O "O3'" . 5CM A 1 2 ? 17.518 18.495 -3.470 1.00 19.54 ? 2 5CM A "O3'" 1 HETATM 35 C "C5'" . 5CM A 1 2 ? 20.153 17.171 -2.140 1.00 21.58 ? 2 5CM A "C5'" 1 HETATM 36 O "O5'" . 5CM A 1 2 ? 19.600 16.456 -1.047 1.00 22.46 ? 2 5CM A "O5'" 1 HETATM 37 P P . 5CM A 1 2 ? 20.042 16.588 0.436 1.00 22.17 ? 2 5CM A P 1 HETATM 38 O OP1 . 5CM A 1 2 ? 20.488 17.991 0.527 1.00 22.30 ? 2 5CM A OP1 1 HETATM 39 O OP2 . 5CM A 1 2 ? 18.905 16.095 1.246 1.00 22.86 ? 2 5CM A OP2 1 ATOM 40 P P . DC A 1 3 ? 16.211 19.207 -2.885 1.00 18.45 ? 3 DC A P 1 ATOM 41 O OP1 . DC A 1 3 ? 16.202 20.529 -3.550 1.00 18.20 ? 3 DC A OP1 1 ATOM 42 O OP2 . DC A 1 3 ? 16.166 19.038 -1.408 1.00 18.42 ? 3 DC A OP2 1 ATOM 43 O "O5'" . DC A 1 3 ? 14.908 18.421 -3.439 1.00 17.07 ? 3 DC A "O5'" 1 ATOM 44 C "C5'" . DC A 1 3 ? 14.542 18.686 -4.798 1.00 15.83 ? 3 DC A "C5'" 1 ATOM 45 C "C4'" . DC A 1 3 ? 13.525 17.680 -5.221 1.00 14.54 ? 3 DC A "C4'" 1 ATOM 46 O "O4'" . DC A 1 3 ? 14.024 16.351 -4.917 1.00 14.63 ? 3 DC A "O4'" 1 ATOM 47 C "C3'" . DC A 1 3 ? 12.240 17.788 -4.517 1.00 13.54 ? 3 DC A "C3'" 1 ATOM 48 O "O3'" . DC A 1 3 ? 11.600 19.015 -4.855 1.00 14.74 ? 3 DC A "O3'" 1 ATOM 49 C "C2'" . DC A 1 3 ? 11.640 16.466 -4.914 1.00 13.10 ? 3 DC A "C2'" 1 ATOM 50 C "C1'" . DC A 1 3 ? 12.851 15.525 -4.743 1.00 13.03 ? 3 DC A "C1'" 1 ATOM 51 N N1 . DC A 1 3 ? 12.907 14.836 -3.452 1.00 12.27 ? 3 DC A N1 1 ATOM 52 C C2 . DC A 1 3 ? 12.100 13.722 -3.308 1.00 12.52 ? 3 DC A C2 1 ATOM 53 O O2 . DC A 1 3 ? 11.309 13.342 -4.184 1.00 11.65 ? 3 DC A O2 1 ATOM 54 N N3 . DC A 1 3 ? 12.130 13.064 -2.104 1.00 12.05 ? 3 DC A N3 1 ATOM 55 C C4 . DC A 1 3 ? 12.882 13.498 -1.087 1.00 10.96 ? 3 DC A C4 1 ATOM 56 N N4 . DC A 1 3 ? 12.808 12.809 0.041 1.00 9.84 ? 3 DC A N4 1 ATOM 57 C C5 . DC A 1 3 ? 13.716 14.648 -1.247 1.00 11.41 ? 3 DC A C5 1 ATOM 58 C C6 . DC A 1 3 ? 13.692 15.283 -2.439 1.00 11.80 ? 3 DC A C6 1 ATOM 59 P P . DG A 1 4 ? 10.324 19.503 -3.973 1.00 15.34 ? 4 DG A P 1 ATOM 60 O OP1 . DG A 1 4 ? 9.779 20.635 -4.755 1.00 16.65 ? 4 DG A OP1 1 ATOM 61 O OP2 . DG A 1 4 ? 10.647 19.670 -2.558 1.00 15.38 ? 4 DG A OP2 1 ATOM 62 O "O5'" . DG A 1 4 ? 9.230 18.317 -4.028 1.00 14.92 ? 4 DG A "O5'" 1 ATOM 63 C "C5'" . DG A 1 4 ? 8.279 18.221 -5.071 1.00 14.13 ? 4 DG A "C5'" 1 ATOM 64 C "C4'" . DG A 1 4 ? 7.320 17.198 -4.609 1.00 14.43 ? 4 DG A "C4'" 1 ATOM 65 O "O4'" . DG A 1 4 ? 8.083 16.038 -4.371 1.00 14.55 ? 4 DG A "O4'" 1 ATOM 66 C "C3'" . DG A 1 4 ? 6.633 17.490 -3.269 1.00 15.00 ? 4 DG A "C3'" 1 ATOM 67 O "O3'" . DG A 1 4 ? 5.539 18.407 -3.365 1.00 16.26 ? 4 DG A "O3'" 1 ATOM 68 C "C2'" . DG A 1 4 ? 6.154 16.111 -2.927 1.00 14.55 ? 4 DG A "C2'" 1 ATOM 69 C "C1'" . DG A 1 4 ? 7.376 15.350 -3.334 1.00 13.90 ? 4 DG A "C1'" 1 ATOM 70 N N9 . DG A 1 4 ? 8.234 15.089 -2.207 1.00 12.72 ? 4 DG A N9 1 ATOM 71 C C8 . DG A 1 4 ? 9.391 15.662 -1.796 1.00 12.46 ? 4 DG A C8 1 ATOM 72 N N7 . DG A 1 4 ? 9.962 15.047 -0.777 1.00 11.40 ? 4 DG A N7 1 ATOM 73 C C5 . DG A 1 4 ? 9.072 13.991 -0.516 1.00 12.09 ? 4 DG A C5 1 ATOM 74 C C6 . DG A 1 4 ? 9.082 12.893 0.455 1.00 11.87 ? 4 DG A C6 1 ATOM 75 O O6 . DG A 1 4 ? 9.934 12.550 1.268 1.00 12.89 ? 4 DG A O6 1 ATOM 76 N N1 . DG A 1 4 ? 7.960 12.135 0.351 1.00 10.59 ? 4 DG A N1 1 ATOM 77 C C2 . DG A 1 4 ? 6.969 12.350 -0.540 1.00 9.50 ? 4 DG A C2 1 ATOM 78 N N2 . DG A 1 4 ? 5.883 11.649 -0.549 1.00 8.57 ? 4 DG A N2 1 ATOM 79 N N3 . DG A 1 4 ? 6.962 13.275 -1.447 1.00 11.16 ? 4 DG A N3 1 ATOM 80 C C4 . DG A 1 4 ? 8.024 14.067 -1.377 1.00 12.06 ? 4 DG A C4 1 ATOM 81 P P . DG A 1 5 ? 4.989 19.167 -2.043 1.00 16.68 ? 5 DG A P 1 ATOM 82 O OP1 . DG A 1 5 ? 4.102 20.275 -2.482 1.00 17.71 ? 5 DG A OP1 1 ATOM 83 O OP2 . DG A 1 5 ? 6.136 19.439 -1.149 1.00 17.13 ? 5 DG A OP2 1 ATOM 84 O "O5'" . DG A 1 5 ? 4.044 18.065 -1.344 1.00 16.35 ? 5 DG A "O5'" 1 ATOM 85 C "C5'" . DG A 1 5 ? 2.771 17.653 -1.863 1.00 14.13 ? 5 DG A "C5'" 1 ATOM 86 C "C4'" . DG A 1 5 ? 2.244 16.542 -0.947 1.00 12.40 ? 5 DG A "C4'" 1 ATOM 87 O "O4'" . DG A 1 5 ? 3.310 15.602 -0.783 1.00 11.91 ? 5 DG A "O4'" 1 ATOM 88 C "C3'" . DG A 1 5 ? 2.011 16.971 0.429 1.00 11.75 ? 5 DG A "C3'" 1 ATOM 89 O "O3'" . DG A 1 5 ? 0.841 17.745 0.612 1.00 12.02 ? 5 DG A "O3'" 1 ATOM 90 C "C2'" . DG A 1 5 ? 2.059 15.658 1.150 1.00 11.39 ? 5 DG A "C2'" 1 ATOM 91 C "C1'" . DG A 1 5 ? 3.205 14.959 0.472 1.00 10.77 ? 5 DG A "C1'" 1 ATOM 92 N N9 . DG A 1 5 ? 4.501 14.969 1.139 1.00 8.78 ? 5 DG A N9 1 ATOM 93 C C8 . DG A 1 5 ? 5.543 15.822 0.953 1.00 9.14 ? 5 DG A C8 1 ATOM 94 N N7 . DG A 1 5 ? 6.599 15.609 1.716 1.00 8.54 ? 5 DG A N7 1 ATOM 95 C C5 . DG A 1 5 ? 6.178 14.495 2.488 1.00 8.35 ? 5 DG A C5 1 ATOM 96 C C6 . DG A 1 5 ? 6.845 13.749 3.552 1.00 7.36 ? 5 DG A C6 1 ATOM 97 O O6 . DG A 1 5 ? 7.920 13.862 4.109 1.00 8.63 ? 5 DG A O6 1 ATOM 98 N N1 . DG A 1 5 ? 6.093 12.758 4.032 1.00 7.22 ? 5 DG A N1 1 ATOM 99 C C2 . DG A 1 5 ? 4.853 12.467 3.594 1.00 6.63 ? 5 DG A C2 1 ATOM 100 N N2 . DG A 1 5 ? 4.281 11.520 4.264 1.00 6.58 ? 5 DG A N2 1 ATOM 101 N N3 . DG A 1 5 ? 4.195 13.096 2.617 1.00 7.00 ? 5 DG A N3 1 ATOM 102 C C4 . DG A 1 5 ? 4.913 14.107 2.106 1.00 7.71 ? 5 DG A C4 1 ATOM 103 P P . DC A 1 6 ? 0.715 18.651 2.012 1.00 12.20 ? 6 DC A P 1 ATOM 104 O OP1 . DC A 1 6 ? -0.579 19.403 2.010 1.00 12.66 ? 6 DC A OP1 1 ATOM 105 O OP2 . DC A 1 6 ? 1.992 19.356 2.350 1.00 10.71 ? 6 DC A OP2 1 ATOM 106 O "O5'" . DC A 1 6 ? 0.549 17.443 3.102 1.00 11.91 ? 6 DC A "O5'" 1 ATOM 107 C "C5'" . DC A 1 6 ? -0.638 16.749 3.426 1.00 11.39 ? 6 DC A "C5'" 1 ATOM 108 C "C4'" . DC A 1 6 ? -0.235 15.867 4.564 1.00 10.88 ? 6 DC A "C4'" 1 ATOM 109 O "O4'" . DC A 1 6 ? 1.127 15.349 4.285 1.00 10.47 ? 6 DC A "O4'" 1 ATOM 110 C "C3'" . DC A 1 6 ? -0.080 16.565 5.890 1.00 10.87 ? 6 DC A "C3'" 1 ATOM 111 O "O3'" . DC A 1 6 ? -1.330 16.890 6.510 1.00 12.09 ? 6 DC A "O3'" 1 ATOM 112 C "C2'" . DC A 1 6 ? 0.787 15.587 6.648 1.00 9.42 ? 6 DC A "C2'" 1 ATOM 113 C "C1'" . DC A 1 6 ? 1.710 15.016 5.559 1.00 9.49 ? 6 DC A "C1'" 1 ATOM 114 N N1 . DC A 1 6 ? 3.119 15.429 5.559 1.00 8.28 ? 6 DC A N1 1 ATOM 115 C C2 . DC A 1 6 ? 4.013 14.713 6.317 1.00 8.09 ? 6 DC A C2 1 ATOM 116 O O2 . DC A 1 6 ? 3.657 13.819 7.066 1.00 10.05 ? 6 DC A O2 1 ATOM 117 N N3 . DC A 1 6 ? 5.348 15.018 6.251 1.00 7.78 ? 6 DC A N3 1 ATOM 118 C C4 . DC A 1 6 ? 5.758 16.004 5.450 1.00 6.46 ? 6 DC A C4 1 ATOM 119 N N4 . DC A 1 6 ? 7.064 16.228 5.408 1.00 6.15 ? 6 DC A N4 1 ATOM 120 C C5 . DC A 1 6 ? 4.845 16.757 4.643 1.00 7.71 ? 6 DC A C5 1 ATOM 121 C C6 . DC A 1 6 ? 3.535 16.462 4.740 1.00 8.23 ? 6 DC A C6 1 ATOM 122 O "O5'" . DG B 1 1 ? 12.540 8.023 11.807 1.00 16.85 ? 7 DG B "O5'" 1 ATOM 123 C "C5'" . DG B 1 1 ? 12.154 9.349 12.206 1.00 15.56 ? 7 DG B "C5'" 1 ATOM 124 C "C4'" . DG B 1 1 ? 10.707 9.289 12.490 1.00 15.24 ? 7 DG B "C4'" 1 ATOM 125 O "O4'" . DG B 1 1 ? 10.153 10.540 12.822 1.00 14.98 ? 7 DG B "O4'" 1 ATOM 126 C "C3'" . DG B 1 1 ? 9.922 8.756 11.327 1.00 15.06 ? 7 DG B "C3'" 1 ATOM 127 O "O3'" . DG B 1 1 ? 9.908 7.355 11.423 1.00 16.98 ? 7 DG B "O3'" 1 ATOM 128 C "C2'" . DG B 1 1 ? 8.577 9.346 11.659 1.00 15.18 ? 7 DG B "C2'" 1 ATOM 129 C "C1'" . DG B 1 1 ? 8.928 10.717 12.092 1.00 14.94 ? 7 DG B "C1'" 1 ATOM 130 N N9 . DG B 1 1 ? 9.117 11.662 10.972 1.00 13.18 ? 7 DG B N9 1 ATOM 131 C C8 . DG B 1 1 ? 10.250 12.305 10.574 1.00 13.68 ? 7 DG B C8 1 ATOM 132 N N7 . DG B 1 1 ? 10.140 13.119 9.554 1.00 13.24 ? 7 DG B N7 1 ATOM 133 C C5 . DG B 1 1 ? 8.787 13.004 9.269 1.00 13.27 ? 7 DG B C5 1 ATOM 134 C C6 . DG B 1 1 ? 8.006 13.657 8.272 1.00 13.47 ? 7 DG B C6 1 ATOM 135 O O6 . DG B 1 1 ? 8.263 14.552 7.497 1.00 13.91 ? 7 DG B O6 1 ATOM 136 N N1 . DG B 1 1 ? 6.758 13.241 8.263 1.00 12.78 ? 7 DG B N1 1 ATOM 137 C C2 . DG B 1 1 ? 6.236 12.381 9.131 1.00 12.87 ? 7 DG B C2 1 ATOM 138 N N2 . DG B 1 1 ? 4.993 12.093 8.903 1.00 12.44 ? 7 DG B N2 1 ATOM 139 N N3 . DG B 1 1 ? 6.886 11.771 10.117 1.00 13.39 ? 7 DG B N3 1 ATOM 140 C C4 . DG B 1 1 ? 8.174 12.121 10.118 1.00 12.93 ? 7 DG B C4 1 HETATM 141 N N1 . 5CM B 1 2 ? 6.710 9.030 7.607 1.00 13.48 ? 8 5CM B N1 1 HETATM 142 C C2 . 5CM B 1 2 ? 6.157 9.902 6.703 1.00 12.47 ? 8 5CM B C2 1 HETATM 143 N N3 . 5CM B 1 2 ? 6.969 10.802 6.094 1.00 10.36 ? 8 5CM B N3 1 HETATM 144 C C4 . 5CM B 1 2 ? 8.273 10.797 6.357 1.00 10.32 ? 8 5CM B C4 1 HETATM 145 C C5 . 5CM B 1 2 ? 8.903 9.860 7.243 1.00 11.19 ? 8 5CM B C5 1 HETATM 146 C C5A . 5CM B 1 2 ? 10.447 9.789 7.420 1.00 11.10 ? 8 5CM B C5A 1 HETATM 147 C C6 . 5CM B 1 2 ? 8.070 9.008 7.874 1.00 12.86 ? 8 5CM B C6 1 HETATM 148 O O2 . 5CM B 1 2 ? 4.973 9.849 6.418 1.00 12.38 ? 8 5CM B O2 1 HETATM 149 N N4 . 5CM B 1 2 ? 8.937 11.793 5.794 1.00 11.84 ? 8 5CM B N4 1 HETATM 150 C "C1'" . 5CM B 1 2 ? 5.739 8.126 8.280 1.00 16.19 ? 8 5CM B "C1'" 1 HETATM 151 C "C2'" . 5CM B 1 2 ? 5.211 6.916 7.487 1.00 17.66 ? 8 5CM B "C2'" 1 HETATM 152 C "C3'" . 5CM B 1 2 ? 6.203 5.825 7.888 1.00 18.45 ? 8 5CM B "C3'" 1 HETATM 153 C "C4'" . 5CM B 1 2 ? 6.295 6.109 9.370 1.00 17.96 ? 8 5CM B "C4'" 1 HETATM 154 O "O4'" . 5CM B 1 2 ? 6.377 7.550 9.422 1.00 17.47 ? 8 5CM B "O4'" 1 HETATM 155 O "O3'" . 5CM B 1 2 ? 5.941 4.445 7.554 1.00 20.50 ? 8 5CM B "O3'" 1 HETATM 156 C "C5'" . 5CM B 1 2 ? 7.521 5.558 10.062 1.00 17.60 ? 8 5CM B "C5'" 1 HETATM 157 O "O5'" . 5CM B 1 2 ? 8.642 6.118 9.414 1.00 17.29 ? 8 5CM B "O5'" 1 HETATM 158 P P . 5CM B 1 2 ? 10.021 6.222 10.235 1.00 18.27 ? 8 5CM B P 1 HETATM 159 O OP1 . 5CM B 1 2 ? 10.109 4.939 10.977 1.00 18.30 ? 8 5CM B OP1 1 HETATM 160 O OP2 . 5CM B 1 2 ? 11.053 6.573 9.238 1.00 16.47 ? 8 5CM B OP2 1 ATOM 161 P P . DC B 1 3 ? 6.881 3.711 6.356 1.00 22.91 ? 9 DC B P 1 ATOM 162 O OP1 . DC B 1 3 ? 6.395 2.312 6.282 1.00 22.16 ? 9 DC B OP1 1 ATOM 163 O OP2 . DC B 1 3 ? 8.334 3.991 6.494 1.00 20.47 ? 9 DC B OP2 1 ATOM 164 O "O5'" . DC B 1 3 ? 6.307 4.546 5.059 1.00 21.43 ? 9 DC B "O5'" 1 ATOM 165 C "C5'" . DC B 1 3 ? 4.900 4.463 4.739 1.00 20.99 ? 9 DC B "C5'" 1 ATOM 166 C "C4'" . DC B 1 3 ? 4.492 5.473 3.659 1.00 19.22 ? 9 DC B "C4'" 1 ATOM 167 O "O4'" . DC B 1 3 ? 4.711 6.829 4.084 1.00 19.51 ? 9 DC B "O4'" 1 ATOM 168 C "C3'" . DC B 1 3 ? 5.225 5.392 2.367 1.00 18.07 ? 9 DC B "C3'" 1 ATOM 169 O "O3'" . DC B 1 3 ? 4.785 4.271 1.634 1.00 17.12 ? 9 DC B "O3'" 1 ATOM 170 C "C2'" . DC B 1 3 ? 4.852 6.709 1.745 1.00 17.89 ? 9 DC B "C2'" 1 ATOM 171 C "C1'" . DC B 1 3 ? 4.995 7.631 2.927 1.00 17.68 ? 9 DC B "C1'" 1 ATOM 172 N N1 . DC B 1 3 ? 6.292 8.309 3.042 1.00 17.04 ? 9 DC B N1 1 ATOM 173 C C2 . DC B 1 3 ? 6.503 9.386 2.202 1.00 17.17 ? 9 DC B C2 1 ATOM 174 O O2 . DC B 1 3 ? 5.666 9.800 1.397 1.00 19.67 ? 9 DC B O2 1 ATOM 175 N N3 . DC B 1 3 ? 7.707 10.010 2.230 1.00 16.71 ? 9 DC B N3 1 ATOM 176 C C4 . DC B 1 3 ? 8.687 9.564 3.024 1.00 16.25 ? 9 DC B C4 1 ATOM 177 N N4 . DC B 1 3 ? 9.849 10.179 2.877 1.00 16.32 ? 9 DC B N4 1 ATOM 178 C C5 . DC B 1 3 ? 8.480 8.474 3.922 1.00 16.13 ? 9 DC B C5 1 ATOM 179 C C6 . DC B 1 3 ? 7.249 7.879 3.906 1.00 16.60 ? 9 DC B C6 1 ATOM 180 P P . DG B 1 4 ? 5.834 3.526 0.619 1.00 18.05 ? 10 DG B P 1 ATOM 181 O OP1 . DG B 1 4 ? 5.115 2.298 0.207 1.00 18.67 ? 10 DG B OP1 1 ATOM 182 O OP2 . DG B 1 4 ? 7.196 3.426 1.195 1.00 16.94 ? 10 DG B OP2 1 ATOM 183 O "O5'" . DG B 1 4 ? 5.921 4.533 -0.630 1.00 16.53 ? 10 DG B "O5'" 1 ATOM 184 C "C5'" . DG B 1 4 ? 4.877 4.595 -1.588 1.00 14.30 ? 10 DG B "C5'" 1 ATOM 185 C "C4'" . DG B 1 4 ? 5.190 5.693 -2.564 1.00 13.43 ? 10 DG B "C4'" 1 ATOM 186 O "O4'" . DG B 1 4 ? 5.196 6.966 -1.926 1.00 12.91 ? 10 DG B "O4'" 1 ATOM 187 C "C3'" . DG B 1 4 ? 6.546 5.537 -3.234 1.00 13.42 ? 10 DG B "C3'" 1 ATOM 188 O "O3'" . DG B 1 4 ? 6.468 4.531 -4.242 1.00 14.83 ? 10 DG B "O3'" 1 ATOM 189 C "C2'" . DG B 1 4 ? 6.709 6.932 -3.782 1.00 13.16 ? 10 DG B "C2'" 1 ATOM 190 C "C1'" . DG B 1 4 ? 6.186 7.745 -2.613 1.00 11.82 ? 10 DG B "C1'" 1 ATOM 191 N N9 . DG B 1 4 ? 7.319 8.086 -1.786 1.00 10.35 ? 10 DG B N9 1 ATOM 192 C C8 . DG B 1 4 ? 7.824 7.469 -0.688 1.00 10.01 ? 10 DG B C8 1 ATOM 193 N N7 . DG B 1 4 ? 8.938 8.019 -0.246 1.00 9.47 ? 10 DG B N7 1 ATOM 194 C C5 . DG B 1 4 ? 9.162 9.094 -1.145 1.00 9.50 ? 10 DG B C5 1 ATOM 195 C C6 . DG B 1 4 ? 10.196 10.097 -1.217 1.00 8.87 ? 10 DG B C6 1 ATOM 196 O O6 . DG B 1 4 ? 11.139 10.296 -0.475 1.00 10.23 ? 10 DG B O6 1 ATOM 197 N N1 . DG B 1 4 ? 10.058 10.925 -2.258 1.00 7.71 ? 10 DG B N1 1 ATOM 198 C C2 . DG B 1 4 ? 9.090 10.820 -3.167 1.00 8.53 ? 10 DG B C2 1 ATOM 199 N N2 . DG B 1 4 ? 9.154 11.553 -4.237 1.00 7.67 ? 10 DG B N2 1 ATOM 200 N N3 . DG B 1 4 ? 8.084 9.962 -3.121 1.00 9.11 ? 10 DG B N3 1 ATOM 201 C C4 . DG B 1 4 ? 8.181 9.117 -2.076 1.00 9.50 ? 10 DG B C4 1 ATOM 202 P P . DG B 1 5 ? 7.733 3.607 -4.640 1.00 14.56 ? 11 DG B P 1 ATOM 203 O OP1 . DG B 1 5 ? 7.156 2.598 -5.541 1.00 14.51 ? 11 DG B OP1 1 ATOM 204 O OP2 . DG B 1 5 ? 8.486 3.205 -3.429 1.00 12.06 ? 11 DG B OP2 1 ATOM 205 O "O5'" . DG B 1 5 ? 8.603 4.695 -5.533 1.00 13.04 ? 11 DG B "O5'" 1 ATOM 206 C "C5'" . DG B 1 5 ? 8.082 5.118 -6.797 1.00 10.71 ? 11 DG B "C5'" 1 ATOM 207 C "C4'" . DG B 1 5 ? 8.875 6.319 -7.336 1.00 9.66 ? 11 DG B "C4'" 1 ATOM 208 O "O4'" . DG B 1 5 ? 8.932 7.320 -6.322 1.00 7.49 ? 11 DG B "O4'" 1 ATOM 209 C "C3'" . DG B 1 5 ? 10.348 6.141 -7.615 1.00 8.45 ? 11 DG B "C3'" 1 ATOM 210 O "O3'" . DG B 1 5 ? 10.655 5.489 -8.825 1.00 8.25 ? 11 DG B "O3'" 1 ATOM 211 C "C2'" . DG B 1 5 ? 10.802 7.533 -7.712 1.00 7.64 ? 11 DG B "C2'" 1 ATOM 212 C "C1'" . DG B 1 5 ? 10.041 8.131 -6.596 1.00 7.32 ? 11 DG B "C1'" 1 ATOM 213 N N9 . DG B 1 5 ? 10.767 8.196 -5.375 1.00 6.84 ? 11 DG B N9 1 ATOM 214 C C8 . DG B 1 5 ? 10.606 7.431 -4.271 1.00 7.07 ? 11 DG B C8 1 ATOM 215 N N7 . DG B 1 5 ? 11.397 7.748 -3.288 1.00 7.57 ? 11 DG B N7 1 ATOM 216 C C5 . DG B 1 5 ? 12.178 8.808 -3.796 1.00 7.72 ? 11 DG B C5 1 ATOM 217 C C6 . DG B 1 5 ? 13.276 9.566 -3.255 1.00 8.36 ? 11 DG B C6 1 ATOM 218 O O6 . DG B 1 5 ? 13.872 9.563 -2.193 1.00 10.65 ? 11 DG B O6 1 ATOM 219 N N1 . DG B 1 5 ? 13.755 10.494 -4.110 1.00 8.30 ? 11 DG B N1 1 ATOM 220 C C2 . DG B 1 5 ? 13.292 10.722 -5.327 1.00 6.98 ? 11 DG B C2 1 ATOM 221 N N2 . DG B 1 5 ? 13.873 11.713 -5.951 1.00 7.30 ? 11 DG B N2 1 ATOM 222 N N3 . DG B 1 5 ? 12.295 10.043 -5.896 1.00 6.87 ? 11 DG B N3 1 ATOM 223 C C4 . DG B 1 5 ? 11.773 9.097 -5.075 1.00 7.64 ? 11 DG B C4 1 ATOM 224 P P . DC B 1 6 ? 11.891 4.334 -8.851 1.00 8.89 ? 12 DC B P 1 ATOM 225 O OP1 . DC B 1 6 ? 11.620 3.577 -10.091 1.00 9.44 ? 12 DC B OP1 1 ATOM 226 O OP2 . DC B 1 6 ? 12.068 3.596 -7.546 1.00 7.38 ? 12 DC B OP2 1 ATOM 227 O "O5'" . DC B 1 6 ? 13.215 5.232 -9.077 1.00 8.03 ? 12 DC B "O5'" 1 ATOM 228 C "C5'" . DC B 1 6 ? 13.330 5.946 -10.292 1.00 6.75 ? 12 DC B "C5'" 1 ATOM 229 C "C4'" . DC B 1 6 ? 14.392 6.936 -10.007 1.00 6.36 ? 12 DC B "C4'" 1 ATOM 230 O "O4'" . DC B 1 6 ? 14.025 7.678 -8.808 1.00 4.98 ? 12 DC B "O4'" 1 ATOM 231 C "C3'" . DC B 1 6 ? 15.755 6.386 -9.738 1.00 5.28 ? 12 DC B "C3'" 1 ATOM 232 O "O3'" . DC B 1 6 ? 16.327 5.766 -10.917 1.00 6.62 ? 12 DC B "O3'" 1 ATOM 233 C "C2'" . DC B 1 6 ? 16.371 7.637 -9.109 1.00 5.19 ? 12 DC B "C2'" 1 ATOM 234 C "C1'" . DC B 1 6 ? 15.231 8.237 -8.234 1.00 4.80 ? 12 DC B "C1'" 1 ATOM 235 N N1 . DC B 1 6 ? 15.201 7.884 -6.795 1.00 5.27 ? 12 DC B N1 1 ATOM 236 C C2 . DC B 1 6 ? 16.076 8.542 -5.958 1.00 5.18 ? 12 DC B C2 1 ATOM 237 O O2 . DC B 1 6 ? 16.766 9.463 -6.343 1.00 6.12 ? 12 DC B O2 1 ATOM 238 N N3 . DC B 1 6 ? 16.188 8.151 -4.658 1.00 7.14 ? 12 DC B N3 1 ATOM 239 C C4 . DC B 1 6 ? 15.419 7.174 -4.198 1.00 5.45 ? 12 DC B C4 1 ATOM 240 N N4 . DC B 1 6 ? 15.543 6.879 -2.917 1.00 6.95 ? 12 DC B N4 1 ATOM 241 C C5 . DC B 1 6 ? 14.468 6.511 -5.029 1.00 5.61 ? 12 DC B C5 1 ATOM 242 C C6 . DC B 1 6 ? 14.382 6.887 -6.321 1.00 4.30 ? 12 DC B C6 1 HETATM 243 O O . HOH C 2 . ? 8.050 17.870 0.795 1.00 39.01 ? 14 HOH A O 1 HETATM 244 O O . HOH C 2 . ? 10.624 16.122 2.215 1.00 18.41 ? 22 HOH A O 1 HETATM 245 O O . HOH C 2 . ? 7.399 19.079 3.710 1.00 46.22 ? 24 HOH A O 1 HETATM 246 O O . HOH C 2 . ? 12.069 21.156 -7.798 1.00 37.32 ? 25 HOH A O 1 HETATM 247 O O . HOH C 2 . ? -2.619 19.489 5.889 1.00 2.00 ? 26 HOH A O 1 HETATM 248 O O . HOH C 2 . ? 1.327 20.699 -1.752 1.00 24.76 ? 30 HOH A O 1 HETATM 249 O O . HOH C 2 . ? 10.366 14.148 4.872 1.00 32.38 ? 31 HOH A O 1 HETATM 250 O O . HOH C 2 . ? 2.874 22.648 -3.535 1.00 26.78 ? 32 HOH A O 1 HETATM 251 O O . HOH C 2 . ? 8.235 21.310 -7.364 1.00 55.72 ? 34 HOH A O 1 HETATM 252 O O . HOH C 2 . ? 10.405 23.780 -5.639 1.00 29.14 ? 37 HOH A O 1 HETATM 253 O O . HOH C 2 . ? 12.896 23.200 -4.086 1.00 23.24 ? 39 HOH A O 1 HETATM 254 O O . HOH C 2 . ? 18.358 9.064 3.524 1.00 53.20 ? 40 HOH A O 1 HETATM 255 O O . HOH C 2 . ? 6.314 21.860 -3.546 1.00 54.34 ? 41 HOH A O 1 HETATM 256 O O . HOH D 2 . ? 5.389 -0.204 2.338 1.00 2.00 ? 13 HOH B O 1 HETATM 257 O O . HOH D 2 . ? 4.298 8.392 11.447 1.00 22.34 ? 15 HOH B O 1 HETATM 258 O O . HOH D 2 . ? 6.591 11.797 -5.561 1.00 32.81 ? 16 HOH B O 1 HETATM 259 O O . HOH D 2 . ? 11.949 7.616 4.972 1.00 42.06 ? 17 HOH B O 1 HETATM 260 O O . HOH D 2 . ? 15.132 3.256 -12.468 1.00 9.26 ? 18 HOH B O 1 HETATM 261 O O . HOH D 2 . ? 9.760 5.901 6.815 1.00 32.42 ? 19 HOH B O 1 HETATM 262 O O . HOH D 2 . ? 15.172 7.378 12.692 1.00 21.07 ? 20 HOH B O 1 HETATM 263 O O . HOH D 2 . ? 8.868 0.018 8.564 1.00 14.02 ? 21 HOH B O 1 HETATM 264 O O . HOH D 2 . ? 16.460 4.738 -0.462 1.00 41.06 ? 23 HOH B O 1 HETATM 265 O O . HOH D 2 . ? 12.938 5.152 10.255 1.00 38.77 ? 27 HOH B O 1 HETATM 266 O O . HOH D 2 . ? 12.987 8.275 9.083 1.00 34.43 ? 28 HOH B O 1 HETATM 267 O O . HOH D 2 . ? 14.372 2.286 -6.076 1.00 33.79 ? 29 HOH B O 1 HETATM 268 O O . HOH D 2 . ? 19.450 11.494 -9.762 0.50 94.34 ? 33 HOH B O 1 HETATM 269 O O . HOH D 2 . ? 18.191 5.749 1.665 1.00 33.53 ? 35 HOH B O 1 HETATM 270 O O . HOH D 2 . ? 16.704 12.163 -9.506 1.00 65.65 ? 36 HOH B O 1 HETATM 271 O O . HOH D 2 . ? 8.395 0.408 3.102 1.00 20.04 ? 38 HOH B O 1 HETATM 272 O O . HOH D 2 . ? 11.327 3.830 -3.877 1.00 47.07 ? 42 HOH B O 1 HETATM 273 O O . HOH D 2 . ? 19.902 5.524 4.528 1.00 45.69 ? 43 HOH B O 1 #