data_28DN # _entry.id 28DN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 28DN pdb_000028dn 10.2210/pdb28dn/pdb RCSB ADH023 ? ? WWPDB D_1000177702 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1991-07-15 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 28DN _pdbx_database_status.recvd_initial_deposition_date 1990-05-03 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Courseille, C.' 1 'Dautant, A.' 2 'Hospital, M.' 3 ;Langlois D'Estaintot, B. ; 4 'Precigoux, G.' 5 'Molko, D.' 6 'Teoule, R.' 7 # _citation.id primary _citation.title 'Crystal Structure Analysis of an A(DNA) Octamer d(GTACGTAC)' _citation.journal_abbrev 'Acta Crystallogr.,Sect.A' _citation.journal_volume 46 _citation.page_first Fc9 _citation.page_last Fc12 _citation.year 1990 _citation.journal_id_ASTM ACACEQ _citation.country DK _citation.journal_id_ISSN 0108-7673 _citation.journal_id_CSD 0621 _citation.book_publisher ? _citation.pdbx_database_id_PubMed -1 _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Courseille, C.' 1 ? primary 'Dautant, A.' 2 ? primary 'Hospital, M.' 3 ? primary ;Langlois D'Estaintot, B. ; 4 ? primary 'Precigoux, G.' 5 ? primary 'Molko, D.' 6 ? primary 'Teoule, R.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*TP*AP*CP*GP*TP*AP*C)-3') ; 2426.617 1 ? ? ? ? 2 water nat water 18.015 56 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DT)(DA)(DC)(DG)(DT)(DA)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GTACGTAC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DT n 1 3 DA n 1 4 DC n 1 5 DG n 1 6 DT n 1 7 DA n 1 8 DC n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 DT 2 2 2 DT T A . n A 1 3 DA 3 3 3 DA A A . n A 1 4 DC 4 4 4 DC C A . n A 1 5 DG 5 5 5 DG G A . n A 1 6 DT 6 6 6 DT T A . n A 1 7 DA 7 7 7 DA A A . n A 1 8 DC 8 8 8 DC C A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 9 9 HOH HOH A . B 2 HOH 2 10 10 HOH HOH A . B 2 HOH 3 11 11 HOH HOH A . B 2 HOH 4 12 12 HOH HOH A . B 2 HOH 5 13 13 HOH HOH A . B 2 HOH 6 14 14 HOH HOH A . B 2 HOH 7 15 15 HOH HOH A . B 2 HOH 8 16 16 HOH HOH A . B 2 HOH 9 17 17 HOH HOH A . B 2 HOH 10 18 18 HOH HOH A . B 2 HOH 11 19 19 HOH HOH A . B 2 HOH 12 20 20 HOH HOH A . B 2 HOH 13 21 21 HOH HOH A . B 2 HOH 14 22 22 HOH HOH A . B 2 HOH 15 23 23 HOH HOH A . B 2 HOH 16 24 24 HOH HOH A . B 2 HOH 17 25 25 HOH HOH A . B 2 HOH 18 26 26 HOH HOH A . B 2 HOH 19 27 27 HOH HOH A . B 2 HOH 20 28 28 HOH HOH A . B 2 HOH 21 29 29 HOH HOH A . B 2 HOH 22 30 30 HOH HOH A . B 2 HOH 23 31 31 HOH HOH A . B 2 HOH 24 32 32 HOH HOH A . B 2 HOH 25 33 33 HOH HOH A . B 2 HOH 26 34 34 HOH HOH A . B 2 HOH 27 35 35 HOH HOH A . B 2 HOH 28 36 36 HOH HOH A . B 2 HOH 29 37 37 HOH HOH A . B 2 HOH 30 38 38 HOH HOH A . B 2 HOH 31 39 39 HOH HOH A . B 2 HOH 32 40 40 HOH HOH A . B 2 HOH 33 41 41 HOH HOH A . B 2 HOH 34 42 42 HOH HOH A . B 2 HOH 35 43 43 HOH HOH A . B 2 HOH 36 44 44 HOH HOH A . B 2 HOH 37 45 45 HOH HOH A . B 2 HOH 38 46 46 HOH HOH A . B 2 HOH 39 47 47 HOH HOH A . B 2 HOH 40 48 48 HOH HOH A . B 2 HOH 41 49 49 HOH HOH A . B 2 HOH 42 50 50 HOH HOH A . B 2 HOH 43 51 51 HOH HOH A . B 2 HOH 44 52 52 HOH HOH A . B 2 HOH 45 53 53 HOH HOH A . B 2 HOH 46 54 54 HOH HOH A . B 2 HOH 47 55 55 HOH HOH A . B 2 HOH 48 56 56 HOH HOH A . B 2 HOH 49 57 57 HOH HOH A . B 2 HOH 50 58 58 HOH HOH A . B 2 HOH 51 59 59 HOH HOH A . B 2 HOH 52 60 60 HOH HOH A . B 2 HOH 53 61 61 HOH HOH A . B 2 HOH 54 62 62 HOH HOH A . B 2 HOH 55 63 63 HOH HOH A . B 2 HOH 56 64 64 HOH HOH A . # _software.name X-PLOR _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 28DN _cell.length_a 42.500 _cell.length_b 42.500 _cell.length_c 24.790 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 28DN _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 # _exptl.entry_id 28DN _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.31 _exptl_crystal.density_percent_sol 46.67 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293.00 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.00 _exptl_crystal_grow.pdbx_details 'pH 6.00, VAPOR DIFFUSION, SITTING DROP, temperature 293.00K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 'NA CACODYLATE' ? ? ? 1 4 1 MGCL2 ? ? ? 1 5 1 SPERMINE ? ? ? 1 6 2 WATER ? ? ? 1 7 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 279.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type NICOLET _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 28DN _reflns.observed_criterion_sigma_I 1.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 2.400 _reflns.number_obs 894 _reflns.number_all 2682 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 28DN _refine.ls_number_reflns_obs 973 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I 1.000 _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 2.400 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1700000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1700000 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 161 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 56 _refine_hist.number_atoms_total 217 _refine_hist.d_res_high 2.400 _refine_hist.d_res_low . # _database_PDB_matrix.entry_id 28DN _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 28DN _struct.title 'CRYSTAL STRUCTURE ANALYSIS OF AN A(DNA) OCTAMER D(GTACGTAC)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 28DN _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'A-DNA, DOUBLE HELIX, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 28DN _struct_ref.pdbx_db_accession 28DN _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 28DN _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 8 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 28DN _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 8 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 N3 ? ? ? 1_555 A DA 7 N1 ? ? A DT 2 A DA 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 2 O4 ? ? ? 1_555 A DA 7 N6 ? ? A DT 2 A DA 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 3 N1 ? ? ? 1_555 A DT 6 N3 ? ? A DA 3 A DT 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N6 ? ? ? 1_555 A DT 6 O4 ? ? A DA 3 A DT 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 4 N3 ? ? ? 1_555 A DG 5 N1 ? ? A DC 4 A DG 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 4 N4 ? ? ? 1_555 A DG 5 O6 ? ? A DC 4 A DG 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 O2 ? ? ? 1_555 A DG 5 N2 ? ? A DC 4 A DG 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 5 N1 ? ? ? 1_555 A DC 4 N3 ? ? A DG 5 A DC 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DC 4 O2 ? ? A DG 5 A DC 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 O6 ? ? ? 1_555 A DC 4 N4 ? ? A DG 5 A DC 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 6 N3 ? ? ? 1_555 A DA 3 N1 ? ? A DT 6 A DA 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 6 O4 ? ? ? 1_555 A DA 3 N6 ? ? A DT 6 A DA 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 7 N1 ? ? ? 1_555 A DT 2 N3 ? ? A DA 7 A DT 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 7 N6 ? ? ? 1_555 A DT 2 O4 ? ? A DA 7 A DT 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C6 A DG 1 ? ? N1 A DG 1 ? ? 1.342 1.391 -0.049 0.007 N 2 1 C5 A DT 2 ? ? C6 A DT 2 ? ? 1.452 1.339 0.113 0.007 N 3 1 C6 A DG 5 ? ? N1 A DG 5 ? ? 1.343 1.391 -0.048 0.007 N 4 1 N3 A DT 6 ? ? C4 A DT 6 ? ? 1.330 1.382 -0.052 0.008 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C1'" A DG 1 ? ? "O4'" A DG 1 ? ? "C4'" A DG 1 ? ? 114.51 110.30 4.21 0.70 N 2 1 N3 A DG 1 ? ? C4 A DG 1 ? ? C5 A DG 1 ? ? 124.90 128.60 -3.70 0.50 N 3 1 "O4'" A DT 2 ? ? "C4'" A DT 2 ? ? "C3'" A DT 2 ? ? 100.05 104.50 -4.45 0.40 N 4 1 "C3'" A DT 2 ? ? "C2'" A DT 2 ? ? "C1'" A DT 2 ? ? 97.50 102.40 -4.90 0.80 N 5 1 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 113.63 108.30 5.33 0.30 N 6 1 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? "C2'" A DA 3 ? ? 100.73 105.90 -5.17 0.80 N 7 1 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 113.76 108.30 5.46 0.30 N 8 1 "O5'" A DC 4 ? ? "C5'" A DC 4 ? ? "C4'" A DC 4 ? ? 103.79 109.40 -5.61 0.80 N 9 1 "O4'" A DC 4 ? ? "C4'" A DC 4 ? ? "C3'" A DC 4 ? ? 91.33 104.50 -13.17 0.40 N 10 1 "C1'" A DC 4 ? ? "O4'" A DC 4 ? ? "C4'" A DC 4 ? ? 115.18 110.30 4.88 0.70 N 11 1 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? "C2'" A DC 4 ? ? 100.53 105.90 -5.37 0.80 N 12 1 N3 A DC 4 ? ? C4 A DC 4 ? ? C5 A DC 4 ? ? 119.10 121.90 -2.80 0.40 N 13 1 N3 A DC 4 ? ? C2 A DC 4 ? ? O2 A DC 4 ? ? 117.29 121.90 -4.61 0.70 N 14 1 "O5'" A DG 5 ? ? "C5'" A DG 5 ? ? "C4'" A DG 5 ? ? 104.31 109.40 -5.09 0.80 N 15 1 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 115.85 108.30 7.55 0.30 N 16 1 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 115.62 108.30 7.32 0.30 N 17 1 N1 A DT 6 ? ? C2 A DT 6 ? ? N3 A DT 6 ? ? 118.77 114.60 4.17 0.60 N 18 1 C4 A DT 6 ? ? C5 A DT 6 ? ? C6 A DT 6 ? ? 122.33 118.00 4.33 0.60 N 19 1 C5 A DT 6 ? ? C6 A DT 6 ? ? N1 A DT 6 ? ? 118.57 123.70 -5.13 0.60 N 20 1 P A DC 8 ? ? "O5'" A DC 8 ? ? "C5'" A DC 8 ? ? 111.01 120.90 -9.89 1.60 N 21 1 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 113.97 108.30 5.67 0.30 N # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id "C3'" _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id A _pdbx_validate_chiral.auth_comp_id DG _pdbx_validate_chiral.auth_seq_id 1 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details 'WRONG HAND' _pdbx_validate_chiral.omega . # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DT A 2 ? ? 0.158 'SIDE CHAIN' 2 1 DA A 3 ? ? 0.082 'SIDE CHAIN' 3 1 DC A 4 ? ? 0.095 'SIDE CHAIN' # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 44 ? B HOH . 2 1 A HOH 50 ? B HOH . 3 1 A HOH 52 ? B HOH . 4 1 A HOH 60 ? B HOH . # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # _ndb_struct_conf_na.entry_id 28DN _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 A DC 8 7_555 -0.398 -0.172 0.357 1.178 -15.030 -2.332 1 A_DG1:DC8_A A 1 ? A 8 ? 19 1 1 A DT 2 1_555 A DA 7 7_555 -0.264 -0.155 0.692 -9.079 -2.631 -1.467 2 A_DT2:DA7_A A 2 ? A 7 ? 20 1 1 A DA 3 1_555 A DT 6 7_555 0.578 -0.067 0.266 3.583 -17.995 -1.420 3 A_DA3:DT6_A A 3 ? A 6 ? 20 1 1 A DC 4 1_555 A DG 5 7_555 -0.251 -0.045 -0.167 1.177 -7.310 -1.078 4 A_DC4:DG5_A A 4 ? A 5 ? 19 1 1 A DG 5 1_555 A DC 4 7_555 0.251 -0.045 -0.167 -1.177 -7.311 -1.078 5 A_DG5:DC4_A A 5 ? A 4 ? 19 1 1 A DT 6 1_555 A DA 3 7_555 -0.578 -0.067 0.266 -3.583 -17.995 -1.420 6 A_DT6:DA3_A A 6 ? A 3 ? 20 1 1 A DA 7 1_555 A DT 2 7_555 0.264 -0.155 0.692 9.079 -2.631 -1.467 7 A_DA7:DT2_A A 7 ? A 2 ? 20 1 1 A DC 8 1_555 A DG 1 7_555 0.398 -0.172 0.357 -1.178 -15.030 -2.332 8 A_DC8:DG1_A A 8 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 A DC 8 7_555 A DT 2 1_555 A DA 7 7_555 0.370 -1.496 3.768 -2.826 8.357 30.373 -4.433 -1.249 3.207 15.543 5.256 31.599 1 AA_DG1DT2:DA7DC8_AA A 1 ? A 8 ? A 2 ? A 7 ? 1 A DT 2 1_555 A DA 7 7_555 A DA 3 1_555 A DT 6 7_555 -0.403 -1.699 2.724 4.469 7.774 40.268 -3.068 0.949 2.315 11.125 -6.396 41.213 2 AA_DT2DA3:DT6DA7_AA A 2 ? A 7 ? A 3 ? A 6 ? 1 A DA 3 1_555 A DT 6 7_555 A DC 4 1_555 A DG 5 7_555 0.530 -1.550 3.526 4.578 2.284 29.157 -3.552 0.001 3.438 4.493 -9.005 29.593 3 AA_DA3DC4:DG5DT6_AA A 3 ? A 6 ? A 4 ? A 5 ? 1 A DC 4 1_555 A DG 5 7_555 A DG 5 1_555 A DC 4 7_555 0.000 -1.902 3.535 0.000 9.685 24.046 -6.853 0.000 2.585 22.131 0.000 25.896 4 AA_DC4DG5:DC4DG5_AA A 4 ? A 5 ? A 5 ? A 4 ? 1 A DG 5 1_555 A DC 4 7_555 A DT 6 1_555 A DA 3 7_555 -0.530 -1.550 3.526 -4.578 2.284 29.157 -3.552 -0.001 3.438 4.493 9.005 29.593 5 AA_DG5DT6:DA3DC4_AA A 5 ? A 4 ? A 6 ? A 3 ? 1 A DT 6 1_555 A DA 3 7_555 A DA 7 1_555 A DT 2 7_555 0.403 -1.699 2.724 -4.469 7.774 40.268 -3.068 -0.949 2.315 11.125 6.396 41.213 6 AA_DT6DA7:DT2DA3_AA A 6 ? A 3 ? A 7 ? A 2 ? 1 A DA 7 1_555 A DT 2 7_555 A DC 8 1_555 A DG 1 7_555 -0.370 -1.496 3.768 2.826 8.357 30.373 -4.433 1.249 3.207 15.543 -5.256 31.599 7 AA_DA7DC8:DG1DT2_AA A 7 ? A 2 ? A 8 ? A 1 ? # _atom_sites.entry_id 28DN _atom_sites.fract_transf_matrix[1][1] 0.023529 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023529 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.040339 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DG A 1 1 ? 7.092 -1.991 -5.035 1.00 3.55 ? 1 DG A "O5'" 1 ATOM 2 C "C5'" . DG A 1 1 ? 6.854 -3.359 -4.645 1.00 4.21 ? 1 DG A "C5'" 1 ATOM 3 C "C4'" . DG A 1 1 ? 8.104 -4.156 -4.246 1.00 4.70 ? 1 DG A "C4'" 1 ATOM 4 O "O4'" . DG A 1 1 ? 9.233 -3.833 -5.053 1.00 4.87 ? 1 DG A "O4'" 1 ATOM 5 C "C3'" . DG A 1 1 ? 8.513 -3.863 -2.801 1.00 5.06 ? 1 DG A "C3'" 1 ATOM 6 O "O3'" . DG A 1 1 ? 7.687 -2.872 -2.145 1.00 5.32 ? 1 DG A "O3'" 1 ATOM 7 C "C2'" . DG A 1 1 ? 10.006 -3.477 -2.855 1.00 4.88 ? 1 DG A "C2'" 1 ATOM 8 C "C1'" . DG A 1 1 ? 10.471 -3.656 -4.314 1.00 4.79 ? 1 DG A "C1'" 1 ATOM 9 N N9 . DG A 1 1 ? 11.115 -2.406 -4.815 1.00 4.58 ? 1 DG A N9 1 ATOM 10 C C8 . DG A 1 1 ? 10.464 -1.415 -5.472 1.00 4.06 ? 1 DG A C8 1 ATOM 11 N N7 . DG A 1 1 ? 11.197 -0.366 -5.689 1.00 5.12 ? 1 DG A N7 1 ATOM 12 C C5 . DG A 1 1 ? 12.432 -0.645 -5.130 1.00 5.00 ? 1 DG A C5 1 ATOM 13 C C6 . DG A 1 1 ? 13.625 0.134 -5.091 1.00 5.40 ? 1 DG A C6 1 ATOM 14 O O6 . DG A 1 1 ? 13.825 1.279 -5.483 1.00 6.06 ? 1 DG A O6 1 ATOM 15 N N1 . DG A 1 1 ? 14.650 -0.515 -4.518 1.00 5.75 ? 1 DG A N1 1 ATOM 16 C C2 . DG A 1 1 ? 14.580 -1.788 -4.011 1.00 5.58 ? 1 DG A C2 1 ATOM 17 N N2 . DG A 1 1 ? 15.685 -2.230 -3.420 1.00 5.93 ? 1 DG A N2 1 ATOM 18 N N3 . DG A 1 1 ? 13.475 -2.546 -4.057 1.00 5.23 ? 1 DG A N3 1 ATOM 19 C C4 . DG A 1 1 ? 12.414 -1.921 -4.629 1.00 4.88 ? 1 DG A C4 1 ATOM 20 P P . DT A 1 2 ? 7.736 -2.608 -0.578 1.00 5.49 ? 2 DT A P 1 ATOM 21 O OP1 . DT A 1 2 ? 6.851 -3.646 -0.009 1.00 6.30 ? 2 DT A OP1 1 ATOM 22 O OP2 . DT A 1 2 ? 7.396 -1.225 -0.218 1.00 5.85 ? 2 DT A OP2 1 ATOM 23 O "O5'" . DT A 1 2 ? 9.287 -2.815 -0.214 1.00 5.61 ? 2 DT A "O5'" 1 ATOM 24 C "C5'" . DT A 1 2 ? 9.569 -2.712 1.170 1.00 5.16 ? 2 DT A "C5'" 1 ATOM 25 C "C4'" . DT A 1 2 ? 11.063 -2.735 1.337 1.00 5.53 ? 2 DT A "C4'" 1 ATOM 26 O "O4'" . DT A 1 2 ? 11.757 -2.668 0.098 1.00 5.35 ? 2 DT A "O4'" 1 ATOM 27 C "C3'" . DT A 1 2 ? 11.447 -1.402 1.926 1.00 6.00 ? 2 DT A "C3'" 1 ATOM 28 O "O3'" . DT A 1 2 ? 11.432 -1.562 3.316 1.00 6.66 ? 2 DT A "O3'" 1 ATOM 29 C "C2'" . DT A 1 2 ? 12.927 -1.312 1.580 1.00 5.57 ? 2 DT A "C2'" 1 ATOM 30 C "C1'" . DT A 1 2 ? 12.810 -1.676 0.116 1.00 5.05 ? 2 DT A "C1'" 1 ATOM 31 N N1 . DT A 1 2 ? 12.492 -0.457 -0.667 1.00 4.38 ? 2 DT A N1 1 ATOM 32 C C2 . DT A 1 2 ? 13.496 0.468 -0.796 1.00 4.05 ? 2 DT A C2 1 ATOM 33 O O2 . DT A 1 2 ? 14.652 0.117 -0.672 1.00 3.79 ? 2 DT A O2 1 ATOM 34 N N3 . DT A 1 2 ? 13.223 1.535 -1.559 1.00 4.18 ? 2 DT A N3 1 ATOM 35 C C4 . DT A 1 2 ? 12.161 1.799 -2.350 1.00 4.34 ? 2 DT A C4 1 ATOM 36 O O4 . DT A 1 2 ? 12.061 2.875 -2.957 1.00 4.87 ? 2 DT A O4 1 ATOM 37 C C5 . DT A 1 2 ? 11.173 0.768 -2.346 1.00 4.14 ? 2 DT A C5 1 ATOM 38 C C7 . DT A 1 2 ? 9.772 1.118 -2.815 1.00 4.03 ? 2 DT A C7 1 ATOM 39 C C6 . DT A 1 2 ? 11.426 -0.407 -1.532 1.00 4.50 ? 2 DT A C6 1 ATOM 40 P P . DA A 1 3 ? 10.864 -0.484 4.316 1.00 7.24 ? 3 DA A P 1 ATOM 41 O OP1 . DA A 1 3 ? 10.130 -1.235 5.354 1.00 7.36 ? 3 DA A OP1 1 ATOM 42 O OP2 . DA A 1 3 ? 10.171 0.581 3.577 1.00 7.14 ? 3 DA A OP2 1 ATOM 43 O "O5'" . DA A 1 3 ? 12.187 0.156 4.975 1.00 7.35 ? 3 DA A "O5'" 1 ATOM 44 C "C5'" . DA A 1 3 ? 13.216 0.350 4.018 1.00 7.13 ? 3 DA A "C5'" 1 ATOM 45 C "C4'" . DA A 1 3 ? 14.468 0.868 4.730 1.00 6.78 ? 3 DA A "C4'" 1 ATOM 46 O "O4'" . DA A 1 3 ? 15.333 1.144 3.622 1.00 6.75 ? 3 DA A "O4'" 1 ATOM 47 C "C3'" . DA A 1 3 ? 14.155 2.214 5.337 1.00 6.60 ? 3 DA A "C3'" 1 ATOM 48 O "O3'" . DA A 1 3 ? 14.122 2.360 6.766 1.00 6.98 ? 3 DA A "O3'" 1 ATOM 49 C "C2'" . DA A 1 3 ? 15.280 3.081 4.812 1.00 6.56 ? 3 DA A "C2'" 1 ATOM 50 C "C1'" . DA A 1 3 ? 15.441 2.549 3.393 1.00 6.28 ? 3 DA A "C1'" 1 ATOM 51 N N9 . DA A 1 3 ? 14.434 3.079 2.437 1.00 5.49 ? 3 DA A N9 1 ATOM 52 C C8 . DA A 1 3 ? 13.115 2.733 2.245 1.00 5.59 ? 3 DA A C8 1 ATOM 53 N N7 . DA A 1 3 ? 12.527 3.350 1.252 1.00 5.17 ? 3 DA A N7 1 ATOM 54 C C5 . DA A 1 3 ? 13.542 4.147 0.725 1.00 4.94 ? 3 DA A C5 1 ATOM 55 C C6 . DA A 1 3 ? 13.539 5.186 -0.205 1.00 4.83 ? 3 DA A C6 1 ATOM 56 N N6 . DA A 1 3 ? 12.600 5.432 -1.130 1.00 4.69 ? 3 DA A N6 1 ATOM 57 N N1 . DA A 1 3 ? 14.614 5.977 -0.258 1.00 4.94 ? 3 DA A N1 1 ATOM 58 C C2 . DA A 1 3 ? 15.639 5.751 0.531 1.00 4.56 ? 3 DA A C2 1 ATOM 59 N N3 . DA A 1 3 ? 15.780 4.799 1.431 1.00 4.99 ? 3 DA A N3 1 ATOM 60 C C4 . DA A 1 3 ? 14.673 4.037 1.486 1.00 5.04 ? 3 DA A C4 1 ATOM 61 P P . DC A 1 4 ? 13.506 3.699 7.417 1.00 5.93 ? 4 DC A P 1 ATOM 62 O OP1 . DC A 1 4 ? 13.800 3.610 8.859 1.00 7.07 ? 4 DC A OP1 1 ATOM 63 O OP2 . DC A 1 4 ? 12.114 3.846 6.959 1.00 5.76 ? 4 DC A OP2 1 ATOM 64 O "O5'" . DC A 1 4 ? 14.301 4.949 6.799 1.00 5.79 ? 4 DC A "O5'" 1 ATOM 65 C "C5'" . DC A 1 4 ? 15.575 5.238 7.350 1.00 5.10 ? 4 DC A "C5'" 1 ATOM 66 C "C4'" . DC A 1 4 ? 16.011 6.507 6.615 1.00 4.83 ? 4 DC A "C4'" 1 ATOM 67 O "O4'" . DC A 1 4 ? 15.658 6.438 5.235 1.00 4.52 ? 4 DC A "O4'" 1 ATOM 68 C "C3'" . DC A 1 4 ? 14.983 7.595 6.860 1.00 5.20 ? 4 DC A "C3'" 1 ATOM 69 O "O3'" . DC A 1 4 ? 15.171 8.241 8.096 1.00 5.66 ? 4 DC A "O3'" 1 ATOM 70 C "C2'" . DC A 1 4 ? 15.284 8.612 5.768 1.00 4.73 ? 4 DC A "C2'" 1 ATOM 71 C "C1'" . DC A 1 4 ? 15.488 7.717 4.578 1.00 3.79 ? 4 DC A "C1'" 1 ATOM 72 N N1 . DC A 1 4 ? 14.269 7.692 3.755 1.00 2.79 ? 4 DC A N1 1 ATOM 73 C C2 . DC A 1 4 ? 14.190 8.410 2.564 1.00 2.09 ? 4 DC A C2 1 ATOM 74 O O2 . DC A 1 4 ? 14.875 9.400 2.431 1.00 2.00 ? 4 DC A O2 1 ATOM 75 N N3 . DC A 1 4 ? 13.074 8.316 1.793 1.00 2.00 ? 4 DC A N3 1 ATOM 76 C C4 . DC A 1 4 ? 12.071 7.512 2.173 1.00 2.00 ? 4 DC A C4 1 ATOM 77 N N4 . DC A 1 4 ? 11.047 7.324 1.355 1.00 2.00 ? 4 DC A N4 1 ATOM 78 C C5 . DC A 1 4 ? 12.317 6.517 3.170 1.00 2.57 ? 4 DC A C5 1 ATOM 79 C C6 . DC A 1 4 ? 13.287 6.813 4.080 1.00 2.81 ? 4 DC A C6 1 ATOM 80 P P . DG A 1 5 ? 14.357 9.523 8.572 1.00 6.27 ? 5 DG A P 1 ATOM 81 O OP1 . DG A 1 5 ? 14.995 9.878 9.867 1.00 6.91 ? 5 DG A OP1 1 ATOM 82 O OP2 . DG A 1 5 ? 12.920 9.237 8.497 1.00 5.95 ? 5 DG A OP2 1 ATOM 83 O "O5'" . DG A 1 5 ? 14.749 10.720 7.584 1.00 6.03 ? 5 DG A "O5'" 1 ATOM 84 C "C5'" . DG A 1 5 ? 13.753 11.736 7.474 1.00 4.92 ? 5 DG A "C5'" 1 ATOM 85 C "C4'" . DG A 1 5 ? 14.330 12.723 6.456 1.00 3.93 ? 5 DG A "C4'" 1 ATOM 86 O "O4'" . DG A 1 5 ? 14.336 12.013 5.229 1.00 3.02 ? 5 DG A "O4'" 1 ATOM 87 C "C3'" . DG A 1 5 ? 13.334 13.843 6.255 1.00 4.06 ? 5 DG A "C3'" 1 ATOM 88 O "O3'" . DG A 1 5 ? 13.639 15.033 6.957 1.00 4.74 ? 5 DG A "O3'" 1 ATOM 89 C "C2'" . DG A 1 5 ? 13.344 14.096 4.760 1.00 3.27 ? 5 DG A "C2'" 1 ATOM 90 C "C1'" . DG A 1 5 ? 13.575 12.682 4.222 1.00 2.99 ? 5 DG A "C1'" 1 ATOM 91 N N9 . DG A 1 5 ? 12.380 11.939 3.704 1.00 2.30 ? 5 DG A N9 1 ATOM 92 C C8 . DG A 1 5 ? 11.784 10.818 4.208 1.00 2.06 ? 5 DG A C8 1 ATOM 93 N N7 . DG A 1 5 ? 10.772 10.393 3.505 1.00 2.00 ? 5 DG A N7 1 ATOM 94 C C5 . DG A 1 5 ? 10.675 11.299 2.462 1.00 2.00 ? 5 DG A C5 1 ATOM 95 C C6 . DG A 1 5 ? 9.763 11.334 1.378 1.00 2.15 ? 5 DG A C6 1 ATOM 96 O O6 . DG A 1 5 ? 8.877 10.504 1.104 1.00 2.30 ? 5 DG A O6 1 ATOM 97 N N1 . DG A 1 5 ? 10.001 12.360 0.544 1.00 2.00 ? 5 DG A N1 1 ATOM 98 C C2 . DG A 1 5 ? 11.023 13.270 0.678 1.00 2.04 ? 5 DG A C2 1 ATOM 99 N N2 . DG A 1 5 ? 11.144 14.171 -0.306 1.00 2.00 ? 5 DG A N2 1 ATOM 100 N N3 . DG A 1 5 ? 11.889 13.252 1.701 1.00 2.00 ? 5 DG A N3 1 ATOM 101 C C4 . DG A 1 5 ? 11.657 12.235 2.561 1.00 2.00 ? 5 DG A C4 1 ATOM 102 P P . DT A 1 6 ? 12.602 16.191 7.306 1.00 4.98 ? 6 DT A P 1 ATOM 103 O OP1 . DT A 1 6 ? 13.424 17.139 8.067 1.00 4.61 ? 6 DT A OP1 1 ATOM 104 O OP2 . DT A 1 6 ? 11.405 15.593 7.925 1.00 5.13 ? 6 DT A OP2 1 ATOM 105 O "O5'" . DT A 1 6 ? 12.111 16.907 5.959 1.00 5.21 ? 6 DT A "O5'" 1 ATOM 106 C "C5'" . DT A 1 6 ? 13.071 17.832 5.422 1.00 5.57 ? 6 DT A "C5'" 1 ATOM 107 C "C4'" . DT A 1 6 ? 12.495 18.399 4.109 1.00 6.06 ? 6 DT A "C4'" 1 ATOM 108 O "O4'" . DT A 1 6 ? 12.309 17.307 3.172 1.00 5.89 ? 6 DT A "O4'" 1 ATOM 109 C "C3'" . DT A 1 6 ? 11.096 18.922 4.388 1.00 6.23 ? 6 DT A "C3'" 1 ATOM 110 O "O3'" . DT A 1 6 ? 10.942 20.320 4.680 1.00 6.45 ? 6 DT A "O3'" 1 ATOM 111 C "C2'" . DT A 1 6 ? 10.437 18.720 3.031 1.00 6.11 ? 6 DT A "C2'" 1 ATOM 112 C "C1'" . DT A 1 6 ? 11.048 17.426 2.528 1.00 5.59 ? 6 DT A "C1'" 1 ATOM 113 N N1 . DT A 1 6 ? 10.094 16.361 2.809 1.00 5.53 ? 6 DT A N1 1 ATOM 114 C C2 . DT A 1 6 ? 9.056 16.268 1.910 1.00 5.67 ? 6 DT A C2 1 ATOM 115 O O2 . DT A 1 6 ? 9.025 17.026 0.953 1.00 6.09 ? 6 DT A O2 1 ATOM 116 N N3 . DT A 1 6 ? 8.130 15.313 2.089 1.00 5.26 ? 6 DT A N3 1 ATOM 117 C C4 . DT A 1 6 ? 8.139 14.410 3.065 1.00 5.32 ? 6 DT A C4 1 ATOM 118 O O4 . DT A 1 6 ? 7.359 13.475 3.111 1.00 5.04 ? 6 DT A O4 1 ATOM 119 C C5 . DT A 1 6 ? 9.214 14.580 4.023 1.00 5.25 ? 6 DT A C5 1 ATOM 120 C C7 . DT A 1 6 ? 9.241 13.656 5.234 1.00 5.17 ? 6 DT A C7 1 ATOM 121 C C6 . DT A 1 6 ? 10.164 15.525 3.880 1.00 5.40 ? 6 DT A C6 1 ATOM 122 P P . DA A 1 7 ? 9.604 20.835 5.398 1.00 6.54 ? 7 DA A P 1 ATOM 123 O OP1 . DA A 1 7 ? 9.824 22.234 5.788 1.00 7.93 ? 7 DA A OP1 1 ATOM 124 O OP2 . DA A 1 7 ? 9.296 19.880 6.480 1.00 7.14 ? 7 DA A OP2 1 ATOM 125 O "O5'" . DA A 1 7 ? 8.349 20.831 4.401 1.00 6.23 ? 7 DA A "O5'" 1 ATOM 126 C "C5'" . DA A 1 7 ? 8.247 22.005 3.598 1.00 5.59 ? 7 DA A "C5'" 1 ATOM 127 C "C4'" . DA A 1 7 ? 7.124 21.737 2.583 1.00 4.95 ? 7 DA A "C4'" 1 ATOM 128 O "O4'" . DA A 1 7 ? 7.122 20.359 2.175 1.00 4.51 ? 7 DA A "O4'" 1 ATOM 129 C "C3'" . DA A 1 7 ? 5.829 21.878 3.314 1.00 5.13 ? 7 DA A "C3'" 1 ATOM 130 O "O3'" . DA A 1 7 ? 5.358 23.215 3.361 1.00 5.90 ? 7 DA A "O3'" 1 ATOM 131 C "C2'" . DA A 1 7 ? 4.891 20.949 2.544 1.00 4.80 ? 7 DA A "C2'" 1 ATOM 132 C "C1'" . DA A 1 7 ? 5.815 19.861 1.976 1.00 4.04 ? 7 DA A "C1'" 1 ATOM 133 N N9 . DA A 1 7 ? 5.710 18.560 2.662 1.00 3.70 ? 7 DA A N9 1 ATOM 134 C C8 . DA A 1 7 ? 6.489 18.064 3.674 1.00 3.12 ? 7 DA A C8 1 ATOM 135 N N7 . DA A 1 7 ? 6.173 16.843 4.004 1.00 3.39 ? 7 DA A N7 1 ATOM 136 C C5 . DA A 1 7 ? 5.123 16.503 3.172 1.00 2.95 ? 7 DA A C5 1 ATOM 137 C C6 . DA A 1 7 ? 4.274 15.411 3.124 1.00 3.49 ? 7 DA A C6 1 ATOM 138 N N6 . DA A 1 7 ? 4.364 14.322 3.893 1.00 4.01 ? 7 DA A N6 1 ATOM 139 N N1 . DA A 1 7 ? 3.246 15.479 2.283 1.00 3.52 ? 7 DA A N1 1 ATOM 140 C C2 . DA A 1 7 ? 3.078 16.545 1.533 1.00 3.21 ? 7 DA A C2 1 ATOM 141 N N3 . DA A 1 7 ? 3.806 17.635 1.487 1.00 3.31 ? 7 DA A N3 1 ATOM 142 C C4 . DA A 1 7 ? 4.826 17.541 2.355 1.00 3.30 ? 7 DA A C4 1 ATOM 143 P P . DC A 1 8 ? 4.297 23.633 4.463 1.00 6.26 ? 8 DC A P 1 ATOM 144 O OP1 . DC A 1 8 ? 4.596 25.024 4.795 1.00 7.16 ? 8 DC A OP1 1 ATOM 145 O OP2 . DC A 1 8 ? 4.388 22.566 5.463 1.00 7.02 ? 8 DC A OP2 1 ATOM 146 O "O5'" . DC A 1 8 ? 2.782 23.591 3.928 1.00 6.91 ? 8 DC A "O5'" 1 ATOM 147 C "C5'" . DC A 1 8 ? 2.714 23.003 2.636 1.00 7.47 ? 8 DC A "C5'" 1 ATOM 148 C "C4'" . DC A 1 8 ? 1.335 22.466 2.240 1.00 7.56 ? 8 DC A "C4'" 1 ATOM 149 O "O4'" . DC A 1 8 ? 1.512 21.050 2.078 1.00 7.88 ? 8 DC A "O4'" 1 ATOM 150 C "C3'" . DC A 1 8 ? 0.202 22.713 3.226 1.00 7.68 ? 8 DC A "C3'" 1 ATOM 151 O "O3'" . DC A 1 8 ? -1.016 22.993 2.517 1.00 8.71 ? 8 DC A "O3'" 1 ATOM 152 C "C2'" . DC A 1 8 ? -0.142 21.351 3.811 1.00 7.30 ? 8 DC A "C2'" 1 ATOM 153 C "C1'" . DC A 1 8 ? 0.578 20.344 2.920 1.00 7.02 ? 8 DC A "C1'" 1 ATOM 154 N N1 . DC A 1 8 ? 1.201 19.313 3.774 1.00 6.35 ? 8 DC A N1 1 ATOM 155 C C2 . DC A 1 8 ? 0.545 18.110 3.810 1.00 6.33 ? 8 DC A C2 1 ATOM 156 O O2 . DC A 1 8 ? -0.419 17.929 3.065 1.00 6.63 ? 8 DC A O2 1 ATOM 157 N N3 . DC A 1 8 ? 0.999 17.161 4.663 1.00 6.21 ? 8 DC A N3 1 ATOM 158 C C4 . DC A 1 8 ? 2.099 17.371 5.405 1.00 5.76 ? 8 DC A C4 1 ATOM 159 N N4 . DC A 1 8 ? 2.542 16.397 6.197 1.00 5.78 ? 8 DC A N4 1 ATOM 160 C C5 . DC A 1 8 ? 2.820 18.591 5.333 1.00 5.63 ? 8 DC A C5 1 ATOM 161 C C6 . DC A 1 8 ? 2.315 19.537 4.518 1.00 5.89 ? 8 DC A C6 1 HETATM 162 O O . HOH B 2 . ? 7.552 1.342 0.758 1.00 28.32 ? 9 HOH A O 1 HETATM 163 O O . HOH B 2 . ? 9.441 24.889 2.270 1.00 27.12 ? 10 HOH A O 1 HETATM 164 O O . HOH B 2 . ? 6.447 19.377 11.012 1.00 36.38 ? 11 HOH A O 1 HETATM 165 O O . HOH B 2 . ? 9.151 16.552 10.404 1.00 31.92 ? 12 HOH A O 1 HETATM 166 O O . HOH B 2 . ? 10.753 6.462 6.281 1.00 20.91 ? 13 HOH A O 1 HETATM 167 O O . HOH B 2 . ? 14.060 21.305 7.920 1.00 28.63 ? 14 HOH A O 1 HETATM 168 O O . HOH B 2 . ? 4.155 0.479 -8.513 1.00 68.56 ? 15 HOH A O 1 HETATM 169 O O . HOH B 2 . ? -6.422 25.802 1.138 1.00 38.75 ? 16 HOH A O 1 HETATM 170 O O . HOH B 2 . ? 16.334 12.601 10.508 1.00 9.96 ? 17 HOH A O 1 HETATM 171 O O . HOH B 2 . ? 6.398 1.484 7.086 1.00 49.51 ? 18 HOH A O 1 HETATM 172 O O . HOH B 2 . ? 5.899 3.333 0.825 1.00 14.62 ? 19 HOH A O 1 HETATM 173 O O . HOH B 2 . ? 11.759 29.219 7.431 1.00 18.41 ? 20 HOH A O 1 HETATM 174 O O . HOH B 2 . ? 12.505 11.357 13.554 1.00 18.71 ? 21 HOH A O 1 HETATM 175 O O . HOH B 2 . ? 6.084 -1.653 4.187 1.00 35.38 ? 22 HOH A O 1 HETATM 176 O O . HOH B 2 . ? 13.098 3.771 11.457 1.00 5.82 ? 23 HOH A O 1 HETATM 177 O O . HOH B 2 . ? 5.337 20.824 7.227 1.00 20.69 ? 24 HOH A O 1 HETATM 178 O O . HOH B 2 . ? 16.307 20.732 7.216 1.00 31.39 ? 25 HOH A O 1 HETATM 179 O O . HOH B 2 . ? 11.105 19.013 9.819 1.00 4.52 ? 26 HOH A O 1 HETATM 180 O O . HOH B 2 . ? 10.856 24.821 8.023 1.00 16.53 ? 27 HOH A O 1 HETATM 181 O O . HOH B 2 . ? 3.266 3.021 6.468 1.00 79.19 ? 28 HOH A O 1 HETATM 182 O O . HOH B 2 . ? 13.724 23.376 5.263 1.00 89.51 ? 29 HOH A O 1 HETATM 183 O O . HOH B 2 . ? 14.443 10.909 12.112 1.00 50.31 ? 30 HOH A O 1 HETATM 184 O O . HOH B 2 . ? 15.889 28.129 8.974 1.00 48.35 ? 31 HOH A O 1 HETATM 185 O O . HOH B 2 . ? -0.393 -0.836 -3.250 1.00 57.44 ? 32 HOH A O 1 HETATM 186 O O . HOH B 2 . ? 5.368 7.866 7.386 1.00 28.56 ? 33 HOH A O 1 HETATM 187 O O . HOH B 2 . ? 9.033 1.788 8.084 1.00 26.26 ? 34 HOH A O 1 HETATM 188 O O . HOH B 2 . ? 9.077 4.787 7.754 1.00 26.22 ? 35 HOH A O 1 HETATM 189 O O . HOH B 2 . ? 13.389 6.072 11.172 1.00 13.11 ? 36 HOH A O 1 HETATM 190 O O . HOH B 2 . ? 7.267 12.989 9.336 1.00 29.75 ? 37 HOH A O 1 HETATM 191 O O . HOH B 2 . ? 7.314 6.417 4.177 1.00 39.72 ? 38 HOH A O 1 HETATM 192 O O . HOH B 2 . ? 16.529 16.517 9.056 1.00 22.86 ? 39 HOH A O 1 HETATM 193 O O . HOH B 2 . ? 7.045 10.587 4.602 1.00 29.64 ? 40 HOH A O 1 HETATM 194 O O . HOH B 2 . ? 2.981 -0.696 1.367 1.00 20.76 ? 41 HOH A O 1 HETATM 195 O O . HOH B 2 . ? 4.841 1.733 5.067 1.00 29.17 ? 42 HOH A O 1 HETATM 196 O O . HOH B 2 . ? 9.100 3.518 0.595 1.00 23.71 ? 43 HOH A O 1 HETATM 197 O O . HOH B 2 . ? 18.875 18.875 12.392 0.50 36.95 ? 44 HOH A O 1 HETATM 198 O O . HOH B 2 . ? 10.813 24.942 4.864 1.00 51.73 ? 45 HOH A O 1 HETATM 199 O O . HOH B 2 . ? 10.931 24.589 0.468 1.00 64.67 ? 46 HOH A O 1 HETATM 200 O O . HOH B 2 . ? 6.724 -1.634 -7.434 1.00 17.61 ? 47 HOH A O 1 HETATM 201 O O . HOH B 2 . ? 9.643 10.531 8.071 1.00 22.77 ? 48 HOH A O 1 HETATM 202 O O . HOH B 2 . ? -1.516 17.668 0.367 1.00 14.92 ? 49 HOH A O 1 HETATM 203 O O . HOH B 2 . ? 16.613 25.886 6.198 0.50 56.51 ? 50 HOH A O 1 HETATM 204 O O . HOH B 2 . ? 16.847 19.143 11.120 1.00 32.00 ? 51 HOH A O 1 HETATM 205 O O . HOH B 2 . ? 14.819 14.819 12.394 0.50 41.61 ? 52 HOH A O 1 HETATM 206 O O . HOH B 2 . ? 4.170 0.808 -2.669 1.00 52.03 ? 53 HOH A O 1 HETATM 207 O O . HOH B 2 . ? 7.571 8.860 6.859 1.00 56.89 ? 54 HOH A O 1 HETATM 208 O O . HOH B 2 . ? -1.047 25.801 3.579 1.00 27.54 ? 55 HOH A O 1 HETATM 209 O O . HOH B 2 . ? 8.950 20.154 9.798 1.00 12.56 ? 56 HOH A O 1 HETATM 210 O O . HOH B 2 . ? 7.049 16.232 7.935 1.00 35.87 ? 57 HOH A O 1 HETATM 211 O O . HOH B 2 . ? -2.648 22.021 1.033 1.00 20.13 ? 58 HOH A O 1 HETATM 212 O O . HOH B 2 . ? 6.978 8.328 2.209 1.00 32.08 ? 59 HOH A O 1 HETATM 213 O O . HOH B 2 . ? 6.943 6.940 12.386 0.50 39.84 ? 60 HOH A O 1 HETATM 214 O O . HOH B 2 . ? 18.477 23.295 4.359 1.00 37.17 ? 61 HOH A O 1 HETATM 215 O O . HOH B 2 . ? -4.653 23.631 3.237 1.00 37.25 ? 62 HOH A O 1 HETATM 216 O O . HOH B 2 . ? 19.849 18.709 2.617 1.00 51.12 ? 63 HOH A O 1 HETATM 217 O O . HOH B 2 . ? 3.961 6.441 3.633 1.00 50.54 ? 64 HOH A O 1 #