0.019192
0.000000
0.000000
0.000000
0.019192
0.000000
0.000000
0.000000
0.005033
0.00000
0.00000
0.00000
Furukawa, H.
Singh, S.K.
Mancusso, R.
Gouaux, E.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
52.106
52.106
198.675
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Nature
NATUAS
0006
0028-0836
438
185
192
10.1038/nature04089
16281028
Subunit arrangement and function in NMDA receptors
2005
100
1
CCD
2003-10-09
ADSC QUANTUM 4
graphite
SINGLE WAVELENGTH
M
x-ray
1
0.9793
1.0
X4A
NSLS
0.9793
SYNCHROTRON
NSLS BEAMLINE X4A
construct of residues 401-539 and 661-802 of GB AAB58801
31852.391
N-methyl-D-aspartate receptor NMDAR2A subunit
S1S2 ligand-binding core
1
man
polymer
147.129
GLUTAMIC ACID
1
syn
non-polymer
18.015
water
316
nat
water
NMDA receptor NR2A subunit; NMDA receptor NMDAR2A subunit; glutamate receptor, ionotropic, N-methyl D-aspartate 2A
no
no
GPDDNHLSIVTLEEAPFVIVEDIDPLTETCVRNTVPCRKFVKINNSTNEGMNVKKCCKGFCIDILKKLSRTVKFTYDLYL
VTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETGISVMVSRGTQVTGLSDKKFQRPHDYSP
PFRFGTVPNGSTERNIRNNYPYMHQYMTRFNQRGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGYIFAT
TGYGIALQKGSPWKRQIDLALLQFVGDGEMEELETLWLTGICHN
GPDDNHLSIVTLEEAPFVIVEDIDPLTETCVRNTVPCRKFVKINNSTNEGMNVKKCCKGFCIDILKKLSRTVKFTYDLYL
VTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETGISVMVSRGTQVTGLSDKKFQRPHDYSP
PFRFGTVPNGSTERNIRNNYPYMHQYMTRFNQRGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGYIFAT
TGYGIALQKGSPWKRQIDLALLQFVGDGEMEELETLWLTGICHN
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Norway rat
Rattus
Escherichia
sample
2
140
10116
Rattus norvegicus
562
Escherichia coli
OrigamiB (DE3)
plasmid
pET22b
Norway rat
Rattus
Escherichia
sample
143
284
10116
Rattus norvegicus
562
Escherichia coli
OrigamiB (DE3)
plasmid
pET22b
1
2.117
42.
EVAPORATION
7
PEG 8000, HEPES, calcium acetate, pH 7, EVAPORATION, temperature 277K
277
entity_src_gen
software
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Source and taxonomy
1
0
2005-11-15
1
1
2008-04-30
1
2
2011-07-13
1
3
2017-07-26
Crystal Structure Of The Nr1 Ligand Binding Core In Complex With Glycine At 1.35 Angstroms Resolution
Crystal Structure of the NMDA receptor NR1 subunit and NR2A subunits
N
RCSB
Y
RCSB
2005-06-30
REL
REL
GLU
GLUTAMIC ACID
HOH
water
GLU
1001
2
GLU
GLU
1001
A
HOH
1
3
HOH
HOH
1002
A
HOH
2
3
HOH
HOH
1003
A
HOH
3
3
HOH
HOH
1004
A
HOH
4
3
HOH
HOH
1005
A
HOH
5
3
HOH
HOH
1006
A
HOH
6
3
HOH
HOH
1007
A
HOH
7
3
HOH
HOH
1008
A
HOH
8
3
HOH
HOH
1009
A
HOH
9
3
HOH
HOH
1010
A
HOH
10
3
HOH
HOH
1011
A
HOH
11
3
HOH
HOH
1012
A
HOH
12
3
HOH
HOH
1013
A
HOH
13
3
HOH
HOH
1014
A
HOH
14
3
HOH
HOH
1015
A
HOH
15
3
HOH
HOH
1016
A
HOH
16
3
HOH
HOH
1017
A
HOH
17
3
HOH
HOH
1018
A
HOH
18
3
HOH
HOH
1019
A
HOH
19
3
HOH
HOH
1020
A
HOH
20
3
HOH
HOH
1021
A
HOH
21
3
HOH
HOH
1022
A
HOH
22
3
HOH
HOH
1023
A
HOH
23
3
HOH
HOH
1024
A
HOH
24
3
HOH
HOH
1025
A
HOH
25
3
HOH
HOH
1026
A
HOH
26
3
HOH
HOH
1027
A
HOH
27
3
HOH
HOH
1028
A
HOH
28
3
HOH
HOH
1029
A
HOH
29
3
HOH
HOH
1030
A
HOH
30
3
HOH
HOH
1031
A
HOH
31
3
HOH
HOH
1032
A
HOH
32
3
HOH
HOH
1033
A
HOH
33
3
HOH
HOH
1034
A
HOH
34
3
HOH
HOH
1035
A
HOH
35
3
HOH
HOH
1036
A
HOH
36
3
HOH
HOH
1037
A
HOH
37
3
HOH
HOH
1038
A
HOH
38
3
HOH
HOH
1039
A
HOH
39
3
HOH
HOH
1040
A
HOH
40
3
HOH
HOH
1041
A
HOH
41
3
HOH
HOH
1042
A
HOH
42
3
HOH
HOH
1043
A
HOH
43
3
HOH
HOH
1044
A
HOH
44
3
HOH
HOH
1045
A
HOH
45
3
HOH
HOH
1046
A
HOH
46
3
HOH
HOH
1047
A
HOH
47
3
HOH
HOH
1048
A
HOH
48
3
HOH
HOH
1049
A
HOH
49
3
HOH
HOH
1050
A
HOH
50
3
HOH
HOH
1051
A
HOH
51
3
HOH
HOH
1052
A
HOH
52
3
HOH
HOH
1053
A
HOH
53
3
HOH
HOH
1054
A
HOH
54
3
HOH
HOH
1055
A
HOH
55
3
HOH
HOH
1056
A
HOH
56
3
HOH
HOH
1057
A
HOH
57
3
HOH
HOH
1058
A
HOH
58
3
HOH
HOH
1059
A
HOH
59
3
HOH
HOH
1060
A
HOH
60
3
HOH
HOH
1061
A
HOH
61
3
HOH
HOH
1062
A
HOH
62
3
HOH
HOH
1063
A
HOH
63
3
HOH
HOH
1064
A
HOH
64
3
HOH
HOH
1065
A
HOH
65
3
HOH
HOH
1066
A
HOH
66
3
HOH
HOH
1067
A
HOH
67
3
HOH
HOH
1068
A
HOH
68
3
HOH
HOH
1069
A
HOH
69
3
HOH
HOH
1070
A
HOH
70
3
HOH
HOH
1071
A
HOH
71
3
HOH
HOH
1072
A
HOH
72
3
HOH
HOH
1073
A
HOH
73
3
HOH
HOH
1074
A
HOH
74
3
HOH
HOH
1075
A
HOH
75
3
HOH
HOH
1076
A
HOH
76
3
HOH
HOH
1077
A
HOH
77
3
HOH
HOH
1078
A
HOH
78
3
HOH
HOH
1079
A
HOH
79
3
HOH
HOH
1080
A
HOH
80
3
HOH
HOH
1081
A
HOH
81
3
HOH
HOH
1082
A
HOH
82
3
HOH
HOH
1083
A
HOH
83
3
HOH
HOH
1084
A
HOH
84
3
HOH
HOH
1085
A
HOH
85
3
HOH
HOH
1086
A
HOH
86
3
HOH
HOH
1087
A
HOH
87
3
HOH
HOH
1088
A
HOH
88
3
HOH
HOH
1089
A
HOH
89
3
HOH
HOH
1090
A
HOH
90
3
HOH
HOH
1091
A
HOH
91
3
HOH
HOH
1092
A
HOH
92
3
HOH
HOH
1093
A
HOH
93
3
HOH
HOH
1094
A
HOH
94
3
HOH
HOH
1095
A
HOH
95
3
HOH
HOH
1096
A
HOH
96
3
HOH
HOH
1097
A
HOH
97
3
HOH
HOH
1098
A
HOH
98
3
HOH
HOH
1099
A
HOH
99
3
HOH
HOH
1100
A
HOH
100
3
HOH
HOH
1101
A
HOH
101
3
HOH
HOH
1102
A
HOH
102
3
HOH
HOH
1103
A
HOH
103
3
HOH
HOH
1104
A
HOH
104
3
HOH
HOH
1105
A
HOH
105
3
HOH
HOH
1106
A
HOH
106
3
HOH
HOH
1107
A
HOH
107
3
HOH
HOH
1108
A
HOH
108
3
HOH
HOH
1109
A
HOH
109
3
HOH
HOH
1110
A
HOH
110
3
HOH
HOH
1111
A
HOH
111
3
HOH
HOH
1112
A
HOH
112
3
HOH
HOH
1113
A
HOH
113
3
HOH
HOH
1114
A
HOH
114
3
HOH
HOH
1115
A
HOH
115
3
HOH
HOH
1116
A
HOH
116
3
HOH
HOH
1117
A
HOH
117
3
HOH
HOH
1118
A
HOH
118
3
HOH
HOH
1119
A
HOH
119
3
HOH
HOH
1120
A
HOH
120
3
HOH
HOH
1121
A
HOH
121
3
HOH
HOH
1122
A
HOH
122
3
HOH
HOH
1123
A
HOH
123
3
HOH
HOH
1124
A
HOH
124
3
HOH
HOH
1125
A
HOH
125
3
HOH
HOH
1126
A
HOH
126
3
HOH
HOH
1127
A
HOH
127
3
HOH
HOH
1128
A
HOH
128
3
HOH
HOH
1129
A
HOH
129
3
HOH
HOH
1130
A
HOH
130
3
HOH
HOH
1131
A
HOH
131
3
HOH
HOH
1132
A
HOH
132
3
HOH
HOH
1133
A
HOH
133
3
HOH
HOH
1134
A
HOH
134
3
HOH
HOH
1135
A
HOH
135
3
HOH
HOH
1136
A
HOH
136
3
HOH
HOH
1137
A
HOH
137
3
HOH
HOH
1138
A
HOH
138
3
HOH
HOH
1139
A
HOH
139
3
HOH
HOH
1140
A
HOH
140
3
HOH
HOH
1141
A
HOH
141
3
HOH
HOH
1142
A
HOH
142
3
HOH
HOH
1143
A
HOH
143
3
HOH
HOH
1144
A
HOH
144
3
HOH
HOH
1145
A
HOH
145
3
HOH
HOH
1146
A
HOH
146
3
HOH
HOH
1147
A
HOH
147
3
HOH
HOH
1148
A
HOH
148
3
HOH
HOH
1149
A
HOH
149
3
HOH
HOH
1150
A
HOH
150
3
HOH
HOH
1151
A
HOH
151
3
HOH
HOH
1152
A
HOH
152
3
HOH
HOH
1153
A
HOH
153
3
HOH
HOH
1154
A
HOH
154
3
HOH
HOH
1155
A
HOH
155
3
HOH
HOH
1156
A
HOH
156
3
HOH
HOH
1157
A
HOH
157
3
HOH
HOH
1158
A
HOH
158
3
HOH
HOH
1159
A
HOH
159
3
HOH
HOH
1160
A
HOH
160
3
HOH
HOH
1161
A
HOH
161
3
HOH
HOH
1162
A
HOH
162
3
HOH
HOH
1163
A
HOH
163
3
HOH
HOH
1164
A
HOH
164
3
HOH
HOH
1165
A
HOH
165
3
HOH
HOH
1166
A
HOH
166
3
HOH
HOH
1167
A
HOH
167
3
HOH
HOH
1168
A
HOH
168
3
HOH
HOH
1169
A
HOH
169
3
HOH
HOH
1170
A
HOH
170
3
HOH
HOH
1171
A
HOH
171
3
HOH
HOH
1172
A
HOH
172
3
HOH
HOH
1173
A
HOH
173
3
HOH
HOH
1174
A
HOH
174
3
HOH
HOH
1175
A
HOH
175
3
HOH
HOH
1176
A
HOH
176
3
HOH
HOH
1177
A
HOH
177
3
HOH
HOH
1178
A
HOH
178
3
HOH
HOH
1179
A
HOH
179
3
HOH
HOH
1180
A
HOH
180
3
HOH
HOH
1181
A
HOH
181
3
HOH
HOH
1182
A
HOH
182
3
HOH
HOH
1183
A
HOH
183
3
HOH
HOH
1184
A
HOH
184
3
HOH
HOH
1185
A
HOH
185
3
HOH
HOH
1186
A
HOH
186
3
HOH
HOH
1187
A
HOH
187
3
HOH
HOH
1188
A
HOH
188
3
HOH
HOH
1189
A
HOH
189
3
HOH
HOH
1190
A
HOH
190
3
HOH
HOH
1191
A
HOH
191
3
HOH
HOH
1192
A
HOH
192
3
HOH
HOH
1193
A
HOH
193
3
HOH
HOH
1194
A
HOH
194
3
HOH
HOH
1195
A
HOH
195
3
HOH
HOH
1196
A
HOH
196
3
HOH
HOH
1197
A
HOH
197
3
HOH
HOH
1198
A
HOH
198
3
HOH
HOH
1199
A
HOH
199
3
HOH
HOH
1200
A
HOH
200
3
HOH
HOH
1201
A
HOH
201
3
HOH
HOH
1202
A
HOH
202
3
HOH
HOH
1203
A
HOH
203
3
HOH
HOH
1204
A
HOH
204
3
HOH
HOH
1205
A
HOH
205
3
HOH
HOH
1206
A
HOH
206
3
HOH
HOH
1207
A
HOH
207
3
HOH
HOH
1208
A
HOH
208
3
HOH
HOH
1209
A
HOH
209
3
HOH
HOH
1210
A
HOH
210
3
HOH
HOH
1211
A
HOH
211
3
HOH
HOH
1212
A
HOH
212
3
HOH
HOH
1213
A
HOH
213
3
HOH
HOH
1214
A
HOH
214
3
HOH
HOH
1215
A
HOH
215
3
HOH
HOH
1216
A
HOH
216
3
HOH
HOH
1217
A
HOH
217
3
HOH
HOH
1218
A
HOH
218
3
HOH
HOH
1219
A
HOH
219
3
HOH
HOH
1220
A
HOH
220
3
HOH
HOH
1221
A
HOH
221
3
HOH
HOH
1222
A
HOH
222
3
HOH
HOH
1223
A
HOH
223
3
HOH
HOH
1224
A
HOH
224
3
HOH
HOH
1225
A
HOH
225
3
HOH
HOH
1226
A
HOH
226
3
HOH
HOH
1227
A
HOH
227
3
HOH
HOH
1228
A
HOH
228
3
HOH
HOH
1229
A
HOH
229
3
HOH
HOH
1230
A
HOH
230
3
HOH
HOH
1231
A
HOH
231
3
HOH
HOH
1232
A
HOH
232
3
HOH
HOH
1233
A
HOH
233
3
HOH
HOH
1234
A
HOH
234
3
HOH
HOH
1235
A
HOH
235
3
HOH
HOH
1236
A
HOH
236
3
HOH
HOH
1237
A
HOH
237
3
HOH
HOH
1238
A
HOH
238
3
HOH
HOH
1239
A
HOH
239
3
HOH
HOH
1240
A
HOH
240
3
HOH
HOH
1241
A
HOH
241
3
HOH
HOH
1242
A
HOH
242
3
HOH
HOH
1243
A
HOH
243
3
HOH
HOH
1244
A
HOH
244
3
HOH
HOH
1245
A
HOH
245
3
HOH
HOH
1246
A
HOH
246
3
HOH
HOH
1247
A
HOH
247
3
HOH
HOH
1248
A
HOH
248
3
HOH
HOH
1249
A
HOH
249
3
HOH
HOH
1250
A
HOH
250
3
HOH
HOH
1251
A
HOH
251
3
HOH
HOH
1252
A
HOH
252
3
HOH
HOH
1253
A
HOH
253
3
HOH
HOH
1254
A
HOH
254
3
HOH
HOH
1255
A
HOH
255
3
HOH
HOH
1256
A
HOH
256
3
HOH
HOH
1257
A
HOH
257
3
HOH
HOH
1258
A
HOH
258
3
HOH
HOH
1259
A
HOH
259
3
HOH
HOH
1260
A
HOH
260
3
HOH
HOH
1261
A
HOH
261
3
HOH
HOH
1262
A
HOH
262
3
HOH
HOH
1263
A
HOH
263
3
HOH
HOH
1264
A
HOH
264
3
HOH
HOH
1265
A
HOH
265
3
HOH
HOH
1266
A
HOH
266
3
HOH
HOH
1267
A
HOH
267
3
HOH
HOH
1268
A
HOH
268
3
HOH
HOH
1269
A
HOH
269
3
HOH
HOH
1270
A
HOH
270
3
HOH
HOH
1271
A
HOH
271
3
HOH
HOH
1272
A
HOH
272
3
HOH
HOH
1273
A
HOH
273
3
HOH
HOH
1274
A
HOH
274
3
HOH
HOH
1275
A
HOH
275
3
HOH
HOH
1276
A
HOH
276
3
HOH
HOH
1277
A
HOH
277
3
HOH
HOH
1278
A
HOH
278
3
HOH
HOH
1279
A
HOH
279
3
HOH
HOH
1280
A
HOH
280
3
HOH
HOH
1281
A
HOH
281
3
HOH
HOH
1282
A
HOH
282
3
HOH
HOH
1283
A
HOH
283
3
HOH
HOH
1284
A
HOH
284
3
HOH
HOH
1285
A
HOH
285
3
HOH
HOH
1286
A
HOH
286
3
HOH
HOH
1287
A
HOH
287
3
HOH
HOH
1288
A
HOH
288
3
HOH
HOH
1289
A
HOH
289
3
HOH
HOH
1290
A
HOH
290
3
HOH
HOH
1291
A
HOH
291
3
HOH
HOH
1292
A
HOH
292
3
HOH
HOH
1293
A
HOH
293
3
HOH
HOH
1294
A
HOH
294
3
HOH
HOH
1295
A
HOH
295
3
HOH
HOH
1296
A
HOH
296
3
HOH
HOH
1297
A
HOH
297
3
HOH
HOH
1298
A
HOH
298
3
HOH
HOH
1299
A
HOH
299
3
HOH
HOH
1300
A
HOH
300
3
HOH
HOH
1301
A
HOH
301
3
HOH
HOH
1302
A
HOH
302
3
HOH
HOH
1303
A
HOH
303
3
HOH
HOH
1304
A
HOH
304
3
HOH
HOH
1305
A
HOH
305
3
HOH
HOH
1306
A
HOH
306
3
HOH
HOH
1307
A
HOH
307
3
HOH
HOH
1308
A
HOH
308
3
HOH
HOH
1309
A
HOH
309
3
HOH
HOH
1310
A
HOH
310
3
HOH
HOH
1311
A
HOH
311
3
HOH
HOH
1312
A
HOH
312
3
HOH
HOH
1313
A
HOH
313
3
HOH
HOH
1314
A
HOH
314
3
HOH
HOH
1315
A
HOH
315
3
HOH
HOH
1316
A
HOH
316
3
HOH
HOH
1317
A
n
1
3
A
n
2
4
A
n
3
5
A
n
4
6
A
ASN
7
n
5
ASN
7
A
HIS
8
n
6
HIS
8
A
LEU
9
n
7
LEU
9
A
SER
10
n
8
SER
10
A
ILE
11
n
9
ILE
11
A
VAL
12
n
10
VAL
12
A
THR
13
n
11
THR
13
A
LEU
14
n
12
LEU
14
A
GLU
15
n
13
GLU
15
A
GLU
16
n
14
GLU
16
A
ALA
17
n
15
ALA
17
A
PRO
18
n
16
PRO
18
A
PHE
19
n
17
PHE
19
A
VAL
20
n
18
VAL
20
A
ILE
21
n
19
ILE
21
A
VAL
22
n
20
VAL
22
A
GLU
23
n
21
GLU
23
A
ASP
24
n
22
ASP
24
A
ILE
25
n
23
ILE
25
A
ASP
26
n
24
ASP
26
A
PRO
27
n
25
PRO
27
A
LEU
28
n
26
LEU
28
A
n
27
29
A
GLU
30
n
28
GLU
30
A
THR
31
n
29
THR
31
A
CYS
32
n
30
CYS
32
A
VAL
33
n
31
VAL
33
A
ARG
34
n
32
ARG
34
A
ASN
35
n
33
ASN
35
A
THR
36
n
34
THR
36
A
VAL
37
n
35
VAL
37
A
PRO
38
n
36
PRO
38
A
CYS
39
n
37
CYS
39
A
ARG
40
n
38
ARG
40
A
LYS
41
n
39
LYS
41
A
PHE
42
n
40
PHE
42
A
VAL
43
n
41
VAL
43
A
LYS
44
n
42
LYS
44
A
ILE
45
n
43
ILE
45
A
ASN
46
n
44
ASN
46
A
ASN
47
n
45
ASN
47
A
SER
48
n
46
SER
48
A
THR
49
n
47
THR
49
A
ASN
50
n
48
ASN
50
A
GLU
51
n
49
GLU
51
A
GLY
52
n
50
GLY
52
A
MET
53
n
51
MET
53
A
ASN
54
n
52
ASN
54
A
VAL
55
n
53
VAL
55
A
LYS
56
n
54
LYS
56
A
LYS
57
n
55
LYS
57
A
CYS
58
n
56
CYS
58
A
CYS
59
n
57
CYS
59
A
LYS
60
n
58
LYS
60
A
GLY
61
n
59
GLY
61
A
PHE
62
n
60
PHE
62
A
CYS
63
n
61
CYS
63
A
ILE
64
n
62
ILE
64
A
ASP
65
n
63
ASP
65
A
ILE
66
n
64
ILE
66
A
LEU
67
n
65
LEU
67
A
LYS
68
n
66
LYS
68
A
LYS
69
n
67
LYS
69
A
LEU
70
n
68
LEU
70
A
SER
71
n
69
SER
71
A
ARG
72
n
70
ARG
72
A
THR
73
n
71
THR
73
A
VAL
74
n
72
VAL
74
A
LYS
75
n
73
LYS
75
A
PHE
76
n
74
PHE
76
A
THR
77
n
75
THR
77
A
TYR
78
n
76
TYR
78
A
ASP
79
n
77
ASP
79
A
LEU
80
n
78
LEU
80
A
TYR
81
n
79
TYR
81
A
LEU
82
n
80
LEU
82
A
VAL
83
n
81
VAL
83
A
THR
84
n
82
THR
84
A
ASN
85
n
83
ASN
85
A
GLY
86
n
84
GLY
86
A
LYS
87
n
85
LYS
87
A
HIS
88
n
86
HIS
88
A
GLY
89
n
87
GLY
89
A
LYS
90
n
88
LYS
90
A
LYS
91
n
89
LYS
91
A
VAL
92
n
90
VAL
92
A
ASN
93
n
91
ASN
93
A
ASN
94
n
92
ASN
94
A
VAL
95
n
93
VAL
95
A
TRP
96
n
94
TRP
96
A
ASN
97
n
95
ASN
97
A
GLY
98
n
96
GLY
98
A
MET
99
n
97
MET
99
A
ILE
100
n
98
ILE
100
A
GLY
101
n
99
GLY
101
A
GLU
102
n
100
GLU
102
A
VAL
103
n
101
VAL
103
A
VAL
104
n
102
VAL
104
A
TYR
105
n
103
TYR
105
A
GLN
106
n
104
GLN
106
A
ARG
107
n
105
ARG
107
A
ALA
108
n
106
ALA
108
A
VAL
109
n
107
VAL
109
A
MET
110
n
108
MET
110
A
ALA
111
n
109
ALA
111
A
VAL
112
n
110
VAL
112
A
GLY
113
n
111
GLY
113
A
SER
114
n
112
SER
114
A
LEU
115
n
113
LEU
115
A
THR
116
n
114
THR
116
A
ILE
117
n
115
ILE
117
A
ASN
118
n
116
ASN
118
A
GLU
119
n
117
GLU
119
A
GLU
120
n
118
GLU
120
A
ARG
121
n
119
ARG
121
A
SER
122
n
120
SER
122
A
GLU
123
n
121
GLU
123
A
VAL
124
n
122
VAL
124
A
VAL
125
n
123
VAL
125
A
ASP
126
n
124
ASP
126
A
PHE
127
n
125
PHE
127
A
SER
128
n
126
SER
128
A
VAL
129
n
127
VAL
129
A
PRO
130
n
128
PRO
130
A
PHE
131
n
129
PHE
131
A
VAL
132
n
130
VAL
132
A
GLU
133
n
131
GLU
133
A
THR
134
n
132
THR
134
A
GLY
135
n
133
GLY
135
A
ILE
136
n
134
ILE
136
A
SER
137
n
135
SER
137
A
VAL
138
n
136
VAL
138
A
MET
139
n
137
MET
139
A
VAL
140
n
138
VAL
140
A
SER
141
n
139
SER
141
A
ARG
142
n
140
ARG
142
A
GLY
143
n
141
GLY
143
A
THR
144
n
142
THR
144
A
GLN
145
n
143
GLN
145
A
VAL
146
n
144
VAL
146
A
THR
147
n
145
THR
147
A
GLY
148
n
146
GLY
148
A
LEU
149
n
147
LEU
149
A
SER
150
n
148
SER
150
A
ASP
151
n
149
ASP
151
A
LYS
152
n
150
LYS
152
A
LYS
153
n
151
LYS
153
A
PHE
154
n
152
PHE
154
A
GLN
155
n
153
GLN
155
A
ARG
156
n
154
ARG
156
A
PRO
157
n
155
PRO
157
A
HIS
158
n
156
HIS
158
A
ASP
159
n
157
ASP
159
A
TYR
160
n
158
TYR
160
A
SER
161
n
159
SER
161
A
PRO
162
n
160
PRO
162
A
PRO
163
n
161
PRO
163
A
PHE
164
n
162
PHE
164
A
ARG
165
n
163
ARG
165
A
PHE
166
n
164
PHE
166
A
GLY
167
n
165
GLY
167
A
THR
168
n
166
THR
168
A
VAL
169
n
167
VAL
169
A
PRO
170
n
168
PRO
170
A
ASN
171
n
169
ASN
171
A
GLY
172
n
170
GLY
172
A
SER
173
n
171
SER
173
A
THR
174
n
172
THR
174
A
GLU
175
n
173
GLU
175
A
ARG
176
n
174
ARG
176
A
ASN
177
n
175
ASN
177
A
ILE
178
n
176
ILE
178
A
ARG
179
n
177
ARG
179
A
ASN
180
n
178
ASN
180
A
ASN
181
n
179
ASN
181
A
TYR
182
n
180
TYR
182
A
PRO
183
n
181
PRO
183
A
TYR
184
n
182
TYR
184
A
MET
185
n
183
MET
185
A
HIS
186
n
184
HIS
186
A
GLN
187
n
185
GLN
187
A
TYR
188
n
186
TYR
188
A
MET
189
n
187
MET
189
A
THR
190
n
188
THR
190
A
ARG
191
n
189
ARG
191
A
PHE
192
n
190
PHE
192
A
ASN
193
n
191
ASN
193
A
GLN
194
n
192
GLN
194
A
ARG
195
n
193
ARG
195
A
GLY
196
n
194
GLY
196
A
VAL
197
n
195
VAL
197
A
GLU
198
n
196
GLU
198
A
ASP
199
n
197
ASP
199
A
ALA
200
n
198
ALA
200
A
LEU
201
n
199
LEU
201
A
VAL
202
n
200
VAL
202
A
SER
203
n
201
SER
203
A
LEU
204
n
202
LEU
204
A
LYS
205
n
203
LYS
205
A
THR
206
n
204
THR
206
A
GLY
207
n
205
GLY
207
A
LYS
208
n
206
LYS
208
A
LEU
209
n
207
LEU
209
A
ASP
210
n
208
ASP
210
A
ALA
211
n
209
ALA
211
A
PHE
212
n
210
PHE
212
A
ILE
213
n
211
ILE
213
A
TYR
214
n
212
TYR
214
A
ASP
215
n
213
ASP
215
A
ALA
216
n
214
ALA
216
A
ALA
217
n
215
ALA
217
A
VAL
218
n
216
VAL
218
A
LEU
219
n
217
LEU
219
A
ASN
220
n
218
ASN
220
A
TYR
221
n
219
TYR
221
A
LYS
222
n
220
LYS
222
A
ALA
223
n
221
ALA
223
A
GLY
224
n
222
GLY
224
A
ARG
225
n
223
ARG
225
A
ASP
226
n
224
ASP
226
A
GLU
227
n
225
GLU
227
A
GLY
228
n
226
GLY
228
A
CYS
229
n
227
CYS
229
A
LYS
230
n
228
LYS
230
A
LEU
231
n
229
LEU
231
A
VAL
232
n
230
VAL
232
A
THR
233
n
231
THR
233
A
ILE
234
n
232
ILE
234
A
GLY
235
n
233
GLY
235
A
SER
236
n
234
SER
236
A
GLY
237
n
235
GLY
237
A
TYR
238
n
236
TYR
238
A
ILE
239
n
237
ILE
239
A
PHE
240
n
238
PHE
240
A
ALA
241
n
239
ALA
241
A
THR
242
n
240
THR
242
A
THR
243
n
241
THR
243
A
GLY
244
n
242
GLY
244
A
TYR
245
n
243
TYR
245
A
GLY
246
n
244
GLY
246
A
ILE
247
n
245
ILE
247
A
ALA
248
n
246
ALA
248
A
LEU
249
n
247
LEU
249
A
GLN
250
n
248
GLN
250
A
LYS
251
n
249
LYS
251
A
GLY
252
n
250
GLY
252
A
SER
253
n
251
SER
253
A
PRO
254
n
252
PRO
254
A
TRP
255
n
253
TRP
255
A
LYS
256
n
254
LYS
256
A
ARG
257
n
255
ARG
257
A
GLN
258
n
256
GLN
258
A
ILE
259
n
257
ILE
259
A
ASP
260
n
258
ASP
260
A
LEU
261
n
259
LEU
261
A
ALA
262
n
260
ALA
262
A
LEU
263
n
261
LEU
263
A
LEU
264
n
262
LEU
264
A
GLN
265
n
263
GLN
265
A
PHE
266
n
264
PHE
266
A
VAL
267
n
265
VAL
267
A
GLY
268
n
266
GLY
268
A
ASP
269
n
267
ASP
269
A
GLY
270
n
268
GLY
270
A
GLU
271
n
269
GLU
271
A
MET
272
n
270
MET
272
A
GLU
273
n
271
GLU
273
A
GLU
274
n
272
GLU
274
A
LEU
275
n
273
LEU
275
A
GLU
276
n
274
GLU
276
A
THR
277
n
275
THR
277
A
LEU
278
n
276
LEU
278
A
TRP
279
n
277
TRP
279
A
LEU
280
n
278
LEU
280
A
THR
281
n
279
THR
281
A
GLY
282
n
280
GLY
282
A
ILE
283
n
281
ILE
283
A
CYS
284
n
282
CYS
284
A
HIS
285
n
283
HIS
285
A
n
284
286
A
author_and_software_defined_assembly
PISA
1
monomeric
software_defined_assembly
PISA
2
dimeric
2790
-11
25990
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_665
-y+1,-x+1,-z+1/2
crystal symmetry operation
52.1060000000
52.1060000000
99.3375000000
A
O
ASP
79
A
O
ASP
77
A
N
LEU
9
A
N
LEU
7
A
N
VAL
12
A
N
VAL
10
A
O
MET
110
A
O
MET
108
A
N
ALA
111
A
N
ALA
109
A
O
ALA
248
A
O
ALA
246
A
O
LEU
249
A
O
LEU
247
A
N
ASP
126
A
N
ASP
124
A
N
ILE
21
A
N
ILE
19
A
O
LYS
60
A
O
LYS
58
A
O
VAL
55
A
O
VAL
53
A
N
LYS
41
A
N
LYS
39
A
N
VAL
92
A
N
VAL
90
A
O
VAL
95
A
O
VAL
93
A
N
VAL
132
A
N
VAL
130
A
O
TYR
245
A
O
TYR
243
A
N
GLY
167
A
N
GLY
165
A
O
ILE
213
A
O
ILE
211
A
O
PHE
212
A
O
PHE
210
A
N
MET
139
A
N
MET
137
A
N
VAL
138
A
N
VAL
136
A
O
ILE
234
A
O
ILE
232
1
A
CG
LEU
28
A
CG
LEU
26
1
Y
1
A
CD1
LEU
28
A
CD1
LEU
26
1
Y
1
A
CD2
LEU
28
A
CD2
LEU
26
1
Y
1
A
CG
GLU
30
A
CG
GLU
28
1
Y
1
A
CD
GLU
30
A
CD
GLU
28
1
Y
1
A
OE1
GLU
30
A
OE1
GLU
28
1
Y
1
A
OE2
GLU
30
A
OE2
GLU
28
1
Y
1
A
CG
ARG
195
A
CG
ARG
193
1
Y
1
A
CD
ARG
195
A
CD
ARG
193
1
Y
1
A
NE
ARG
195
A
NE
ARG
193
1
Y
1
A
CZ
ARG
195
A
CZ
ARG
193
1
Y
1
A
NH1
ARG
195
A
NH1
ARG
193
1
Y
1
A
NH2
ARG
195
A
NH2
ARG
193
1
Y
1
A
CG
LYS
230
A
CG
LYS
228
1
Y
1
A
CD
LYS
230
A
CD
LYS
228
1
Y
1
A
CE
LYS
230
A
CE
LYS
228
1
Y
1
A
NZ
LYS
230
A
NZ
LYS
228
1
Y
1
A
GLY
3
A
GLY
1
1
Y
1
A
PRO
4
A
PRO
2
1
Y
1
A
ASP
5
A
ASP
3
1
Y
1
A
ASP
6
A
ASP
4
1
Y
1
A
THR
29
A
THR
27
1
Y
1
A
ASN
286
A
ASN
284
1
Y
1
A
GLU
16
-169.00
97.39
1
A
VAL
33
-123.79
-164.80
1
A
ARG
34
54.07
-127.73
1
A
LYS
87
-122.37
-109.85
1
A
THR
243
-160.38
-145.27
protein_rep.param
protein.top
glut.param
glut.top
water_rep.param
water.top
19.1
0.90
0.00
0.00
0.90
0.00
-1.80
0.223
0.004
0.196
0.1961
1.70
19.19
3074
30942
30942
10.0
98.4
RANDOM
1859072.89
0.000000
1
RESTRAINED
THROUGHOUT
0.0
Combination of MR and SAD
FLAT MODEL
52.0422
0.409777
0.21
0.19
5.00
0.11
0.08
1.70
19.19
316
2501
10
0
2175
0.005
1.2
23.0
0.74
1.22
1.50
1.84
2.00
2.19
2.00
3.27
2.50
0.244
0.011
0.215
1.81
458
4249
6
9.7
92.3
17.5
1.70
20.
2A5S
30942
30725
1
99.3
data collection
HKL-2000
data scaling
SCALEPACK
phasing
SOLVE
refinement
CNS
1.1
data reduction
HKL-2000
N-methyl-D-aspartate receptor NMDAR2A subunit
Crystal Structure Of The NR2A Ligand Binding Core In Complex With Glutamate
1
N
N
2
N
N
3
N
N
A
GLY
61
A
GLY
59
HELX_P
A
LYS
75
A
LYS
73
1
1
15
A
ASN
97
A
ASN
95
HELX_P
A
TYR
105
A
TYR
103
1
2
9
A
ASN
118
A
ASN
116
HELX_P
A
GLU
123
A
GLU
121
1
3
6
A
ASP
151
A
ASP
149
HELX_P
A
ARG
156
A
ARG
154
1
4
6
A
PRO
157
A
PRO
155
HELX_P
A
TYR
160
A
TYR
158
5
5
4
A
GLY
172
A
GLY
170
HELX_P
A
ASN
180
A
ASN
178
1
6
9
A
TYR
182
A
TYR
180
HELX_P
A
THR
190
A
THR
188
1
7
9
A
ARG
191
A
ARG
189
HELX_P
A
ASN
193
A
ASN
191
5
8
3
A
GLY
196
A
GLY
194
HELX_P
A
THR
206
A
THR
204
1
9
11
A
ALA
216
A
ALA
214
HELX_P
A
ARG
225
A
ARG
223
1
10
10
A
TYR
238
A
TYR
236
HELX_P
A
THR
242
A
THR
240
5
11
5
A
TRP
255
A
TRP
253
HELX_P
A
ASP
269
A
ASP
267
1
12
15
A
GLY
270
A
GLY
268
HELX_P
A
LEU
280
A
LEU
278
1
13
11
disulf
2.035
A
CYS
32
A
SG
CYS
30
1_555
A
CYS
58
A
SG
CYS
56
1_555
disulf
2.040
A
CYS
39
A
SG
CYS
37
1_555
A
CYS
59
A
SG
CYS
57
1_555
disulf
2.033
A
CYS
229
A
SG
CYS
227
1_555
A
CYS
284
A
SG
CYS
282
1_555
METAL TRANSPORT,MEMBRANE PROTEIN
Protein-ligand complex, METAL TRANSPORT, MEMBRANE PROTEIN
A
ALA
17
A
ALA
15
1
A
PRO
18
A
PRO
16
0.22
A
SER
161
A
SER
159
1
A
PRO
162
A
PRO
160
0.03
NMDE1_RAT
UNP
1
401
Q00959
PDDNHLSIVTLEEAPFVIVEDIDPLTETCVRNTVPCRKFVKINNSTNEGMNVKKCCKGFCIDILKKLSRTVKFTYDLYLV
TNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETGISVMVSR
AAB58801
GB
1
661
2155310
QVTGLSDKKFQRPHDYSPPFRFGTVPNGSTERNIRNNYPYMHQYMTRFNQRGVEDALVSLKTGKLDAFIYDAAVLNYKAG
RDEGCKLVTIGSGYIFATTGYGIALQKGSPWKRQIDLALLQFVGDGEMEELETLWLTGICHN
401
539
2A5S
4
142
Q00959
A
1
2
140
661
802
2A5S
145
286
2155310
A
2
143
284
1
SEE REMARK 999
GLY
3
2A5S
A
Q00959
UNP
1
1
SEE REMARK 999
GLY
143
2A5S
A
Q00959
UNP
141
1
SEE REMARK 999
THR
144
2A5S
A
Q00959
UNP
142
5
3
2
2
4
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
TYR
78
A
TYR
76
A
LEU
82
A
LEU
80
A
LEU
9
A
LEU
7
A
THR
13
A
THR
11
A
MET
110
A
MET
108
A
ALA
111
A
ALA
109
A
ALA
248
A
ALA
246
A
GLN
250
A
GLN
248
A
VAL
125
A
VAL
123
A
PHE
127
A
PHE
125
A
ILE
21
A
ILE
19
A
ASP
24
A
ASP
22
A
GLY
52
A
GLY
50
A
LYS
60
A
LYS
58
A
VAL
37
A
VAL
35
A
LYS
44
A
LYS
42
A
LYS
91
A
LYS
89
A
VAL
92
A
VAL
90
A
VAL
95
A
VAL
93
A
TRP
96
A
TRP
94
A
VAL
132
A
VAL
130
A
THR
134
A
THR
132
A
THR
243
A
THR
241
A
TYR
245
A
TYR
243
A
PHE
166
A
PHE
164
A
GLY
167
A
GLY
165
A
ALA
211
A
ALA
209
A
ASP
215
A
ASP
213
A
ILE
136
A
ILE
134
A
SER
141
A
SER
139
A
LEU
231
A
LEU
229
A
GLY
235
A
GLY
233
BINDING SITE FOR RESIDUE GLU A 1001
Software
11
A
HIS
88
A
HIS
86
11
1_555
A
SER
114
A
SER
112
11
1_555
A
THR
116
A
THR
114
11
1_555
A
ARG
121
A
ARG
119
11
1_555
A
GLY
172
A
GLY
170
11
1_555
A
SER
173
A
SER
171
11
1_555
A
THR
174
A
THR
172
11
1_555
A
TYR
214
A
TYR
212
11
1_555
A
ASP
215
A
ASP
213
11
1_555
A
HOH
1004
C
HOH
11
1_555
A
HOH
1007
C
HOH
11
1_555
92
tetragonal
P 41 21 2