data_2AF1 # _entry.id 2AF1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.376 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2AF1 pdb_00002af1 10.2210/pdb2af1/pdb NDB BD0089 ? ? RCSB RCSB033816 ? ? WWPDB D_1000033816 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2AF1 _pdbx_database_status.recvd_initial_deposition_date 2005-07-25 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'De Luchi, D.' 1 'Tereshko, V.' 2 'Gouyette, C.' 3 'Subirana, J.A.' 4 # _citation.id primary _citation.title 'Structure of the DNA Coiled Coil Formed by d(CGATATATATAT)' _citation.journal_abbrev Chembiochem _citation.journal_volume 7 _citation.page_first 585 _citation.page_last 587 _citation.year 2006 _citation.journal_id_ASTM ? _citation.country GE _citation.journal_id_ISSN 1439-4227 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16485316 _citation.pdbx_database_id_DOI 10.1002/cbic.200500449 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'De Luchi, D.' 1 ? primary 'Tereshko, V.' 2 ? primary 'Gouyette, C.' 3 ? primary 'Subirana, J.A.' 4 ? # _cell.entry_id 2AF1 _cell.length_a 26.541 _cell.length_b 26.541 _cell.length_c 220.527 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2AF1 _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description "5'-D(*CP*GP*AP*TP*AP*TP*AP*TP*AP*TP*AP*T)-3'" _entity.formula_weight 3660.428 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DA)(DT)(DA)(DT)(DA)(DT)(DA)(DT)(DA)(DT)' _entity_poly.pdbx_seq_one_letter_code_can CGATATATATAT _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DA n 1 4 DT n 1 5 DA n 1 6 DT n 1 7 DA n 1 8 DT n 1 9 DA n 1 10 DT n 1 11 DA n 1 12 DT n # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2AF1 _struct_ref.pdbx_db_accession 2AF1 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2AF1 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 12 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2AF1 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 12 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # _exptl.entry_id 2AF1 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.30 _exptl_crystal.density_percent_sol 75 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details ;cacodylate,MPD, sodium phosphate, potassium chloride, Trimethylamine-N-oxide, spermine , pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 cacodylate ? ? ? 1 2 1 MPD ? ? ? 1 3 1 'sodium phosphate' ? ? ? 1 4 1 'potassium chloride' ? ? ? 1 5 1 Trimethylamine-N-oxide ? ? ? 1 6 1 spermine ? ? ? 1 7 1 H2O ? ? ? 1 8 2 cacodylate ? ? ? 1 9 2 MPD ? ? ? 1 10 2 'sodium phosphate' ? ? ? 1 11 2 'potassium chloride' ? ? ? 1 12 2 H2O ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 110 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2004-11-24 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.972 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM16' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM16 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.972 # _reflns.entry_id 2AF1 _reflns.observed_criterion_sigma_F 1 _reflns.observed_criterion_sigma_I 1 _reflns.d_resolution_high 3.10 _reflns.d_resolution_low 23.0 _reflns.number_all 1101 _reflns.number_obs 1099 _reflns.percent_possible_obs 99.2 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 3.10 _reflns_shell.d_res_low ? _reflns_shell.percent_possible_all 93 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2AF1 _refine.ls_number_reflns_obs 983 _refine.ls_number_reflns_all 985 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 23.00 _refine.ls_d_res_high 3.10 _refine.ls_percent_reflns_obs 99.82 _refine.ls_R_factor_obs 0.33318 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.3316 _refine.ls_R_factor_R_free 0.34585 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.5 _refine.ls_number_reflns_R_free 115 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.935 _refine.correlation_coeff_Fo_to_Fc_free 0.946 _refine.B_iso_mean 50.000 _refine.aniso_B[1][1] -0.32 _refine.aniso_B[2][2] -0.32 _refine.aniso_B[3][3] 0.48 _refine.aniso_B[1][2] -0.16 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'pdb entry 1GQU' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 5.020 _refine.pdbx_overall_ESU_R_Free 0.554 _refine.overall_SU_ML 0.750 _refine.overall_SU_B 45.734 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag UNVERIFIED _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 243 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 243 _refine_hist.d_res_high 3.10 _refine_hist.d_res_low 23.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.008 0.021 ? 272 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.980 3.000 ? 418 'X-RAY DIFFRACTION' ? r_chiral_restr 0.087 0.200 ? 47 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 126 'X-RAY DIFFRACTION' ? r_nbd_refined 0.248 0.200 ? 119 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.314 0.200 ? 152 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.298 0.200 ? 1 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.236 0.200 ? 27 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.137 0.200 ? 9 'X-RAY DIFFRACTION' ? r_scbond_it 0.000 3.000 ? 389 'X-RAY DIFFRACTION' ? r_scangle_it 0.000 4.500 ? 418 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 3.10 _refine_ls_shell.d_res_low 3.181 _refine_ls_shell.number_reflns_R_work 62 _refine_ls_shell.R_factor_R_work 0.541 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.612 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 9 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2AF1 _struct.title 'Structure of the DNA coiled-coil formed by d(CGATATATATAT)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2AF1 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'HOOGSTEEN H-BONDS, COILED-COIL, DNA' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DA 3 N6 ? ? ? 1_555 A DT 12 O4 ? ? A DA 3 A DT 12 12_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog2 hydrog ? ? A DA 3 N7 ? ? ? 1_555 A DT 12 N3 ? ? A DA 3 A DT 12 12_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog3 hydrog ? ? A DT 4 N3 ? ? ? 1_555 A DA 11 N7 ? ? A DT 4 A DA 11 12_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog4 hydrog ? ? A DT 4 O4 ? ? ? 1_555 A DA 11 N6 ? ? A DT 4 A DA 11 12_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog5 hydrog ? ? A DA 5 N6 ? ? ? 1_555 A DT 10 O4 ? ? A DA 5 A DT 10 12_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog6 hydrog ? ? A DA 5 N7 ? ? ? 1_555 A DT 10 N3 ? ? A DA 5 A DT 10 12_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog7 hydrog ? ? A DT 6 N3 ? ? ? 1_555 A DA 9 N7 ? ? A DT 6 A DA 9 12_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog8 hydrog ? ? A DT 6 O4 ? ? ? 1_555 A DA 9 N6 ? ? A DT 6 A DA 9 12_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog9 hydrog ? ? A DA 7 N6 ? ? ? 1_555 A DT 8 O4 ? ? A DA 7 A DT 8 12_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog10 hydrog ? ? A DA 7 N7 ? ? ? 1_555 A DT 8 N3 ? ? A DA 7 A DT 8 12_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog11 hydrog ? ? A DT 8 N3 ? ? ? 1_555 A DA 7 N7 ? ? A DT 8 A DA 7 12_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog12 hydrog ? ? A DT 8 O4 ? ? ? 1_555 A DA 7 N6 ? ? A DT 8 A DA 7 12_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog13 hydrog ? ? A DA 9 N6 ? ? ? 1_555 A DT 6 O4 ? ? A DA 9 A DT 6 12_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog14 hydrog ? ? A DA 9 N7 ? ? ? 1_555 A DT 6 N3 ? ? A DA 9 A DT 6 12_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog15 hydrog ? ? A DT 10 N3 ? ? ? 1_555 A DA 5 N7 ? ? A DT 10 A DA 5 12_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog16 hydrog ? ? A DT 10 O4 ? ? ? 1_555 A DA 5 N6 ? ? A DT 10 A DA 5 12_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog17 hydrog ? ? A DA 11 N6 ? ? ? 1_555 A DT 4 O4 ? ? A DA 11 A DT 4 12_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog18 hydrog ? ? A DA 11 N7 ? ? ? 1_555 A DT 4 N3 ? ? A DA 11 A DT 4 12_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog19 hydrog ? ? A DT 12 N3 ? ? ? 1_555 A DA 3 N7 ? ? A DT 12 A DA 3 12_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog20 hydrog ? ? A DT 12 O4 ? ? ? 1_555 A DA 3 N6 ? ? A DT 12 A DA 3 12_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 2AF1 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2AF1 _atom_sites.fract_transf_matrix[1][1] 0.037678 _atom_sites.fract_transf_matrix[1][2] 0.021753 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.043506 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004535 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DC A 1 1 ? 1.504 -15.378 33.631 1.00 50.00 ? 1 DC A "O5'" 1 ATOM 2 C "C5'" . DC A 1 1 ? 1.011 -16.705 33.450 1.00 50.00 ? 1 DC A "C5'" 1 ATOM 3 C "C4'" . DC A 1 1 ? -0.441 -16.857 33.903 1.00 50.00 ? 1 DC A "C4'" 1 ATOM 4 O "O4'" . DC A 1 1 ? -0.827 -15.805 34.837 1.00 50.00 ? 1 DC A "O4'" 1 ATOM 5 C "C3'" . DC A 1 1 ? -1.493 -16.833 32.777 1.00 50.00 ? 1 DC A "C3'" 1 ATOM 6 O "O3'" . DC A 1 1 ? -2.501 -17.860 32.966 1.00 50.00 ? 1 DC A "O3'" 1 ATOM 7 C "C2'" . DC A 1 1 ? -2.089 -15.445 32.954 1.00 50.00 ? 1 DC A "C2'" 1 ATOM 8 C "C1'" . DC A 1 1 ? -2.156 -15.495 34.472 1.00 50.00 ? 1 DC A "C1'" 1 ATOM 9 N N1 . DC A 1 1 ? -2.704 -14.296 35.178 1.00 50.00 ? 1 DC A N1 1 ATOM 10 C C2 . DC A 1 1 ? -3.734 -14.507 36.101 1.00 50.00 ? 1 DC A C2 1 ATOM 11 O O2 . DC A 1 1 ? -4.143 -15.660 36.276 1.00 50.00 ? 1 DC A O2 1 ATOM 12 N N3 . DC A 1 1 ? -4.265 -13.450 36.762 1.00 50.00 ? 1 DC A N3 1 ATOM 13 C C4 . DC A 1 1 ? -3.791 -12.229 36.530 1.00 50.00 ? 1 DC A C4 1 ATOM 14 N N4 . DC A 1 1 ? -4.345 -11.215 37.200 1.00 50.00 ? 1 DC A N4 1 ATOM 15 C C5 . DC A 1 1 ? -2.748 -11.986 35.586 1.00 50.00 ? 1 DC A C5 1 ATOM 16 C C6 . DC A 1 1 ? -2.233 -13.037 34.939 1.00 50.00 ? 1 DC A C6 1 ATOM 17 P P . DG A 1 2 ? -3.479 -18.392 31.789 1.00 50.00 ? 2 DG A P 1 ATOM 18 O OP1 . DG A 1 2 ? -2.672 -19.156 30.801 1.00 50.00 ? 2 DG A OP1 1 ATOM 19 O OP2 . DG A 1 2 ? -4.322 -17.271 31.304 1.00 50.00 ? 2 DG A OP2 1 ATOM 20 O "O5'" . DG A 1 2 ? -4.390 -19.411 32.640 1.00 50.00 ? 2 DG A "O5'" 1 ATOM 21 C "C5'" . DG A 1 2 ? -5.658 -19.862 32.177 1.00 50.00 ? 2 DG A "C5'" 1 ATOM 22 C "C4'" . DG A 1 2 ? -6.813 -18.980 32.632 1.00 50.00 ? 2 DG A "C4'" 1 ATOM 23 O "O4'" . DG A 1 2 ? -6.355 -17.811 33.360 1.00 50.00 ? 2 DG A "O4'" 1 ATOM 24 C "C3'" . DG A 1 2 ? -7.631 -18.425 31.478 1.00 50.00 ? 2 DG A "C3'" 1 ATOM 25 O "O3'" . DG A 1 2 ? -9.018 -18.676 31.680 1.00 50.00 ? 2 DG A "O3'" 1 ATOM 26 C "C2'" . DG A 1 2 ? -7.328 -16.932 31.503 1.00 50.00 ? 2 DG A "C2'" 1 ATOM 27 C "C1'" . DG A 1 2 ? -7.178 -16.722 33.000 1.00 50.00 ? 2 DG A "C1'" 1 ATOM 28 N N9 . DG A 1 2 ? -6.579 -15.444 33.417 1.00 50.00 ? 2 DG A N9 1 ATOM 29 C C8 . DG A 1 2 ? -5.279 -15.038 33.230 1.00 50.00 ? 2 DG A C8 1 ATOM 30 N N7 . DG A 1 2 ? -5.019 -13.846 33.704 1.00 50.00 ? 2 DG A N7 1 ATOM 31 C C5 . DG A 1 2 ? -6.216 -13.425 34.261 1.00 50.00 ? 2 DG A C5 1 ATOM 32 C C6 . DG A 1 2 ? -6.541 -12.210 34.917 1.00 50.00 ? 2 DG A C6 1 ATOM 33 O O6 . DG A 1 2 ? -5.806 -11.246 35.145 1.00 50.00 ? 2 DG A O6 1 ATOM 34 N N1 . DG A 1 2 ? -7.870 -12.163 35.326 1.00 50.00 ? 2 DG A N1 1 ATOM 35 C C2 . DG A 1 2 ? -8.771 -13.176 35.116 1.00 50.00 ? 2 DG A C2 1 ATOM 36 N N2 . DG A 1 2 ? -10.005 -12.959 35.579 1.00 50.00 ? 2 DG A N2 1 ATOM 37 N N3 . DG A 1 2 ? -8.489 -14.321 34.497 1.00 50.00 ? 2 DG A N3 1 ATOM 38 C C4 . DG A 1 2 ? -7.191 -14.391 34.090 1.00 50.00 ? 2 DG A C4 1 ATOM 39 P P . DA A 1 3 ? -9.929 -18.903 30.380 1.00 50.00 ? 3 DA A P 1 ATOM 40 O OP1 . DA A 1 3 ? -10.504 -20.260 30.531 1.00 50.00 ? 3 DA A OP1 1 ATOM 41 O OP2 . DA A 1 3 ? -9.113 -18.565 29.182 1.00 50.00 ? 3 DA A OP2 1 ATOM 42 O "O5'" . DA A 1 3 ? -11.118 -17.828 30.493 1.00 50.00 ? 3 DA A "O5'" 1 ATOM 43 C "C5'" . DA A 1 3 ? -11.652 -17.386 31.756 1.00 50.00 ? 3 DA A "C5'" 1 ATOM 44 C "C4'" . DA A 1 3 ? -12.345 -16.023 31.650 1.00 50.00 ? 3 DA A "C4'" 1 ATOM 45 O "O4'" . DA A 1 3 ? -11.492 -14.947 32.150 1.00 50.00 ? 3 DA A "O4'" 1 ATOM 46 C "C3'" . DA A 1 3 ? -12.769 -15.573 30.250 1.00 50.00 ? 3 DA A "C3'" 1 ATOM 47 O "O3'" . DA A 1 3 ? -14.084 -15.023 30.319 1.00 50.00 ? 3 DA A "O3'" 1 ATOM 48 C "C2'" . DA A 1 3 ? -11.718 -14.520 29.892 1.00 50.00 ? 3 DA A "C2'" 1 ATOM 49 C "C1'" . DA A 1 3 ? -11.586 -13.852 31.255 1.00 50.00 ? 3 DA A "C1'" 1 ATOM 50 N N9 . DA A 1 3 ? -10.501 -12.885 31.497 1.00 50.00 ? 3 DA A N9 1 ATOM 51 C C8 . DA A 1 3 ? -10.720 -11.615 31.956 1.00 50.00 ? 3 DA A C8 1 ATOM 52 N N7 . DA A 1 3 ? -9.635 -10.893 32.131 1.00 50.00 ? 3 DA A N7 1 ATOM 53 C C5 . DA A 1 3 ? -8.608 -11.744 31.776 1.00 50.00 ? 3 DA A C5 1 ATOM 54 C C6 . DA A 1 3 ? -7.206 -11.554 31.749 1.00 50.00 ? 3 DA A C6 1 ATOM 55 N N6 . DA A 1 3 ? -6.602 -10.417 32.104 1.00 50.00 ? 3 DA A N6 1 ATOM 56 N N1 . DA A 1 3 ? -6.447 -12.590 31.347 1.00 50.00 ? 3 DA A N1 1 ATOM 57 C C2 . DA A 1 3 ? -7.074 -13.720 30.988 1.00 50.00 ? 3 DA A C2 1 ATOM 58 N N3 . DA A 1 3 ? -8.381 -14.024 30.982 1.00 50.00 ? 3 DA A N3 1 ATOM 59 C C4 . DA A 1 3 ? -9.120 -12.982 31.387 1.00 50.00 ? 3 DA A C4 1 ATOM 60 P P . DT A 1 4 ? -15.086 -15.147 29.076 1.00 50.00 ? 4 DT A P 1 ATOM 61 O OP1 . DT A 1 4 ? -16.356 -15.752 29.549 1.00 50.00 ? 4 DT A OP1 1 ATOM 62 O OP2 . DT A 1 4 ? -14.350 -15.770 27.951 1.00 50.00 ? 4 DT A OP2 1 ATOM 63 O "O5'" . DT A 1 4 ? -15.341 -13.616 28.709 1.00 50.00 ? 4 DT A "O5'" 1 ATOM 64 C "C5'" . DT A 1 4 ? -16.210 -12.868 29.542 1.00 50.00 ? 4 DT A "C5'" 1 ATOM 65 C "C4'" . DT A 1 4 ? -15.730 -11.440 29.664 1.00 50.00 ? 4 DT A "C4'" 1 ATOM 66 O "O4'" . DT A 1 4 ? -14.293 -11.447 29.858 1.00 50.00 ? 4 DT A "O4'" 1 ATOM 67 C "C3'" . DT A 1 4 ? -16.015 -10.588 28.426 1.00 50.00 ? 4 DT A "C3'" 1 ATOM 68 O "O3'" . DT A 1 4 ? -17.038 -9.592 28.690 1.00 50.00 ? 4 DT A "O3'" 1 ATOM 69 C "C2'" . DT A 1 4 ? -14.648 -9.991 28.086 1.00 50.00 ? 4 DT A "C2'" 1 ATOM 70 C "C1'" . DT A 1 4 ? -13.836 -10.208 29.364 1.00 50.00 ? 4 DT A "C1'" 1 ATOM 71 N N1 . DT A 1 4 ? -12.313 -10.178 29.234 1.00 50.00 ? 4 DT A N1 1 ATOM 72 C C2 . DT A 1 4 ? -11.635 -9.010 29.572 1.00 50.00 ? 4 DT A C2 1 ATOM 73 O O2 . DT A 1 4 ? -12.185 -7.991 29.961 1.00 50.00 ? 4 DT A O2 1 ATOM 74 N N3 . DT A 1 4 ? -10.265 -9.063 29.437 1.00 50.00 ? 4 DT A N3 1 ATOM 75 C C4 . DT A 1 4 ? -9.516 -10.141 29.009 1.00 50.00 ? 4 DT A C4 1 ATOM 76 O O4 . DT A 1 4 ? -8.297 -10.084 28.922 1.00 50.00 ? 4 DT A O4 1 ATOM 77 C C5 . DT A 1 4 ? -10.268 -11.326 28.674 1.00 50.00 ? 4 DT A C5 1 ATOM 78 C C7 . DT A 1 4 ? -9.540 -12.546 28.196 1.00 50.00 ? 4 DT A C7 1 ATOM 79 C C6 . DT A 1 4 ? -11.609 -11.291 28.795 1.00 50.00 ? 4 DT A C6 1 ATOM 80 P P . DA A 1 5 ? -17.780 -8.753 27.518 1.00 50.00 ? 5 DA A P 1 ATOM 81 O OP1 . DA A 1 5 ? -19.122 -8.349 28.004 1.00 50.00 ? 5 DA A OP1 1 ATOM 82 O OP2 . DA A 1 5 ? -17.677 -9.513 26.241 1.00 50.00 ? 5 DA A OP2 1 ATOM 83 O "O5'" . DA A 1 5 ? -16.879 -7.422 27.435 1.00 50.00 ? 5 DA A "O5'" 1 ATOM 84 C "C5'" . DA A 1 5 ? -16.630 -6.651 28.618 1.00 50.00 ? 5 DA A "C5'" 1 ATOM 85 C "C4'" . DA A 1 5 ? -15.690 -5.486 28.359 1.00 50.00 ? 5 DA A "C4'" 1 ATOM 86 O "O4'" . DA A 1 5 ? -14.302 -5.916 28.389 1.00 50.00 ? 5 DA A "O4'" 1 ATOM 87 C "C3'" . DA A 1 5 ? -15.881 -4.780 27.021 1.00 50.00 ? 5 DA A "C3'" 1 ATOM 88 O "O3'" . DA A 1 5 ? -16.047 -3.388 27.260 1.00 50.00 ? 5 DA A "O3'" 1 ATOM 89 C "C2'" . DA A 1 5 ? -14.594 -5.095 26.262 1.00 50.00 ? 5 DA A "C2'" 1 ATOM 90 C "C1'" . DA A 1 5 ? -13.599 -5.172 27.412 1.00 50.00 ? 5 DA A "C1'" 1 ATOM 91 N N9 . DA A 1 5 ? -12.270 -5.766 27.156 1.00 50.00 ? 5 DA A N9 1 ATOM 92 C C8 . DA A 1 5 ? -11.078 -5.105 27.294 1.00 50.00 ? 5 DA A C8 1 ATOM 93 N N7 . DA A 1 5 ? -10.009 -5.819 27.035 1.00 50.00 ? 5 DA A N7 1 ATOM 94 C C5 . DA A 1 5 ? -10.524 -7.052 26.703 1.00 50.00 ? 5 DA A C5 1 ATOM 95 C C6 . DA A 1 5 ? -9.890 -8.255 26.322 1.00 50.00 ? 5 DA A C6 1 ATOM 96 N N6 . DA A 1 5 ? -8.563 -8.385 26.222 1.00 50.00 ? 5 DA A N6 1 ATOM 97 N N1 . DA A 1 5 ? -10.680 -9.320 26.055 1.00 50.00 ? 5 DA A N1 1 ATOM 98 C C2 . DA A 1 5 ? -12.010 -9.169 26.159 1.00 50.00 ? 5 DA A C2 1 ATOM 99 N N3 . DA A 1 5 ? -12.717 -8.087 26.508 1.00 50.00 ? 5 DA A N3 1 ATOM 100 C C4 . DA A 1 5 ? -11.913 -7.045 26.772 1.00 50.00 ? 5 DA A C4 1 ATOM 101 P P . DT A 1 6 ? -16.716 -2.431 26.155 1.00 50.00 ? 6 DT A P 1 ATOM 102 O OP1 . DT A 1 6 ? -17.819 -1.651 26.762 1.00 50.00 ? 6 DT A OP1 1 ATOM 103 O OP2 . DT A 1 6 ? -16.991 -3.230 24.939 1.00 50.00 ? 6 DT A OP2 1 ATOM 104 O "O5'" . DT A 1 6 ? -15.518 -1.426 25.873 1.00 50.00 ? 6 DT A "O5'" 1 ATOM 105 C "C5'" . DT A 1 6 ? -14.530 -1.232 26.871 1.00 50.00 ? 6 DT A "C5'" 1 ATOM 106 C "C4'" . DT A 1 6 ? -13.252 -0.810 26.187 1.00 50.00 ? 6 DT A "C4'" 1 ATOM 107 O "O4'" . DT A 1 6 ? -12.434 -1.984 25.967 1.00 50.00 ? 6 DT A "O4'" 1 ATOM 108 C "C3'" . DT A 1 6 ? -13.463 -0.181 24.813 1.00 50.00 ? 6 DT A "C3'" 1 ATOM 109 O "O3'" . DT A 1 6 ? -12.755 1.053 24.751 1.00 50.00 ? 6 DT A "O3'" 1 ATOM 110 C "C2'" . DT A 1 6 ? -12.948 -1.235 23.825 1.00 50.00 ? 6 DT A "C2'" 1 ATOM 111 C "C1'" . DT A 1 6 ? -11.877 -1.916 24.668 1.00 50.00 ? 6 DT A "C1'" 1 ATOM 112 N N1 . DT A 1 6 ? -11.429 -3.299 24.247 1.00 50.00 ? 6 DT A N1 1 ATOM 113 C C2 . DT A 1 6 ? -10.073 -3.528 24.132 1.00 50.00 ? 6 DT A C2 1 ATOM 114 O O2 . DT A 1 6 ? -9.235 -2.670 24.343 1.00 50.00 ? 6 DT A O2 1 ATOM 115 N N3 . DT A 1 6 ? -9.725 -4.803 23.753 1.00 50.00 ? 6 DT A N3 1 ATOM 116 C C4 . DT A 1 6 ? -10.582 -5.855 23.489 1.00 50.00 ? 6 DT A C4 1 ATOM 117 O O4 . DT A 1 6 ? -10.168 -6.961 23.161 1.00 50.00 ? 6 DT A O4 1 ATOM 118 C C5 . DT A 1 6 ? -11.987 -5.556 23.629 1.00 50.00 ? 6 DT A C5 1 ATOM 119 C C7 . DT A 1 6 ? -13.011 -6.617 23.366 1.00 50.00 ? 6 DT A C7 1 ATOM 120 C C6 . DT A 1 6 ? -12.339 -4.312 23.996 1.00 50.00 ? 6 DT A C6 1 ATOM 121 P P . DA A 1 7 ? -12.985 2.056 23.525 1.00 50.00 ? 7 DA A P 1 ATOM 122 O OP1 . DA A 1 7 ? -13.010 3.451 24.024 1.00 50.00 ? 7 DA A OP1 1 ATOM 123 O OP2 . DA A 1 7 ? -14.130 1.555 22.721 1.00 50.00 ? 7 DA A OP2 1 ATOM 124 O "O5'" . DA A 1 7 ? -11.602 1.845 22.753 1.00 50.00 ? 7 DA A "O5'" 1 ATOM 125 C "C5'" . DA A 1 7 ? -10.392 2.160 23.422 1.00 50.00 ? 7 DA A "C5'" 1 ATOM 126 C "C4'" . DA A 1 7 ? -9.205 1.827 22.546 1.00 50.00 ? 7 DA A "C4'" 1 ATOM 127 O "O4'" . DA A 1 7 ? -9.155 0.409 22.274 1.00 50.00 ? 7 DA A "O4'" 1 ATOM 128 C "C3'" . DA A 1 7 ? -9.196 2.471 21.165 1.00 50.00 ? 7 DA A "C3'" 1 ATOM 129 O "O3'" . DA A 1 7 ? -7.949 3.144 21.054 1.00 50.00 ? 7 DA A "O3'" 1 ATOM 130 C "C2'" . DA A 1 7 ? -9.341 1.281 20.204 1.00 50.00 ? 7 DA A "C2'" 1 ATOM 131 C "C1'" . DA A 1 7 ? -8.548 0.272 21.008 1.00 50.00 ? 7 DA A "C1'" 1 ATOM 132 N N9 . DA A 1 7 ? -8.534 -1.148 20.650 1.00 50.00 ? 7 DA A N9 1 ATOM 133 C C8 . DA A 1 7 ? -7.433 -1.844 20.242 1.00 50.00 ? 7 DA A C8 1 ATOM 134 N N7 . DA A 1 7 ? -7.655 -3.112 20.013 1.00 50.00 ? 7 DA A N7 1 ATOM 135 C C5 . DA A 1 7 ? -8.987 -3.273 20.308 1.00 50.00 ? 7 DA A C5 1 ATOM 136 C C6 . DA A 1 7 ? -9.824 -4.403 20.269 1.00 50.00 ? 7 DA A C6 1 ATOM 137 N N6 . DA A 1 7 ? -9.403 -5.614 19.899 1.00 50.00 ? 7 DA A N6 1 ATOM 138 N N1 . DA A 1 7 ? -11.114 -4.239 20.629 1.00 50.00 ? 7 DA A N1 1 ATOM 139 C C2 . DA A 1 7 ? -11.519 -3.014 20.990 1.00 50.00 ? 7 DA A C2 1 ATOM 140 N N3 . DA A 1 7 ? -10.824 -1.876 21.067 1.00 50.00 ? 7 DA A N3 1 ATOM 141 C C4 . DA A 1 7 ? -9.549 -2.075 20.708 1.00 50.00 ? 7 DA A C4 1 ATOM 142 P P . DT A 1 8 ? -7.508 3.873 19.705 1.00 50.00 ? 8 DT A P 1 ATOM 143 O OP1 . DT A 1 8 ? -6.456 4.861 20.032 1.00 50.00 ? 8 DT A OP1 1 ATOM 144 O OP2 . DT A 1 8 ? -8.734 4.324 19.012 1.00 50.00 ? 8 DT A OP2 1 ATOM 145 O "O5'" . DT A 1 8 ? -6.874 2.669 18.880 1.00 50.00 ? 8 DT A "O5'" 1 ATOM 146 C "C5'" . DT A 1 8 ? -5.667 2.093 19.331 1.00 50.00 ? 8 DT A "C5'" 1 ATOM 147 C "C4'" . DT A 1 8 ? -4.969 1.350 18.202 1.00 50.00 ? 8 DT A "C4'" 1 ATOM 148 O "O4'" . DT A 1 8 ? -5.625 0.091 17.904 1.00 50.00 ? 8 DT A "O4'" 1 ATOM 149 C "C3'" . DT A 1 8 ? -4.933 2.030 16.848 1.00 50.00 ? 8 DT A "C3'" 1 ATOM 150 O "O3'" . DT A 1 8 ? -3.880 1.411 16.165 1.00 50.00 ? 8 DT A "O3'" 1 ATOM 151 C "C2'" . DT A 1 8 ? -6.260 1.610 16.226 1.00 50.00 ? 8 DT A "C2'" 1 ATOM 152 C "C1'" . DT A 1 8 ? -6.210 0.135 16.612 1.00 50.00 ? 8 DT A "C1'" 1 ATOM 153 N N1 . DT A 1 8 ? -7.484 -0.612 16.753 1.00 50.00 ? 8 DT A N1 1 ATOM 154 C C2 . DT A 1 8 ? -7.389 -1.985 16.708 1.00 50.00 ? 8 DT A C2 1 ATOM 155 O O2 . DT A 1 8 ? -6.335 -2.568 16.537 1.00 50.00 ? 8 DT A O2 1 ATOM 156 N N3 . DT A 1 8 ? -8.566 -2.661 16.864 1.00 50.00 ? 8 DT A N3 1 ATOM 157 C C4 . DT A 1 8 ? -9.806 -2.099 17.064 1.00 50.00 ? 8 DT A C4 1 ATOM 158 O O4 . DT A 1 8 ? -10.800 -2.810 17.190 1.00 50.00 ? 8 DT A O4 1 ATOM 159 C C5 . DT A 1 8 ? -9.830 -0.647 17.108 1.00 50.00 ? 8 DT A C5 1 ATOM 160 C C7 . DT A 1 8 ? -11.112 0.097 17.316 1.00 50.00 ? 8 DT A C7 1 ATOM 161 C C6 . DT A 1 8 ? -8.685 0.028 16.958 1.00 50.00 ? 8 DT A C6 1 ATOM 162 P P . DA A 1 9 ? -3.108 2.277 15.095 1.00 50.00 ? 9 DA A P 1 ATOM 163 O OP1 . DA A 1 9 ? -1.736 2.509 15.598 1.00 50.00 ? 9 DA A OP1 1 ATOM 164 O OP2 . DA A 1 9 ? -3.993 3.416 14.747 1.00 50.00 ? 9 DA A OP2 1 ATOM 165 O "O5'" . DA A 1 9 ? -3.011 1.289 13.853 1.00 50.00 ? 9 DA A "O5'" 1 ATOM 166 C "C5'" . DA A 1 9 ? -2.001 0.313 13.892 1.00 50.00 ? 9 DA A "C5'" 1 ATOM 167 C "C4'" . DA A 1 9 ? -2.533 -0.946 13.258 1.00 50.00 ? 9 DA A "C4'" 1 ATOM 168 O "O4'" . DA A 1 9 ? -3.920 -1.164 13.602 1.00 50.00 ? 9 DA A "O4'" 1 ATOM 169 C "C3'" . DA A 1 9 ? -2.551 -0.926 11.738 1.00 50.00 ? 9 DA A "C3'" 1 ATOM 170 O "O3'" . DA A 1 9 ? -1.431 -1.656 11.278 1.00 50.00 ? 9 DA A "O3'" 1 ATOM 171 C "C2'" . DA A 1 9 ? -3.877 -1.607 11.375 1.00 50.00 ? 9 DA A "C2'" 1 ATOM 172 C "C1'" . DA A 1 9 ? -4.284 -2.197 12.713 1.00 50.00 ? 9 DA A "C1'" 1 ATOM 173 N N9 . DA A 1 9 ? -5.681 -2.586 12.901 1.00 50.00 ? 9 DA A N9 1 ATOM 174 C C8 . DA A 1 9 ? -6.130 -3.870 13.013 1.00 50.00 ? 9 DA A C8 1 ATOM 175 N N7 . DA A 1 9 ? -7.420 -3.971 13.199 1.00 50.00 ? 9 DA A N7 1 ATOM 176 C C5 . DA A 1 9 ? -7.848 -2.665 13.214 1.00 50.00 ? 9 DA A C5 1 ATOM 177 C C6 . DA A 1 9 ? -9.125 -2.106 13.376 1.00 50.00 ? 9 DA A C6 1 ATOM 178 N N6 . DA A 1 9 ? -10.220 -2.849 13.552 1.00 50.00 ? 9 DA A N6 1 ATOM 179 N N1 . DA A 1 9 ? -9.228 -0.759 13.346 1.00 50.00 ? 9 DA A N1 1 ATOM 180 C C2 . DA A 1 9 ? -8.116 -0.031 13.166 1.00 50.00 ? 9 DA A C2 1 ATOM 181 N N3 . DA A 1 9 ? -6.859 -0.452 13.002 1.00 50.00 ? 9 DA A N3 1 ATOM 182 C C4 . DA A 1 9 ? -6.792 -1.791 13.035 1.00 50.00 ? 9 DA A C4 1 ATOM 183 P P . DT A 1 10 ? -1.140 -1.780 9.715 1.00 50.00 ? 10 DT A P 1 ATOM 184 O OP1 . DT A 1 10 ? 0.291 -2.127 9.573 1.00 50.00 ? 10 DT A OP1 1 ATOM 185 O OP2 . DT A 1 10 ? -1.674 -0.586 9.018 1.00 50.00 ? 10 DT A OP2 1 ATOM 186 O "O5'" . DT A 1 10 ? -2.037 -3.041 9.324 1.00 50.00 ? 10 DT A "O5'" 1 ATOM 187 C "C5'" . DT A 1 10 ? -1.456 -4.340 9.271 1.00 50.00 ? 10 DT A "C5'" 1 ATOM 188 C "C4'" . DT A 1 10 ? -2.290 -5.212 8.351 1.00 50.00 ? 10 DT A "C4'" 1 ATOM 189 O "O4'" . DT A 1 10 ? -3.658 -5.223 8.840 1.00 50.00 ? 10 DT A "O4'" 1 ATOM 190 C "C3'" . DT A 1 10 ? -2.331 -4.750 6.891 1.00 50.00 ? 10 DT A "C3'" 1 ATOM 191 O "O3'" . DT A 1 10 ? -2.043 -5.868 5.998 1.00 50.00 ? 10 DT A "O3'" 1 ATOM 192 C "C2'" . DT A 1 10 ? -3.702 -4.072 6.757 1.00 50.00 ? 10 DT A "C2'" 1 ATOM 193 C "C1'" . DT A 1 10 ? -4.543 -4.750 7.844 1.00 50.00 ? 10 DT A "C1'" 1 ATOM 194 N N1 . DT A 1 10 ? -5.647 -3.937 8.491 1.00 50.00 ? 10 DT A N1 1 ATOM 195 C C2 . DT A 1 10 ? -6.761 -4.633 8.915 1.00 50.00 ? 10 DT A C2 1 ATOM 196 O O2 . DT A 1 10 ? -6.869 -5.839 8.792 1.00 50.00 ? 10 DT A O2 1 ATOM 197 N N3 . DT A 1 10 ? -7.748 -3.870 9.490 1.00 50.00 ? 10 DT A N3 1 ATOM 198 C C4 . DT A 1 10 ? -7.733 -2.503 9.685 1.00 50.00 ? 10 DT A C4 1 ATOM 199 O O4 . DT A 1 10 ? -8.668 -1.914 10.212 1.00 50.00 ? 10 DT A O4 1 ATOM 200 C C5 . DT A 1 10 ? -6.550 -1.823 9.222 1.00 50.00 ? 10 DT A C5 1 ATOM 201 C C7 . DT A 1 10 ? -6.451 -0.334 9.385 1.00 50.00 ? 10 DT A C7 1 ATOM 202 C C6 . DT A 1 10 ? -5.572 -2.558 8.652 1.00 50.00 ? 10 DT A C6 1 ATOM 203 P P . DA A 1 11 ? -3.075 -6.702 5.080 1.00 50.00 ? 11 DA A P 1 ATOM 204 O OP1 . DA A 1 11 ? -2.279 -7.752 4.399 1.00 50.00 ? 11 DA A OP1 1 ATOM 205 O OP2 . DA A 1 11 ? -3.832 -5.724 4.264 1.00 50.00 ? 11 DA A OP2 1 ATOM 206 O "O5'" . DA A 1 11 ? -4.092 -7.417 6.102 1.00 50.00 ? 11 DA A "O5'" 1 ATOM 207 C "C5'" . DA A 1 11 ? -4.588 -8.756 5.893 1.00 50.00 ? 11 DA A "C5'" 1 ATOM 208 C "C4'" . DA A 1 11 ? -5.931 -8.812 5.158 1.00 50.00 ? 11 DA A "C4'" 1 ATOM 209 O "O4'" . DA A 1 11 ? -6.970 -7.993 5.780 1.00 50.00 ? 11 DA A "O4'" 1 ATOM 210 C "C3'" . DA A 1 11 ? -5.900 -8.380 3.694 1.00 50.00 ? 11 DA A "C3'" 1 ATOM 211 O "O3'" . DA A 1 11 ? -6.735 -9.246 2.921 1.00 50.00 ? 11 DA A "O3'" 1 ATOM 212 C "C2'" . DA A 1 11 ? -6.481 -6.977 3.793 1.00 50.00 ? 11 DA A "C2'" 1 ATOM 213 C "C1'" . DA A 1 11 ? -7.630 -7.327 4.723 1.00 50.00 ? 11 DA A "C1'" 1 ATOM 214 N N9 . DA A 1 11 ? -8.507 -6.224 5.130 1.00 50.00 ? 11 DA A N9 1 ATOM 215 C C8 . DA A 1 11 ? -9.846 -6.356 5.383 1.00 50.00 ? 11 DA A C8 1 ATOM 216 N N7 . DA A 1 11 ? -10.446 -5.238 5.716 1.00 50.00 ? 11 DA A N7 1 ATOM 217 C C5 . DA A 1 11 ? -9.433 -4.301 5.671 1.00 50.00 ? 11 DA A C5 1 ATOM 218 C C6 . DA A 1 11 ? -9.434 -2.922 5.930 1.00 50.00 ? 11 DA A C6 1 ATOM 219 N N6 . DA A 1 11 ? -10.534 -2.257 6.289 1.00 50.00 ? 11 DA A N6 1 ATOM 220 N N1 . DA A 1 11 ? -8.270 -2.257 5.794 1.00 50.00 ? 11 DA A N1 1 ATOM 221 C C2 . DA A 1 11 ? -7.178 -2.943 5.427 1.00 50.00 ? 11 DA A C2 1 ATOM 222 N N3 . DA A 1 11 ? -7.055 -4.243 5.165 1.00 50.00 ? 11 DA A N3 1 ATOM 223 C C4 . DA A 1 11 ? -8.230 -4.879 5.303 1.00 50.00 ? 11 DA A C4 1 ATOM 224 P P . DT A 1 12 ? -7.520 -8.728 1.616 1.00 50.00 ? 12 DT A P 1 ATOM 225 O OP1 . DT A 1 12 ? -7.549 -9.861 0.664 1.00 50.00 ? 12 DT A OP1 1 ATOM 226 O OP2 . DT A 1 12 ? -6.954 -7.429 1.169 1.00 50.00 ? 12 DT A OP2 1 ATOM 227 O "O5'" . DT A 1 12 ? -9.000 -8.469 2.172 1.00 50.00 ? 12 DT A "O5'" 1 ATOM 228 C "C5'" . DT A 1 12 ? -9.985 -9.500 2.156 1.00 50.00 ? 12 DT A "C5'" 1 ATOM 229 C "C4'" . DT A 1 12 ? -11.298 -8.980 1.587 1.00 50.00 ? 12 DT A "C4'" 1 ATOM 230 O "O4'" . DT A 1 12 ? -11.610 -7.704 2.197 1.00 50.00 ? 12 DT A "O4'" 1 ATOM 231 C "C3'" . DT A 1 12 ? -11.337 -8.754 0.075 1.00 50.00 ? 12 DT A "C3'" 1 ATOM 232 O "O3'" . DT A 1 12 ? -12.599 -9.155 -0.452 1.00 50.00 ? 12 DT A "O3'" 1 ATOM 233 C "C2'" . DT A 1 12 ? -11.124 -7.250 -0.059 1.00 50.00 ? 12 DT A "C2'" 1 ATOM 234 C "C1'" . DT A 1 12 ? -11.841 -6.741 1.190 1.00 50.00 ? 12 DT A "C1'" 1 ATOM 235 N N1 . DT A 1 12 ? -11.413 -5.421 1.758 1.00 50.00 ? 12 DT A N1 1 ATOM 236 C C2 . DT A 1 12 ? -12.249 -4.844 2.688 1.00 50.00 ? 12 DT A C2 1 ATOM 237 O O2 . DT A 1 12 ? -13.295 -5.355 3.046 1.00 50.00 ? 12 DT A O2 1 ATOM 238 N N3 . DT A 1 12 ? -11.819 -3.639 3.186 1.00 50.00 ? 12 DT A N3 1 ATOM 239 C C4 . DT A 1 12 ? -10.656 -2.971 2.859 1.00 50.00 ? 12 DT A C4 1 ATOM 240 O O4 . DT A 1 12 ? -10.377 -1.893 3.371 1.00 50.00 ? 12 DT A O4 1 ATOM 241 C C5 . DT A 1 12 ? -9.819 -3.630 1.881 1.00 50.00 ? 12 DT A C5 1 ATOM 242 C C7 . DT A 1 12 ? -8.530 -3.003 1.436 1.00 50.00 ? 12 DT A C7 1 ATOM 243 C C6 . DT A 1 12 ? -10.228 -4.810 1.390 1.00 50.00 ? 12 DT A C6 1 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DA 3 3 3 DA A A . n A 1 4 DT 4 4 4 DT T A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DT 6 6 6 DT T A . n A 1 7 DA 7 7 7 DA A A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DA 9 9 9 DA A A . n A 1 10 DT 10 10 10 DT T A . n A 1 11 DA 11 11 11 DA A A . n A 1 12 DT 12 12 12 DT T A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 12_555 x,x-y,-z+1/6 0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 36.7545000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-03-07 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 17.8580 _pdbx_refine_tls.origin_y 6.8570 _pdbx_refine_tls.origin_z 89.5250 _pdbx_refine_tls.T[1][1] 0.3179 _pdbx_refine_tls.T[2][2] 0.4424 _pdbx_refine_tls.T[3][3] 0.2198 _pdbx_refine_tls.T[1][2] -0.0465 _pdbx_refine_tls.T[1][3] -0.0543 _pdbx_refine_tls.T[2][3] 0.0078 _pdbx_refine_tls.L[1][1] 3.1157 _pdbx_refine_tls.L[2][2] 8.7648 _pdbx_refine_tls.L[3][3] 18.1706 _pdbx_refine_tls.L[1][2] 1.2362 _pdbx_refine_tls.L[1][3] -6.2853 _pdbx_refine_tls.L[2][3] -9.2344 _pdbx_refine_tls.S[1][1] -0.0855 _pdbx_refine_tls.S[1][2] -0.0718 _pdbx_refine_tls.S[1][3] 0.5401 _pdbx_refine_tls.S[2][1] -0.7330 _pdbx_refine_tls.S[2][2] -0.6916 _pdbx_refine_tls.S[2][3] -0.1924 _pdbx_refine_tls.S[3][1] -0.5044 _pdbx_refine_tls.S[3][2] 1.3114 _pdbx_refine_tls.S[3][3] 0.7770 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 1 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 12 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 12 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 AMoRE phasing . ? 4 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C1'" A DC 1 ? ? "O4'" A DC 1 ? ? "C4'" A DC 1 ? ? 103.99 110.10 -6.11 1.00 N 2 1 "C3'" A DC 1 ? ? "C2'" A DC 1 ? ? "C1'" A DC 1 ? ? 95.94 102.40 -6.46 0.80 N 3 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 113.50 108.30 5.20 0.30 N 4 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.12 108.30 2.82 0.30 N 5 1 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 110.76 108.30 2.46 0.30 N 6 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? N1 A DT 4 ? ? 111.71 108.30 3.41 0.30 N 7 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 110.79 108.30 2.49 0.30 N 8 1 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? "C2'" A DA 7 ? ? 100.74 105.90 -5.16 0.80 N 9 1 "C1'" A DA 9 ? ? "O4'" A DA 9 ? ? "C4'" A DA 9 ? ? 102.01 110.10 -8.09 1.00 N 10 1 "O4'" A DA 9 ? ? "C1'" A DA 9 ? ? N9 A DA 9 ? ? 111.12 108.30 2.82 0.30 N 11 1 "C3'" A DT 10 ? ? "O3'" A DT 10 ? ? P A DA 11 ? ? 128.16 119.70 8.46 1.20 Y 12 1 "C3'" A DA 11 ? ? "C2'" A DA 11 ? ? "C1'" A DA 11 ? ? 96.67 102.40 -5.73 0.80 N 13 1 "O4'" A DA 11 ? ? "C1'" A DA 11 ? ? N9 A DA 11 ? ? 115.22 108.30 6.92 0.30 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 # _ndb_struct_conf_na.entry_id 2AF1 _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 3 1_555 A DT 12 12_555 0.188 -3.044 0.905 -20.004 12.296 70.816 1 A_DA3:DT12_A A 3 ? A 12 ? 23 3 1 A DT 4 1_555 A DA 11 12_555 -0.096 2.880 0.833 -0.817 -3.513 -73.240 2 A_DT4:DA11_A A 4 ? A 11 ? 23 3 1 A DA 5 1_555 A DT 10 12_555 0.103 -3.447 0.827 -11.707 4.863 65.166 3 A_DA5:DT10_A A 5 ? A 10 ? 23 3 1 A DT 6 1_555 A DA 9 12_555 -0.266 2.939 0.304 -12.530 -0.183 -66.018 4 A_DT6:DA9_A A 6 ? A 9 ? 23 3 1 A DA 7 1_555 A DT 8 12_555 -0.566 -2.227 0.297 -15.918 5.878 66.740 5 A_DA7:DT8_A A 7 ? A 8 ? 23 3 1 A DT 8 1_555 A DA 7 12_555 0.566 2.227 -0.297 15.918 -5.878 -66.740 6 A_DT8:DA7_A A 8 ? A 7 ? 23 3 1 A DA 9 1_555 A DT 6 12_555 0.266 -2.939 -0.304 12.530 0.183 66.018 7 A_DA9:DT6_A A 9 ? A 6 ? 23 3 1 A DT 10 1_555 A DA 5 12_555 -0.103 3.447 -0.827 11.707 -4.863 -65.166 8 A_DT10:DA5_A A 10 ? A 5 ? 23 3 1 A DA 11 1_555 A DT 4 12_555 0.096 -2.880 -0.833 0.817 3.513 73.240 9 A_DA11:DT4_A A 11 ? A 4 ? 23 3 1 A DT 12 1_555 A DA 3 12_555 -0.188 3.044 -0.905 20.004 -12.296 -70.816 10 A_DT12:DA3_A A 12 ? A 3 ? 23 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 3 1_555 A DT 12 12_555 A DT 4 1_555 A DA 11 12_555 -2.086 -2.178 -2.935 81.474 -145.259 52.102 -2.034 0.522 -0.507 -75.910 -42.577 167.920 1 AA_DA3DT4:DA11DT12_AA A 3 ? A 12 ? A 4 ? A 11 ? 1 A DT 4 1_555 A DA 11 12_555 A DA 5 1_555 A DT 10 12_555 -1.203 -3.529 3.010 -154.631 78.831 16.883 -2.342 -0.524 -0.083 40.662 79.761 173.635 2 AA_DT4DA5:DT10DA11_AA A 4 ? A 11 ? A 5 ? A 10 ? 1 A DA 5 1_555 A DT 10 12_555 A DT 6 1_555 A DA 9 12_555 -1.372 -3.771 -0.119 82.897 -148.474 161.549 -1.879 0.690 0.301 -74.293 -41.480 178.407 3 AA_DA5DT6:DA9DT10_AA A 5 ? A 10 ? A 6 ? A 9 ? 1 A DT 6 1_555 A DA 9 12_555 A DA 7 1_555 A DT 8 12_555 0.340 3.861 -3.019 151.798 -82.678 -56.879 -2.375 -0.641 -0.079 42.233 77.541 -173.716 4 AA_DT6DA7:DT8DA9_AA A 6 ? A 9 ? A 7 ? A 8 ? 1 A DA 7 1_555 A DT 8 12_555 A DT 8 1_555 A DA 7 12_555 -2.382 -2.864 0.000 69.385 -165.180 180.000 -1.432 1.191 0.000 -82.590 -34.693 180.000 5 AA_DA7DT8:DA7DT8_AA A 7 ? A 8 ? A 8 ? A 7 ? 1 A DT 8 1_555 A DA 7 12_555 A DA 9 1_555 A DT 6 12_555 -0.340 -3.861 3.019 -151.798 82.678 56.879 -2.375 -0.641 0.079 42.233 77.541 173.716 6 AA_DT8DA9:DT6DA7_AA A 8 ? A 7 ? A 9 ? A 6 ? 1 A DA 9 1_555 A DT 6 12_555 A DT 10 1_555 A DA 5 12_555 1.372 3.771 0.119 -82.897 148.474 -161.550 -1.879 0.690 -0.301 -74.293 -41.480 -178.407 7 AA_DA9DT10:DA5DT6_AA A 9 ? A 6 ? A 10 ? A 5 ? 1 A DT 10 1_555 A DA 5 12_555 A DA 11 1_555 A DT 4 12_555 1.203 3.529 -3.010 154.631 -78.831 -16.883 -2.342 -0.524 0.083 40.662 79.761 -173.636 8 AA_DT10DA11:DT4DA5_AA A 10 ? A 5 ? A 11 ? A 4 ? 1 A DA 11 1_555 A DT 4 12_555 A DT 12 1_555 A DA 3 12_555 2.086 2.178 2.935 -81.474 145.259 -52.102 -2.034 0.522 0.507 -75.910 -42.577 -167.920 9 AA_DA11DT12:DA3DT4_AA A 11 ? A 4 ? A 12 ? A 3 ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1GQU _pdbx_initial_refinement_model.details 'pdb entry 1GQU' #