0.020044 0.000000 0.000000 0.000000 0.020044 0.000000 0.000000 0.000000 0.010921 0.00000 0.00000 0.00000 Smith, K.J. Petit, C.M. Aubart, K. Smyth, M. McManus, E. Jones, J. Fosberry, A. Lewis, C. Lonetto, M. Christensen, S.B. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 49.889 49.889 91.565 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Ni 2 58.693 NICKEL (II) ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C10 H15 N O2 181.232 [HYDROXY(3-PHENYLPROPYL)AMINO]METHANOL SB-485345 non-polymer C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N NI N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C Y 261 N C N 262 N O N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N N N 275 S C N 276 N C N 277 N O N 278 N C N 279 N C N 280 N C N 281 N O N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H Y 291 N C Y 292 N C Y 293 N C Y 294 N C Y 295 N C Y 296 N C N 297 N C N 298 N C N 299 N C N 300 N N N 301 N O N 302 N C N 303 N O N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N N N 320 S C N 321 N C N 322 N O N 323 N C N 324 N O N 325 N O N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N S N 334 N O N 335 N O N 336 N O N 337 N O N 338 N N N 339 S C N 340 N C N 341 N O N 342 R C N 343 N O N 344 N C N 345 N O N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N N N 356 S C N 357 N C N 358 N O N 359 N C Y 360 N C Y 361 N C Y 362 N C Y 363 N C Y 364 N C Y 365 N C N 366 N O N 367 N O N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N N N 380 S C N 381 N C N 382 N O N 383 N C N 384 N C N 385 N C N 386 N O N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing Y 277 N doub Y 278 N sing N 279 N sing Y 280 N sing N 281 N sing Y 282 N doub N 283 N sing Y 284 N sing N 285 N sing Y 286 N doub N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N doub N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N doub N 319 N doub N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N doub N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N doub N 345 N sing N 346 N sing N 347 N sing N 348 N sing Y 349 N doub Y 350 N sing Y 351 N sing N 352 N sing Y 353 N doub N 354 N sing Y 355 N doub N 356 N sing Y 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N doub N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing US Protein Sci. PRCIEI 0795 0961-8368 12 349 360 10.1110/ps.0229303 12538898 Structural Variation and inhibitor binding in polypeptide deformylase from four different bacterial species 2003 10.2210/pdb2ai7/pdb pdb_00002ai7 1 MAD M x-ray 1 1.0 22682.037 Peptide deformylase 3.5.1.88 1 man polymer 58.693 NICKEL (II) ION 1 syn non-polymer 96.063 SULFATE ION 1 syn non-polymer 181.232 [HYDROXY(3-PHENYLPROPYL)AMINO]METHANOL 1 syn non-polymer 18.015 water 137 nat water PDF, Polypeptide deformylase no no MSAIERISKAAHLIDMCDIIREGNPSLRTVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQLDI SKRIIAVLVPNIVEEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGEGCLSVDRNVPGYVVRHARVTVDYFDKDGEKHR IKLKGYNSIVVQHEIDHINGIMFYDRINEKDPFAVKDGLLILE MSAIERISKAAHLIDMCDIIREGNPSLRTVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQLDI SKRIIAVLVPNIVEEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGEGCLSVDRNVPGYVVRHARVTVDYFDKDGEKHR IKLKGYNSIVVQHEIDHINGIMFYDRINEKDPFAVKDGLLILE A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Streptococcus ATCC BAA-255 R6 Escherichia sample def 1313 Streptococcus pneumoniae 562 Escherichia coli 1 3.1 60.6 chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2005-09-06 1 1 2008-04-30 1 2 2011-07-13 1 3 2024-02-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2005-07-29 REL REL NI NICKEL (II) ION SO4 SULFATE ION SB7 [HYDROXY(3-PHENYLPROPYL)AMINO]METHANOL HOH water NI 301 2 NI NI 301 A SO4 3001 3 SO4 SO4 3001 A SB7 300 4 SB7 SB7 300 A TIP 1 5 HOH HOH 3002 A TIP 2 5 HOH HOH 3003 A TIP 3 5 HOH HOH 3004 A TIP 4 5 HOH HOH 3005 A TIP 5 5 HOH HOH 3006 A TIP 6 5 HOH HOH 3007 A TIP 7 5 HOH HOH 3008 A TIP 8 5 HOH HOH 3009 A TIP 9 5 HOH HOH 3010 A TIP 10 5 HOH HOH 3011 A TIP 11 5 HOH HOH 3012 A TIP 12 5 HOH HOH 3013 A TIP 13 5 HOH HOH 3014 A TIP 14 5 HOH HOH 3015 A TIP 15 5 HOH HOH 3016 A TIP 16 5 HOH HOH 3017 A TIP 17 5 HOH HOH 3018 A TIP 18 5 HOH HOH 3019 A TIP 19 5 HOH HOH 3020 A TIP 20 5 HOH HOH 3021 A TIP 21 5 HOH HOH 3022 A TIP 22 5 HOH HOH 3023 A TIP 23 5 HOH HOH 3024 A TIP 24 5 HOH HOH 3025 A TIP 25 5 HOH HOH 3026 A TIP 26 5 HOH HOH 3027 A TIP 27 5 HOH HOH 3028 A TIP 28 5 HOH HOH 3029 A TIP 29 5 HOH HOH 3030 A TIP 30 5 HOH HOH 3031 A TIP 31 5 HOH HOH 3032 A TIP 32 5 HOH HOH 3033 A TIP 33 5 HOH HOH 3034 A TIP 34 5 HOH HOH 3035 A TIP 35 5 HOH HOH 3036 A TIP 36 5 HOH HOH 3037 A TIP 37 5 HOH HOH 3038 A TIP 38 5 HOH HOH 3039 A TIP 39 5 HOH HOH 3040 A TIP 40 5 HOH HOH 3041 A TIP 41 5 HOH HOH 3042 A TIP 42 5 HOH HOH 3043 A TIP 43 5 HOH HOH 3044 A TIP 44 5 HOH HOH 3045 A TIP 45 5 HOH HOH 3046 A TIP 46 5 HOH HOH 3047 A TIP 47 5 HOH HOH 3048 A TIP 48 5 HOH HOH 3049 A TIP 49 5 HOH HOH 3050 A TIP 50 5 HOH HOH 3051 A TIP 51 5 HOH HOH 3052 A TIP 52 5 HOH HOH 3053 A TIP 53 5 HOH HOH 3054 A TIP 54 5 HOH HOH 3055 A TIP 55 5 HOH HOH 3056 A TIP 56 5 HOH HOH 3057 A TIP 57 5 HOH HOH 3058 A TIP 58 5 HOH HOH 3059 A TIP 59 5 HOH HOH 3060 A TIP 60 5 HOH HOH 3061 A TIP 61 5 HOH HOH 3062 A TIP 62 5 HOH HOH 3063 A TIP 63 5 HOH HOH 3064 A TIP 64 5 HOH HOH 3065 A TIP 65 5 HOH HOH 3066 A TIP 66 5 HOH HOH 3067 A TIP 67 5 HOH HOH 3068 A TIP 68 5 HOH HOH 3069 A TIP 69 5 HOH HOH 3070 A TIP 70 5 HOH HOH 3071 A TIP 71 5 HOH HOH 3072 A TIP 72 5 HOH HOH 3073 A TIP 73 5 HOH HOH 3074 A TIP 74 5 HOH HOH 3075 A TIP 75 5 HOH HOH 3076 A TIP 76 5 HOH HOH 3077 A TIP 77 5 HOH HOH 3078 A TIP 78 5 HOH HOH 3079 A TIP 79 5 HOH HOH 3080 A TIP 80 5 HOH HOH 3081 A TIP 81 5 HOH HOH 3082 A TIP 82 5 HOH HOH 3083 A TIP 83 5 HOH HOH 3084 A TIP 84 5 HOH HOH 3085 A TIP 85 5 HOH HOH 3086 A TIP 86 5 HOH HOH 3087 A TIP 87 5 HOH HOH 3088 A TIP 88 5 HOH HOH 3089 A TIP 89 5 HOH HOH 3090 A TIP 90 5 HOH HOH 3091 A TIP 91 5 HOH HOH 3092 A TIP 92 5 HOH HOH 3093 A TIP 93 5 HOH HOH 3094 A TIP 94 5 HOH HOH 3095 A TIP 95 5 HOH HOH 3096 A TIP 96 5 HOH HOH 3097 A TIP 97 5 HOH HOH 3098 A TIP 98 5 HOH HOH 3099 A TIP 99 5 HOH HOH 3100 A TIP 100 5 HOH HOH 3101 A TIP 101 5 HOH HOH 3102 A TIP 102 5 HOH HOH 3103 A TIP 103 5 HOH HOH 3104 A TIP 104 5 HOH HOH 3105 A TIP 105 5 HOH HOH 3106 A TIP 106 5 HOH HOH 3107 A TIP 107 5 HOH HOH 3108 A TIP 108 5 HOH HOH 3109 A TIP 109 5 HOH HOH 3110 A TIP 110 5 HOH HOH 3111 A TIP 111 5 HOH HOH 3112 A TIP 112 5 HOH HOH 3113 A TIP 113 5 HOH HOH 3114 A TIP 114 5 HOH HOH 3115 A TIP 115 5 HOH HOH 3116 A TIP 116 5 HOH HOH 3117 A TIP 117 5 HOH HOH 3118 A TIP 118 5 HOH HOH 3119 A TIP 119 5 HOH HOH 3120 A TIP 120 5 HOH HOH 3121 A TIP 121 5 HOH HOH 3122 A TIP 122 5 HOH HOH 3123 A TIP 123 5 HOH HOH 3124 A TIP 124 5 HOH HOH 3125 A TIP 125 5 HOH HOH 3126 A TIP 126 5 HOH HOH 3127 A TIP 127 5 HOH HOH 3128 A TIP 128 5 HOH HOH 3129 A TIP 129 5 HOH HOH 3130 A TIP 130 5 HOH HOH 3131 A TIP 131 5 HOH HOH 3132 A TIP 132 5 HOH HOH 3133 A TIP 133 5 HOH HOH 3134 A TIP 134 5 HOH HOH 3135 A TIP 135 5 HOH HOH 3136 A TIP 136 5 HOH HOH 3137 A TIP 137 5 HOH HOH 3138 A n 1 0 A SER 1 n 2 SER 1 A ALA 2 n 3 ALA 2 A ILE 3 n 4 ILE 3 A GLU 4 n 5 GLU 4 A ARG 5 n 6 ARG 5 A ILE 6 n 7 ILE 6 A SER 7 n 8 SER 7 A LYS 8 n 9 LYS 8 A ALA 9 n 10 ALA 9 A ALA 10 n 11 ALA 10 A HIS 11 n 12 HIS 11 A LEU 12 n 13 LEU 12 A ILE 13 n 14 ILE 13 A ASP 14 n 15 ASP 14 A MET 15 n 16 MET 15 A CYS 16 n 17 CYS 16 A ASP 17 n 18 ASP 17 A ILE 18 n 19 ILE 18 A ILE 19 n 20 ILE 19 A ARG 20 n 21 ARG 20 A GLU 21 n 22 GLU 21 A GLY 22 n 23 GLY 22 A ASN 23 n 24 ASN 23 A PRO 24 n 25 PRO 24 A SER 25 n 26 SER 25 A LEU 26 n 27 LEU 26 A ARG 27 n 28 ARG 27 A THR 28 n 29 THR 28 A VAL 29 n 30 VAL 29 A ALA 30 n 31 ALA 30 A GLU 31 n 32 GLU 31 A GLU 32 n 33 GLU 32 A VAL 33 n 34 VAL 33 A THR 34 n 35 THR 34 A PHE 35 n 36 PHE 35 A PRO 36 n 37 PRO 36 A LEU 37 n 38 LEU 37 A SER 38 n 39 SER 38 A ASP 39 n 40 ASP 39 A GLN 40 n 41 GLN 40 A GLU 41 n 42 GLU 41 A ILE 42 n 43 ILE 42 A ILE 43 n 44 ILE 43 A LEU 44 n 45 LEU 44 A GLY 45 n 46 GLY 45 A GLU 46 n 47 GLU 46 A LYS 47 n 48 LYS 47 A MET 48 n 49 MET 48 A MET 49 n 50 MET 49 A GLN 50 n 51 GLN 50 A PHE 51 n 52 PHE 51 A LEU 52 n 53 LEU 52 A LYS 53 n 54 LYS 53 A HIS 54 n 55 HIS 54 A SER 55 n 56 SER 55 A GLN 56 n 57 GLN 56 A ASP 57 n 58 ASP 57 A PRO 58 n 59 PRO 58 A VAL 59 n 60 VAL 59 A MET 60 n 61 MET 60 A ALA 61 n 62 ALA 61 A GLU 62 n 63 GLU 62 A LYS 63 n 64 LYS 63 A MET 64 n 65 MET 64 A GLY 65 n 66 GLY 65 A LEU 66 n 67 LEU 66 A ARG 67 n 68 ARG 67 A GLY 68 n 69 GLY 68 A GLY 69 n 70 GLY 69 A VAL 70 n 71 VAL 70 A GLY 71 n 72 GLY 71 A LEU 72 n 73 LEU 72 A ALA 73 n 74 ALA 73 A ALA 74 n 75 ALA 74 A PRO 75 n 76 PRO 75 A GLN 76 n 77 GLN 76 A LEU 77 n 78 LEU 77 A ASP 78 n 79 ASP 78 A ILE 79 n 80 ILE 79 A SER 80 n 81 SER 80 A LYS 81 n 82 LYS 81 A ARG 82 n 83 ARG 82 A ILE 83 n 84 ILE 83 A ILE 84 n 85 ILE 84 A ALA 85 n 86 ALA 85 A VAL 86 n 87 VAL 86 A LEU 87 n 88 LEU 87 A VAL 88 n 89 VAL 88 A PRO 89 n 90 PRO 89 A ASN 90 n 91 ASN 90 A ILE 91 n 92 ILE 91 A n 93 92 A n 94 93 A n 95 94 A n 96 95 A n 97 96 A n 98 97 A n 99 98 A n 100 99 A GLU 100 n 101 GLU 100 A ALA 101 n 102 ALA 101 A TYR 102 n 103 TYR 102 A ASP 103 n 104 ASP 103 A LEU 104 n 105 LEU 104 A GLU 105 n 106 GLU 105 A ALA 106 n 107 ALA 106 A ILE 107 n 108 ILE 107 A MET 108 n 109 MET 108 A TYR 109 n 110 TYR 109 A ASN 110 n 111 ASN 110 A PRO 111 n 112 PRO 111 A LYS 112 n 113 LYS 112 A ILE 113 n 114 ILE 113 A VAL 114 n 115 VAL 114 A SER 115 n 116 SER 115 A HIS 116 n 117 HIS 116 A SER 117 n 118 SER 117 A VAL 118 n 119 VAL 118 A GLN 119 n 120 GLN 119 A ASP 120 n 121 ASP 120 A ALA 121 n 122 ALA 121 A ALA 122 n 123 ALA 122 A LEU 123 n 124 LEU 123 A GLY 124 n 125 GLY 124 A GLU 125 n 126 GLU 125 A GLY 126 n 127 GLY 126 A GLU 128 n 128 GLU 128 A GLY 129 n 129 GLY 129 A CYS 130 n 130 CYS 130 A LEU 131 n 131 LEU 131 A SER 132 n 132 SER 132 A VAL 133 n 133 VAL 133 A ASP 134 n 134 ASP 134 A ARG 135 n 135 ARG 135 A ASN 136 n 136 ASN 136 A VAL 137 n 137 VAL 137 A PRO 138 n 138 PRO 138 A GLY 139 n 139 GLY 139 A TYR 140 n 140 TYR 140 A VAL 141 n 141 VAL 141 A VAL 142 n 142 VAL 142 A ARG 143 n 143 ARG 143 A HIS 144 n 144 HIS 144 A ALA 145 n 145 ALA 145 A ARG 146 n 146 ARG 146 A VAL 147 n 147 VAL 147 A THR 148 n 148 THR 148 A VAL 149 n 149 VAL 149 A ASP 150 n 150 ASP 150 A TYR 151 n 151 TYR 151 A PHE 152 n 152 PHE 152 A ASP 153 n 153 ASP 153 A LYS 154 n 154 LYS 154 A ASP 155 n 155 ASP 155 A GLY 156 n 156 GLY 156 A GLU 157 n 157 GLU 157 A LYS 158 n 158 LYS 158 A HIS 159 n 159 HIS 159 A ARG 160 n 160 ARG 160 A ILE 161 n 161 ILE 161 A LYS 162 n 162 LYS 162 A LEU 163 n 163 LEU 163 A LYS 164 n 164 LYS 164 A GLY 165 n 165 GLY 165 A TYR 166 n 166 TYR 166 A ASN 167 n 167 ASN 167 A SER 168 n 168 SER 168 A ILE 169 n 169 ILE 169 A VAL 170 n 170 VAL 170 A VAL 171 n 171 VAL 171 A GLN 172 n 172 GLN 172 A HIS 173 n 173 HIS 173 A GLU 174 n 174 GLU 174 A ILE 175 n 175 ILE 175 A ASP 176 n 176 ASP 176 A HIS 177 n 177 HIS 177 A ILE 178 n 178 ILE 178 A ASN 179 n 179 ASN 179 A GLY 180 n 180 GLY 180 A ILE 181 n 181 ILE 181 A MET 182 n 182 MET 182 A PHE 183 n 183 PHE 183 A TYR 184 n 184 TYR 184 A ASP 185 n 185 ASP 185 A ARG 186 n 186 ARG 186 A ILE 187 n 187 ILE 187 A ASN 188 n 188 ASN 188 A GLU 189 n 189 GLU 189 A LYS 190 n 190 LYS 190 A ASP 191 n 191 ASP 191 A PRO 192 n 192 PRO 192 A PHE 193 n 193 PHE 193 A ALA 194 n 194 ALA 194 A VAL 195 n 195 VAL 195 A LYS 196 n 196 LYS 196 A ASP 197 n 197 ASP 197 A GLY 198 n 198 GLY 198 A LEU 199 n 199 LEU 199 A LEU 200 n 200 LEU 200 A ILE 201 n 201 ILE 201 A LEU 202 n 202 LEU 202 A GLU 203 n 203 GLU 203 A author_defined_assembly 1 monomeric A CYS 130 A SG CYS 130 1_555 A NI 301 B NI NI 1_555 A HIS 173 A NE2 HIS 173 1_555 118.6 A CYS 130 A SG CYS 130 1_555 A NI 301 B NI NI 1_555 A HIS 177 A NE2 HIS 177 1_555 96.6 A HIS 173 A NE2 HIS 173 1_555 A NI 301 B NI NI 1_555 A HIS 177 A NE2 HIS 177 1_555 102.4 A CYS 130 A SG CYS 130 1_555 A NI 301 B NI NI 1_555 A SB7 300 D O22 SB7 1_555 85.4 A HIS 173 A NE2 HIS 173 1_555 A NI 301 B NI NI 1_555 A SB7 300 D O22 SB7 1_555 113.2 A HIS 177 A NE2 HIS 177 1_555 A NI 301 B NI NI 1_555 A SB7 300 D O22 SB7 1_555 138.2 A CYS 130 A SG CYS 130 1_555 A NI 301 B NI NI 1_555 A SB7 300 D O25 SB7 1_555 140.9 A HIS 173 A NE2 HIS 173 1_555 A NI 301 B NI NI 1_555 A SB7 300 D O25 SB7 1_555 100.0 A HIS 177 A NE2 HIS 177 1_555 A NI 301 B NI NI 1_555 A SB7 300 D O25 SB7 1_555 80.1 A SB7 300 D O22 SB7 1_555 A NI 301 B NI NI 1_555 A SB7 300 D O25 SB7 1_555 73.0 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LEU 72 A N LEU 73 A O ALA 85 A O ALA 86 A N VAL 88 A N VAL 89 A O ASP 103 A O ASP 104 A N LYS 112 A N LYS 113 A O ASP 150 A O ASP 150 A N TYR 151 A N TYR 151 A O HIS 159 A O HIS 159 A O ARG 143 A O ARG 143 A N ALA 121 A N ALA 122 A N ALA 122 A N ALA 123 A O LEU 202 A O LEU 202 1 A MET 0 A MET 1 1 Y 1 A VAL 92 A VAL 93 1 Y 1 A GLU 93 A GLU 94 1 Y 1 A GLU 94 A GLU 95 1 Y 1 A GLY 95 A GLY 96 1 Y 1 A GLU 96 A GLU 97 1 Y 1 A THR 97 A THR 98 1 Y 1 A PRO 98 A PRO 99 1 Y 1 A GLN 99 A GLN 100 1 Y 1 A ARG 135 174.79 158.58 CNS_TOPPAR:protein_rep.param ion.param CNS_TOPPAR:water.param PEG_mod.param sb4.par 29.697 -4.741 0.000 0.000 -4.741 0.000 9.483 0.263 0.22 2.000 20.000 1521 15032 15032 10.100 99.400 15032 1 0.00 MAD 66.726 2.000 20.000 137 1675 19 0 1519 2.0 20.0 2AI7 17182 17182 0.056 1 20.9 3.5 98.6 2.0 2.05 2.5 0.228 98.3 refinement Axel T. Brunger axel.brunger@yale.edu Fortran_77 http://cns.csb.yale.edu/v1.1/ CNS package data extraction PDB sw-help@rcsb.rutgers.edu May. 30, 2005 C++ http://pdb.rutgers.edu/software/ PDB_EXTRACT package 1.700 S.pneumoniae Polypeptide Deformylase complexed with SB-485345 1 N N 2 N N 3 N N 4 N N 5 N N A SER 1 A SER 2 HELX_P A SER 7 A SER 8 1 1 7 A ASP 14 A ASP 15 HELX_P A ILE 18 A ILE 19 5 2 5 A ASN 23 A ASN 24 HELX_P A THR 28 A THR 29 5 3 6 A SER 38 A SER 39 HELX_P A ASP 57 A ASP 58 1 4 20 A ASP 57 A ASP 58 HELX_P A MET 64 A MET 65 1 5 8 A PRO 75 A PRO 76 HELX_P A ASP 78 A ASP 79 5 6 4 A LYS 164 A LYS 164 HELX_P A ILE 178 A ILE 178 1 7 15 A MET 182 A MET 182 HELX_P A ILE 187 A ILE 187 5 8 6 metalc 2.460 A CYS 130 A SG CYS 130 1_555 A NI 301 B NI NI 1_555 metalc 2.192 A HIS 173 A NE2 HIS 173 1_555 A NI 301 B NI NI 1_555 metalc 2.181 A HIS 177 A NE2 HIS 177 1_555 A NI 301 B NI NI 1_555 metalc 2.463 A SB7 300 D O22 SB7 1_555 A NI 301 B NI NI 1_555 metalc 2.402 A SB7 300 D O25 SB7 1_555 A NI 301 B NI NI 1_555 HYDROLASE Hydrolase A PHE 35 A PHE 36 1 A PRO 36 A PRO 37 0.20 DEF_STRR6 UNP 1 0 Q8DP79 MSAIERITKAAHLIDMNDIIREGNPTLRTVAEEVTFPLSDQEIILGEKMMQFLKHSQDPVMAEKMGLRGGVGLAAPQLDI SKRIIAVLVPNIVEEGETPQEAYDLEAIMYNPKIVSHSVQDAALGEGEGCLSVDRNVPGYVVRHARVTVDYFDKDGEKHR IKLKGYNSIVVQHEIDHINGIMFYDRINEKDPFAVKDGLLILE 0 202 2AI7 0 202 Q8DP79 A 1 1 202 1 THR conflict SER 7 2AI7 A Q8DP79 UNP 7 8 1 ASN conflict CYS 16 2AI7 A Q8DP79 UNP 16 17 1 THR conflict SER 25 2AI7 A Q8DP79 UNP 25 26 5 3 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel A GLY 71 A GLY 72 A ALA 73 A ALA 74 A ILE 83 A ILE 84 A PRO 89 A PRO 90 A TYR 102 A TYR 103 A HIS 116 A HIS 117 A VAL 147 A VAL 147 A PHE 152 A PHE 152 A LYS 158 A LYS 158 A LEU 163 A LEU 163 A ARG 143 A ARG 143 A HIS 144 A HIS 144 A ASP 120 A ASP 121 A LEU 123 A LEU 124 A LEU 199 A LEU 199 A LEU 202 A LEU 202 BINDING SITE FOR RESIDUE NI A 301 A NI 301 Software 5 BINDING SITE FOR RESIDUE SO4 A 3001 A SO4 3001 Software 6 BINDING SITE FOR RESIDUE SB7 A 300 A SB7 300 Software 11 A GLN 76 A GLN 77 5 1_555 A CYS 130 A CYS 130 5 1_555 A HIS 173 A HIS 173 5 1_555 A HIS 177 A HIS 177 5 1_555 A SB7 300 D SB7 5 1_555 A THR 34 A THR 35 6 4_565 A SER 117 A SER 118 6 1_555 A ARG 146 A ARG 146 6 1_555 A HOH 3031 E HOH 6 1_555 A HOH 3087 E HOH 6 1_555 A HOH 3088 E HOH 6 1_555 A GLY 71 A GLY 72 11 1_555 A GLN 76 A GLN 77 11 1_555 A LEU 123 A LEU 124 11 1_555 A GLU 128 A GLU 128 11 1_555 A GLY 129 A GLY 129 11 1_555 A CYS 130 A CYS 130 11 1_555 A LEU 131 A LEU 131 11 1_555 A HIS 173 A HIS 173 11 1_555 A GLU 174 A GLU 174 11 1_555 A HIS 177 A HIS 177 11 1_555 A NI 301 B NI 11 1_555 78 P 43