0.012598
0.007273
0.000000
0.000000
0.014546
0.000000
0.000000
0.000000
0.002977
0.00000
0.00000
0.00000
Roussel, A.
Lescar, J.
Vaney, M.C.
Wengler, G.
Wengler, G.
Rey, F.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
79.380
79.380
335.910
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
Structure
STRUE6
2005
0969-2126
14
75
86
10.1016/j.str.2005.09.014
16407067
Structure and interactions at the viral surface of the envelope protein E1 of Semliki Forest virus.
2006
US
Cell(Cambridge,Mass.)
CELLB5
0998
0092-8674
105
137
148
10.1016/S0092-8674(01)00303-8
11301009
The fusion glycoprotein shell of Semliki Forest Virus: an icosahedral assembly primed for fusogenic activation at endosomal pH.
2001
UK
Nature
NATUAS
0006
0028-0836
427
320
325
10.1038/nature02239
14737160
Conformational change and protein-protein interactions of the fusion protein of Semliki Forest virus.
2004
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
1998-09-29
GRAPHITE
SINGLE WAVELENGTH
M
x-ray
1
0.945
1.0
BM14
ESRF
0.945
SYNCHROTRON
ESRF BEAMLINE BM14
42690.125
Structural polyprotein (P130)
Spike glycoprotein E1
1
nat
polymer
18.015
water
88
nat
water
no
no
YEHSTVMPNVVGFPYKAHIERPGYSPLTLQMQVVETSLEPTLNLEYITCEYKTVVPSPYVKCCGASECSTKEKPDYQCKV
YTGVYPFMWGGAYCFCDSENTQLSEAYVDRSDVCRHDHASAYKAHTASLKAKVRVMYGNVNQTVDVYVNGDHAVTIGGTQ
FIFGPLSSAWTPFDNKIVVYKDEVFNQDFPPYGSGQPGRFGDIQSRTVESNDLYANTALKLARPSPGMVHVPYTQTPSGF
KYWLKEKGTALNTKAPFGCQIKTNPVRAMNCAVGNIPVSMNLPDSAFTRIVEAPTIIDLTCTVATCTHSSDFGGVLTLTY
KTNKNGDCSVHSHSNVATLQEATAKVKTAGKVTLHFSTASASPSFVVSLCSARATCSASCEPPKDHIVPYA
YEHSTVMPNVVGFPYKAHIERPGYSPLTLQMQVVETSLEPTLNLEYITCEYKTVVPSPYVKCCGASECSTKEKPDYQCKV
YTGVYPFMWGGAYCFCDSENTQLSEAYVDRSDVCRHDHASAYKAHTASLKAKVRVMYGNVNQTVDVYVNGDHAVTIGGTQ
FIFGPLSSAWTPFDNKIVVYKDEVFNQDFPPYGSGQPGRFGDIQSRTVESNDLYANTALKLARPSPGMVHVPYTQTPSGF
KYWLKEKGTALNTKAPFGCQIKTNPVRAMNCAVGNIPVSMNLPDSAFTRIVEAPTIIDLTCTVATCTHSSDFGGVLTLTY
KTNKNGDCSVHSHSNVATLQEATAKVKTAGKVTLHFSTASASPSFVVSLCSARATCSASCEPPKDHIVPYA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Alphavirus
sample
11033
Semliki forest virus
1
3.6
63
EVAPORATION
8.1
PEG 8K, pH 8.1, EVAPORATION, temperature 293K
293
repository
Initial release
Version format compliance
Advisory
Refinement description
Version format compliance
1
0
2006-01-17
1
1
2008-04-30
1
2
2011-07-13
Crystal Structure Of The Fusion Glycoprotein E1 From Semliki Forest Virus. Only the Carbon alpha atoms.
Crystal Structure Of The Homotrimer Of Fusion Glycoprotein E1 From Semliki Forest Virus in its post-fusion trimeric form.
RCSB
Y
RCSB
2005-08-05
REL
REL
HOH
water
HOH
1
2
HOH
HOH
392
A
HOH
2
2
HOH
HOH
393
A
HOH
3
2
HOH
HOH
394
A
HOH
4
2
HOH
HOH
395
A
HOH
5
2
HOH
HOH
396
A
HOH
6
2
HOH
HOH
397
A
HOH
7
2
HOH
HOH
398
A
HOH
8
2
HOH
HOH
399
A
HOH
9
2
HOH
HOH
400
A
HOH
10
2
HOH
HOH
401
A
HOH
11
2
HOH
HOH
402
A
HOH
12
2
HOH
HOH
403
A
HOH
13
2
HOH
HOH
404
A
HOH
14
2
HOH
HOH
405
A
HOH
15
2
HOH
HOH
406
A
HOH
16
2
HOH
HOH
407
A
HOH
17
2
HOH
HOH
408
A
HOH
18
2
HOH
HOH
409
A
HOH
19
2
HOH
HOH
410
A
HOH
20
2
HOH
HOH
411
A
HOH
21
2
HOH
HOH
412
A
HOH
22
2
HOH
HOH
413
A
HOH
23
2
HOH
HOH
414
A
HOH
24
2
HOH
HOH
415
A
HOH
25
2
HOH
HOH
416
A
HOH
26
2
HOH
HOH
417
A
HOH
27
2
HOH
HOH
418
A
HOH
28
2
HOH
HOH
419
A
HOH
29
2
HOH
HOH
420
A
HOH
30
2
HOH
HOH
421
A
HOH
31
2
HOH
HOH
422
A
HOH
32
2
HOH
HOH
423
A
HOH
33
2
HOH
HOH
424
A
HOH
34
2
HOH
HOH
425
A
HOH
35
2
HOH
HOH
426
A
HOH
36
2
HOH
HOH
427
A
HOH
37
2
HOH
HOH
428
A
HOH
38
2
HOH
HOH
429
A
HOH
39
2
HOH
HOH
430
A
HOH
40
2
HOH
HOH
431
A
HOH
41
2
HOH
HOH
432
A
HOH
42
2
HOH
HOH
433
A
HOH
43
2
HOH
HOH
434
A
HOH
44
2
HOH
HOH
435
A
HOH
45
2
HOH
HOH
436
A
HOH
46
2
HOH
HOH
437
A
HOH
47
2
HOH
HOH
438
A
HOH
48
2
HOH
HOH
439
A
HOH
49
2
HOH
HOH
440
A
HOH
50
2
HOH
HOH
441
A
HOH
51
2
HOH
HOH
442
A
HOH
52
2
HOH
HOH
443
A
HOH
53
2
HOH
HOH
444
A
HOH
54
2
HOH
HOH
445
A
HOH
55
2
HOH
HOH
446
A
HOH
56
2
HOH
HOH
447
A
HOH
57
2
HOH
HOH
448
A
HOH
58
2
HOH
HOH
449
A
HOH
59
2
HOH
HOH
450
A
HOH
60
2
HOH
HOH
451
A
HOH
61
2
HOH
HOH
452
A
HOH
62
2
HOH
HOH
453
A
HOH
63
2
HOH
HOH
454
A
HOH
64
2
HOH
HOH
455
A
HOH
65
2
HOH
HOH
456
A
HOH
66
2
HOH
HOH
457
A
HOH
67
2
HOH
HOH
458
A
HOH
68
2
HOH
HOH
459
A
HOH
69
2
HOH
HOH
460
A
HOH
70
2
HOH
HOH
461
A
HOH
71
2
HOH
HOH
462
A
HOH
72
2
HOH
HOH
463
A
HOH
73
2
HOH
HOH
464
A
HOH
74
2
HOH
HOH
465
A
HOH
75
2
HOH
HOH
466
A
HOH
76
2
HOH
HOH
467
A
HOH
77
2
HOH
HOH
468
A
HOH
78
2
HOH
HOH
469
A
HOH
79
2
HOH
HOH
470
A
HOH
80
2
HOH
HOH
471
A
HOH
81
2
HOH
HOH
472
A
HOH
82
2
HOH
HOH
473
A
HOH
83
2
HOH
HOH
474
A
HOH
84
2
HOH
HOH
475
A
HOH
85
2
HOH
HOH
476
A
HOH
86
2
HOH
HOH
477
A
HOH
87
2
HOH
HOH
478
A
HOH
88
2
HOH
HOH
479
A
TYR
1
n
1
TYR
1
A
GLU
2
n
2
GLU
2
A
HIS
3
n
3
HIS
3
A
SER
4
n
4
SER
4
A
THR
5
n
5
THR
5
A
VAL
6
n
6
VAL
6
A
MET
7
n
7
MET
7
A
PRO
8
n
8
PRO
8
A
ASN
9
n
9
ASN
9
A
VAL
10
n
10
VAL
10
A
VAL
11
n
11
VAL
11
A
GLY
12
n
12
GLY
12
A
PHE
13
n
13
PHE
13
A
PRO
14
n
14
PRO
14
A
TYR
15
n
15
TYR
15
A
LYS
16
n
16
LYS
16
A
ALA
17
n
17
ALA
17
A
HIS
18
n
18
HIS
18
A
ILE
19
n
19
ILE
19
A
GLU
20
n
20
GLU
20
A
ARG
21
n
21
ARG
21
A
PRO
22
n
22
PRO
22
A
GLY
23
n
23
GLY
23
A
TYR
24
n
24
TYR
24
A
SER
25
n
25
SER
25
A
PRO
26
n
26
PRO
26
A
LEU
27
n
27
LEU
27
A
THR
28
n
28
THR
28
A
LEU
29
n
29
LEU
29
A
GLN
30
n
30
GLN
30
A
MET
31
n
31
MET
31
A
GLN
32
n
32
GLN
32
A
VAL
33
n
33
VAL
33
A
VAL
34
n
34
VAL
34
A
GLU
35
n
35
GLU
35
A
THR
36
n
36
THR
36
A
SER
37
n
37
SER
37
A
LEU
38
n
38
LEU
38
A
GLU
39
n
39
GLU
39
A
PRO
40
n
40
PRO
40
A
THR
41
n
41
THR
41
A
LEU
42
n
42
LEU
42
A
ASN
43
n
43
ASN
43
A
LEU
44
n
44
LEU
44
A
GLU
45
n
45
GLU
45
A
TYR
46
n
46
TYR
46
A
ILE
47
n
47
ILE
47
A
THR
48
n
48
THR
48
A
CYS
49
n
49
CYS
49
A
GLU
50
n
50
GLU
50
A
TYR
51
n
51
TYR
51
A
LYS
52
n
52
LYS
52
A
THR
53
n
53
THR
53
A
VAL
54
n
54
VAL
54
A
VAL
55
n
55
VAL
55
A
PRO
56
n
56
PRO
56
A
SER
57
n
57
SER
57
A
PRO
58
n
58
PRO
58
A
TYR
59
n
59
TYR
59
A
VAL
60
n
60
VAL
60
A
LYS
61
n
61
LYS
61
A
CYS
62
n
62
CYS
62
A
CYS
63
n
63
CYS
63
A
GLY
64
n
64
GLY
64
A
ALA
65
n
65
ALA
65
A
SER
66
n
66
SER
66
A
GLU
67
n
67
GLU
67
A
CYS
68
n
68
CYS
68
A
SER
69
n
69
SER
69
A
THR
70
n
70
THR
70
A
LYS
71
n
71
LYS
71
A
GLU
72
n
72
GLU
72
A
LYS
73
n
73
LYS
73
A
PRO
74
n
74
PRO
74
A
ASP
75
n
75
ASP
75
A
TYR
76
n
76
TYR
76
A
GLN
77
n
77
GLN
77
A
CYS
78
n
78
CYS
78
A
LYS
79
n
79
LYS
79
A
VAL
80
n
80
VAL
80
A
TYR
81
n
81
TYR
81
A
THR
82
n
82
THR
82
A
GLY
83
n
83
GLY
83
A
VAL
84
n
84
VAL
84
A
TYR
85
n
85
TYR
85
A
PRO
86
n
86
PRO
86
A
PHE
87
n
87
PHE
87
A
MET
88
n
88
MET
88
A
TRP
89
n
89
TRP
89
A
GLY
90
n
90
GLY
90
A
GLY
91
n
91
GLY
91
A
ALA
92
n
92
ALA
92
A
TYR
93
n
93
TYR
93
A
CYS
94
n
94
CYS
94
A
PHE
95
n
95
PHE
95
A
CYS
96
n
96
CYS
96
A
ASP
97
n
97
ASP
97
A
SER
98
n
98
SER
98
A
GLU
99
n
99
GLU
99
A
ASN
100
n
100
ASN
100
A
THR
101
n
101
THR
101
A
GLN
102
n
102
GLN
102
A
LEU
103
n
103
LEU
103
A
SER
104
n
104
SER
104
A
GLU
105
n
105
GLU
105
A
ALA
106
n
106
ALA
106
A
TYR
107
n
107
TYR
107
A
VAL
108
n
108
VAL
108
A
ASP
109
n
109
ASP
109
A
ARG
110
n
110
ARG
110
A
SER
111
n
111
SER
111
A
ASP
112
n
112
ASP
112
A
VAL
113
n
113
VAL
113
A
CYS
114
n
114
CYS
114
A
ARG
115
n
115
ARG
115
A
HIS
116
n
116
HIS
116
A
ASP
117
n
117
ASP
117
A
HIS
118
n
118
HIS
118
A
ALA
119
n
119
ALA
119
A
SER
120
n
120
SER
120
A
ALA
121
n
121
ALA
121
A
TYR
122
n
122
TYR
122
A
LYS
123
n
123
LYS
123
A
ALA
124
n
124
ALA
124
A
HIS
125
n
125
HIS
125
A
THR
126
n
126
THR
126
A
ALA
127
n
127
ALA
127
A
SER
128
n
128
SER
128
A
LEU
129
n
129
LEU
129
A
LYS
130
n
130
LYS
130
A
ALA
131
n
131
ALA
131
A
LYS
132
n
132
LYS
132
A
VAL
133
n
133
VAL
133
A
ARG
134
n
134
ARG
134
A
VAL
135
n
135
VAL
135
A
MET
136
n
136
MET
136
A
TYR
137
n
137
TYR
137
A
GLY
138
n
138
GLY
138
A
ASN
139
n
139
ASN
139
A
VAL
140
n
140
VAL
140
A
ASN
141
n
141
ASN
141
A
GLN
142
n
142
GLN
142
A
THR
143
n
143
THR
143
A
VAL
144
n
144
VAL
144
A
ASP
145
n
145
ASP
145
A
VAL
146
n
146
VAL
146
A
TYR
147
n
147
TYR
147
A
VAL
148
n
148
VAL
148
A
ASN
149
n
149
ASN
149
A
GLY
150
n
150
GLY
150
A
ASP
151
n
151
ASP
151
A
HIS
152
n
152
HIS
152
A
ALA
153
n
153
ALA
153
A
VAL
154
n
154
VAL
154
A
THR
155
n
155
THR
155
A
ILE
156
n
156
ILE
156
A
GLY
157
n
157
GLY
157
A
GLY
158
n
158
GLY
158
A
THR
159
n
159
THR
159
A
GLN
160
n
160
GLN
160
A
PHE
161
n
161
PHE
161
A
ILE
162
n
162
ILE
162
A
PHE
163
n
163
PHE
163
A
GLY
164
n
164
GLY
164
A
PRO
165
n
165
PRO
165
A
LEU
166
n
166
LEU
166
A
SER
167
n
167
SER
167
A
SER
168
n
168
SER
168
A
ALA
169
n
169
ALA
169
A
TRP
170
n
170
TRP
170
A
THR
171
n
171
THR
171
A
PRO
172
n
172
PRO
172
A
PHE
173
n
173
PHE
173
A
ASP
174
n
174
ASP
174
A
ASN
175
n
175
ASN
175
A
LYS
176
n
176
LYS
176
A
ILE
177
n
177
ILE
177
A
VAL
178
n
178
VAL
178
A
VAL
179
n
179
VAL
179
A
TYR
180
n
180
TYR
180
A
LYS
181
n
181
LYS
181
A
ASP
182
n
182
ASP
182
A
GLU
183
n
183
GLU
183
A
VAL
184
n
184
VAL
184
A
PHE
185
n
185
PHE
185
A
ASN
186
n
186
ASN
186
A
GLN
187
n
187
GLN
187
A
ASP
188
n
188
ASP
188
A
PHE
189
n
189
PHE
189
A
PRO
190
n
190
PRO
190
A
PRO
191
n
191
PRO
191
A
TYR
192
n
192
TYR
192
A
GLY
193
n
193
GLY
193
A
SER
194
n
194
SER
194
A
GLY
195
n
195
GLY
195
A
GLN
196
n
196
GLN
196
A
PRO
197
n
197
PRO
197
A
GLY
198
n
198
GLY
198
A
ARG
199
n
199
ARG
199
A
PHE
200
n
200
PHE
200
A
GLY
201
n
201
GLY
201
A
ASP
202
n
202
ASP
202
A
ILE
203
n
203
ILE
203
A
GLN
204
n
204
GLN
204
A
SER
205
n
205
SER
205
A
ARG
206
n
206
ARG
206
A
THR
207
n
207
THR
207
A
VAL
208
n
208
VAL
208
A
GLU
209
n
209
GLU
209
A
SER
210
n
210
SER
210
A
ASN
211
n
211
ASN
211
A
ASP
212
n
212
ASP
212
A
LEU
213
n
213
LEU
213
A
TYR
214
n
214
TYR
214
A
ALA
215
n
215
ALA
215
A
ASN
216
n
216
ASN
216
A
THR
217
n
217
THR
217
A
ALA
218
n
218
ALA
218
A
LEU
219
n
219
LEU
219
A
LYS
220
n
220
LYS
220
A
LEU
221
n
221
LEU
221
A
ALA
222
n
222
ALA
222
A
ARG
223
n
223
ARG
223
A
PRO
224
n
224
PRO
224
A
SER
225
n
225
SER
225
A
PRO
226
n
226
PRO
226
A
GLY
227
n
227
GLY
227
A
MET
228
n
228
MET
228
A
VAL
229
n
229
VAL
229
A
HIS
230
n
230
HIS
230
A
VAL
231
n
231
VAL
231
A
PRO
232
n
232
PRO
232
A
TYR
233
n
233
TYR
233
A
THR
234
n
234
THR
234
A
GLN
235
n
235
GLN
235
A
THR
236
n
236
THR
236
A
PRO
237
n
237
PRO
237
A
SER
238
n
238
SER
238
A
GLY
239
n
239
GLY
239
A
PHE
240
n
240
PHE
240
A
LYS
241
n
241
LYS
241
A
TYR
242
n
242
TYR
242
A
TRP
243
n
243
TRP
243
A
LEU
244
n
244
LEU
244
A
LYS
245
n
245
LYS
245
A
GLU
246
n
246
GLU
246
A
LYS
247
n
247
LYS
247
A
GLY
248
n
248
GLY
248
A
THR
249
n
249
THR
249
A
ALA
250
n
250
ALA
250
A
LEU
251
n
251
LEU
251
A
ASN
252
n
252
ASN
252
A
THR
253
n
253
THR
253
A
LYS
254
n
254
LYS
254
A
ALA
255
n
255
ALA
255
A
PRO
256
n
256
PRO
256
A
PHE
257
n
257
PHE
257
A
GLY
258
n
258
GLY
258
A
CYS
259
n
259
CYS
259
A
GLN
260
n
260
GLN
260
A
ILE
261
n
261
ILE
261
A
LYS
262
n
262
LYS
262
A
THR
263
n
263
THR
263
A
ASN
264
n
264
ASN
264
A
PRO
265
n
265
PRO
265
A
VAL
266
n
266
VAL
266
A
ARG
267
n
267
ARG
267
A
ALA
268
n
268
ALA
268
A
MET
269
n
269
MET
269
A
ASN
270
n
270
ASN
270
A
CYS
271
n
271
CYS
271
A
ALA
272
n
272
ALA
272
A
VAL
273
n
273
VAL
273
A
GLY
274
n
274
GLY
274
A
ASN
275
n
275
ASN
275
A
ILE
276
n
276
ILE
276
A
PRO
277
n
277
PRO
277
A
VAL
278
n
278
VAL
278
A
SER
279
n
279
SER
279
A
MET
280
n
280
MET
280
A
ASN
281
n
281
ASN
281
A
LEU
282
n
282
LEU
282
A
PRO
283
n
283
PRO
283
A
ASP
284
n
284
ASP
284
A
SER
285
n
285
SER
285
A
ALA
286
n
286
ALA
286
A
PHE
287
n
287
PHE
287
A
THR
288
n
288
THR
288
A
ARG
289
n
289
ARG
289
A
ILE
290
n
290
ILE
290
A
VAL
291
n
291
VAL
291
A
GLU
292
n
292
GLU
292
A
ALA
293
n
293
ALA
293
A
PRO
294
n
294
PRO
294
A
THR
295
n
295
THR
295
A
ILE
296
n
296
ILE
296
A
ILE
297
n
297
ILE
297
A
ASP
298
n
298
ASP
298
A
LEU
299
n
299
LEU
299
A
THR
300
n
300
THR
300
A
CYS
301
n
301
CYS
301
A
THR
302
n
302
THR
302
A
VAL
303
n
303
VAL
303
A
ALA
304
n
304
ALA
304
A
THR
305
n
305
THR
305
A
CYS
306
n
306
CYS
306
A
THR
307
n
307
THR
307
A
HIS
308
n
308
HIS
308
A
SER
309
n
309
SER
309
A
SER
310
n
310
SER
310
A
ASP
311
n
311
ASP
311
A
PHE
312
n
312
PHE
312
A
GLY
313
n
313
GLY
313
A
GLY
314
n
314
GLY
314
A
VAL
315
n
315
VAL
315
A
LEU
316
n
316
LEU
316
A
THR
317
n
317
THR
317
A
LEU
318
n
318
LEU
318
A
THR
319
n
319
THR
319
A
TYR
320
n
320
TYR
320
A
LYS
321
n
321
LYS
321
A
THR
322
n
322
THR
322
A
ASN
323
n
323
ASN
323
A
LYS
324
n
324
LYS
324
A
ASN
325
n
325
ASN
325
A
GLY
326
n
326
GLY
326
A
ASP
327
n
327
ASP
327
A
CYS
328
n
328
CYS
328
A
SER
329
n
329
SER
329
A
VAL
330
n
330
VAL
330
A
HIS
331
n
331
HIS
331
A
SER
332
n
332
SER
332
A
HIS
333
n
333
HIS
333
A
SER
334
n
334
SER
334
A
ASN
335
n
335
ASN
335
A
VAL
336
n
336
VAL
336
A
ALA
337
n
337
ALA
337
A
THR
338
n
338
THR
338
A
LEU
339
n
339
LEU
339
A
GLN
340
n
340
GLN
340
A
GLU
341
n
341
GLU
341
A
ALA
342
n
342
ALA
342
A
THR
343
n
343
THR
343
A
ALA
344
n
344
ALA
344
A
LYS
345
n
345
LYS
345
A
VAL
346
n
346
VAL
346
A
LYS
347
n
347
LYS
347
A
THR
348
n
348
THR
348
A
ALA
349
n
349
ALA
349
A
GLY
350
n
350
GLY
350
A
LYS
351
n
351
LYS
351
A
VAL
352
n
352
VAL
352
A
THR
353
n
353
THR
353
A
LEU
354
n
354
LEU
354
A
HIS
355
n
355
HIS
355
A
PHE
356
n
356
PHE
356
A
SER
357
n
357
SER
357
A
THR
358
n
358
THR
358
A
ALA
359
n
359
ALA
359
A
SER
360
n
360
SER
360
A
ALA
361
n
361
ALA
361
A
SER
362
n
362
SER
362
A
PRO
363
n
363
PRO
363
A
SER
364
n
364
SER
364
A
PHE
365
n
365
PHE
365
A
VAL
366
n
366
VAL
366
A
VAL
367
n
367
VAL
367
A
SER
368
n
368
SER
368
A
LEU
369
n
369
LEU
369
A
CYS
370
n
370
CYS
370
A
SER
371
n
371
SER
371
A
ALA
372
n
372
ALA
372
A
ARG
373
n
373
ARG
373
A
ALA
374
n
374
ALA
374
A
THR
375
n
375
THR
375
A
CYS
376
n
376
CYS
376
A
SER
377
n
377
SER
377
A
ALA
378
n
378
ALA
378
A
SER
379
n
379
SER
379
A
CYS
380
n
380
CYS
380
A
GLU
381
n
381
GLU
381
A
PRO
382
n
382
PRO
382
A
PRO
383
n
383
PRO
383
A
LYS
384
n
384
LYS
384
A
n
385
385
A
n
386
386
A
n
387
387
A
n
388
388
A
n
389
389
A
n
390
390
A
n
391
391
A
1.9396
0.7149
-4.0373
1.3447
-2.6792
15.7642
0.6278
0.1654
-0.4139
0.1736
-0.4600
0.0164
-0.3230
-1.3362
-0.1678
0.7646
-0.1969
-0.1680
0.1518
0.0940
0.1139
refined
-12.7080
51.6530
171.7650
X-RAY DIFFRACTION
3.6040
4.9019
5.0578
8.6947
-0.3157
19.6051
-0.8084
0.1537
0.7379
0.2863
0.3445
1.9061
-1.9592
-2.3632
0.4638
0.9151
0.0182
0.0174
0.9271
0.0499
0.9273
refined
-38.0970
41.0540
217.2140
X-RAY DIFFRACTION
A
1
A
289
X-RAY DIFFRACTION
1
A
290
A
384
X-RAY DIFFRACTION
2
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
HIS
3
A
N
HIS
3
A
O
MET
280
A
O
MET
280
A
O
ILE
276
A
O
ILE
276
A
N
MET
7
A
N
MET
7
A
N
HIS
3
A
N
HIS
3
A
O
MET
280
A
O
MET
280
A
O
SER
279
A
O
SER
279
A
N
ILE
162
A
N
ILE
162
A
O
THR
159
A
O
THR
159
A
N
ILE
156
A
N
ILE
156
A
N
ALA
17
A
N
ALA
17
A
O
LEU
29
A
O
LEU
29
A
N
GLN
30
A
N
GLN
30
A
O
MET
136
A
O
MET
136
A
N
SER
120
A
N
SER
120
A
O
VAL
179
A
O
VAL
179
A
N
VAL
178
A
N
VAL
178
A
O
PHE
185
A
O
PHE
185
A
O
VAL
144
A
O
VAL
144
A
N
VAL
133
A
N
VAL
133
A
O
MET
136
A
O
MET
136
A
N
GLN
30
A
N
GLN
30
A
N
LEU
38
A
N
LEU
38
A
O
ALA
268
A
O
ALA
268
A
O
MET
269
A
O
MET
269
A
N
GLN
260
A
N
GLN
260
A
N
VAL
54
A
N
VAL
54
A
O
TYR
107
A
O
TYR
107
A
O
LEU
103
A
O
LEU
103
A
N
TYR
59
A
N
TYR
59
A
N
VAL
54
A
N
VAL
54
A
O
TYR
107
A
O
TYR
107
A
O
SER
104
A
O
SER
104
A
N
LYS
79
A
N
LYS
79
A
N
GLN
204
A
N
GLN
204
A
O
TYR
214
A
O
TYR
214
A
N
LYS
220
A
N
LYS
220
A
O
THR
234
A
O
THR
234
A
N
THR
302
A
N
THR
302
A
O
THR
317
A
O
THR
317
A
N
LEU
316
A
N
LEU
316
A
O
LEU
354
A
O
LEU
354
A
O
SER
357
A
O
SER
357
A
N
THR
338
A
N
THR
338
A
N
CYS
328
A
N
CYS
328
A
O
ALA
344
A
O
ALA
344
A
N
HIS
331
A
N
HIS
331
A
O
SER
368
A
O
SER
368
A
N
LEU
369
A
N
LEU
369
A
O
ALA
372
A
O
ALA
372
1
A
HOH
412
B
HOH
1
A
HOH
430
B
HOH
1
A
ASP
385
A
ASP
385
1
Y
1
A
HIS
386
A
HIS
386
1
Y
1
A
ILE
387
A
ILE
387
1
Y
1
A
VAL
388
A
VAL
388
1
Y
1
A
PRO
389
A
PRO
389
1
Y
1
A
TYR
390
A
TYR
390
1
Y
1
A
ALA
391
A
ALA
391
1
Y
1
A
A
ARG
ILE
289
290
-148.89
1
A
SER
4
-160.21
117.12
1
A
HIS
18
-166.22
45.48
1
A
SER
25
-47.95
157.30
1
A
LEU
27
-10.49
90.68
1
A
TYR
46
-171.25
-178.23
1
A
GLU
72
-97.33
33.34
1
A
PRO
86
-30.73
-87.93
1
A
PHE
87
-104.56
-158.34
1
A
ASP
97
-86.98
-78.34
1
A
GLU
99
-64.24
9.63
1
A
THR
126
-22.40
116.49
1
A
ASN
139
-118.78
63.94
1
A
TYR
180
-110.50
-94.59
1
A
LYS
181
-88.95
-103.87
1
A
SER
210
-38.59
130.45
1
A
LEU
244
-68.90
3.34
1
A
ASN
252
-51.34
-7.91
1
A
HIS
308
-53.20
-79.34
1
A
HIS
331
-172.87
139.91
1
A
LYS
351
-161.92
107.83
1
A
ALA
359
-154.02
51.00
1
A
CYS
370
57.93
-116.34
4.062
-3.51
-1.76
0.00
-3.51
0.00
5.27
0.873
0.809
8 OF THE SOLVENT MOLECULES ADDED TO POSITIVE FOURIER DIFFERENCE PEAKS (ABOVE 3 SIGMA) ARE FURTHER THAN 3.5 ANGSTROMS AWAY FROM MACROMOLECULE.
THE E1 PROTEIN IS GLYCOSYLATED at ASN 141. THE DENSITY WAS NOT CLEAR ENOUGH TO BUILD A SUGAR AT THIS LOCATION THUS WATER MOLECULES 71 AND 81 WERE PLACED INTO POSITIVE DENSITY NEAR THIS RESIDUE.
0.31868
0.26654
0.27199
3.00
39.0
1232
13467
10604
10.4
87.90
52.882
0.494
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
MIR
0.553
0.80
0.80
1.20
MAXIMUM LIKELIHOOD
MASK
3.00
39.0
88
3023
0
0
2935
0.006
0.022
3020
0.001
0.020
2610
0.996
1.947
4125
0.707
3.000
6121
6.875
5.000
383
36.652
24.298
121
15.366
15.000
466
10.636
15.000
10
0.060
0.200
464
0.002
0.020
3366
0.001
0.020
589
0.175
0.200
697
0.158
0.200
2872
0.173
0.200
1471
0.078
0.200
1858
0.153
0.200
113
0.058
0.200
3
0.124
0.200
14
0.101
0.200
43
0.201
0.200
7
0.184
1.500
2457
0.017
1.500
768
0.210
2.000
3129
0.246
3.000
1310
0.378
4.500
996
0.536
0.38
3.077
72
657
20
76.10
3
39
2ALA
10666
10666
0
0
0.075
1
8.0
7.8
87.6
0.124
3.0
3.21
5.4
1
5.5
76.1
refinement
REFMAC
5.2.0005
data reduction
MOSFLM
data scaling
SCALEPACK
phasing
MLPHARE
Structural polyprotein (P130)
Crystal structure of the Semliki Forest Virus envelope protein E1 in its monomeric conformation.
1
N
N
2
N
N
A
SER
238
A
SER
238
HELX_P
A
LYS
247
A
LYS
247
1
1
10
A
ALA
250
A
ALA
250
HELX_P
A
LYS
254
A
LYS
254
5
2
5
A
ALA
255
A
ALA
255
HELX_P
A
CYS
259
A
CYS
259
5
3
5
A
PRO
283
A
PRO
283
HELX_P
A
PHE
287
A
PHE
287
5
4
5
disulf
2.030
A
CYS
49
A
SG
CYS
49
1_555
A
CYS
114
A
SG
CYS
114
1_555
disulf
2.036
A
CYS
62
A
SG
CYS
62
1_555
A
CYS
94
A
SG
CYS
94
1_555
disulf
2.041
A
CYS
63
A
SG
CYS
63
1_555
A
CYS
96
A
SG
CYS
96
1_555
disulf
2.028
A
CYS
68
A
SG
CYS
68
1_555
A
CYS
78
A
SG
CYS
78
1_555
disulf
2.038
A
CYS
259
A
SG
CYS
259
1_555
A
CYS
271
A
SG
CYS
271
1_555
disulf
2.036
A
CYS
301
A
SG
CYS
301
1_555
A
CYS
376
A
SG
CYS
376
1_555
disulf
2.033
A
CYS
306
A
SG
CYS
306
1_555
A
CYS
380
A
SG
CYS
380
1_555
disulf
2.037
A
CYS
328
A
SG
CYS
328
1_555
A
CYS
370
A
SG
CYS
370
1_555
VIRAL PROTEIN
Envelope glycoprotein, Membrane Fusion, Viral protein
POLS_SFV
UNP
1
816
P03315
YEHSTVMPNVVGFPYKAHIERPGYSPLTLQMQVVETSLEPTLNLEYITCEYKTVVPSPYVKCCGASECSTKEKPDYQCKV
YTGVYPFMWGGAYCFCDSENTQLSEAYVDRSDVCRHDHASAYKAHTASLKAKVRVMYGNVNQTVDVYVNGDHAVTIGGTQ
FIFGPLSSAWTPFDNKIVVYKDEVFNQDFPPYGSGQPGRFGDIQSRTVESNDLYANTALKLARPSPGMVHVPYTQTPSGF
KYWLKEKGTALNTKAPFGCQIKTNPVRAMNCAVGNIPVSMNLPDSAFTRIVEAPTIIDLTCTVATCTHSSDFGGVLTLTY
KTNKNGDCSVHSHSNVATLQEATAKVKTAGKVTLHFSTASASPSFVVSLCSARATCSASCEPPKDHIVPYA
816
1206
2ALA
1
391
P03315
A
1
1
391
3
4
5
5
3
3
2
2
4
2
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
GLU
2
A
GLU
2
A
HIS
3
A
HIS
3
A
ASN
275
A
ASN
275
A
ASN
281
A
ASN
281
A
VAL
6
A
VAL
6
A
PRO
8
A
PRO
8
A
GLU
2
A
GLU
2
A
HIS
3
A
HIS
3
A
ASN
275
A
ASN
275
A
ASN
281
A
ASN
281
A
THR
159
A
THR
159
A
PHE
163
A
PHE
163
A
VAL
154
A
VAL
154
A
ILE
156
A
ILE
156
A
TYR
15
A
TYR
15
A
ALA
17
A
ALA
17
A
LEU
29
A
LEU
29
A
THR
48
A
THR
48
A
ALA
119
A
ALA
119
A
MET
136
A
MET
136
A
LYS
176
A
LYS
176
A
VAL
179
A
VAL
179
A
VAL
184
A
VAL
184
A
ASN
186
A
ASN
186
A
THR
143
A
THR
143
A
TYR
147
A
TYR
147
A
ALA
119
A
ALA
119
A
MET
136
A
MET
136
A
LEU
29
A
LEU
29
A
THR
48
A
THR
48
A
ARG
267
A
ARG
267
A
MET
269
A
MET
269
A
GLN
260
A
GLN
260
A
LYS
262
A
LYS
262
A
TYR
51
A
TYR
51
A
VAL
54
A
VAL
54
A
THR
101
A
THR
101
A
ARG
110
A
ARG
110
A
TYR
59
A
TYR
59
A
LYS
61
A
LYS
61
A
TYR
51
A
TYR
51
A
VAL
54
A
VAL
54
A
THR
101
A
THR
101
A
ARG
110
A
ARG
110
A
GLN
77
A
GLN
77
A
THR
82
A
THR
82
A
ILE
203
A
ILE
203
A
GLN
204
A
GLN
204
A
TYR
214
A
TYR
214
A
ALA
215
A
ALA
215
A
LYS
220
A
LYS
220
A
LEU
221
A
LEU
221
A
TYR
233
A
TYR
233
A
THR
234
A
THR
234
A
ILE
296
A
ILE
296
A
THR
305
A
THR
305
A
GLY
314
A
GLY
314
A
THR
322
A
THR
322
A
VAL
352
A
VAL
352
A
THR
358
A
THR
358
A
ALA
337
A
ALA
337
A
LEU
339
A
LEU
339
A
GLY
326
A
GLY
326
A
CYS
328
A
CYS
328
A
ALA
344
A
ALA
344
A
VAL
346
A
VAL
346
A
HIS
331
A
HIS
331
A
SER
332
A
SER
332
A
SER
364
A
SER
364
A
LEU
369
A
LEU
369
A
ALA
372
A
ALA
372
A
SER
377
A
SER
377
181
P 64 2 2