0.014037
0.000000
0.002731
0.000000
0.013814
0.000000
0.000000
0.000000
0.013944
0.00000
0.00000
0.00000
Lange, U.E.W.
Baucke, D.
Hornberger, W.
Mack, H.
Seitz, W.
Hoeffken, H.W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
101.01
90.00
71.240
72.390
73.060
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C9 H17 N O2
171.237
n
2-AMINO-3-CYCLOHEXYL-PROPIONIC ACID
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C5 H9 N O3
131.130
n
4-HYDROXYPROLINE
HYDROXYPROLINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C24 H36 N6 O4
472.580
N-[(1R)-2-[(1-{[({6-[AMINO(IMINO)METHYL]PYRIDIN-3-YL}METHYL)AMINO]CARBONYL}CYCLOPENTYL)AMINO]-1-(CYCLOHEXYLMETHYL)-2-OXOETHYL]GLYCINE
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H6 O4
118.088
SUCCINIC ACID
non-polymer
C10 H13 N O5 S
259.279
n
4-SULFOMETHYL-L-PHENYLALANINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
C
N
22
N
C
N
23
N
C
N
24
N
C
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
N
N
44
S
C
N
45
N
C
N
46
N
O
N
47
N
C
N
48
N
C
N
49
N
C
N
50
N
N
N
51
N
C
N
52
N
N
N
53
N
N
N
54
N
O
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
N
N
71
S
C
N
72
N
C
N
73
N
O
N
74
N
C
N
75
N
C
N
76
N
O
N
77
N
N
N
78
N
O
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
N
N
88
S
C
N
89
N
C
N
90
N
O
N
91
N
C
N
92
N
C
N
93
N
O
N
94
N
O
N
95
N
O
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
N
N
104
R
C
N
105
N
C
N
106
N
O
N
107
N
C
N
108
N
S
N
109
N
O
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
N
N
118
S
C
N
119
N
C
N
120
N
O
N
121
N
C
N
122
N
C
N
123
N
C
N
124
N
O
N
125
N
N
N
126
N
O
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
N
142
N
C
N
143
N
C
N
144
N
O
N
145
N
O
N
146
N
O
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
N
N
157
N
C
N
158
N
C
N
159
N
O
N
160
N
O
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
N
N
167
S
C
N
168
N
C
N
169
N
O
N
170
N
C
Y
171
N
C
Y
172
N
N
Y
173
N
C
Y
174
N
C
Y
175
N
N
N
176
N
O
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
O
N
188
N
H
N
189
N
H
N
190
N
N
N
191
S
C
N
192
N
C
N
193
N
O
N
194
N
C
N
195
R
C
N
196
N
C
N
197
N
O
N
198
N
O
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
N
N
209
S
C
N
210
N
C
N
211
N
O
N
212
S
C
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
O
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
N
N
253
S
C
N
254
N
C
N
255
N
O
N
256
N
C
N
257
N
C
N
258
N
C
N
259
N
C
N
260
N
N
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
N
N
278
S
C
N
279
N
C
N
280
N
O
N
281
N
C
N
282
N
C
N
283
N
S
N
284
N
C
N
285
N
O
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
C
N
298
N
C
N
299
N
N
N
300
R
C
N
301
N
C
N
302
N
C
N
303
N
C
N
304
N
C
N
305
N
C
N
306
N
C
N
307
N
C
N
308
N
C
N
309
N
O
N
310
N
N
N
311
N
C
N
312
N
C
N
313
N
O
N
314
N
N
N
315
N
C
Y
316
N
C
Y
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
N
Y
321
N
C
N
322
N
O
N
323
N
O
N
324
N
C
N
325
N
N
N
326
N
N
N
327
N
C
N
328
N
C
N
329
N
C
N
330
N
C
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
N
N
368
S
C
N
369
N
C
N
370
N
O
N
371
N
C
Y
372
N
C
Y
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
N
378
N
O
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
N
N
391
S
C
N
392
N
C
N
393
N
O
N
394
N
C
N
395
N
C
N
396
N
C
N
397
N
O
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
N
N
408
S
C
N
409
N
C
N
410
N
O
N
411
N
C
N
412
N
O
N
413
N
O
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
C
N
422
N
O
N
423
N
O
N
424
N
C
N
425
N
C
N
426
N
C
N
427
N
O
N
428
N
O
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
N
N
436
S
C
N
437
N
C
Y
438
N
C
Y
439
N
C
Y
440
N
C
Y
441
N
C
Y
442
N
C
Y
443
N
C
N
444
N
C
N
445
N
S
N
446
N
O
N
447
N
O
N
448
N
O
N
449
N
C
N
450
N
O
N
451
N
O
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
N
N
466
S
C
N
467
N
C
N
468
N
O
N
469
R
C
N
470
N
O
N
471
N
C
N
472
N
O
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
N
N
483
S
C
N
484
N
C
N
485
N
O
N
486
N
C
Y
487
N
C
Y
488
N
C
Y
489
N
C
Y
490
N
N
Y
491
N
C
Y
492
N
C
Y
493
N
C
Y
494
N
C
Y
495
N
C
N
496
N
O
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
N
N
510
S
C
N
511
N
C
N
512
N
O
N
513
N
C
Y
514
N
C
Y
515
N
C
Y
516
N
C
Y
517
N
C
Y
518
N
C
Y
519
N
C
N
520
N
O
N
521
N
O
N
522
N
H
N
523
N
H
N
524
N
H
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
H
N
529
N
H
N
530
N
H
N
531
N
H
N
532
N
H
N
533
N
N
N
534
S
C
N
535
N
C
N
536
N
O
N
537
N
C
N
538
N
C
N
539
N
C
N
540
N
O
N
541
N
H
N
542
N
H
N
543
N
H
N
544
N
H
N
545
N
H
N
546
N
H
N
547
N
H
N
548
N
H
N
549
N
H
N
550
N
H
N
551
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
doub
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
doub
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
doub
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
doub
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
doub
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
doub
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
doub
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
Y
169
N
sing
Y
170
N
doub
Y
171
N
doub
N
172
N
sing
Y
173
N
sing
N
174
N
sing
Y
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
doub
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
doub
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
doub
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
doub
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
doub
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
doub
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
Y
329
N
doub
Y
330
N
sing
Y
331
N
sing
N
332
N
sing
Y
333
N
doub
N
334
N
sing
Y
335
N
sing
N
336
N
sing
Y
337
N
doub
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
E
doub
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
Y
367
N
doub
Y
368
N
sing
Y
369
N
sing
N
370
N
sing
Y
371
N
doub
N
372
N
sing
Y
373
N
doub
N
374
N
sing
Y
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
doub
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
doub
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
doub
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
doub
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
Y
431
N
doub
Y
432
N
sing
Y
433
N
sing
N
434
N
sing
Y
435
N
doub
N
436
N
sing
Y
437
N
doub
N
438
N
sing
Y
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
doub
N
446
N
doub
N
447
N
sing
N
448
N
sing
N
449
N
doub
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
doub
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
doub
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
Y
479
N
doub
Y
480
N
sing
Y
481
N
sing
N
482
N
sing
Y
483
N
doub
Y
484
N
sing
Y
485
N
sing
N
486
N
sing
Y
487
N
sing
Y
488
N
doub
N
489
N
sing
Y
490
N
doub
N
491
N
sing
Y
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
doub
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
Y
507
N
doub
Y
508
N
sing
Y
509
N
sing
N
510
N
sing
Y
511
N
doub
N
512
N
sing
Y
513
N
doub
N
514
N
sing
Y
515
N
sing
N
516
N
sing
N
517
N
sing
N
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
sing
N
526
N
doub
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
sing
N
535
N
sing
N
536
N
sing
N
537
N
sing
UK
BIOORG.MED.CHEM.LETT.
BMCLE8
1127
0960-894X
16
2648
2653
10.1016/j.bmcl.2006.01.046
16460939
Orally active thrombin inhibitors. Part 2: optimization of the P2-moiety
2006
10.2210/pdb2ank/pdb
pdb_00002ank
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
goebel mirror
CCD
SIEMENS
goebel mirror
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RU200
29780.219
Thrombin heavy chain
3.4.21.5
1
nat
polymer
3848.256
Thrombin light chain
1
nat
polymer
1514.605
synthetic peptide
1
syn
polymer
472.580
N-[(1R)-2-[(1-{[({6-[AMINO(IMINO)METHYL]PYRIDIN-3-YL}METHYL)AMINO]CARBONYL}CYCLOPENTYL)AMINO]-1-(CYCLOHEXYLMETHYL)-2-OXOETHYL]GLYCINE
1
syn
non-polymer
18.015
water
174
nat
water
Coagulation factor II
no
no
IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM
LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL
QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY
THVFRLKKWIQKVIDQFGE
IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM
LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL
QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY
THVFRLKKWIQKVIDQFGE
H
polypeptide(L)
no
no
GSGEADCGLRPLFEKKSLEDKTERELLESYIDGR
GSGEADCGLRPLFEKKSLEDKTERELLESYIDGR
L
polypeptide(L)
no
yes
(SIN)YEPI(HYP)EE(SMF)(ALC)Q
XYEPIPEEFAQ
P
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
sample
9606
Homo sapiens
human
Homo
sample
9606
Homo sapiens
2.63
53.18
VAPOR DIFFUSION, SITTING DROP
8.5
PEG 400, Na-acetate, Tris, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
298
software
diffrn_source
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_site
repository
Initial release
Version format compliance
Atomic model
Database references
Derived calculations
Non-polymer description
Structure summary
Version format compliance
Other
Refinement description
Data collection
Data collection
Database references
Derived calculations
Refinement description
1
0
2006-11-14
1
1
2008-04-30
1
2
2011-07-13
1
3
2012-12-12
1
4
2017-10-11
1
5
2018-04-04
1
6
2023-08-23
_software.name
_diffrn_source.type
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Same inhibitor type
RCSB
Y
RCSB
2005-08-11
REL
N12
N-[(1R)-2-[(1-{[({6-[AMINO(IMINO)METHYL]PYRIDIN-3-YL}METHYL)AMINO]CARBONYL}CYCLOPENTYL)AMINO]-1-(CYCLOHEXYLMETHYL)-2-OXOETHYL]GLYCINE
HOH
water
synthetic peptide
Synthetic
sample
1NZQ
PDB
experimental model
Anticoagulant, Antithrombotic
DECAPEPTIDE
HIRUDIN ANALOGUE
Oligopeptide
N12
501
4
N12
N12
501
H
HOH
2
5
HOH
HOH
502
H
HOH
5
5
HOH
HOH
503
H
HOH
7
5
HOH
HOH
504
H
HOH
8
5
HOH
HOH
505
H
HOH
9
5
HOH
HOH
506
H
HOH
10
5
HOH
HOH
507
H
HOH
11
5
HOH
HOH
508
H
HOH
12
5
HOH
HOH
509
H
HOH
13
5
HOH
HOH
510
H
HOH
14
5
HOH
HOH
511
H
HOH
15
5
HOH
HOH
512
H
HOH
16
5
HOH
HOH
513
H
HOH
17
5
HOH
HOH
514
H
HOH
24
5
HOH
HOH
515
H
HOH
25
5
HOH
HOH
516
H
HOH
26
5
HOH
HOH
517
H
HOH
27
5
HOH
HOH
518
H
HOH
28
5
HOH
HOH
519
H
HOH
29
5
HOH
HOH
520
H
HOH
30
5
HOH
HOH
521
H
HOH
31
5
HOH
HOH
522
H
HOH
32
5
HOH
HOH
523
H
HOH
33
5
HOH
HOH
524
H
HOH
34
5
HOH
HOH
525
H
HOH
35
5
HOH
HOH
526
H
HOH
36
5
HOH
HOH
527
H
HOH
37
5
HOH
HOH
528
H
HOH
38
5
HOH
HOH
529
H
HOH
40
5
HOH
HOH
530
H
HOH
41
5
HOH
HOH
531
H
HOH
42
5
HOH
HOH
532
H
HOH
43
5
HOH
HOH
533
H
HOH
44
5
HOH
HOH
534
H
HOH
45
5
HOH
HOH
535
H
HOH
47
5
HOH
HOH
536
H
HOH
48
5
HOH
HOH
537
H
HOH
49
5
HOH
HOH
538
H
HOH
50
5
HOH
HOH
539
H
HOH
51
5
HOH
HOH
540
H
HOH
52
5
HOH
HOH
541
H
HOH
53
5
HOH
HOH
542
H
HOH
54
5
HOH
HOH
543
H
HOH
55
5
HOH
HOH
544
H
HOH
56
5
HOH
HOH
545
H
HOH
57
5
HOH
HOH
546
H
HOH
58
5
HOH
HOH
547
H
HOH
59
5
HOH
HOH
548
H
HOH
60
5
HOH
HOH
549
H
HOH
61
5
HOH
HOH
550
H
HOH
62
5
HOH
HOH
551
H
HOH
63
5
HOH
HOH
552
H
HOH
64
5
HOH
HOH
553
H
HOH
65
5
HOH
HOH
554
H
HOH
66
5
HOH
HOH
555
H
HOH
67
5
HOH
HOH
556
H
HOH
68
5
HOH
HOH
557
H
HOH
69
5
HOH
HOH
558
H
HOH
70
5
HOH
HOH
559
H
HOH
71
5
HOH
HOH
560
H
HOH
72
5
HOH
HOH
561
H
HOH
73
5
HOH
HOH
562
H
HOH
74
5
HOH
HOH
563
H
HOH
75
5
HOH
HOH
564
H
HOH
76
5
HOH
HOH
565
H
HOH
77
5
HOH
HOH
566
H
HOH
78
5
HOH
HOH
567
H
HOH
79
5
HOH
HOH
568
H
HOH
80
5
HOH
HOH
569
H
HOH
81
5
HOH
HOH
570
H
HOH
82
5
HOH
HOH
571
H
HOH
83
5
HOH
HOH
572
H
HOH
84
5
HOH
HOH
573
H
HOH
85
5
HOH
HOH
574
H
HOH
86
5
HOH
HOH
575
H
HOH
87
5
HOH
HOH
576
H
HOH
88
5
HOH
HOH
577
H
HOH
89
5
HOH
HOH
578
H
HOH
90
5
HOH
HOH
579
H
HOH
91
5
HOH
HOH
580
H
HOH
92
5
HOH
HOH
581
H
HOH
93
5
HOH
HOH
582
H
HOH
94
5
HOH
HOH
583
H
HOH
95
5
HOH
HOH
584
H
HOH
96
5
HOH
HOH
585
H
HOH
97
5
HOH
HOH
586
H
HOH
99
5
HOH
HOH
587
H
HOH
102
5
HOH
HOH
588
H
HOH
103
5
HOH
HOH
589
H
HOH
104
5
HOH
HOH
590
H
HOH
105
5
HOH
HOH
591
H
HOH
106
5
HOH
HOH
592
H
HOH
107
5
HOH
HOH
593
H
HOH
108
5
HOH
HOH
594
H
HOH
109
5
HOH
HOH
595
H
HOH
110
5
HOH
HOH
596
H
HOH
111
5
HOH
HOH
597
H
HOH
112
5
HOH
HOH
598
H
HOH
113
5
HOH
HOH
599
H
HOH
114
5
HOH
HOH
600
H
HOH
115
5
HOH
HOH
601
H
HOH
116
5
HOH
HOH
602
H
HOH
117
5
HOH
HOH
603
H
HOH
118
5
HOH
HOH
604
H
HOH
119
5
HOH
HOH
605
H
HOH
120
5
HOH
HOH
606
H
HOH
121
5
HOH
HOH
607
H
HOH
122
5
HOH
HOH
608
H
HOH
123
5
HOH
HOH
609
H
HOH
124
5
HOH
HOH
610
H
HOH
125
5
HOH
HOH
611
H
HOH
126
5
HOH
HOH
612
H
HOH
127
5
HOH
HOH
613
H
HOH
128
5
HOH
HOH
614
H
HOH
129
5
HOH
HOH
615
H
HOH
130
5
HOH
HOH
616
H
HOH
131
5
HOH
HOH
617
H
HOH
132
5
HOH
HOH
618
H
HOH
133
5
HOH
HOH
619
H
HOH
134
5
HOH
HOH
620
H
HOH
135
5
HOH
HOH
621
H
HOH
136
5
HOH
HOH
622
H
HOH
140
5
HOH
HOH
623
H
HOH
141
5
HOH
HOH
624
H
HOH
142
5
HOH
HOH
625
H
HOH
143
5
HOH
HOH
626
H
HOH
144
5
HOH
HOH
627
H
HOH
145
5
HOH
HOH
628
H
HOH
146
5
HOH
HOH
629
H
HOH
147
5
HOH
HOH
630
H
HOH
148
5
HOH
HOH
631
H
HOH
150
5
HOH
HOH
632
H
HOH
151
5
HOH
HOH
633
H
HOH
152
5
HOH
HOH
634
H
HOH
153
5
HOH
HOH
635
H
HOH
154
5
HOH
HOH
636
H
HOH
155
5
HOH
HOH
637
H
HOH
156
5
HOH
HOH
638
H
HOH
158
5
HOH
HOH
639
H
HOH
159
5
HOH
HOH
640
H
HOH
160
5
HOH
HOH
641
H
HOH
161
5
HOH
HOH
642
H
HOH
163
5
HOH
HOH
643
H
HOH
165
5
HOH
HOH
644
H
HOH
168
5
HOH
HOH
645
H
HOH
169
5
HOH
HOH
646
H
HOH
170
5
HOH
HOH
647
H
HOH
171
5
HOH
HOH
648
H
HOH
172
5
HOH
HOH
649
H
HOH
173
5
HOH
HOH
650
H
HOH
174
5
HOH
HOH
651
H
HOH
175
5
HOH
HOH
652
H
HOH
1
5
HOH
HOH
16
L
HOH
3
5
HOH
HOH
17
L
HOH
4
5
HOH
HOH
18
L
HOH
6
5
HOH
HOH
19
L
HOH
18
5
HOH
HOH
20
L
HOH
19
5
HOH
HOH
21
L
HOH
20
5
HOH
HOH
22
L
HOH
21
5
HOH
HOH
23
L
HOH
22
5
HOH
HOH
24
L
HOH
23
5
HOH
HOH
25
L
HOH
46
5
HOH
HOH
26
L
HOH
98
5
HOH
HOH
27
L
HOH
101
5
HOH
HOH
28
L
HOH
138
5
HOH
HOH
29
L
HOH
149
5
HOH
HOH
30
L
HOH
157
5
HOH
HOH
31
L
HOH
162
5
HOH
HOH
32
L
HOH
164
5
HOH
HOH
33
L
HOH
166
5
HOH
HOH
34
L
HOH
167
5
HOH
HOH
35
L
HOH
39
5
HOH
HOH
39
P
HOH
137
5
HOH
HOH
137
P
HOH
139
5
HOH
HOH
139
P
ILE
16
n
1
ILE
16
H
VAL
17
n
2
VAL
17
H
GLU
18
n
3
GLU
18
H
GLY
19
n
4
GLY
19
H
SER
20
n
5
SER
20
H
ASP
21
n
6
ASP
21
H
ALA
22
n
7
ALA
22
H
GLU
23
n
8
GLU
23
H
ILE
24
n
9
ILE
24
H
GLY
25
n
10
GLY
25
H
MET
26
n
11
MET
26
H
SER
27
n
12
SER
27
H
PRO
28
n
13
PRO
28
H
TRP
29
n
14
TRP
29
H
GLN
30
n
15
GLN
30
H
VAL
31
n
16
VAL
31
H
MET
32
n
17
MET
32
H
LEU
33
n
18
LEU
33
H
PHE
34
n
19
PHE
34
H
ARG
35
n
20
ARG
35
H
LYS
36
n
21
LYS
36
H
SER
36
n
22
A
SER
36
H
PRO
37
n
23
PRO
37
H
GLN
38
n
24
GLN
38
H
GLU
39
n
25
GLU
39
H
LEU
40
n
26
LEU
40
H
LEU
41
n
27
LEU
41
H
CYS
42
n
28
CYS
42
H
GLY
43
n
29
GLY
43
H
ALA
44
n
30
ALA
44
H
SER
45
n
31
SER
45
H
LEU
46
n
32
LEU
46
H
ILE
47
n
33
ILE
47
H
SER
48
n
34
SER
48
H
ASP
49
n
35
ASP
49
H
ARG
50
n
36
ARG
50
H
TRP
51
n
37
TRP
51
H
VAL
52
n
38
VAL
52
H
LEU
53
n
39
LEU
53
H
THR
54
n
40
THR
54
H
ALA
55
n
41
ALA
55
H
ALA
56
n
42
ALA
56
H
HIS
57
n
43
HIS
57
H
CYS
58
n
44
CYS
58
H
LEU
59
n
45
LEU
59
H
LEU
60
n
46
LEU
60
H
TYR
60
n
47
A
TYR
60
H
PRO
60
n
48
B
PRO
60
H
PRO
60
n
49
C
PRO
60
H
TRP
60
n
50
D
TRP
60
H
ASP
60
n
51
E
ASP
60
H
LYS
60
n
52
F
LYS
60
H
ASN
60
n
53
G
ASN
60
H
PHE
60
n
54
H
PHE
60
H
THR
60
n
55
I
THR
60
H
GLU
61
n
56
GLU
61
H
ASN
62
n
57
ASN
62
H
ASP
63
n
58
ASP
63
H
LEU
64
n
59
LEU
64
H
LEU
65
n
60
LEU
65
H
VAL
66
n
61
VAL
66
H
ARG
67
n
62
ARG
67
H
ILE
68
n
63
ILE
68
H
GLY
69
n
64
GLY
69
H
LYS
70
n
65
LYS
70
H
HIS
71
n
66
HIS
71
H
SER
72
n
67
SER
72
H
ARG
73
n
68
ARG
73
H
THR
74
n
69
THR
74
H
ARG
75
n
70
ARG
75
H
TYR
76
n
71
TYR
76
H
GLU
77
n
72
GLU
77
H
ARG
77
n
73
A
ARG
77
H
ASN
78
n
74
ASN
78
H
ILE
79
n
75
ILE
79
H
GLU
80
n
76
GLU
80
H
LYS
81
n
77
LYS
81
H
ILE
82
n
78
ILE
82
H
SER
83
n
79
SER
83
H
MET
84
n
80
MET
84
H
LEU
85
n
81
LEU
85
H
GLU
86
n
82
GLU
86
H
LYS
87
n
83
LYS
87
H
ILE
88
n
84
ILE
88
H
TYR
89
n
85
TYR
89
H
ILE
90
n
86
ILE
90
H
HIS
91
n
87
HIS
91
H
PRO
92
n
88
PRO
92
H
ARG
93
n
89
ARG
93
H
TYR
94
n
90
TYR
94
H
ASN
95
n
91
ASN
95
H
TRP
96
n
92
TRP
96
H
ARG
97
n
93
ARG
97
H
GLU
97
n
94
A
GLU
97
H
ASN
98
n
95
ASN
98
H
LEU
99
n
96
LEU
99
H
ASP
100
n
97
ASP
100
H
ARG
101
n
98
ARG
101
H
ASP
102
n
99
ASP
102
H
ILE
103
n
100
ILE
103
H
ALA
104
n
101
ALA
104
H
LEU
105
n
102
LEU
105
H
MET
106
n
103
MET
106
H
LYS
107
n
104
LYS
107
H
LEU
108
n
105
LEU
108
H
LYS
109
n
106
LYS
109
H
LYS
110
n
107
LYS
110
H
PRO
111
n
108
PRO
111
H
VAL
112
n
109
VAL
112
H
ALA
113
n
110
ALA
113
H
PHE
114
n
111
PHE
114
H
SER
115
n
112
SER
115
H
ASP
116
n
113
ASP
116
H
TYR
117
n
114
TYR
117
H
ILE
118
n
115
ILE
118
H
HIS
119
n
116
HIS
119
H
PRO
120
n
117
PRO
120
H
VAL
121
n
118
VAL
121
H
CYS
122
n
119
CYS
122
H
LEU
123
n
120
LEU
123
H
PRO
124
n
121
PRO
124
H
ASP
125
n
122
ASP
125
H
ARG
126
n
123
ARG
126
H
GLU
127
n
124
GLU
127
H
THR
128
n
125
THR
128
H
ALA
129
n
126
ALA
129
H
ALA
129
n
127
A
ALA
129
H
SER
129
n
128
B
SER
129
H
LEU
129
n
129
C
LEU
129
H
LEU
130
n
130
LEU
130
H
GLN
131
n
131
GLN
131
H
ALA
132
n
132
ALA
132
H
GLY
133
n
133
GLY
133
H
TYR
134
n
134
TYR
134
H
LYS
135
n
135
LYS
135
H
GLY
136
n
136
GLY
136
H
ARG
137
n
137
ARG
137
H
VAL
138
n
138
VAL
138
H
THR
139
n
139
THR
139
H
GLY
140
n
140
GLY
140
H
TRP
141
n
141
TRP
141
H
GLY
142
n
142
GLY
142
H
ASN
143
n
143
ASN
143
H
LEU
144
n
144
LEU
144
H
LYS
145
n
145
LYS
145
H
GLU
146
n
146
GLU
146
H
THR
147
n
147
THR
147
H
n
148
A
147
H
n
149
B
147
H
n
150
C
147
H
n
151
D
147
H
n
152
E
147
H
n
153
F
147
H
n
154
G
147
H
GLY
150
n
155
GLY
150
H
GLN
151
n
156
GLN
151
H
PRO
152
n
157
PRO
152
H
SER
153
n
158
SER
153
H
VAL
154
n
159
VAL
154
H
LEU
155
n
160
LEU
155
H
GLN
156
n
161
GLN
156
H
VAL
157
n
162
VAL
157
H
VAL
158
n
163
VAL
158
H
ASN
159
n
164
ASN
159
H
LEU
160
n
165
LEU
160
H
PRO
161
n
166
PRO
161
H
ILE
162
n
167
ILE
162
H
VAL
163
n
168
VAL
163
H
GLU
164
n
169
GLU
164
H
ARG
165
n
170
ARG
165
H
PRO
166
n
171
PRO
166
H
VAL
167
n
172
VAL
167
H
CYS
168
n
173
CYS
168
H
LYS
169
n
174
LYS
169
H
ASP
170
n
175
ASP
170
H
SER
171
n
176
SER
171
H
THR
172
n
177
THR
172
H
ARG
173
n
178
ARG
173
H
ILE
174
n
179
ILE
174
H
ARG
175
n
180
ARG
175
H
ILE
176
n
181
ILE
176
H
THR
177
n
182
THR
177
H
ASP
178
n
183
ASP
178
H
ASN
179
n
184
ASN
179
H
MET
180
n
185
MET
180
H
PHE
181
n
186
PHE
181
H
CYS
182
n
187
CYS
182
H
ALA
183
n
188
ALA
183
H
GLY
184
n
189
GLY
184
H
TYR
184
n
190
A
TYR
184
H
LYS
185
n
191
LYS
185
H
PRO
186
n
192
PRO
186
H
ASP
186
n
193
A
ASP
186
H
GLU
186
n
194
B
GLU
186
H
GLY
186
n
195
C
GLY
186
H
LYS
186
n
196
D
LYS
186
H
ARG
187
n
197
ARG
187
H
GLY
188
n
198
GLY
188
H
ASP
189
n
199
ASP
189
H
ALA
190
n
200
ALA
190
H
CYS
191
n
201
CYS
191
H
GLU
192
n
202
GLU
192
H
GLY
193
n
203
GLY
193
H
ASP
194
n
204
ASP
194
H
SER
195
n
205
SER
195
H
GLY
196
n
206
GLY
196
H
GLY
197
n
207
GLY
197
H
PRO
198
n
208
PRO
198
H
PHE
199
n
209
PHE
199
H
VAL
200
n
210
VAL
200
H
MET
201
n
211
MET
201
H
LYS
202
n
212
LYS
202
H
SER
203
n
213
SER
203
H
PRO
204
n
214
PRO
204
H
PHE
204
n
215
A
PHE
204
H
ASN
204
n
216
B
ASN
204
H
ASN
205
n
217
ASN
205
H
ARG
206
n
218
ARG
206
H
TRP
207
n
219
TRP
207
H
TYR
208
n
220
TYR
208
H
GLN
209
n
221
GLN
209
H
MET
210
n
222
MET
210
H
GLY
211
n
223
GLY
211
H
ILE
212
n
224
ILE
212
H
VAL
213
n
225
VAL
213
H
SER
214
n
226
SER
214
H
TRP
215
n
227
TRP
215
H
GLY
216
n
228
GLY
216
H
GLU
217
n
229
GLU
217
H
GLY
219
n
230
GLY
219
H
CYS
220
n
231
CYS
220
H
ASP
221
n
232
ASP
221
H
ARG
221
n
233
A
ARG
221
H
ASP
222
n
234
ASP
222
H
GLY
223
n
235
GLY
223
H
LYS
224
n
236
LYS
224
H
TYR
225
n
237
TYR
225
H
GLY
226
n
238
GLY
226
H
PHE
227
n
239
PHE
227
H
TYR
228
n
240
TYR
228
H
THR
229
n
241
THR
229
H
HIS
230
n
242
HIS
230
H
VAL
231
n
243
VAL
231
H
PHE
232
n
244
PHE
232
H
ARG
233
n
245
ARG
233
H
LEU
234
n
246
LEU
234
H
LYS
235
n
247
LYS
235
H
LYS
236
n
248
LYS
236
H
TRP
237
n
249
TRP
237
H
ILE
238
n
250
ILE
238
H
GLN
239
n
251
GLN
239
H
LYS
240
n
252
LYS
240
H
VAL
241
n
253
VAL
241
H
ILE
242
n
254
ILE
242
H
ASP
243
n
255
ASP
243
H
GLN
244
n
256
GLN
244
H
PHE
245
n
257
PHE
245
H
n
258
246
H
n
259
247
H
GLY
1
n
1
F
GLY
1
L
SER
1
n
2
E
SER
1
L
GLY
1
n
3
D
GLY
1
L
GLU
1
n
4
C
GLU
1
L
ALA
1
n
5
B
ALA
1
L
ASP
1
n
6
A
ASP
1
L
CYS
1
n
7
CYS
1
L
GLY
2
n
8
GLY
2
L
LEU
3
n
9
LEU
3
L
ARG
4
n
10
ARG
4
L
PRO
5
n
11
PRO
5
L
LEU
6
n
12
LEU
6
L
PHE
7
n
13
PHE
7
L
GLU
8
n
14
GLU
8
L
LYS
9
n
15
LYS
9
L
LYS
10
n
16
LYS
10
L
SER
11
n
17
SER
11
L
LEU
12
n
18
LEU
12
L
GLU
13
n
19
GLU
13
L
ASP
14
n
20
ASP
14
L
LYS
14
n
21
A
LYS
14
L
THR
14
n
22
B
THR
14
L
GLU
14
n
23
C
GLU
14
L
ARG
14
n
24
D
ARG
14
L
GLU
14
n
25
E
GLU
14
L
LEU
14
n
26
F
LEU
14
L
LEU
14
n
27
G
LEU
14
L
GLU
14
n
28
H
GLU
14
L
SER
14
n
29
I
SER
14
L
TYR
14
n
30
J
TYR
14
L
ILE
14
n
31
K
ILE
14
L
ASP
14
n
32
L
ASP
14
L
GLY
14
n
33
M
GLY
14
L
ARG
15
n
34
ARG
15
L
SIN
55
n
1
SIN
55
P
TYR
56
n
2
TYR
56
P
GLU
57
n
3
GLU
57
P
PRO
58
n
4
PRO
58
P
ILE
59
n
5
ILE
59
P
HYP
60
n
6
HYP
60
P
GLU
61
n
7
GLU
61
P
GLU
62
n
8
GLU
62
P
SPH
63
n
9
SMF
63
P
CHA
64
n
10
ALC
64
P
GLN
65
n
11
GLN
65
P
author_and_software_defined_assembly
PISA
3
trimeric
5140
-8
12710
P
HYP
60
4-HYDROXYPROLINE
C
HYP
6
PRO
P
SMF
63
4-SULFOMETHYL-L-PHENYLALANINE
C
SMF
9
PHE
P
ALC
64
2-AMINO-3-CYCLOHEXYL-PROPIONIC ACID
C
ALC
10
ALA
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
H
N
SER
20
A
N
SER
5
H
O
VAL
157
A
O
VAL
162
H
O
LEU
160
A
O
LEU
165
H
N
GLY
136
A
N
GLY
136
H
N
ARG
137
A
N
ARG
137
H
O
VAL
200
A
O
VAL
210
H
N
MET
201
A
N
MET
211
H
O
TYR
208
A
O
TYR
220
H
N
TRP
215
A
N
TRP
227
H
O
PHE
227
A
O
PHE
239
H
O
TYR
228
A
O
TYR
240
H
N
PHE
181
A
N
PHE
186
H
N
LEU
33
A
N
LEU
18
H
O
CYS
42
A
O
CYS
28
H
N
SER
45
A
N
SER
31
H
O
LEU
53
A
O
LEU
39
H
N
THR
54
A
N
THR
40
H
O
ALA
104
A
O
ALA
101
H
O
LYS
107
A
O
LYS
104
H
N
GLU
86
A
N
GLU
82
H
O
SER
83
A
O
SER
79
H
N
VAL
66
A
N
VAL
61
H
O
LEU
65
A
O
LEU
60
H
N
PHE
34
A
N
PHE
19
A
H
N
TYR
60
A
N
TYR
47
F
H
O
LYS
60
A
O
LYS
52
A
1
H
TRP
147
A
TRP
148
1
Y
B
1
H
THR
147
A
THR
149
1
Y
C
1
H
ALA
147
A
ALA
150
1
Y
D
1
H
ASN
147
A
ASN
151
1
Y
E
1
H
VAL
147
A
VAL
152
1
Y
F
1
H
GLY
147
A
GLY
153
1
Y
G
1
H
LYS
147
A
LYS
154
1
Y
1
H
GLY
246
A
GLY
258
1
Y
1
H
GLU
247
A
GLU
259
1
Y
1
P
CG
HYP
60
WRONG HAND
1
H
PRO
28
-56.44
-8.08
1
H
ALA
44
-170.01
-178.87
1
H
SER
48
-170.41
-177.32
A
1
H
TYR
60
-165.06
83.44
E
1
H
ASP
60
58.19
17.45
G
1
H
ASN
60
-154.03
78.78
1
H
HIS
71
-135.38
-54.45
1
H
GLU
77
-63.79
79.89
1
H
ASN
78
74.68
-11.50
1
H
ASN
95
-102.88
78.84
A
1
H
GLU
97
-106.34
-74.42
1
H
SER
115
-163.00
-164.24
1
H
SER
195
-38.42
142.93
1
H
SER
214
-105.65
-65.46
E
1
L
SER
1
-64.36
84.63
C
1
L
GLU
1
-20.05
144.03
A
1
L
ASP
1
92.49
-21.64
1
L
PHE
7
-135.31
-88.31
J
1
L
TYR
14
-87.40
49.99
K
1
L
ILE
14
-162.30
-59.41
L
1
L
ASP
14
-155.87
-45.60
1
P
GLU
62
-52.94
-4.74
1
P
ALC
64
-103.52
41.03
protein_rep.p
protein.top
nnas.param
nnas.top
water_rep.par
water.top
ion.param
ion.top
inh.param
inh.top
33.9
3.26
0.00
-2.25
-3.58
0.00
0.33
0.211
0.009
0.172
2.46
44.13
613
11993
5.1
89.8
RANDOM
111808.37
111808.37
0.000000
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
1NZQ
Engh & Huber
FLAT MODEL
53.9508
0.354616
0.32
0.25
5.00
0.34
0.30
2.46
44.13
174
2608
34
0
2400
0.006
1.4
24.6
0.84
2.02
1.50
3.62
2.00
2.26
2.00
3.70
2.50
0.299
0.039
0.247
2.61
58
1183
6
4.7
56.4
20.0
2.44
50
2ANK
13596
12217
2
0.0803
1
14.1
89.9
0.194
2.44
2.53
3.6
1170
1
51.88
refinement
CNX
2002
data reduction
X-GEN
data scaling
X-GEN
phasing
CNX
2002
orally active thrombin inhibitors in complex with thrombin and an exosite decapeptide
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
5
N
N
H
ALA
55
A
ALA
41
HELX_P
H
CYS
58
A
CYS
44
5
1
4
H
PRO
60
A
PRO
48
HELX_P
H
ASP
60
A
ASP
51
5
2
4
B
E
H
THR
60
A
THR
55
HELX_P
H
ASN
62
A
ASN
57
5
3
3
I
H
ASP
125
A
ASP
122
HELX_P
H
LEU
130
A
LEU
130
1
4
9
H
GLU
164
A
GLU
169
HELX_P
H
ASP
170
A
ASP
175
1
5
7
H
LEU
234
A
LEU
246
HELX_P
H
PHE
245
A
PHE
257
1
6
12
L
PHE
7
B
PHE
13
HELX_P
L
SER
11
B
SER
17
5
7
5
L
THR
14
B
THR
22
HELX_P
L
SER
14
B
SER
29
1
8
8
B
I
P
HYP
60
C
HYP
6
HELX_P
P
ALC
64
C
ALC
10
5
9
5
disulf
2.026
H
CYS
42
A
SG
CYS
28
1_555
H
CYS
58
A
SG
CYS
44
1_555
disulf
2.035
H
CYS
122
A
SG
CYS
119
1_555
L
CYS
1
B
SG
CYS
7
1_555
disulf
2.028
H
CYS
168
A
SG
CYS
173
1_555
H
CYS
182
A
SG
CYS
187
1_555
disulf
2.026
H
CYS
191
A
SG
CYS
201
1_555
H
CYS
220
A
SG
CYS
231
1_555
covale
1.327
both
P
SIN
55
C
C4
SIN
1
1_555
P
TYR
56
C
N
TYR
2
1_555
covale
1.340
both
P
ILE
59
C
C
ILE
5
1_555
P
HYP
60
C
N
HYP
6
1_555
covale
1.328
both
P
HYP
60
C
C
HYP
6
1_555
P
GLU
61
C
N
GLU
7
1_555
covale
1.329
both
P
GLU
62
C
C
GLU
8
1_555
P
SMF
63
C
N
SMF
9
1_555
covale
1.328
both
P
SMF
63
C
C
SMF
9
1_555
P
ALC
64
C
N
ALC
10
1_555
covale
1.331
both
P
ALC
64
C
C
ALC
10
1_555
P
GLN
65
C
N
GLN
11
1_555
HYDROLASE/HYDROLASE INHIBITOR
blood clotting, hydrolase, serine protease, hydrolase-hydrolase inhibitor COMPLEX
H
SER
36
A
SER
22
A
1
H
PRO
37
A
PRO
23
-0.83
THRB_HUMAN
UNP
1
364
P00734
IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM
LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL
QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY
THVFRLKKWIQKVIDQFGE
THRB_HUMAN
UNP
2
330
P00734
GSGEADCGLRPLFEKKSLEDKTERELLESYIDGR
2ANK
PDB
3
55
2ANK
XYEPIPEEFAQ
364
622
2ANK
16
247
P00734
H
1
1
259
330
363
2ANK
1
15
P00734
F
L
2
1
34
55
65
2ANK
55
65
2ANK
P
3
1
11
7
7
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
H
SER
20
A
SER
5
H
ASP
21
A
ASP
6
H
GLN
156
A
GLN
161
H
PRO
161
A
PRO
166
H
LYS
135
A
LYS
135
H
GLY
140
A
GLY
140
H
PRO
198
A
PRO
208
H
LYS
202
A
LYS
212
H
TRP
207
A
TRP
219
H
TRP
215
A
TRP
227
H
GLY
226
A
GLY
238
H
HIS
230
A
HIS
242
H
MET
180
A
MET
185
H
ALA
183
A
ALA
188
H
GLN
30
A
GLN
15
H
ARG
35
A
ARG
20
H
GLU
39
A
GLU
25
H
LEU
46
A
LEU
32
H
TRP
51
A
TRP
37
H
THR
54
A
THR
40
H
ALA
104
A
ALA
101
H
LEU
108
A
LEU
105
H
LYS
81
A
LYS
77
H
ILE
90
A
ILE
86
H
LEU
64
A
LEU
59
H
ILE
68
A
ILE
63
H
GLN
30
A
GLN
15
H
ARG
35
A
ARG
20
H
LEU
60
A
LEU
46
H
TYR
60
A
TYR
47
A
H
LYS
60
A
LYS
52
H
ASN
60
A
ASN
53
F
G
BINDING SITE FOR RESIDUE N12 H 501
H
N12
501
Software
15
BINDING SITE FOR CHAIN P OF SYNTHETIC PEPTIDE
Software
20
H
TYR
60
A
TYR
47
A
15
1_555
H
TRP
60
A
TRP
50
D
15
1_555
H
GLU
97
A
GLU
94
A
15
1_555
H
LEU
99
A
LEU
96
15
1_555
H
ASP
189
A
ASP
199
15
1_555
H
ALA
190
A
ALA
200
15
1_555
H
SER
195
A
SER
205
15
1_555
H
SER
214
A
SER
226
15
1_555
H
TRP
215
A
TRP
227
15
1_555
H
GLY
216
A
GLY
228
15
1_555
H
GLU
217
A
GLU
229
15
1_555
H
GLY
219
A
GLY
230
15
1_555
H
GLY
226
A
GLY
238
15
1_555
H
HOH
546
E
HOH
15
1_555
H
HOH
647
E
HOH
15
1_555
H
LYS
36
A
LYS
21
20
1_555
H
GLN
38
A
GLN
24
20
1_555
H
LEU
40
A
LEU
26
20
1_555
H
ASN
62
A
ASN
57
20
1_555
H
LEU
65
A
LEU
60
20
1_555
H
ARG
73
A
ARG
68
20
1_555
H
THR
74
A
THR
69
20
1_555
H
ARG
75
A
ARG
70
20
2_555
H
ARG
75
A
ARG
70
20
1_555
H
TYR
76
A
TYR
71
20
1_555
H
LYS
81
A
LYS
77
20
1_555
H
ILE
82
A
ILE
78
20
1_555
H
MET
84
A
MET
80
20
1_555
H
GLN
151
A
GLN
156
20
1_555
H
HOH
522
E
HOH
20
1_555
H
HOH
534
E
HOH
20
2_555
H
HOH
622
E
HOH
20
1_555
P
HOH
39
G
HOH
20
1_555
P
HOH
137
G
HOH
20
1_555
P
HOH
139
G
HOH
20
1_555
5
C 1 2 1