data_2AVH # _entry.id 2AVH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2AVH pdb_00002avh 10.2210/pdb2avh/pdb NDB UD0062 ? ? RCSB RCSB034361 ? ? WWPDB D_1000034361 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-03-28 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-11 5 'Structure model' 1 4 2024-02-14 6 'Structure model' 1 5 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_struct_conn_angle 6 5 'Structure model' pdbx_struct_special_symmetry 7 5 'Structure model' struct_conn 8 5 'Structure model' struct_site 9 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 19 5 'Structure model' '_pdbx_struct_conn_angle.value' 20 5 'Structure model' '_struct_conn.pdbx_dist_value' 21 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 22 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 23 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 24 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 25 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 26 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 27 5 'Structure model' '_struct_conn.ptnr1_symmetry' 28 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 29 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 30 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 31 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 32 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 33 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 34 5 'Structure model' '_struct_conn.ptnr2_symmetry' 35 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 36 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 37 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 2AVH _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2005-08-30 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2AVJ _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hazel, P.' 1 'Parkinson, G.N.' 2 'Neidle, S.' 3 # _citation.id primary _citation.title 'Topology variation and loop structural homology in crystal and simulated structures of a bimolecular DNA quadruplex.' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 128 _citation.page_first 5480 _citation.page_last 5487 _citation.year 2006 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16620121 _citation.pdbx_database_id_DOI 10.1021/ja058577+ # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hazel, P.' 1 ? primary 'Parkinson, G.N.' 2 ? primary 'Neidle, S.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*GP*GP*GP*TP*TP*TP*GP*GP*GP*G)-3'" 3501.267 1 ? ? ? ? 2 non-polymer syn 'POTASSIUM ION' 39.098 4 ? ? ? ? 3 water nat water 18.015 54 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DG)(DG)(DG)(DT)(DT)(DT)(DG)(DG)(DG)(DG)' _entity_poly.pdbx_seq_one_letter_code_can GGGGTTTGGGG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DG n 1 4 DG n 1 5 DT n 1 6 DT n 1 7 DT n 1 8 DG n 1 9 DG n 1 10 DG n 1 11 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DT 5 5 5 DT T A . n A 1 6 DT 6 6 6 DT T A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DG 8 8 8 DG G A . n A 1 9 DG 9 9 9 DG G A . n A 1 10 DG 10 10 10 DG G A . n A 1 11 DG 11 11 11 DG G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K 1 12 12 K K A . C 2 K 1 13 13 K K A . D 2 K 1 14 14 K K A . E 2 K 1 15 15 K K A . F 3 HOH 1 16 16 HOH HOH A . F 3 HOH 2 17 17 HOH HOH A . F 3 HOH 3 18 18 HOH HOH A . F 3 HOH 4 19 19 HOH HOH A . F 3 HOH 5 20 20 HOH HOH A . F 3 HOH 6 21 21 HOH HOH A . F 3 HOH 7 22 22 HOH HOH A . F 3 HOH 8 23 23 HOH HOH A . F 3 HOH 9 24 24 HOH HOH A . F 3 HOH 10 25 25 HOH HOH A . F 3 HOH 11 26 26 HOH HOH A . F 3 HOH 12 27 27 HOH HOH A . F 3 HOH 13 28 28 HOH HOH A . F 3 HOH 14 29 29 HOH HOH A . F 3 HOH 15 30 30 HOH HOH A . F 3 HOH 16 31 31 HOH HOH A . F 3 HOH 17 32 32 HOH HOH A . F 3 HOH 18 33 33 HOH HOH A . F 3 HOH 19 34 34 HOH HOH A . F 3 HOH 20 35 35 HOH HOH A . F 3 HOH 21 36 36 HOH HOH A . F 3 HOH 22 37 37 HOH HOH A . F 3 HOH 23 38 38 HOH HOH A . F 3 HOH 24 39 39 HOH HOH A . F 3 HOH 25 40 40 HOH HOH A . F 3 HOH 26 41 41 HOH HOH A . F 3 HOH 27 42 42 HOH HOH A . F 3 HOH 28 43 43 HOH HOH A . F 3 HOH 29 44 44 HOH HOH A . F 3 HOH 30 45 45 HOH HOH A . F 3 HOH 31 46 46 HOH HOH A . F 3 HOH 32 47 47 HOH HOH A . F 3 HOH 33 48 48 HOH HOH A . F 3 HOH 34 49 49 HOH HOH A . F 3 HOH 35 50 50 HOH HOH A . F 3 HOH 36 51 51 HOH HOH A . F 3 HOH 37 52 52 HOH HOH A . F 3 HOH 38 53 53 HOH HOH A . F 3 HOH 39 54 54 HOH HOH A . F 3 HOH 40 55 55 HOH HOH A . F 3 HOH 41 56 56 HOH HOH A . F 3 HOH 42 57 57 HOH HOH A . F 3 HOH 43 58 58 HOH HOH A . F 3 HOH 44 59 59 HOH HOH A . F 3 HOH 45 60 60 HOH HOH A . F 3 HOH 46 61 61 HOH HOH A . F 3 HOH 47 62 62 HOH HOH A . F 3 HOH 48 63 63 HOH HOH A . F 3 HOH 49 64 64 HOH HOH A . F 3 HOH 50 65 65 HOH HOH A . F 3 HOH 51 66 66 HOH HOH A . F 3 HOH 52 67 67 HOH HOH A . F 3 HOH 53 68 68 HOH HOH A . F 3 HOH 54 69 69 HOH HOH A . # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 EPMR 2.5 'Sep 13 2000' program 'Charles R' crk@agouron.com phasing http://www.msg.ucsf.edu/local/programs/epmr/epmr.html ? ? 3 REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran ? 4 PDB_EXTRACT 1.700 'May. 30, 2005' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 5 # _cell.length_a 29.932 _cell.length_b 37.112 _cell.length_c 43.653 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.entry_id 2AVH _cell.pdbx_unique_axis ? _cell.Z_PDB 8 # _symmetry.space_group_name_H-M 'C 2 2 2' _symmetry.entry_id 2AVH _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 21 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.entry_id 2AVH _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.83 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 32.14 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 284.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details 'sodium iodide, sodium cacodylate, PEG 400, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 284.15K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'sodium iodide' ? ? ? 1 2 1 'sodium cacodylate' ? ? ? 1 3 1 'PEG 400' ? ? ? 1 4 1 H2O ? ? ? 1 5 2 'sodium iodide' ? ? ? 1 6 2 'sodium cacodylate' ? ? ? 1 7 2 'PEG 400' ? ? ? 1 8 2 H2O ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 99 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2004-11-14 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-4' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9792 _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-4 # _reflns.entry_id 2AVH _reflns.d_resolution_low 25.00 _reflns.d_resolution_high 1.50 _reflns.number_obs 4066 _reflns.percent_possible_obs 99.000 _reflns.pdbx_Rmerge_I_obs 0.054 _reflns.pdbx_chi_squared 1.121 _reflns.pdbx_redundancy ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_netI_over_sigmaI ? _reflns.pdbx_Rsym_value ? _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.number_all 4066 _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_low 1.540 _reflns_shell.d_res_high 1.50 _reflns_shell.number_measured_obs 390 _reflns_shell.percent_possible_obs 98.700 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_chi_squared 0.365 _reflns_shell.pdbx_redundancy ? _reflns_shell.number_unique_obs ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.percent_possible_all 96.127 _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.ls_d_res_high 1.500 _refine.ls_d_res_low 23.3 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 98.910 _refine.ls_number_reflns_obs 4065 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ? _refine.ls_R_factor_all 0.199 _refine.ls_R_factor_R_work 0.198 _refine.ls_R_factor_R_free 0.208 _refine.ls_percent_reflns_R_free 4.500 _refine.ls_number_reflns_R_free 184 _refine.B_iso_mean 19.437 _refine.aniso_B[1][1] -0.660 _refine.aniso_B[2][2] 0.490 _refine.aniso_B[3][3] 0.160 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.959 _refine.correlation_coeff_Fo_to_Fc_free 0.954 _refine.pdbx_overall_ESU_R 0.099 _refine.pdbx_overall_ESU_R_Free 0.087 _refine.overall_SU_ML 0.063 _refine.overall_SU_B 1.752 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.entry_id 2AVH _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 4065 _refine.ls_R_factor_obs 0.199 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'GGGG(+U)TTGGGG chain A (P21)' _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 233 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 54 _refine_hist.number_atoms_total 291 _refine_hist.d_res_high 1.500 _refine_hist.d_res_low 23.3 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 262 0.004 0.021 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 406 1.150 3.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 43 0.049 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 126 0.003 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 90 0.310 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 150 0.272 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 38 0.110 0.200 ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined 4 0.060 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 32 0.375 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 22 0.125 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined 4 0.096 0.200 ? 'X-RAY DIFFRACTION' ? r_scbond_it 282 1.030 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 406 1.517 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.50 _refine_ls_shell.d_res_low 1.540 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 96.127 _refine_ls_shell.number_reflns_R_work 262 _refine_ls_shell.R_factor_R_work 0.299 _refine_ls_shell.R_factor_R_free 0.222 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 11 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2AVH _struct.title 'G4T3G4 dimeric quadruplex structure' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2AVH _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'quadruplex, loop, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2AVH _struct_ref.pdbx_db_accession 2AVH _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2AVH _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 11 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2AVH _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 11 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 11 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_565 -x+1/2,-y+3/2,z -1.0000000000 0.0000000000 0.0000000000 14.9660000000 0.0000000000 -1.0000000000 0.0000000000 55.6680000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 1 O6 ? ? ? 6_565 B K . K ? ? A DG 1 A K 12 1_555 ? ? ? ? ? ? ? 2.691 ? ? metalc2 metalc ? ? A DG 2 O6 ? ? ? 6_565 B K . K ? ? A DG 2 A K 12 1_555 ? ? ? ? ? ? ? 3.015 ? ? metalc3 metalc ? ? A DG 2 O6 ? ? ? 1_555 C K . K ? ? A DG 2 A K 13 1_555 ? ? ? ? ? ? ? 2.868 ? ? metalc4 metalc ? ? A DG 2 O6 ? ? ? 6_565 C K . K ? ? A DG 2 A K 13 1_555 ? ? ? ? ? ? ? 2.782 ? ? metalc5 metalc ? ? A DG 3 O6 ? ? ? 1_555 B K . K ? ? A DG 3 A K 12 1_555 ? ? ? ? ? ? ? 2.885 ? ? metalc6 metalc ? ? A DG 3 O6 ? ? ? 1_555 C K . K ? ? A DG 3 A K 13 1_555 ? ? ? ? ? ? ? 2.690 ? ? metalc7 metalc ? ? A DG 3 O6 ? ? ? 6_565 C K . K ? ? A DG 3 A K 13 1_555 ? ? ? ? ? ? ? 3.075 ? ? metalc8 metalc ? ? A DG 4 O6 ? ? ? 1_555 B K . K ? ? A DG 4 A K 12 1_555 ? ? ? ? ? ? ? 2.731 ? ? metalc9 metalc ? ? A DG 8 O6 ? ? ? 1_555 B K . K ? ? A DG 8 A K 12 1_555 ? ? ? ? ? ? ? 2.797 ? ? metalc10 metalc ? ? A DG 8 N2 ? ? ? 6_565 E K . K ? ? A DG 8 A K 15 1_555 ? ? ? ? ? ? ? 3.700 ? ? metalc11 metalc ? ? A DG 9 O6 ? ? ? 1_555 B K . K ? ? A DG 9 A K 12 1_555 ? ? ? ? ? ? ? 2.908 ? ? metalc12 metalc ? ? A DG 9 O6 ? ? ? 1_555 C K . K ? ? A DG 9 A K 13 1_555 ? ? ? ? ? ? ? 2.759 ? ? metalc13 metalc ? ? A DG 9 O6 ? ? ? 6_565 C K . K ? ? A DG 9 A K 13 1_555 ? ? ? ? ? ? ? 2.957 ? ? metalc14 metalc ? ? A DG 10 O6 ? ? ? 6_565 B K . K ? ? A DG 10 A K 12 1_555 ? ? ? ? ? ? ? 3.081 ? ? metalc15 metalc ? ? A DG 10 O6 ? ? ? 1_555 C K . K ? ? A DG 10 A K 13 1_555 ? ? ? ? ? ? ? 2.858 ? ? metalc16 metalc ? ? A DG 10 O6 ? ? ? 6_565 C K . K ? ? A DG 10 A K 13 1_555 ? ? ? ? ? ? ? 2.950 ? ? metalc17 metalc ? ? A DG 10 N2 ? ? ? 1_555 E K . K ? ? A DG 10 A K 15 1_555 ? ? ? ? ? ? ? 3.681 ? ? metalc18 metalc ? ? A DG 11 O6 ? ? ? 6_565 B K . K ? ? A DG 11 A K 12 1_555 ? ? ? ? ? ? ? 2.679 ? ? metalc19 metalc ? ? B K . K ? ? ? 1_555 C K . K ? ? A K 12 A K 13 1_555 ? ? ? ? ? ? ? 3.311 ? ? metalc20 metalc ? ? B K . K ? ? ? 1_555 C K . K ? ? A K 12 A K 13 6_565 ? ? ? ? ? ? ? 3.579 ? ? metalc21 metalc ? ? D K . K ? ? ? 1_555 F HOH . O ? ? A K 14 A HOH 55 1_555 ? ? ? ? ? ? ? 2.779 ? ? metalc22 metalc ? ? D K . K ? ? ? 1_555 F HOH . O ? ? A K 14 A HOH 55 4_575 ? ? ? ? ? ? ? 3.646 ? ? metalc23 metalc ? ? E K . K ? ? ? 1_555 F HOH . O ? ? A K 15 A HOH 25 6_565 ? ? ? ? ? ? ? 2.670 ? ? hydrog1 hydrog ? ? A DG 1 N7 ? ? ? 1_555 A DG 11 N2 ? ? A DG 1 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DG 11 N1 ? ? A DG 1 A DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DG 10 O6 ? ? A DG 2 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DG 10 N7 ? ? A DG 2 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 3 N7 ? ? ? 1_555 A DG 9 N2 ? ? A DG 3 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DG 9 N1 ? ? A DG 3 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DG 8 O6 ? ? A DG 4 A DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DG 8 N7 ? ? A DG 4 A DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 1 ? A DG 1 ? 6_565 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 2 ? A DG 2 ? 6_565 69.9 ? 2 O6 ? A DG 1 ? A DG 1 ? 6_565 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 3 ? A DG 3 ? 1_555 116.3 ? 3 O6 ? A DG 2 ? A DG 2 ? 6_565 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 3 ? A DG 3 ? 1_555 67.9 ? 4 O6 ? A DG 1 ? A DG 1 ? 6_565 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 4 ? A DG 4 ? 1_555 74.3 ? 5 O6 ? A DG 2 ? A DG 2 ? 6_565 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 4 ? A DG 4 ? 1_555 104.6 ? 6 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 4 ? A DG 4 ? 1_555 72.8 ? 7 O6 ? A DG 1 ? A DG 1 ? 6_565 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 117.4 ? 8 O6 ? A DG 2 ? A DG 2 ? 6_565 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 169.2 ? 9 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 101.3 ? 10 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 71.6 ? 11 O6 ? A DG 1 ? A DG 1 ? 6_565 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 164.3 ? 12 O6 ? A DG 2 ? A DG 2 ? 6_565 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 103.7 ? 13 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 72.1 ? 14 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 121.4 ? 15 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 71.2 ? 16 O6 ? A DG 1 ? A DG 1 ? 6_565 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 6_565 99.0 ? 17 O6 ? A DG 2 ? A DG 2 ? 6_565 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 6_565 67.1 ? 18 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 6_565 105.7 ? 19 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 6_565 171.0 ? 20 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 6_565 117.2 ? 21 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 6_565 65.4 ? 22 O6 ? A DG 1 ? A DG 1 ? 6_565 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 6_565 76.0 ? 23 O6 ? A DG 2 ? A DG 2 ? 6_565 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 6_565 115.6 ? 24 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 6_565 167.0 ? 25 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 6_565 116.5 ? 26 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 6_565 74.8 ? 27 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 6_565 94.9 ? 28 O6 ? A DG 10 ? A DG 10 ? 6_565 K ? B K . ? A K 12 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 6_565 66.5 ? 29 O6 ? A DG 1 ? A DG 1 ? 6_565 K ? B K . ? A K 12 ? 1_555 K ? C K . ? A K 13 ? 1_555 121.4 ? 30 O6 ? A DG 2 ? A DG 2 ? 6_565 K ? B K . ? A K 12 ? 1_555 K ? C K . ? A K 13 ? 1_555 51.9 ? 31 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 12 ? 1_555 K ? C K . ? A K 13 ? 1_555 50.9 ? 32 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 12 ? 1_555 K ? C K . ? A K 13 ? 1_555 123.3 ? 33 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? B K . ? A K 12 ? 1_555 K ? C K . ? A K 13 ? 1_555 121.2 ? 34 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? B K . ? A K 12 ? 1_555 K ? C K . ? A K 13 ? 1_555 52.2 ? 35 O6 ? A DG 10 ? A DG 10 ? 6_565 K ? B K . ? A K 12 ? 1_555 K ? C K . ? A K 13 ? 1_555 54.8 ? 36 O6 ? A DG 11 ? A DG 11 ? 6_565 K ? B K . ? A K 12 ? 1_555 K ? C K . ? A K 13 ? 1_555 120.1 ? 37 O6 ? A DG 1 ? A DG 1 ? 6_565 K ? B K . ? A K 12 ? 1_555 K ? C K . ? A K 13 ? 6_565 119.2 ? 38 O6 ? A DG 2 ? A DG 2 ? 6_565 K ? B K . ? A K 12 ? 1_555 K ? C K . ? A K 13 ? 6_565 50.7 ? 39 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? B K . ? A K 12 ? 1_555 K ? C K . ? A K 13 ? 6_565 55.6 ? 40 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? B K . ? A K 12 ? 1_555 K ? C K . ? A K 13 ? 6_565 127.6 ? 41 O6 ? A DG 8 ? A DG 8 ? 1_555 K ? B K . ? A K 12 ? 1_555 K ? C K . ? A K 13 ? 6_565 123.3 ? 42 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? B K . ? A K 12 ? 1_555 K ? C K . ? A K 13 ? 6_565 53.0 ? 43 O6 ? A DG 10 ? A DG 10 ? 6_565 K ? B K . ? A K 12 ? 1_555 K ? C K . ? A K 13 ? 6_565 50.1 ? 44 O6 ? A DG 11 ? A DG 11 ? 6_565 K ? B K . ? A K 12 ? 1_555 K ? C K . ? A K 13 ? 6_565 115.8 ? 45 K ? C K . ? A K 13 ? 1_555 K ? B K . ? A K 12 ? 1_555 K ? C K . ? A K 13 ? 6_565 4.8 ? 46 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 2 ? A DG 2 ? 6_565 75.8 ? 47 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 3 ? A DG 3 ? 1_555 92.9 ? 48 O6 ? A DG 2 ? A DG 2 ? 6_565 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 3 ? A DG 3 ? 1_555 74.0 ? 49 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 3 ? A DG 3 ? 6_565 67.3 ? 50 O6 ? A DG 2 ? A DG 2 ? 6_565 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 3 ? A DG 3 ? 6_565 86.8 ? 51 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 3 ? A DG 3 ? 6_565 155.5 ? 52 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 162.7 ? 53 O6 ? A DG 2 ? A DG 2 ? 6_565 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 114.4 ? 54 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 77.5 ? 55 O6 ? A DG 3 ? A DG 3 ? 6_565 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 125.3 ? 56 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 6_565 106.2 ? 57 O6 ? A DG 2 ? A DG 2 ? 6_565 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 6_565 151.5 ? 58 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 6_565 133.2 ? 59 O6 ? A DG 3 ? A DG 3 ? 6_565 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 6_565 68.8 ? 60 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 6_565 72.0 ? 61 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 72.1 ? 62 O6 ? A DG 2 ? A DG 2 ? 6_565 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 136.3 ? 63 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 78.9 ? 64 O6 ? A DG 3 ? A DG 3 ? 6_565 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 106.6 ? 65 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 91.8 ? 66 O6 ? A DG 9 ? A DG 9 ? 6_565 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 67.7 ? 67 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 6_565 128.3 ? 68 O6 ? A DG 2 ? A DG 2 ? 6_565 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 6_565 71.9 ? 69 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 6_565 114.9 ? 70 O6 ? A DG 3 ? A DG 3 ? 6_565 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 6_565 71.6 ? 71 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 6_565 69.1 ? 72 O6 ? A DG 9 ? A DG 9 ? 6_565 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 6_565 86.1 ? 73 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? C K . ? A K 13 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 6_565 151.7 ? 74 N2 ? A DG 8 ? A DG 8 ? 6_565 K ? E K . ? A K 15 ? 1_555 N2 ? A DG 10 ? A DG 10 ? 1_555 53.4 ? 75 N2 ? A DG 8 ? A DG 8 ? 6_565 K ? E K . ? A K 15 ? 1_555 O ? F HOH . ? A HOH 25 ? 6_565 60.2 ? 76 N2 ? A DG 10 ? A DG 10 ? 1_555 K ? E K . ? A K 15 ? 1_555 O ? F HOH . ? A HOH 25 ? 6_565 110.0 ? 77 O ? F HOH . ? A HOH 55 ? 1_555 K ? D K . ? A K 14 ? 1_555 O ? F HOH . ? A HOH 55 ? 4_575 10.6 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A K 12 ? 10 'BINDING SITE FOR RESIDUE K A 12' AC2 Software A K 13 ? 10 'BINDING SITE FOR RESIDUE K A 13' AC3 Software A K 14 ? 1 'BINDING SITE FOR RESIDUE K A 14' AC4 Software A K 15 ? 2 'BINDING SITE FOR RESIDUE K A 15' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 DG A 1 ? DG A 1 . ? 6_565 ? 2 AC1 10 DG A 2 ? DG A 2 . ? 6_565 ? 3 AC1 10 DG A 3 ? DG A 3 . ? 1_555 ? 4 AC1 10 DG A 4 ? DG A 4 . ? 1_555 ? 5 AC1 10 DG A 8 ? DG A 8 . ? 1_555 ? 6 AC1 10 DG A 9 ? DG A 9 . ? 1_555 ? 7 AC1 10 DG A 10 ? DG A 10 . ? 6_565 ? 8 AC1 10 DG A 11 ? DG A 11 . ? 6_565 ? 9 AC1 10 K C . ? K A 13 . ? 6_565 ? 10 AC1 10 K C . ? K A 13 . ? 1_555 ? 11 AC2 10 DG A 2 ? DG A 2 . ? 1_555 ? 12 AC2 10 DG A 2 ? DG A 2 . ? 6_565 ? 13 AC2 10 DG A 3 ? DG A 3 . ? 6_565 ? 14 AC2 10 DG A 3 ? DG A 3 . ? 1_555 ? 15 AC2 10 DG A 9 ? DG A 9 . ? 1_555 ? 16 AC2 10 DG A 9 ? DG A 9 . ? 6_565 ? 17 AC2 10 DG A 10 ? DG A 10 . ? 6_565 ? 18 AC2 10 DG A 10 ? DG A 10 . ? 1_555 ? 19 AC2 10 K B . ? K A 12 . ? 1_555 ? 20 AC2 10 K B . ? K A 12 . ? 6_565 ? 21 AC3 1 HOH F . ? HOH A 55 . ? 1_555 ? 22 AC4 2 DG A 10 ? DG A 10 . ? 1_555 ? 23 AC4 2 HOH F . ? HOH A 25 . ? 6_565 ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 DG _pdbx_validate_rmsd_angle.auth_seq_id_1 9 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 DG _pdbx_validate_rmsd_angle.auth_seq_id_2 9 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N9 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 DG _pdbx_validate_rmsd_angle.auth_seq_id_3 9 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 112.01 _pdbx_validate_rmsd_angle.angle_target_value 108.30 _pdbx_validate_rmsd_angle.angle_deviation 3.71 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.30 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A K 13 ? C K . 2 1 A HOH 20 ? F HOH . # _pdbx_phasing_MR.entry_id 2AVH _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor 0.645 _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc 0.232 _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation ? _pdbx_phasing_MR.d_res_low_rotation ? _pdbx_phasing_MR.d_res_high_translation 3.500 _pdbx_phasing_MR.d_res_low_translation 25.000 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DG OP3 O N N 1 DG P P N N 2 DG OP1 O N N 3 DG OP2 O N N 4 DG "O5'" O N N 5 DG "C5'" C N N 6 DG "C4'" C N R 7 DG "O4'" O N N 8 DG "C3'" C N S 9 DG "O3'" O N N 10 DG "C2'" C N N 11 DG "C1'" C N R 12 DG N9 N Y N 13 DG C8 C Y N 14 DG N7 N Y N 15 DG C5 C Y N 16 DG C6 C N N 17 DG O6 O N N 18 DG N1 N N N 19 DG C2 C N N 20 DG N2 N N N 21 DG N3 N N N 22 DG C4 C Y N 23 DG HOP3 H N N 24 DG HOP2 H N N 25 DG "H5'" H N N 26 DG "H5''" H N N 27 DG "H4'" H N N 28 DG "H3'" H N N 29 DG "HO3'" H N N 30 DG "H2'" H N N 31 DG "H2''" H N N 32 DG "H1'" H N N 33 DG H8 H N N 34 DG H1 H N N 35 DG H21 H N N 36 DG H22 H N N 37 DT OP3 O N N 38 DT P P N N 39 DT OP1 O N N 40 DT OP2 O N N 41 DT "O5'" O N N 42 DT "C5'" C N N 43 DT "C4'" C N R 44 DT "O4'" O N N 45 DT "C3'" C N S 46 DT "O3'" O N N 47 DT "C2'" C N N 48 DT "C1'" C N R 49 DT N1 N N N 50 DT C2 C N N 51 DT O2 O N N 52 DT N3 N N N 53 DT C4 C N N 54 DT O4 O N N 55 DT C5 C N N 56 DT C7 C N N 57 DT C6 C N N 58 DT HOP3 H N N 59 DT HOP2 H N N 60 DT "H5'" H N N 61 DT "H5''" H N N 62 DT "H4'" H N N 63 DT "H3'" H N N 64 DT "HO3'" H N N 65 DT "H2'" H N N 66 DT "H2''" H N N 67 DT "H1'" H N N 68 DT H3 H N N 69 DT H71 H N N 70 DT H72 H N N 71 DT H73 H N N 72 DT H6 H N N 73 HOH O O N N 74 HOH H1 H N N 75 HOH H2 H N N 76 K K K N N 77 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DG OP3 P sing N N 1 DG OP3 HOP3 sing N N 2 DG P OP1 doub N N 3 DG P OP2 sing N N 4 DG P "O5'" sing N N 5 DG OP2 HOP2 sing N N 6 DG "O5'" "C5'" sing N N 7 DG "C5'" "C4'" sing N N 8 DG "C5'" "H5'" sing N N 9 DG "C5'" "H5''" sing N N 10 DG "C4'" "O4'" sing N N 11 DG "C4'" "C3'" sing N N 12 DG "C4'" "H4'" sing N N 13 DG "O4'" "C1'" sing N N 14 DG "C3'" "O3'" sing N N 15 DG "C3'" "C2'" sing N N 16 DG "C3'" "H3'" sing N N 17 DG "O3'" "HO3'" sing N N 18 DG "C2'" "C1'" sing N N 19 DG "C2'" "H2'" sing N N 20 DG "C2'" "H2''" sing N N 21 DG "C1'" N9 sing N N 22 DG "C1'" "H1'" sing N N 23 DG N9 C8 sing Y N 24 DG N9 C4 sing Y N 25 DG C8 N7 doub Y N 26 DG C8 H8 sing N N 27 DG N7 C5 sing Y N 28 DG C5 C6 sing N N 29 DG C5 C4 doub Y N 30 DG C6 O6 doub N N 31 DG C6 N1 sing N N 32 DG N1 C2 sing N N 33 DG N1 H1 sing N N 34 DG C2 N2 sing N N 35 DG C2 N3 doub N N 36 DG N2 H21 sing N N 37 DG N2 H22 sing N N 38 DG N3 C4 sing N N 39 DT OP3 P sing N N 40 DT OP3 HOP3 sing N N 41 DT P OP1 doub N N 42 DT P OP2 sing N N 43 DT P "O5'" sing N N 44 DT OP2 HOP2 sing N N 45 DT "O5'" "C5'" sing N N 46 DT "C5'" "C4'" sing N N 47 DT "C5'" "H5'" sing N N 48 DT "C5'" "H5''" sing N N 49 DT "C4'" "O4'" sing N N 50 DT "C4'" "C3'" sing N N 51 DT "C4'" "H4'" sing N N 52 DT "O4'" "C1'" sing N N 53 DT "C3'" "O3'" sing N N 54 DT "C3'" "C2'" sing N N 55 DT "C3'" "H3'" sing N N 56 DT "O3'" "HO3'" sing N N 57 DT "C2'" "C1'" sing N N 58 DT "C2'" "H2'" sing N N 59 DT "C2'" "H2''" sing N N 60 DT "C1'" N1 sing N N 61 DT "C1'" "H1'" sing N N 62 DT N1 C2 sing N N 63 DT N1 C6 sing N N 64 DT C2 O2 doub N N 65 DT C2 N3 sing N N 66 DT N3 C4 sing N N 67 DT N3 H3 sing N N 68 DT C4 O4 doub N N 69 DT C4 C5 sing N N 70 DT C5 C7 sing N N 71 DT C5 C6 doub N N 72 DT C7 H71 sing N N 73 DT C7 H72 sing N N 74 DT C7 H73 sing N N 75 DT C6 H6 sing N N 76 HOH O H1 sing N N 77 HOH O H2 sing N N 78 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2AVH 'double helix' 2AVH 'hairpin loop' 2AVH 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 A DG 11 1_555 -1.659 -3.318 0.900 -31.394 9.060 90.287 1 A_DG1:DG11_A A 1 ? A 11 ? 6 ? 1 A DG 2 1_555 A DG 10 1_555 1.698 3.540 -0.257 9.947 11.659 -88.288 2 A_DG2:DG10_A A 2 ? A 10 ? 6 ? 1 A DG 3 1_555 A DG 9 1_555 -1.804 -3.425 0.138 -4.214 -9.864 88.809 3 A_DG3:DG9_A A 3 ? A 9 ? 6 ? 1 A DG 4 1_555 A DG 8 1_555 1.613 3.375 -0.641 14.696 -14.174 -90.722 4 A_DG4:DG8_A A 4 ? A 8 ? 6 ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 A DG 11 1_555 A DG 2 1_555 A DG 10 1_555 2.206 3.290 0.761 -87.462 155.182 -150.118 -1.704 1.069 0.275 -77.618 -43.747 -179.518 1 AA_DG1DG2:DG10DG11_AA A 1 ? A 11 ? A 2 ? A 10 ? 1 A DG 2 1_555 A DG 10 1_555 A DG 3 1_555 A DG 9 1_555 -1.113 -3.127 -0.111 -133.335 97.988 174.548 -1.562 0.559 -0.155 48.999 66.674 179.311 2 AA_DG2DG3:DG9DG10_AA A 2 ? A 10 ? A 3 ? A 9 ? 1 A DG 3 1_555 A DG 9 1_555 A DG 4 1_555 A DG 8 1_555 2.431 2.570 1.699 -85.558 156.374 -37.131 -1.666 1.007 -0.490 -78.710 -43.066 -178.341 3 AA_DG3DG4:DG8DG9_AA A 3 ? A 9 ? A 4 ? A 8 ? # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type other _pdbx_initial_refinement_model.source_name ? _pdbx_initial_refinement_model.details 'GGGG(+U)TTGGGG chain A (P21)' # _atom_sites.entry_id 2AVH _atom_sites.fract_transf_matrix[1][1] 0.03341 _atom_sites.fract_transf_matrix[1][2] 0.00000 _atom_sites.fract_transf_matrix[1][3] 0.00000 _atom_sites.fract_transf_matrix[2][1] 0.00000 _atom_sites.fract_transf_matrix[2][2] 0.02695 _atom_sites.fract_transf_matrix[2][3] 0.00000 _atom_sites.fract_transf_matrix[3][1] 0.00000 _atom_sites.fract_transf_matrix[3][2] 0.00000 _atom_sites.fract_transf_matrix[3][3] 0.02291 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C K N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DG A 1 1 ? 1.627 28.302 2.266 1.00 24.50 ? 1 DG A "O5'" 1 ATOM 2 C "C5'" . DG A 1 1 ? 0.931 29.311 1.531 1.00 23.58 ? 1 DG A "C5'" 1 ATOM 3 C "C4'" . DG A 1 1 ? 1.818 30.492 1.152 1.00 22.53 ? 1 DG A "C4'" 1 ATOM 4 O "O4'" . DG A 1 1 ? 1.942 31.369 2.302 1.00 22.08 ? 1 DG A "O4'" 1 ATOM 5 C "C3'" . DG A 1 1 ? 3.245 30.160 0.706 1.00 22.65 ? 1 DG A "C3'" 1 ATOM 6 O "O3'" . DG A 1 1 ? 3.701 31.040 -0.338 1.00 23.50 ? 1 DG A "O3'" 1 ATOM 7 C "C2'" . DG A 1 1 ? 4.049 30.359 1.987 1.00 21.44 ? 1 DG A "C2'" 1 ATOM 8 C "C1'" . DG A 1 1 ? 3.308 31.525 2.629 1.00 19.95 ? 1 DG A "C1'" 1 ATOM 9 N N9 . DG A 1 1 ? 3.466 31.565 4.082 1.00 18.87 ? 1 DG A N9 1 ATOM 10 C C8 . DG A 1 1 ? 4.102 32.548 4.797 1.00 17.90 ? 1 DG A C8 1 ATOM 11 N N7 . DG A 1 1 ? 4.109 32.338 6.082 1.00 17.01 ? 1 DG A N7 1 ATOM 12 C C5 . DG A 1 1 ? 3.436 31.135 6.223 1.00 17.32 ? 1 DG A C5 1 ATOM 13 C C6 . DG A 1 1 ? 3.131 30.398 7.387 1.00 16.70 ? 1 DG A C6 1 ATOM 14 O O6 . DG A 1 1 ? 3.415 30.687 8.553 1.00 16.92 ? 1 DG A O6 1 ATOM 15 N N1 . DG A 1 1 ? 2.434 29.218 7.125 1.00 16.30 ? 1 DG A N1 1 ATOM 16 C C2 . DG A 1 1 ? 2.068 28.805 5.861 1.00 17.59 ? 1 DG A C2 1 ATOM 17 N N2 . DG A 1 1 ? 1.397 27.647 5.775 1.00 17.77 ? 1 DG A N2 1 ATOM 18 N N3 . DG A 1 1 ? 2.352 29.487 4.758 1.00 17.85 ? 1 DG A N3 1 ATOM 19 C C4 . DG A 1 1 ? 3.031 30.638 5.006 1.00 17.98 ? 1 DG A C4 1 ATOM 20 P P . DG A 1 2 ? 5.107 30.817 -1.080 1.00 23.89 ? 2 DG A P 1 ATOM 21 O OP1 . DG A 1 2 ? 5.073 31.635 -2.316 1.00 24.62 ? 2 DG A OP1 1 ATOM 22 O OP2 . DG A 1 2 ? 5.399 29.371 -1.150 1.00 23.60 ? 2 DG A OP2 1 ATOM 23 O "O5'" . DG A 1 2 ? 6.191 31.441 -0.082 1.00 22.60 ? 2 DG A "O5'" 1 ATOM 24 C "C5'" . DG A 1 2 ? 6.185 32.823 0.220 1.00 20.54 ? 2 DG A "C5'" 1 ATOM 25 C "C4'" . DG A 1 2 ? 7.108 33.125 1.388 1.00 19.18 ? 2 DG A "C4'" 1 ATOM 26 O "O4'" . DG A 1 2 ? 6.614 32.512 2.610 1.00 17.62 ? 2 DG A "O4'" 1 ATOM 27 C "C3'" . DG A 1 2 ? 8.554 32.668 1.233 1.00 18.64 ? 2 DG A "C3'" 1 ATOM 28 O "O3'" . DG A 1 2 ? 9.363 33.758 1.653 1.00 19.61 ? 2 DG A "O3'" 1 ATOM 29 C "C2'" . DG A 1 2 ? 8.638 31.472 2.182 1.00 17.67 ? 2 DG A "C2'" 1 ATOM 30 C "C1'" . DG A 1 2 ? 7.743 32.003 3.293 1.00 16.14 ? 2 DG A "C1'" 1 ATOM 31 N N9 . DG A 1 2 ? 7.295 31.048 4.303 1.00 14.57 ? 2 DG A N9 1 ATOM 32 C C8 . DG A 1 2 ? 6.763 29.795 4.104 1.00 14.39 ? 2 DG A C8 1 ATOM 33 N N7 . DG A 1 2 ? 6.445 29.183 5.210 1.00 14.27 ? 2 DG A N7 1 ATOM 34 C C5 . DG A 1 2 ? 6.788 30.091 6.198 1.00 13.16 ? 2 DG A C5 1 ATOM 35 C C6 . DG A 1 2 ? 6.678 29.995 7.598 1.00 13.32 ? 2 DG A C6 1 ATOM 36 O O6 . DG A 1 2 ? 6.242 29.046 8.266 1.00 13.06 ? 2 DG A O6 1 ATOM 37 N N1 . DG A 1 2 ? 7.142 31.124 8.265 1.00 12.84 ? 2 DG A N1 1 ATOM 38 C C2 . DG A 1 2 ? 7.650 32.238 7.647 1.00 13.06 ? 2 DG A C2 1 ATOM 39 N N2 . DG A 1 2 ? 8.041 33.233 8.452 1.00 13.45 ? 2 DG A N2 1 ATOM 40 N N3 . DG A 1 2 ? 7.760 32.351 6.325 1.00 13.58 ? 2 DG A N3 1 ATOM 41 C C4 . DG A 1 2 ? 7.316 31.244 5.668 1.00 14.29 ? 2 DG A C4 1 ATOM 42 P P . DG A 1 3 ? 10.925 33.860 1.354 1.00 21.01 ? 3 DG A P 1 ATOM 43 O OP1 . DG A 1 3 ? 11.319 35.243 1.682 1.00 21.66 ? 3 DG A OP1 1 ATOM 44 O OP2 . DG A 1 3 ? 11.193 33.345 -0.011 1.00 21.52 ? 3 DG A OP2 1 ATOM 45 O "O5'" . DG A 1 3 ? 11.586 32.853 2.402 1.00 20.22 ? 3 DG A "O5'" 1 ATOM 46 C "C5'" . DG A 1 3 ? 11.311 32.974 3.801 1.00 18.88 ? 3 DG A "C5'" 1 ATOM 47 C "C4'" . DG A 1 3 ? 12.354 33.821 4.507 1.00 17.95 ? 3 DG A "C4'" 1 ATOM 48 O "O4'" . DG A 1 3 ? 12.050 33.874 5.925 1.00 17.32 ? 3 DG A "O4'" 1 ATOM 49 C "C3'" . DG A 1 3 ? 13.782 33.308 4.417 1.00 18.31 ? 3 DG A "C3'" 1 ATOM 50 O "O3'" . DG A 1 3 ? 14.659 34.430 4.421 1.00 19.43 ? 3 DG A "O3'" 1 ATOM 51 C "C2'" . DG A 1 3 ? 13.915 32.451 5.673 1.00 17.26 ? 3 DG A "C2'" 1 ATOM 52 C "C1'" . DG A 1 3 ? 13.048 33.214 6.670 1.00 15.47 ? 3 DG A "C1'" 1 ATOM 53 N N9 . DG A 1 3 ? 12.373 32.383 7.667 1.00 13.82 ? 3 DG A N9 1 ATOM 54 C C8 . DG A 1 3 ? 12.402 32.587 9.031 1.00 13.07 ? 3 DG A C8 1 ATOM 55 N N7 . DG A 1 3 ? 11.716 31.710 9.699 1.00 12.32 ? 3 DG A N7 1 ATOM 56 C C5 . DG A 1 3 ? 11.204 30.874 8.718 1.00 12.54 ? 3 DG A C5 1 ATOM 57 C C6 . DG A 1 3 ? 10.381 29.737 8.838 1.00 12.30 ? 3 DG A C6 1 ATOM 58 O O6 . DG A 1 3 ? 9.930 29.230 9.879 1.00 12.35 ? 3 DG A O6 1 ATOM 59 N N1 . DG A 1 3 ? 10.064 29.141 7.618 1.00 12.29 ? 3 DG A N1 1 ATOM 60 C C2 . DG A 1 3 ? 10.502 29.605 6.401 1.00 12.76 ? 3 DG A C2 1 ATOM 61 N N2 . DG A 1 3 ? 10.093 28.908 5.327 1.00 13.67 ? 3 DG A N2 1 ATOM 62 N N3 . DG A 1 3 ? 11.272 30.684 6.268 1.00 12.92 ? 3 DG A N3 1 ATOM 63 C C4 . DG A 1 3 ? 11.590 31.267 7.459 1.00 13.27 ? 3 DG A C4 1 ATOM 64 P P . DG A 1 4 ? 16.240 34.266 4.272 1.00 20.00 ? 4 DG A P 1 ATOM 65 O OP1 . DG A 1 4 ? 16.802 35.552 3.800 1.00 21.32 ? 4 DG A OP1 1 ATOM 66 O OP2 . DG A 1 4 ? 16.542 33.022 3.544 1.00 21.18 ? 4 DG A OP2 1 ATOM 67 O "O5'" . DG A 1 4 ? 16.707 34.039 5.780 1.00 19.48 ? 4 DG A "O5'" 1 ATOM 68 C "C5'" . DG A 1 4 ? 16.564 35.043 6.767 1.00 18.61 ? 4 DG A "C5'" 1 ATOM 69 C "C4'" . DG A 1 4 ? 16.988 34.459 8.104 1.00 18.06 ? 4 DG A "C4'" 1 ATOM 70 O "O4'" . DG A 1 4 ? 16.022 33.462 8.513 1.00 17.18 ? 4 DG A "O4'" 1 ATOM 71 C "C3'" . DG A 1 4 ? 18.344 33.754 8.094 1.00 18.02 ? 4 DG A "C3'" 1 ATOM 72 O "O3'" . DG A 1 4 ? 19.106 34.206 9.190 1.00 19.92 ? 4 DG A "O3'" 1 ATOM 73 C "C2'" . DG A 1 4 ? 18.023 32.269 8.242 1.00 17.68 ? 4 DG A "C2'" 1 ATOM 74 C "C1'" . DG A 1 4 ? 16.712 32.339 9.014 1.00 15.81 ? 4 DG A "C1'" 1 ATOM 75 N N9 . DG A 1 4 ? 15.844 31.182 8.849 1.00 15.00 ? 4 DG A N9 1 ATOM 76 C C8 . DG A 1 4 ? 15.581 30.478 7.701 1.00 14.53 ? 4 DG A C8 1 ATOM 77 N N7 . DG A 1 4 ? 14.749 29.488 7.867 1.00 14.76 ? 4 DG A N7 1 ATOM 78 C C5 . DG A 1 4 ? 14.443 29.546 9.220 1.00 13.98 ? 4 DG A C5 1 ATOM 79 C C6 . DG A 1 4 ? 13.589 28.729 10.000 1.00 13.13 ? 4 DG A C6 1 ATOM 80 O O6 . DG A 1 4 ? 12.913 27.758 9.625 1.00 13.64 ? 4 DG A O6 1 ATOM 81 N N1 . DG A 1 4 ? 13.559 29.119 11.340 1.00 12.55 ? 4 DG A N1 1 ATOM 82 C C2 . DG A 1 4 ? 14.263 30.184 11.858 1.00 12.28 ? 4 DG A C2 1 ATOM 83 N N2 . DG A 1 4 ? 14.124 30.421 13.171 1.00 12.83 ? 4 DG A N2 1 ATOM 84 N N3 . DG A 1 4 ? 15.062 30.963 11.141 1.00 13.37 ? 4 DG A N3 1 ATOM 85 C C4 . DG A 1 4 ? 15.105 30.585 9.837 1.00 13.88 ? 4 DG A C4 1 ATOM 86 P P . DT A 1 5 ? 20.248 35.297 8.965 1.00 19.39 ? 5 DT A P 1 ATOM 87 O OP1 . DT A 1 5 ? 19.586 36.601 8.731 1.00 20.88 ? 5 DT A OP1 1 ATOM 88 O OP2 . DT A 1 5 ? 21.200 34.761 7.971 1.00 20.75 ? 5 DT A OP2 1 ATOM 89 O "O5'" . DT A 1 5 ? 20.942 35.352 10.402 1.00 19.84 ? 5 DT A "O5'" 1 ATOM 90 C "C5'" . DT A 1 5 ? 21.689 34.232 10.889 1.00 19.05 ? 5 DT A "C5'" 1 ATOM 91 C "C4'" . DT A 1 5 ? 21.232 33.818 12.281 1.00 18.45 ? 5 DT A "C4'" 1 ATOM 92 O "O4'" . DT A 1 5 ? 20.991 34.991 13.099 1.00 17.60 ? 5 DT A "O4'" 1 ATOM 93 C "C3'" . DT A 1 5 ? 19.947 33.003 12.351 1.00 18.52 ? 5 DT A "C3'" 1 ATOM 94 O "O3'" . DT A 1 5 ? 20.012 32.107 13.444 1.00 19.43 ? 5 DT A "O3'" 1 ATOM 95 C "C2'" . DT A 1 5 ? 18.884 34.049 12.650 1.00 17.80 ? 5 DT A "C2'" 1 ATOM 96 C "C1'" . DT A 1 5 ? 19.666 34.950 13.599 1.00 17.38 ? 5 DT A "C1'" 1 ATOM 97 N N1 . DT A 1 5 ? 19.131 36.335 13.668 1.00 16.35 ? 5 DT A N1 1 ATOM 98 C C2 . DT A 1 5 ? 18.558 36.778 14.844 1.00 16.10 ? 5 DT A C2 1 ATOM 99 O O2 . DT A 1 5 ? 18.464 36.103 15.856 1.00 16.38 ? 5 DT A O2 1 ATOM 100 N N3 . DT A 1 5 ? 18.099 38.072 14.799 1.00 16.11 ? 5 DT A N3 1 ATOM 101 C C4 . DT A 1 5 ? 18.151 38.936 13.713 1.00 16.50 ? 5 DT A C4 1 ATOM 102 O O4 . DT A 1 5 ? 17.705 40.077 13.781 1.00 17.99 ? 5 DT A O4 1 ATOM 103 C C5 . DT A 1 5 ? 18.761 38.400 12.514 1.00 16.29 ? 5 DT A C5 1 ATOM 104 C C7 . DT A 1 5 ? 18.890 39.222 11.265 1.00 15.97 ? 5 DT A C7 1 ATOM 105 C C6 . DT A 1 5 ? 19.215 37.142 12.550 1.00 16.61 ? 5 DT A C6 1 ATOM 106 P P . DT A 1 6 ? 20.394 30.574 13.239 1.00 19.91 ? 6 DT A P 1 ATOM 107 O OP1 . DT A 1 6 ? 20.270 29.944 14.570 1.00 20.12 ? 6 DT A OP1 1 ATOM 108 O OP2 . DT A 1 6 ? 21.677 30.503 12.507 1.00 21.55 ? 6 DT A OP2 1 ATOM 109 O "O5'" . DT A 1 6 ? 19.215 30.057 12.291 1.00 20.34 ? 6 DT A "O5'" 1 ATOM 110 C "C5'" . DT A 1 6 ? 17.910 29.871 12.816 1.00 20.92 ? 6 DT A "C5'" 1 ATOM 111 C "C4'" . DT A 1 6 ? 17.337 28.599 12.236 1.00 21.06 ? 6 DT A "C4'" 1 ATOM 112 O "O4'" . DT A 1 6 ? 17.215 28.771 10.808 1.00 22.50 ? 6 DT A "O4'" 1 ATOM 113 C "C3'" . DT A 1 6 ? 18.210 27.367 12.444 1.00 21.32 ? 6 DT A "C3'" 1 ATOM 114 O "O3'" . DT A 1 6 ? 17.444 26.368 13.071 1.00 19.31 ? 6 DT A "O3'" 1 ATOM 115 C "C2'" . DT A 1 6 ? 18.638 26.941 11.041 1.00 22.85 ? 6 DT A "C2'" 1 ATOM 116 C "C1'" . DT A 1 6 ? 17.559 27.562 10.171 1.00 25.11 ? 6 DT A "C1'" 1 ATOM 117 N N1 . DT A 1 6 ? 17.990 27.863 8.774 1.00 26.96 ? 6 DT A N1 1 ATOM 118 C C2 . DT A 1 6 ? 17.269 27.323 7.722 1.00 28.13 ? 6 DT A C2 1 ATOM 119 O O2 . DT A 1 6 ? 16.291 26.605 7.861 1.00 28.91 ? 6 DT A O2 1 ATOM 120 N N3 . DT A 1 6 ? 17.740 27.660 6.477 1.00 28.80 ? 6 DT A N3 1 ATOM 121 C C4 . DT A 1 6 ? 18.833 28.461 6.182 1.00 28.97 ? 6 DT A C4 1 ATOM 122 O O4 . DT A 1 6 ? 19.165 28.697 5.022 1.00 29.01 ? 6 DT A O4 1 ATOM 123 C C5 . DT A 1 6 ? 19.544 28.993 7.325 1.00 28.54 ? 6 DT A C5 1 ATOM 124 C C7 . DT A 1 6 ? 20.746 29.874 7.135 1.00 28.91 ? 6 DT A C7 1 ATOM 125 C C6 . DT A 1 6 ? 19.095 28.674 8.551 1.00 27.82 ? 6 DT A C6 1 ATOM 126 P P . DT A 1 7 ? 18.159 25.206 13.898 1.00 18.85 ? 7 DT A P 1 ATOM 127 O OP1 . DT A 1 7 ? 19.013 25.825 14.935 1.00 19.99 ? 7 DT A OP1 1 ATOM 128 O OP2 . DT A 1 7 ? 18.751 24.258 12.932 1.00 19.59 ? 7 DT A OP2 1 ATOM 129 O "O5'" . DT A 1 7 ? 16.907 24.533 14.618 1.00 18.14 ? 7 DT A "O5'" 1 ATOM 130 C "C5'" . DT A 1 7 ? 16.235 25.173 15.701 1.00 17.19 ? 7 DT A "C5'" 1 ATOM 131 C "C4'" . DT A 1 7 ? 15.187 24.225 16.264 1.00 17.27 ? 7 DT A "C4'" 1 ATOM 132 O "O4'" . DT A 1 7 ? 14.264 23.876 15.208 1.00 16.28 ? 7 DT A "O4'" 1 ATOM 133 C "C3'" . DT A 1 7 ? 15.681 22.882 16.797 1.00 17.36 ? 7 DT A "C3'" 1 ATOM 134 O "O3'" . DT A 1 7 ? 14.734 22.357 17.709 1.00 18.63 ? 7 DT A "O3'" 1 ATOM 135 C "C2'" . DT A 1 7 ? 15.682 22.014 15.549 1.00 16.73 ? 7 DT A "C2'" 1 ATOM 136 C "C1'" . DT A 1 7 ? 14.420 22.515 14.849 1.00 16.16 ? 7 DT A "C1'" 1 ATOM 137 N N1 . DT A 1 7 ? 14.469 22.407 13.363 1.00 15.44 ? 7 DT A N1 1 ATOM 138 C C2 . DT A 1 7 ? 14.449 21.147 12.803 1.00 15.58 ? 7 DT A C2 1 ATOM 139 O O2 . DT A 1 7 ? 14.405 20.130 13.467 1.00 16.45 ? 7 DT A O2 1 ATOM 140 N N3 . DT A 1 7 ? 14.485 21.132 11.432 1.00 16.69 ? 7 DT A N3 1 ATOM 141 C C4 . DT A 1 7 ? 14.540 22.228 10.589 1.00 16.54 ? 7 DT A C4 1 ATOM 142 O O4 . DT A 1 7 ? 14.569 22.100 9.368 1.00 18.71 ? 7 DT A O4 1 ATOM 143 C C5 . DT A 1 7 ? 14.553 23.521 11.240 1.00 16.33 ? 7 DT A C5 1 ATOM 144 C C7 . DT A 1 7 ? 14.614 24.789 10.439 1.00 16.92 ? 7 DT A C7 1 ATOM 145 C C6 . DT A 1 7 ? 14.516 23.547 12.579 1.00 15.29 ? 7 DT A C6 1 ATOM 146 P P . DG A 1 8 ? 15.011 22.335 19.281 1.00 19.62 ? 8 DG A P 1 ATOM 147 O OP1 . DG A 1 8 ? 16.435 22.007 19.503 1.00 20.00 ? 8 DG A OP1 1 ATOM 148 O OP2 . DG A 1 8 ? 13.945 21.502 19.888 1.00 20.59 ? 8 DG A OP2 1 ATOM 149 O "O5'" . DG A 1 8 ? 14.809 23.857 19.719 1.00 19.28 ? 8 DG A "O5'" 1 ATOM 150 C "C5'" . DG A 1 8 ? 13.522 24.348 19.984 1.00 17.96 ? 8 DG A "C5'" 1 ATOM 151 C "C4'" . DG A 1 8 ? 13.596 25.838 20.233 1.00 16.03 ? 8 DG A "C4'" 1 ATOM 152 O "O4'" . DG A 1 8 ? 14.033 26.516 19.026 1.00 15.17 ? 8 DG A "O4'" 1 ATOM 153 C "C3'" . DG A 1 8 ? 12.266 26.459 20.629 1.00 16.13 ? 8 DG A "C3'" 1 ATOM 154 O "O3'" . DG A 1 8 ? 12.502 27.479 21.586 1.00 16.79 ? 8 DG A "O3'" 1 ATOM 155 C "C2'" . DG A 1 8 ? 11.757 27.029 19.313 1.00 14.87 ? 8 DG A "C2'" 1 ATOM 156 C "C1'" . DG A 1 8 ? 13.061 27.479 18.668 1.00 13.83 ? 8 DG A "C1'" 1 ATOM 157 N N9 . DG A 1 8 ? 13.007 27.593 17.209 1.00 12.41 ? 8 DG A N9 1 ATOM 158 C C8 . DG A 1 8 ? 13.455 28.666 16.482 1.00 11.10 ? 8 DG A C8 1 ATOM 159 N N7 . DG A 1 8 ? 13.301 28.528 15.197 1.00 10.79 ? 8 DG A N7 1 ATOM 160 C C5 . DG A 1 8 ? 12.717 27.277 15.062 1.00 10.96 ? 8 DG A C5 1 ATOM 161 C C6 . DG A 1 8 ? 12.316 26.582 13.896 1.00 10.98 ? 8 DG A C6 1 ATOM 162 O O6 . DG A 1 8 ? 12.404 26.962 12.718 1.00 11.66 ? 8 DG A O6 1 ATOM 163 N N1 . DG A 1 8 ? 11.759 25.331 14.176 1.00 10.95 ? 8 DG A N1 1 ATOM 164 C C2 . DG A 1 8 ? 11.618 24.817 15.448 1.00 10.72 ? 8 DG A C2 1 ATOM 165 N N2 . DG A 1 8 ? 11.071 23.598 15.552 1.00 10.77 ? 8 DG A N2 1 ATOM 166 N N3 . DG A 1 8 ? 11.987 25.461 16.548 1.00 10.79 ? 8 DG A N3 1 ATOM 167 C C4 . DG A 1 8 ? 12.526 26.683 16.291 1.00 11.22 ? 8 DG A C4 1 ATOM 168 P P . DG A 1 9 ? 11.299 28.314 22.228 1.00 17.71 ? 9 DG A P 1 ATOM 169 O OP1 . DG A 1 9 ? 11.820 28.912 23.480 1.00 19.58 ? 9 DG A OP1 1 ATOM 170 O OP2 . DG A 1 9 ? 10.102 27.456 22.282 1.00 17.09 ? 9 DG A OP2 1 ATOM 171 O "O5'" . DG A 1 9 ? 11.029 29.476 21.161 1.00 16.91 ? 9 DG A "O5'" 1 ATOM 172 C "C5'" . DG A 1 9 ? 12.050 30.398 20.830 1.00 16.29 ? 9 DG A "C5'" 1 ATOM 173 C "C4'" . DG A 1 9 ? 11.674 31.206 19.604 1.00 15.65 ? 9 DG A "C4'" 1 ATOM 174 O "O4'" . DG A 1 9 ? 11.608 30.358 18.425 1.00 14.32 ? 9 DG A "O4'" 1 ATOM 175 C "C3'" . DG A 1 9 ? 10.342 31.942 19.688 1.00 15.84 ? 9 DG A "C3'" 1 ATOM 176 O "O3'" . DG A 1 9 ? 10.600 33.250 19.218 1.00 16.74 ? 9 DG A "O3'" 1 ATOM 177 C "C2'" . DG A 1 9 ? 9.458 31.156 18.727 1.00 14.66 ? 9 DG A "C2'" 1 ATOM 178 C "C1'" . DG A 1 9 ? 10.493 30.794 17.674 1.00 12.84 ? 9 DG A "C1'" 1 ATOM 179 N N9 . DG A 1 9 ? 10.056 29.789 16.710 1.00 10.39 ? 9 DG A N9 1 ATOM 180 C C8 . DG A 1 9 ? 9.475 28.561 16.947 1.00 10.10 ? 9 DG A C8 1 ATOM 181 N N7 . DG A 1 9 ? 9.195 27.904 15.856 1.00 9.56 ? 9 DG A N7 1 ATOM 182 C C5 . DG A 1 9 ? 9.624 28.749 14.844 1.00 9.80 ? 9 DG A C5 1 ATOM 183 C C6 . DG A 1 9 ? 9.589 28.594 13.442 1.00 10.16 ? 9 DG A C6 1 ATOM 184 O O6 . DG A 1 9 ? 9.152 27.636 12.792 1.00 10.90 ? 9 DG A O6 1 ATOM 185 N N1 . DG A 1 9 ? 10.118 29.681 12.747 1.00 10.01 ? 9 DG A N1 1 ATOM 186 C C2 . DG A 1 9 ? 10.624 30.809 13.348 1.00 9.32 ? 9 DG A C2 1 ATOM 187 N N2 . DG A 1 9 ? 11.091 31.766 12.541 1.00 10.16 ? 9 DG A N2 1 ATOM 188 N N3 . DG A 1 9 ? 10.666 30.975 14.669 1.00 9.80 ? 9 DG A N3 1 ATOM 189 C C4 . DG A 1 9 ? 10.156 29.912 15.344 1.00 9.83 ? 9 DG A C4 1 ATOM 190 P P . DG A 1 10 ? 9.691 34.534 19.512 1.00 19.17 ? 10 DG A P 1 ATOM 191 O OP1 . DG A 1 10 ? 10.529 35.705 19.179 1.00 20.24 ? 10 DG A OP1 1 ATOM 192 O OP2 . DG A 1 10 ? 9.096 34.432 20.861 1.00 19.60 ? 10 DG A OP2 1 ATOM 193 O "O5'" . DG A 1 10 ? 8.533 34.428 18.421 1.00 17.62 ? 10 DG A "O5'" 1 ATOM 194 C "C5'" . DG A 1 10 ? 8.885 34.382 17.035 1.00 15.33 ? 10 DG A "C5'" 1 ATOM 195 C "C4'" . DG A 1 10 ? 8.674 35.713 16.340 1.00 13.65 ? 10 DG A "C4'" 1 ATOM 196 O "O4'" . DG A 1 10 ? 8.853 35.510 14.916 1.00 13.28 ? 10 DG A "O4'" 1 ATOM 197 C "C3'" . DG A 1 10 ? 7.287 36.325 16.493 1.00 14.17 ? 10 DG A "C3'" 1 ATOM 198 O "O3'" . DG A 1 10 ? 7.370 37.749 16.375 1.00 15.04 ? 10 DG A "O3'" 1 ATOM 199 C "C2'" . DG A 1 10 ? 6.535 35.702 15.328 1.00 13.07 ? 10 DG A "C2'" 1 ATOM 200 C "C1'" . DG A 1 10 ? 7.617 35.679 14.252 1.00 12.11 ? 10 DG A "C1'" 1 ATOM 201 N N9 . DG A 1 10 ? 7.478 34.598 13.281 1.00 10.95 ? 10 DG A N9 1 ATOM 202 C C8 . DG A 1 10 ? 7.527 34.734 11.910 1.00 10.49 ? 10 DG A C8 1 ATOM 203 N N7 . DG A 1 10 ? 7.381 33.612 11.268 1.00 10.46 ? 10 DG A N7 1 ATOM 204 C C5 . DG A 1 10 ? 7.227 32.677 12.283 1.00 9.81 ? 10 DG A C5 1 ATOM 205 C C6 . DG A 1 10 ? 7.026 31.286 12.199 1.00 10.03 ? 10 DG A C6 1 ATOM 206 O O6 . DG A 1 10 ? 6.947 30.598 11.171 1.00 10.59 ? 10 DG A O6 1 ATOM 207 N N1 . DG A 1 10 ? 6.917 30.670 13.439 1.00 9.40 ? 10 DG A N1 1 ATOM 208 C C2 . DG A 1 10 ? 6.989 31.337 14.639 1.00 10.16 ? 10 DG A C2 1 ATOM 209 N N2 . DG A 1 10 ? 6.860 30.602 15.748 1.00 9.96 ? 10 DG A N2 1 ATOM 210 N N3 . DG A 1 10 ? 7.171 32.647 14.734 1.00 10.14 ? 10 DG A N3 1 ATOM 211 C C4 . DG A 1 10 ? 7.290 33.253 13.525 1.00 10.17 ? 10 DG A C4 1 ATOM 212 P P . DG A 1 11 ? 6.119 38.695 16.717 1.00 16.06 ? 11 DG A P 1 ATOM 213 O OP1 . DG A 1 11 ? 6.681 40.028 17.041 1.00 17.97 ? 11 DG A OP1 1 ATOM 214 O OP2 . DG A 1 11 ? 5.234 38.004 17.673 1.00 16.77 ? 11 DG A OP2 1 ATOM 215 O "O5'" . DG A 1 11 ? 5.329 38.782 15.333 1.00 15.40 ? 11 DG A "O5'" 1 ATOM 216 C "C5'" . DG A 1 11 ? 5.817 39.548 14.246 1.00 14.77 ? 11 DG A "C5'" 1 ATOM 217 C "C4'" . DG A 1 11 ? 4.938 39.359 13.027 1.00 14.20 ? 11 DG A "C4'" 1 ATOM 218 O "O4'" . DG A 1 11 ? 5.065 37.986 12.577 1.00 14.54 ? 11 DG A "O4'" 1 ATOM 219 C "C3'" . DG A 1 11 ? 3.445 39.605 13.266 1.00 14.38 ? 11 DG A "C3'" 1 ATOM 220 O "O3'" . DG A 1 11 ? 2.894 40.413 12.237 1.00 15.40 ? 11 DG A "O3'" 1 ATOM 221 C "C2'" . DG A 1 11 ? 2.836 38.209 13.264 1.00 14.49 ? 11 DG A "C2'" 1 ATOM 222 C "C1'" . DG A 1 11 ? 3.778 37.479 12.314 1.00 13.56 ? 11 DG A "C1'" 1 ATOM 223 N N9 . DG A 1 11 ? 3.794 36.031 12.486 1.00 13.12 ? 11 DG A N9 1 ATOM 224 C C8 . DG A 1 11 ? 3.680 35.322 13.659 1.00 13.13 ? 11 DG A C8 1 ATOM 225 N N7 . DG A 1 11 ? 3.727 34.031 13.484 1.00 11.31 ? 11 DG A N7 1 ATOM 226 C C5 . DG A 1 11 ? 3.875 33.887 12.112 1.00 12.14 ? 11 DG A C5 1 ATOM 227 C C6 . DG A 1 11 ? 3.983 32.723 11.322 1.00 11.66 ? 11 DG A C6 1 ATOM 228 O O6 . DG A 1 11 ? 3.962 31.547 11.699 1.00 12.05 ? 11 DG A O6 1 ATOM 229 N N1 . DG A 1 11 ? 4.122 32.994 9.964 1.00 12.69 ? 11 DG A N1 1 ATOM 230 C C2 . DG A 1 11 ? 4.160 34.257 9.427 1.00 12.83 ? 11 DG A C2 1 ATOM 231 N N2 . DG A 1 11 ? 4.304 34.329 8.096 1.00 14.21 ? 11 DG A N2 1 ATOM 232 N N3 . DG A 1 11 ? 4.059 35.361 10.154 1.00 13.61 ? 11 DG A N3 1 ATOM 233 C C4 . DG A 1 11 ? 3.923 35.106 11.482 1.00 12.87 ? 11 DG A C4 1 HETATM 234 K K . K B 2 . ? 10.666 26.527 10.570 1.00 11.91 ? 12 K A K 1 HETATM 235 K K . K C 2 . ? 7.662 27.917 10.487 0.50 7.83 ? 13 K A K 1 HETATM 236 K K . K D 2 . ? 4.089 35.898 2.370 1.00 36.39 ? 14 K A K 1 HETATM 237 K K . K E 2 . ? 5.582 32.127 18.845 1.00 24.18 ? 15 K A K 1 HETATM 238 O O . HOH F 3 . ? 20.962 23.948 11.396 1.00 19.77 ? 16 HOH A O 1 HETATM 239 O O . HOH F 3 . ? 24.732 32.139 9.012 1.00 31.56 ? 17 HOH A O 1 HETATM 240 O O . HOH F 3 . ? 3.761 26.484 2.350 1.00 22.99 ? 18 HOH A O 1 HETATM 241 O O . HOH F 3 . ? 16.112 32.404 0.982 1.00 27.48 ? 19 HOH A O 1 HETATM 242 O O . HOH F 3 . ? 14.963 37.102 2.875 0.50 25.88 ? 20 HOH A O 1 HETATM 243 O O . HOH F 3 . ? 8.513 27.020 19.975 1.00 23.04 ? 21 HOH A O 1 HETATM 244 O O . HOH F 3 . ? 16.678 26.972 18.637 1.00 24.73 ? 22 HOH A O 1 HETATM 245 O O . HOH F 3 . ? 16.900 41.868 16.059 1.00 19.62 ? 23 HOH A O 1 HETATM 246 O O . HOH F 3 . ? 14.569 30.113 23.493 1.00 28.60 ? 24 HOH A O 1 HETATM 247 O O . HOH F 3 . ? 11.214 21.687 18.260 1.00 24.91 ? 25 HOH A O 1 HETATM 248 O O . HOH F 3 . ? 14.707 33.860 11.662 1.00 24.04 ? 26 HOH A O 1 HETATM 249 O O . HOH F 3 . ? 14.627 18.486 10.589 0.50 18.08 ? 27 HOH A O 1 HETATM 250 O O . HOH F 3 . ? 4.810 42.775 19.025 1.00 29.24 ? 28 HOH A O 1 HETATM 251 O O . HOH F 3 . ? 18.624 32.355 16.252 1.00 38.09 ? 29 HOH A O 1 HETATM 252 O O . HOH F 3 . ? 9.391 40.205 17.278 1.00 40.10 ? 30 HOH A O 1 HETATM 253 O O . HOH F 3 . ? 10.182 38.322 18.839 1.00 33.21 ? 31 HOH A O 1 HETATM 254 O O . HOH F 3 . ? 17.252 39.245 17.254 1.00 24.66 ? 32 HOH A O 1 HETATM 255 O O . HOH F 3 . ? 15.340 35.815 16.719 1.00 38.95 ? 33 HOH A O 1 HETATM 256 O O . HOH F 3 . ? 15.683 35.959 13.742 1.00 45.31 ? 34 HOH A O 1 HETATM 257 O O . HOH F 3 . ? 16.359 37.978 9.101 1.00 32.45 ? 35 HOH A O 1 HETATM 258 O O . HOH F 3 . ? 20.214 38.817 7.407 1.00 28.00 ? 36 HOH A O 1 HETATM 259 O O . HOH F 3 . ? 6.139 36.755 6.606 1.00 35.35 ? 37 HOH A O 1 HETATM 260 O O . HOH F 3 . ? 6.083 37.621 9.115 1.00 32.09 ? 38 HOH A O 1 HETATM 261 O O . HOH F 3 . ? 5.176 39.735 21.134 1.00 28.03 ? 39 HOH A O 1 HETATM 262 O O . HOH F 3 . ? 6.856 41.171 19.535 1.00 31.34 ? 40 HOH A O 1 HETATM 263 O O . HOH F 3 . ? 8.323 36.160 22.819 1.00 29.54 ? 41 HOH A O 1 HETATM 264 O O . HOH F 3 . ? 10.570 31.006 24.732 1.00 34.94 ? 42 HOH A O 1 HETATM 265 O O . HOH F 3 . ? 3.270 36.385 16.707 1.00 26.18 ? 43 HOH A O 1 HETATM 266 O O . HOH F 3 . ? 20.284 32.564 4.645 1.00 44.41 ? 44 HOH A O 1 HETATM 267 O O . HOH F 3 . ? 22.705 32.668 7.265 1.00 39.84 ? 45 HOH A O 1 HETATM 268 O O . HOH F 3 . ? 16.765 30.653 4.718 1.00 32.67 ? 46 HOH A O 1 HETATM 269 O O . HOH F 3 . ? 13.255 36.373 1.090 1.00 27.56 ? 47 HOH A O 1 HETATM 270 O O . HOH F 3 . ? 14.639 34.861 -0.454 0.50 25.35 ? 48 HOH A O 1 HETATM 271 O O . HOH F 3 . ? 16.181 31.785 15.055 1.00 32.34 ? 49 HOH A O 1 HETATM 272 O O . HOH F 3 . ? 15.539 31.495 17.704 1.00 47.31 ? 50 HOH A O 1 HETATM 273 O O . HOH F 3 . ? 17.566 24.249 20.294 1.00 33.50 ? 51 HOH A O 1 HETATM 274 O O . HOH F 3 . ? 12.125 21.769 21.780 1.00 40.42 ? 52 HOH A O 1 HETATM 275 O O . HOH F 3 . ? 19.302 27.917 16.464 1.00 34.09 ? 53 HOH A O 1 HETATM 276 O O . HOH F 3 . ? 4.925 42.049 16.542 1.00 38.46 ? 54 HOH A O 1 HETATM 277 O O . HOH F 3 . ? 5.862 36.896 0.477 0.50 36.41 ? 55 HOH A O 1 HETATM 278 O O . HOH F 3 . ? 8.781 34.690 -1.970 1.00 35.50 ? 56 HOH A O 1 HETATM 279 O O . HOH F 3 . ? 23.474 28.940 13.702 1.00 36.10 ? 57 HOH A O 1 HETATM 280 O O . HOH F 3 . ? 19.682 36.696 4.212 1.00 37.41 ? 58 HOH A O 1 HETATM 281 O O . HOH F 3 . ? 16.975 28.224 3.496 1.00 42.59 ? 59 HOH A O 1 HETATM 282 O O . HOH F 3 . ? 15.238 40.556 14.340 0.50 34.86 ? 60 HOH A O 1 HETATM 283 O O . HOH F 3 . ? 7.707 35.045 5.308 1.00 34.43 ? 61 HOH A O 1 HETATM 284 O O . HOH F 3 . ? 20.870 26.901 3.991 1.00 38.31 ? 62 HOH A O 1 HETATM 285 O O . HOH F 3 . ? 0.856 35.027 5.429 1.00 39.84 ? 63 HOH A O 1 HETATM 286 O O . HOH F 3 . ? 15.224 37.445 11.436 0.50 26.41 ? 64 HOH A O 1 HETATM 287 O O . HOH F 3 . ? 0.466 25.959 2.824 1.00 40.73 ? 65 HOH A O 1 HETATM 288 O O . HOH F 3 . ? 17.333 23.638 7.696 1.00 46.54 ? 66 HOH A O 1 HETATM 289 O O . HOH F 3 . ? 14.518 18.739 15.870 0.50 18.59 ? 67 HOH A O 1 HETATM 290 O O . HOH F 3 . ? 15.518 18.468 19.845 0.50 29.28 ? 68 HOH A O 1 HETATM 291 O O . HOH F 3 . ? 21.957 28.305 18.136 0.50 25.07 ? 69 HOH A O 1 #