0.015990 0.009232 0.000000 0.000000 0.018464 0.000000 0.000000 0.000000 0.012217 0.00000 0.00000 0.00000 Heaslet, H. Kutilek, V. Morris, G.M. Lin, Y.-C. Elder, J.H. Torbett, B.E. Stout, C.D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 62.539 62.539 81.852 C50 H64 N6 O10 909.077 benzyl [(1S,4S,7S,8R,9R,10S,13S,16S)-7,10-dibenzyl-8,9-dihydroxy-1,16-dimethyl-4,13-bis(1-methylethyl)-2,5,12,15,18-pentaoxo-20-phenyl-19-oxa-3,6,11,14,17-pentaazaicos-1-yl]carbamate TL-3, C2 symmetric inhibitor peptide-like C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N C N 2 N O N 3 N O N 4 N C Y 5 N C Y 6 N C Y 7 N C Y 8 N C Y 9 N C Y 10 N C N 11 N N N 12 S C N 13 N C N 14 N O N 15 N C N 16 N N N 17 S C N 18 N C N 19 N O N 20 N C N 21 N C N 22 N C N 23 R C N 24 N O N 25 S C N 26 N N N 27 N C Y 28 N C Y 29 N C Y 30 N C Y 31 N C Y 32 N C Y 33 N C N 34 N N N 35 S C N 36 R C N 37 N O N 38 N C Y 39 N C Y 40 N C Y 41 N C Y 42 N C Y 43 N C Y 44 N C N 45 N N N 46 S C N 47 N C N 48 N O N 49 N C N 50 N C N 51 N C N 52 N N N 53 S C N 54 N C N 55 N O N 56 N C N 57 N C N 58 N O N 59 N O N 60 N C Y 61 N C Y 62 N C Y 63 N C Y 64 N C Y 65 N C Y 66 N C N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N N N 132 S C N 133 N C N 134 N O N 135 N C N 136 N O N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N N N 145 S C N 146 N C N 147 N O N 148 N C N 149 N C N 150 N C N 151 N N N 152 N C N 153 N N N 154 N N N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N N N 172 S C N 173 N C N 174 N O N 175 N C N 176 N C N 177 N O N 178 N N N 179 N O N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N N N 189 S C N 190 N C N 191 N O N 192 N C N 193 N C N 194 N O N 195 N O N 196 N O N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N N N 205 R C N 206 N C N 207 N O N 208 N C N 209 N S N 210 N O N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N N N 219 S C N 220 N C N 221 N O N 222 N C N 223 N C N 224 N C N 225 N O N 226 N N N 227 N O N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N N N 239 S C N 240 N C N 241 N O N 242 N C N 243 N C N 244 N C N 245 N O N 246 N O N 247 N O N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N N N 258 N C N 259 N C N 260 N O N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N N N 268 S C N 269 N C N 270 N O N 271 N C Y 272 N C Y 273 N N Y 274 N C Y 275 N C Y 276 N N N 277 N O N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N O N 289 N H N 290 N H N 291 N N N 292 S C N 293 N C N 294 N O N 295 S C N 296 N C N 297 N C N 298 N C N 299 N O N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N N N 314 S C N 315 N C N 316 N O N 317 N C N 318 N C N 319 N C N 320 N C N 321 N O N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N N N 336 S C N 337 N C N 338 N O N 339 N C N 340 N C N 341 N C N 342 N C N 343 N N N 344 N O N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N N N 361 S C N 362 N C N 363 N O N 364 N C N 365 N C N 366 N S N 367 N C N 368 N O N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N N N 381 S C N 382 N C N 383 N O N 384 N C Y 385 N C Y 386 N C Y 387 N C Y 388 N C Y 389 N C Y 390 N C N 391 N O N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N N N 404 S C N 405 N C N 406 N O N 407 N C N 408 N C N 409 N C N 410 N O N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N N N 421 S C N 422 N C N 423 N O N 424 N C N 425 N O N 426 N O N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N N N 435 S C N 436 N C N 437 N O N 438 R C N 439 N O N 440 N C N 441 N O N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N N N 452 S C N 453 N C N 454 N O N 455 N C Y 456 N C Y 457 N C Y 458 N C Y 459 N N Y 460 N C Y 461 N C Y 462 N C Y 463 N C Y 464 N C N 465 N O N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 476 N H N 477 N H N 478 N N N 479 S C N 480 N C N 481 N O N 482 N C Y 483 N C Y 484 N C Y 485 N C Y 486 N C Y 487 N C Y 488 N C N 489 N O N 490 N O N 491 N H N 492 N H N 493 N H N 494 N H N 495 N H N 496 N H N 497 N H N 498 N H N 499 N H N 500 N H N 501 N H N 502 N N N 503 S C N 504 N C N 505 N O N 506 N C N 507 N C N 508 N C N 509 N O N 510 N H N 511 N H N 512 N H N 513 N H N 514 N H N 515 N H N 516 N H N 517 N H N 518 N H N 519 N H N 520 N H N 1 N doub N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing Y 8 N doub Y 9 N sing Y 10 N sing N 11 N sing Y 12 N doub N 13 N sing Y 14 N sing N 15 N sing Y 16 N doub N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N doub N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N doub N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing Y 57 N doub Y 58 N sing Y 59 N sing N 60 N sing Y 61 N doub N 62 N sing Y 63 N doub N 64 N sing Y 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing Y 80 N doub Y 81 N sing Y 82 N sing N 83 N sing Y 84 N doub N 85 N sing Y 86 N doub N 87 N sing Y 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N doub N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing Y 123 N doub Y 124 N sing Y 125 N sing N 126 N sing Y 127 N doub N 128 N sing Y 129 N sing N 130 N sing Y 131 N doub N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N doub N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N doub N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N doub N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N doub N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N doub N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N doub N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N doub N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N doub N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N doub N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N doub N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N doub N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N doub N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N doub N 269 N sing N 270 N sing N 271 N sing N 272 N sing Y 273 N sing Y 274 N doub Y 275 N doub N 276 N sing Y 277 N sing N 278 N sing Y 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N doub N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N doub N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N doub N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N doub N 377 N sing N 378 N sing N 379 N sing N 380 N sing Y 381 N doub Y 382 N sing Y 383 N sing N 384 N sing Y 385 N doub N 386 N sing Y 387 N doub N 388 N sing Y 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N doub N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N doub N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N doub N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N doub N 446 N sing N 447 N sing N 448 N sing N 449 N sing Y 450 N doub Y 451 N sing Y 452 N sing N 453 N sing Y 454 N doub Y 455 N sing Y 456 N sing N 457 N sing Y 458 N sing Y 459 N doub N 460 N sing Y 461 N doub N 462 N sing Y 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N doub N 474 N sing N 475 N sing N 476 N sing N 477 N sing Y 478 N doub Y 479 N sing Y 480 N sing N 481 N sing Y 482 N doub N 483 N sing Y 484 N doub N 485 N sing Y 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing N 497 N doub N 498 N sing N 499 N sing N 500 N sing N 501 N sing N 502 N sing N 503 N sing N 504 N sing N 505 N sing N 506 N sing N 507 N sing N 508 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 356 967 981 10.1016/j.jmb.2005.11.094 16403521 Structural Insights into the Mechanisms of Drug Resistance in HIV-1 Protease NL4-3 2006 10.2210/pdb2azb/pdb pdb_00002azb 100.0 1 MIRRORS CCD 2005-04-21 MARMOSAIC 325 mm CCD DOUBLE CRYSTAL MONOCHROMATOR SINGLE WAVELENGTH M x-ray 1 0.979 1.0 BL9-2 SSRL 0.979 SYNCHROTRON SSRL BEAMLINE BL9-2 10751.725 PROTEASE RETROPEPSIN 3.4.23.16 M46I,F53L,V82A 1 man polymer 909.077 benzyl [(1S,4S,7S,8R,9R,10S,13S,16S)-7,10-dibenzyl-8,9-dihydroxy-1,16-dimethyl-4,13-bis(1-methylethyl)-2,5,12,15,18-pentaoxo-20-phenyl-19-oxa-3,6,11,14,17-pentaazaicos-1-yl]carbamate Half of TL-3 molecule in the asymmetric unit 1 syn non-polymer 18.015 water 83 nat water HIV-1 PROTEASE E.C.3.4.23.16 no no PQITLWKRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKIIGGIGGLIKVRQYDQILIEICGHKAIGTVLVGPT PANIIGRNLLTQIGCTLNF PQITLWKRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKIIGGIGGLIKVRQYDQILIEICGHKAIGTVLVGPT PANIIGRNLLTQIGCTLNF A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Lentivirus R8 Escherichia sample Protease NL4-3 pol 11676 Human immunodeficiency virus 1 562 Escherichia coli BL21.DE3, pLys S plasmid pET 21a+ 1 2.10 41.00 8.50 PEG 4000, magensium chloride, Tris HCl, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 281.16K, pH 8.50 281.16 pdbx_unobs_or_zero_occ_atoms software audit_author citation_author database_2 pdbx_unobs_or_zero_occ_atoms struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond pdbx_initial_refinement_model repository Initial release Version format compliance Atomic model Database references Derived calculations Non-polymer description Structure summary Version format compliance Other Advisory Refinement description Database references Structure summary Advisory Database references Derived calculations Data collection Refinement description 1 0 2006-02-28 1 1 2008-05-01 1 2 2011-07-13 1 3 2013-02-27 1 4 2017-10-11 1 5 2018-01-24 1 6 2021-10-20 1 7 2023-08-23 _audit_author.name _citation_author.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Wild-type protease NL4-3 in complex with same inhibitor, TL-3 1X protease NL4-3 in complex with the same inhibitor, TL-3 6X protease NL4-3 in complex with the same inhibitor, TL-3 N RCSB Y RCSB 2005-09-09 REL REL 3TL benzyl [(1S,4S,7S,8R,9R,10S,13S,16S)-7,10-dibenzyl-8,9-dihydroxy-1,16-dimethyl-4,13-bis(1-methylethyl)-2,5,12,15,18-pentaoxo-20-phenyl-19-oxa-3,6,11,14,17-pentaazaicos-1-yl]carbamate HOH water THE INHIBITOR IS A C2 SYMMETRIC HIV PROTEASE. THE STRUCTURE WAS REFINED WITH HALF OF THE C2 SYMMETRIC LIGAND 3TL IN THE ASYMMETRIC UNIT - AS A RESULT A CLOSE CONTACT SHOWS UP IN BETWEEN THE CARBON ATOMS CLOSEST TO THE C2 SYMMETRY AXIS. 2AZ8 PDB ENTRY 2AZ8 PDB experimental model Inhibitor N-[(benzyloxy)carbonyl]-L-alanyl-N-[(1R)-1-benzyl-2-oxoethyl]-L-valinamide Peptide-like CBZ 200 2 3TL 3TL 200 A HOH 1 3 HOH HOH 100 A HOH 2 3 HOH HOH 101 A HOH 3 3 HOH HOH 102 A HOH 4 3 HOH HOH 103 A HOH 5 3 HOH HOH 104 A HOH 6 3 HOH HOH 105 A HOH 7 3 HOH HOH 106 A HOH 8 3 HOH HOH 107 A HOH 9 3 HOH HOH 108 A HOH 10 3 HOH HOH 109 A HOH 11 3 HOH HOH 110 A HOH 12 3 HOH HOH 111 A HOH 13 3 HOH HOH 112 A HOH 14 3 HOH HOH 113 A HOH 15 3 HOH HOH 114 A HOH 16 3 HOH HOH 115 A HOH 17 3 HOH HOH 116 A HOH 18 3 HOH HOH 117 A HOH 19 3 HOH HOH 118 A HOH 20 3 HOH HOH 119 A HOH 21 3 HOH HOH 120 A HOH 22 3 HOH HOH 121 A HOH 23 3 HOH HOH 122 A HOH 24 3 HOH HOH 123 A HOH 25 3 HOH HOH 124 A HOH 26 3 HOH HOH 125 A HOH 27 3 HOH HOH 126 A HOH 28 3 HOH HOH 127 A HOH 29 3 HOH HOH 128 A HOH 30 3 HOH HOH 129 A HOH 31 3 HOH HOH 130 A HOH 32 3 HOH HOH 131 A HOH 33 3 HOH HOH 132 A HOH 34 3 HOH HOH 133 A HOH 35 3 HOH HOH 134 A HOH 36 3 HOH HOH 135 A HOH 37 3 HOH HOH 136 A HOH 38 3 HOH HOH 137 A HOH 39 3 HOH HOH 138 A HOH 40 3 HOH HOH 139 A HOH 41 3 HOH HOH 140 A HOH 42 3 HOH HOH 141 A HOH 43 3 HOH HOH 142 A HOH 44 3 HOH HOH 143 A HOH 45 3 HOH HOH 144 A HOH 46 3 HOH HOH 145 A HOH 47 3 HOH HOH 146 A HOH 48 3 HOH HOH 147 A HOH 49 3 HOH HOH 148 A HOH 50 3 HOH HOH 149 A HOH 51 3 HOH HOH 150 A HOH 52 3 HOH HOH 151 A HOH 53 3 HOH HOH 152 A HOH 55 3 HOH HOH 153 A HOH 56 3 HOH HOH 154 A HOH 57 3 HOH HOH 155 A HOH 58 3 HOH HOH 156 A HOH 59 3 HOH HOH 157 A HOH 60 3 HOH HOH 158 A HOH 61 3 HOH HOH 159 A HOH 62 3 HOH HOH 160 A HOH 63 3 HOH HOH 161 A HOH 64 3 HOH HOH 162 A HOH 65 3 HOH HOH 163 A HOH 66 3 HOH HOH 164 A HOH 67 3 HOH HOH 165 A HOH 68 3 HOH HOH 166 A HOH 69 3 HOH HOH 167 A HOH 70 3 HOH HOH 168 A HOH 71 3 HOH HOH 169 A HOH 72 3 HOH HOH 170 A HOH 73 3 HOH HOH 171 A HOH 74 3 HOH HOH 172 A HOH 75 3 HOH HOH 173 A HOH 76 3 HOH HOH 174 A HOH 77 3 HOH HOH 175 A HOH 78 3 HOH HOH 176 A HOH 79 3 HOH HOH 177 A HOH 81 3 HOH HOH 178 A HOH 82 3 HOH HOH 179 A HOH 83 3 HOH HOH 180 A HOH 84 3 HOH HOH 181 A HOH 85 3 HOH HOH 182 A 0.394 0.594 3.000 3.000 24.370 24.370 PRO 1 n 1 PRO 1 A GLN 2 n 2 GLN 2 A ILE 3 n 3 ILE 3 A THR 4 n 4 THR 4 A LEU 5 n 5 LEU 5 A TRP 6 n 6 TRP 6 A LYS 7 n 7 LYS 7 A ARG 8 n 8 ARG 8 A PRO 9 n 9 PRO 9 A LEU 10 n 10 LEU 10 A VAL 11 n 11 VAL 11 A THR 12 n 12 THR 12 A ILE 13 n 13 ILE 13 A LYS 14 n 14 LYS 14 A ILE 15 n 15 ILE 15 A GLY 16 n 16 GLY 16 A GLY 17 n 17 GLY 17 A GLN 18 n 18 GLN 18 A LEU 19 n 19 LEU 19 A LYS 20 n 20 LYS 20 A GLU 21 n 21 GLU 21 A ALA 22 n 22 ALA 22 A LEU 23 n 23 LEU 23 A LEU 24 n 24 LEU 24 A ASP 25 n 25 ASP 25 A THR 26 n 26 THR 26 A GLY 27 n 27 GLY 27 A ALA 28 n 28 ALA 28 A ASP 29 n 29 ASP 29 A ASP 30 n 30 ASP 30 A THR 31 n 31 THR 31 A VAL 32 n 32 VAL 32 A LEU 33 n 33 LEU 33 A GLU 34 n 34 GLU 34 A GLU 35 n 35 GLU 35 A MET 36 n 36 MET 36 A ASN 37 n 37 ASN 37 A LEU 38 n 38 LEU 38 A PRO 39 n 39 PRO 39 A GLY 40 n 40 GLY 40 A ARG 41 n 41 ARG 41 A TRP 42 n 42 TRP 42 A LYS 43 n 43 LYS 43 A PRO 44 n 44 PRO 44 A LYS 45 n 45 LYS 45 A ILE 46 n 46 ILE 46 A ILE 47 n 47 ILE 47 A GLY 48 n 48 GLY 48 A GLY 49 n 49 GLY 49 A ILE 50 n 50 ILE 50 A GLY 51 n 51 GLY 51 A n 52 52 A n 53 53 A ILE 54 n 54 ILE 54 A LYS 55 n 55 LYS 55 A VAL 56 n 56 VAL 56 A ARG 57 n 57 ARG 57 A GLN 58 n 58 GLN 58 A TYR 59 n 59 TYR 59 A ASP 60 n 60 ASP 60 A GLN 61 n 61 GLN 61 A ILE 62 n 62 ILE 62 A LEU 63 n 63 LEU 63 A ILE 64 n 64 ILE 64 A GLU 65 n 65 GLU 65 A ILE 66 n 66 ILE 66 A CYS 67 n 67 CYS 67 A GLY 68 n 68 GLY 68 A HIS 69 n 69 HIS 69 A LYS 70 n 70 LYS 70 A ALA 71 n 71 ALA 71 A ILE 72 n 72 ILE 72 A GLY 73 n 73 GLY 73 A THR 74 n 74 THR 74 A VAL 75 n 75 VAL 75 A LEU 76 n 76 LEU 76 A VAL 77 n 77 VAL 77 A GLY 78 n 78 GLY 78 A PRO 79 n 79 PRO 79 A THR 80 n 80 THR 80 A PRO 81 n 81 PRO 81 A ALA 82 n 82 ALA 82 A ASN 83 n 83 ASN 83 A ILE 84 n 84 ILE 84 A ILE 85 n 85 ILE 85 A GLY 86 n 86 GLY 86 A ARG 87 n 87 ARG 87 A ASN 88 n 88 ASN 88 A LEU 89 n 89 LEU 89 A LEU 90 n 90 LEU 90 A THR 91 n 91 THR 91 A GLN 92 n 92 GLN 92 A ILE 93 n 93 ILE 93 A GLY 94 n 94 GLY 94 A CYS 95 n 95 CYS 95 A THR 96 n 96 THR 96 A LEU 97 n 97 LEU 97 A ASN 98 n 98 ASN 98 A PHE 99 n 99 PHE 99 A author_and_software_defined_assembly PISA 2 dimeric 5560 -18 9220 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 9_555 -x,-x+y,-z+2/3 crystal symmetry operation 0.0000000000 0.0000000000 54.5680000000 A N LYS 45 A N LYS 45 A O VAL 56 A O VAL 56 A N ILE 64 A N ILE 64 A O ALA 71 A O ALA 71 A O LEU 76 A O LEU 76 A N LEU 33 A N LEU 33 A N VAL 32 A N VAL 32 A O ILE 84 A O ILE 84 A O ILE 85 A O ILE 85 A N LEU 23 A N LEU 23 A O LYS 20 A O LYS 20 A N ILE 13 A N ILE 13 A N LYS 14 A N LYS 14 A O GLU 65 A O GLU 65 1 A CG ASN 37 A CG ASN 37 0 Y 1 A OD1 ASN 37 A OD1 ASN 37 0 Y 1 A ND2 ASN 37 A ND2 ASN 37 0 Y 1 A CB ILE 46 A CB ILE 46 0 Y 1 A CG1 ILE 46 A CG1 ILE 46 0 Y 1 A CG2 ILE 46 A CG2 ILE 46 0 Y 1 A CD1 ILE 46 A CD1 ILE 46 0 Y 1 A CG1 ILE 50 A CG1 ILE 50 0 Y 1 A CG2 ILE 50 A CG2 ILE 50 0 Y 1 A CD1 ILE 50 A CD1 ILE 50 0 Y 1 A CB ILE 54 A CB ILE 54 0 Y 1 A CG1 ILE 54 A CG1 ILE 54 0 Y 1 A CG2 ILE 54 A CG2 ILE 54 0 Y 1 A CD1 ILE 54 A CD1 ILE 54 0 Y 1 A CB LYS 55 A CB LYS 55 0 Y 1 A CG LYS 55 A CG LYS 55 0 Y 1 A CD LYS 55 A CD LYS 55 0 Y 1 A CE LYS 55 A CE LYS 55 0 Y 1 A NZ LYS 55 A NZ LYS 55 0 Y 1 A N51 3TL 200 B N51 3TL 1 1 N 1 A C51 3TL 200 B C51 3TL 1 1 N 1 A C52 3TL 200 B C52 3TL 1 1 N 1 A O51 3TL 200 B O51 3TL 1 1 N 1 A C53 3TL 200 B C53 3TL 1 1 N 1 A C54 3TL 200 B C54 3TL 1 1 N 1 A C55 3TL 200 B C55 3TL 1 1 N 1 A C59 3TL 200 B C59 3TL 1 1 N 1 A C56 3TL 200 B C56 3TL 1 1 N 1 A C58 3TL 200 B C58 3TL 1 1 N 1 A C57 3TL 200 B C57 3TL 1 1 N 1 A N52 3TL 200 B N52 3TL 1 1 N 1 A C60 3TL 200 B C60 3TL 1 1 N 1 A C61 3TL 200 B C61 3TL 1 1 N 1 A O52 3TL 200 B O52 3TL 1 1 N 1 A C62 3TL 200 B C62 3TL 1 1 N 1 A CG6 3TL 200 B CG6 3TL 1 1 N 1 A CG5 3TL 200 B CG5 3TL 1 1 N 1 A N54 3TL 200 B N54 3TL 1 1 N 1 A C68 3TL 200 B C68 3TL 1 1 N 1 A C69 3TL 200 B C69 3TL 1 1 N 1 A O54 3TL 200 B O54 3TL 1 1 N 1 A C70 3TL 200 B C70 3TL 1 1 N 1 A C81 3TL 200 B C81 3TL 1 1 N 1 A O58 3TL 200 B O58 3TL 1 1 N 1 A O59 3TL 200 B O59 3TL 1 1 N 1 A CA5 3TL 200 B CA5 3TL 1 1 N 1 A C50 3TL 200 B C50 3TL 1 1 N 1 A C63 3TL 200 B C63 3TL 1 1 N 1 A C64 3TL 200 B C64 3TL 1 1 N 1 A C65 3TL 200 B C65 3TL 1 1 N 1 A C66 3TL 200 B C66 3TL 1 1 N 1 A C67 3TL 200 B C67 3TL 1 1 N 1 A GLY 52 A GLY 52 1 Y 1 A LEU 53 A LEU 53 1 Y 1 A A C2 C2 3TL 3TL 200 200 1.46 1_555 9_555 1 A ILE 50 -93.43 -62.56 38.46 0.287 0.219 0.219 2.03 24.40 346 6841 6816 5.000 99.6 RANDOM 1 THROUGHOUT 2.000 MOLECULAR REPLACEMENT PDB ENTRY 2AZ8 ENGH & HUBER 2.03 24.40 83 859 33 0 743 0.017 1.80 25.50 1.24 2.030 24.400 2AZB 6816 1.000 0.064 1 24.3000 14.300 99.6 0.199 2.03 2.18 4.100 1 13.50 100.0 data collection MAR345 data reduction MOSFLM phasing MOLREP refinement CNS HIV-1 Protease NL4-3 3X mutant in complex with inhibitor, TL-3 1 N N 2 N N 3 N N The second monomer of the biological dimer is generated by the two fold axis: Y,X,-Z+1/3 A GLY 86 A GLY 86 HELX_P A THR 91 A THR 91 1 1 6 A GLN 92 A GLN 92 HELX_P A GLY 94 A GLY 94 5 2 3 HYDROLASE/HYDROLASE INHIBITOR HIV-1, protease, inhibitor, TL-3, HYDROLASE-HYDROLASE INHIBITOR COMPLEX POL_HV1BR UNP 1 69 P03367 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF 69 167 2AZB 1 99 P03367 A 1 1 99 1 GLN variant LYS 7 2AZB A P03367 UNP 75 7 1 SER variant ASN 37 2AZB A P03367 UNP 105 37 1 MET engineered mutation ILE 46 2AZB A P03367 UNP 114 46 1 PHE engineered mutation LEU 53 2AZB A P03367 UNP 121 53 1 VAL engineered mutation ALA 82 2AZB A P03367 UNP 150 82 8 anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel A LYS 43 A LYS 43 A ILE 46 A ILE 46 A LYS 55 A LYS 55 A ILE 66 A ILE 66 A HIS 69 A HIS 69 A VAL 77 A VAL 77 A VAL 32 A VAL 32 A LEU 33 A LEU 33 A ILE 84 A ILE 84 A ILE 85 A ILE 85 A GLN 18 A GLN 18 A LEU 24 A LEU 24 A LEU 10 A LEU 10 A ILE 15 A ILE 15 A LYS 55 A LYS 55 A ILE 66 A ILE 66 BINDING SITE FOR RESIDUE 3TL A 200 A 3TL 200 Software 16 A ARG 8 A ARG 8 16 9_555 A ASP 25 A ASP 25 16 9_555 A ASP 25 A ASP 25 16 1_555 A GLY 27 A GLY 27 16 1_555 A ALA 28 A ALA 28 16 1_555 A ASP 29 A ASP 29 16 1_555 A ASP 30 A ASP 30 16 1_555 A ILE 47 A ILE 47 16 1_555 A GLY 48 A GLY 48 16 1_555 A GLY 49 A GLY 49 16 1_555 A GLY 49 A GLY 49 16 11_455 A ILE 50 A ILE 50 16 1_555 A PRO 81 A PRO 81 16 9_555 A ILE 84 A ILE 84 16 9_555 A HOH 171 C HOH 16 1_555 A HOH 182 C HOH 16 1_555 178 P 61 2 2