0.018076 0.000000 0.000000 0.000000 0.016231 0.000000 0.000000 0.000000 0.013036 0.00000 0.00000 0.00000 Lee, J. Botuyan, M.V. Nomine, Y. Ohh, M. Thompson, J.R. Mer, G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 55.321 61.610 76.711 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be Published 0353 Crystal Structure and Binding Properties of ARNT PAS-B Heterodimerization Domain 10.2210/pdb2b02/pdb pdb_00002b02 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 CCD CUSTOM-MADE MAD M x-ray 1 0.96209 1.0 0.97932 1.0 0.97942 1.0 0.99503 1.0 19-BM APS 0.96209, 0.97932, 0.97942, 0.99503 SYNCHROTRON APS BEAMLINE 19-BM 14120.381 Aryl hydrocarbon receptor nuclear translocator PAS-B Domain C358S 1 man polymer 18.015 water 111 nat water ARNT protein, Dioxin receptor, nuclear translocator, Hypoxia-inducible factor 1 beta, HIF-1 beta no yes GH(MSE)SNVSQPTEFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSV (MSE)FRFRSKNQEWLW(MSE)RTSSFTFQNPYSDEIEYIICTNTNVKNSSQE GHMSNVSQPTEFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRS KNQEWLWMRTSSFTFQNPYSDEIEYIICTNTNVKNSSQE A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample ARNT 9606 Homo sapiens 562 Escherichia coli B834(DE3) PLASMID 1 2.3 47 8.65 Ammonium sulfate, PEG 400, HEPES, pH 8.65, VAPOR DIFFUSION, HANGING DROP, temperature 295K 295 database_2 struct_conn struct_ref_seq_dif repository Initial release Version format compliance Advisory Version format compliance Database references Derived calculations 1 0 2006-10-24 1 1 2008-05-01 1 2 2011-07-13 1 3 2021-10-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details RCSB Y RCSB 2005-09-12 REL REL HOH water HOH 1 2 HOH HOH 1 A HOH 2 2 HOH HOH 2 A HOH 3 2 HOH HOH 3 A HOH 4 2 HOH HOH 4 A HOH 5 2 HOH HOH 5 A HOH 6 2 HOH HOH 6 A HOH 7 2 HOH HOH 7 A HOH 8 2 HOH HOH 8 A HOH 9 2 HOH HOH 9 A HOH 10 2 HOH HOH 10 A HOH 11 2 HOH HOH 11 A HOH 12 2 HOH HOH 12 A HOH 13 2 HOH HOH 13 A HOH 14 2 HOH HOH 14 A HOH 15 2 HOH HOH 15 A HOH 16 2 HOH HOH 16 A HOH 17 2 HOH HOH 17 A HOH 18 2 HOH HOH 18 A HOH 19 2 HOH HOH 19 A HOH 20 2 HOH HOH 20 A HOH 21 2 HOH HOH 21 A HOH 22 2 HOH HOH 22 A HOH 23 2 HOH HOH 23 A HOH 24 2 HOH HOH 24 A HOH 25 2 HOH HOH 25 A HOH 26 2 HOH HOH 26 A HOH 27 2 HOH HOH 27 A HOH 28 2 HOH HOH 28 A HOH 29 2 HOH HOH 29 A HOH 30 2 HOH HOH 30 A HOH 31 2 HOH HOH 31 A HOH 32 2 HOH HOH 32 A HOH 33 2 HOH HOH 33 A HOH 34 2 HOH HOH 34 A HOH 35 2 HOH HOH 35 A HOH 36 2 HOH HOH 36 A HOH 37 2 HOH HOH 37 A HOH 38 2 HOH HOH 38 A HOH 39 2 HOH HOH 39 A HOH 40 2 HOH HOH 40 A HOH 41 2 HOH HOH 41 A HOH 42 2 HOH HOH 42 A HOH 43 2 HOH HOH 43 A HOH 44 2 HOH HOH 44 A HOH 45 2 HOH HOH 45 A HOH 46 2 HOH HOH 46 A HOH 47 2 HOH HOH 47 A HOH 48 2 HOH HOH 48 A HOH 49 2 HOH HOH 49 A HOH 50 2 HOH HOH 50 A HOH 51 2 HOH HOH 51 A HOH 52 2 HOH HOH 52 A HOH 53 2 HOH HOH 53 A HOH 54 2 HOH HOH 54 A HOH 55 2 HOH HOH 55 A HOH 56 2 HOH HOH 56 A HOH 57 2 HOH HOH 57 A HOH 58 2 HOH HOH 58 A HOH 59 2 HOH HOH 59 A HOH 60 2 HOH HOH 60 A HOH 61 2 HOH HOH 61 A HOH 62 2 HOH HOH 62 A HOH 63 2 HOH HOH 63 A HOH 64 2 HOH HOH 64 A HOH 65 2 HOH HOH 65 A HOH 66 2 HOH HOH 66 A HOH 67 2 HOH HOH 67 A HOH 68 2 HOH HOH 68 A HOH 69 2 HOH HOH 69 A HOH 70 2 HOH HOH 70 A HOH 71 2 HOH HOH 71 A HOH 72 2 HOH HOH 72 A HOH 73 2 HOH HOH 73 A HOH 74 2 HOH HOH 74 A HOH 75 2 HOH HOH 75 A HOH 76 2 HOH HOH 76 A HOH 77 2 HOH HOH 77 A HOH 78 2 HOH HOH 78 A HOH 79 2 HOH HOH 79 A HOH 80 2 HOH HOH 80 A HOH 81 2 HOH HOH 81 A HOH 82 2 HOH HOH 82 A HOH 83 2 HOH HOH 83 A HOH 84 2 HOH HOH 84 A HOH 85 2 HOH HOH 85 A HOH 86 2 HOH HOH 86 A HOH 87 2 HOH HOH 87 A HOH 88 2 HOH HOH 88 A HOH 89 2 HOH HOH 89 A HOH 90 2 HOH HOH 90 A HOH 91 2 HOH HOH 91 A HOH 92 2 HOH HOH 92 A HOH 93 2 HOH HOH 93 A HOH 94 2 HOH HOH 94 A HOH 95 2 HOH HOH 95 A HOH 96 2 HOH HOH 96 A HOH 97 2 HOH HOH 97 A HOH 98 2 HOH HOH 98 A HOH 99 2 HOH HOH 99 A HOH 100 2 HOH HOH 100 A HOH 101 2 HOH HOH 101 A HOH 102 2 HOH HOH 102 A HOH 103 2 HOH HOH 103 A HOH 104 2 HOH HOH 104 A HOH 105 2 HOH HOH 105 A HOH 106 2 HOH HOH 106 A HOH 107 2 HOH HOH 107 A HOH 108 2 HOH HOH 108 A HOH 109 2 HOH HOH 109 A HOH 110 2 HOH HOH 110 A HOH 111 2 HOH HOH 111 A n 1 352 A n 2 353 A MSE 354 n 3 MSE 354 A SER 355 n 4 SER 355 A ASN 356 n 5 ASN 356 A VAL 357 n 6 VAL 357 A SER 358 n 7 SER 358 A GLN 359 n 8 GLN 359 A PRO 360 n 9 PRO 360 A THR 361 n 10 THR 361 A GLU 362 n 11 GLU 362 A PHE 363 n 12 PHE 363 A ILE 364 n 13 ILE 364 A SER 365 n 14 SER 365 A ARG 366 n 15 ARG 366 A HIS 367 n 16 HIS 367 A ASN 368 n 17 ASN 368 A ILE 369 n 18 ILE 369 A GLU 370 n 19 GLU 370 A GLY 371 n 20 GLY 371 A ILE 372 n 21 ILE 372 A PHE 373 n 22 PHE 373 A THR 374 n 23 THR 374 A PHE 375 n 24 PHE 375 A VAL 376 n 25 VAL 376 A ASP 377 n 26 ASP 377 A HIS 378 n 27 HIS 378 A ARG 379 n 28 ARG 379 A CYS 380 n 29 CYS 380 A VAL 381 n 30 VAL 381 A ALA 382 n 31 ALA 382 A THR 383 n 32 THR 383 A VAL 384 n 33 VAL 384 A GLY 385 n 34 GLY 385 A TYR 386 n 35 TYR 386 A GLN 387 n 36 GLN 387 A PRO 388 n 37 PRO 388 A GLN 389 n 38 GLN 389 A GLU 390 n 39 GLU 390 A LEU 391 n 40 LEU 391 A LEU 392 n 41 LEU 392 A GLY 393 n 42 GLY 393 A LYS 394 n 43 LYS 394 A ASN 395 n 44 ASN 395 A ILE 396 n 45 ILE 396 A VAL 397 n 46 VAL 397 A GLU 398 n 47 GLU 398 A PHE 399 n 48 PHE 399 A CYS 400 n 49 CYS 400 A HIS 401 n 50 HIS 401 A PRO 402 n 51 PRO 402 A GLU 403 n 52 GLU 403 A ASP 404 n 53 ASP 404 A GLN 405 n 54 GLN 405 A GLN 406 n 55 GLN 406 A LEU 407 n 56 LEU 407 A LEU 408 n 57 LEU 408 A ARG 409 n 58 ARG 409 A ASP 410 n 59 ASP 410 A SER 411 n 60 SER 411 A PHE 412 n 61 PHE 412 A GLN 413 n 62 GLN 413 A GLN 414 n 63 GLN 414 A VAL 415 n 64 VAL 415 A VAL 416 n 65 VAL 416 A LYS 417 n 66 LYS 417 A LEU 418 n 67 LEU 418 A LYS 419 n 68 LYS 419 A GLY 420 n 69 GLY 420 A GLN 421 n 70 GLN 421 A VAL 422 n 71 VAL 422 A LEU 423 n 72 LEU 423 A SER 424 n 73 SER 424 A VAL 425 n 74 VAL 425 A MSE 426 n 75 MSE 426 A PHE 427 n 76 PHE 427 A ARG 428 n 77 ARG 428 A PHE 429 n 78 PHE 429 A ARG 430 n 79 ARG 430 A SER 431 n 80 SER 431 A LYS 432 n 81 LYS 432 A ASN 433 n 82 ASN 433 A GLN 434 n 83 GLN 434 A GLU 435 n 84 GLU 435 A TRP 436 n 85 TRP 436 A LEU 437 n 86 LEU 437 A TRP 438 n 87 TRP 438 A MSE 439 n 88 MSE 439 A ARG 440 n 89 ARG 440 A THR 441 n 90 THR 441 A SER 442 n 91 SER 442 A SER 443 n 92 SER 443 A PHE 444 n 93 PHE 444 A THR 445 n 94 THR 445 A PHE 446 n 95 PHE 446 A GLN 447 n 96 GLN 447 A ASN 448 n 97 ASN 448 A PRO 449 n 98 PRO 449 A TYR 450 n 99 TYR 450 A SER 451 n 100 SER 451 A ASP 452 n 101 ASP 452 A GLU 453 n 102 GLU 453 A ILE 454 n 103 ILE 454 A GLU 455 n 104 GLU 455 A TYR 456 n 105 TYR 456 A ILE 457 n 106 ILE 457 A ILE 458 n 107 ILE 458 A CYS 459 n 108 CYS 459 A THR 460 n 109 THR 460 A ASN 461 n 110 ASN 461 A THR 462 n 111 THR 462 A ASN 463 n 112 ASN 463 A VAL 464 n 113 VAL 464 A n 114 465 A n 115 466 A n 116 467 A n 117 468 A n 118 469 A n 119 470 A 0.6535 -0.0597 0.0348 1.6424 -0.1742 0.6748 0.0504 0.0328 0.0857 0.0128 -0.0234 0.0708 0.0085 -0.0447 -0.0270 -0.0261 0.0064 0.0060 -0.0182 0.0162 -0.0313 refined 20.5425 38.2812 22.8709 X-RAY DIFFRACTION A 354 A 3 A 464 A 113 X-RAY DIFFRACTION 1 author_defined_assembly 1 monomeric A MSE 354 SELENOMETHIONINE A MSE 3 MET A MSE 426 SELENOMETHIONINE A MSE 75 MET A MSE 439 SELENOMETHIONINE A MSE 88 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O THR 374 A O THR 23 A N ARG 366 A N ARG 15 A N SER 365 A N SER 14 A O CYS 459 A O CYS 108 A O GLU 455 A O GLU 104 A N PHE 446 A N PHE 95 A O MSE 439 A O MSE 88 A N PHE 427 A N PHE 76 1 A HOH 43 B HOH 1 A GLY 352 A GLY 1 1 Y 1 A HIS 353 A HIS 2 1 Y 1 A LYS 465 A LYS 114 1 Y 1 A ASN 466 A ASN 115 1 Y 1 A SER 467 A SER 116 1 Y 1 A SER 468 A SER 117 1 Y 1 A GLN 469 A GLN 118 1 Y 1 A GLU 470 A GLU 119 1 Y 1 A A OE2 O GLU HOH 403 37 2.19 B 21.71 -0.28000 0.00000 0.00000 -0.55000 0.00000 0.83000 0.963 0.952 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.208 0.187 0.188 1.50 48.06 1093 20229 5.100 99.5 2.327 0.043 RANDOM LIKELY RESIDUAL 1 THROUGHOUT MAD 0.076 0.075 0.80 0.80 1.20 MAXIMUM LIKELIHOOD WITH PHASES MASK 1.50 48.06 111 1032 0 0 921 0.009 0.022 1029 1.187 1.923 1406 5.561 5.000 129 40.109 24.259 54 11.978 15.000 182 24.580 15.000 7 0.086 0.200 152 0.005 0.020 812 0.211 0.200 464 0.300 0.200 737 0.145 0.200 100 0.178 0.200 55 0.137 0.200 16 0.921 1.500 634 1.216 2.000 1018 2.062 3.000 449 3.073 4.500 388 0.272 0.237 1.54 83 1452 20 99.03 1.50 48.06 2B02 4398 0 0.04 1 396.7 4.6 99.6 0.473 1.50 1.55 13.2 1 4.4 99.3 refinement REFMAC 5.2.0005 data reduction HKL-2000 data scaling HKL-2000 phasing SOLVE Crystal Structure of ARNT PAS-B Domain 1 N N 2 N N A ARG 379 A ARG 28 HELX_P A GLY 385 A GLY 34 1 1 7 A GLN 387 A GLN 36 HELX_P A LEU 391 A LEU 40 5 2 5 A ASN 395 A ASN 44 HELX_P A CYS 400 A CYS 49 5 3 6 A HIS 401 A HIS 50 HELX_P A GLU 403 A GLU 52 5 4 3 A ASP 404 A ASP 53 HELX_P A LEU 418 A LEU 67 1 5 15 covale 1.329 both A MSE 354 A C MSE 3 1_555 A SER 355 A N SER 4 1_555 covale 1.328 both B A VAL 425 A C VAL 74 1_555 A MSE 426 A N MSE 75 1_555 covale 1.333 both A A VAL 425 A C VAL 74 1_555 A MSE 426 A N MSE 75 1_555 covale 1.323 both B A MSE 426 A C MSE 75 1_555 A PHE 427 A N PHE 76 1_555 covale 1.338 both A A MSE 426 A C MSE 75 1_555 A PHE 427 A N PHE 76 1_555 covale 1.329 both B A TRP 438 A C TRP 87 1_555 A MSE 439 A N MSE 88 1_555 covale 1.327 both A A TRP 438 A C TRP 87 1_555 A MSE 439 A N MSE 88 1_555 covale 1.338 both B A MSE 439 A C MSE 88 1_555 A ARG 440 A N ARG 89 1_555 covale 1.323 both A A MSE 439 A C MSE 88 1_555 A ARG 440 A N ARG 89 1_555 TRANSCRIPTION PAS DOMAIN, ARNT, HIF, AHR, TRANSCRIPTION ARNT_HUMAN UNP 1 354 P27540 354 470 2B02 354 470 P27540 A 1 3 119 1 cloning artifact GLY 352 2B02 A P27540 UNP 1 1 cloning artifact HIS 353 2B02 A P27540 UNP 2 1 MET modified residue MSE 354 2B02 A P27540 UNP 354 3 1 CYS engineered mutation SER 358 2B02 A P27540 UNP 358 7 1 MET modified residue MSE 426 2B02 A P27540 UNP 426 75 1 MET modified residue MSE 439 2B02 A P27540 UNP 439 88 5 anti-parallel anti-parallel anti-parallel anti-parallel A PHE 373 A PHE 22 A VAL 376 A VAL 25 A GLU 362 A GLU 11 A HIS 367 A HIS 16 A ILE 454 A ILE 103 A ASN 463 A ASN 112 A TRP 436 A TRP 85 A GLN 447 A GLN 96 A LEU 423 A LEU 72 A ARG 430 A ARG 79 23 I 2 2 2