1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Bjorndahl, T.C. Andrew, L.C. Wishart, D.S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C2 H4 O 44.053 ACETYL GROUP non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking C9 H18 N2 O3 202.251 n ethyl (4~{S})-4,7-bis(azanyl)-7-oxidanylidene-heptanoate L-peptide COOH carboxy terminus N 1 N C N 2 N O N 3 N C N 4 N H N 5 N H N 6 N H N 7 N H N 8 N N N 9 S C N 10 N C N 11 N O N 12 N C N 13 N O N 14 N H N 15 N H N 16 N H N 17 N H N 18 N H N 19 N H N 20 N H N 21 N N N 22 S C N 23 N C N 24 N O N 25 N C N 26 N C N 27 N C N 28 N N N 29 N C N 30 N N N 31 N N N 32 N O N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N N N 49 S C N 50 N C N 51 N O N 52 N C N 53 N C N 54 N O N 55 N N N 56 N O N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N N N 66 S C N 67 N C N 68 N O N 69 N C N 70 N C N 71 N O N 72 N O N 73 N O N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N N N 82 R C N 83 N C N 84 N O N 85 N C N 86 N S N 87 N O N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N N N 96 S C N 97 N C N 98 N O N 99 N C N 100 N C N 101 N C N 102 N O N 103 N N N 104 N O N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N N N 116 S C N 117 N C N 118 N O N 119 N C N 120 N C N 121 N C N 122 N O N 123 N O N 124 N O N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N N N 135 N C N 136 N C N 137 N O N 138 N O N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N N N 145 S C N 146 N C N 147 N O N 148 N C Y 149 N C Y 150 N N Y 151 N C Y 152 N C Y 153 N N N 154 N O N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N N N 166 S C N 167 N C N 168 N O N 169 S C N 170 N C N 171 N C N 172 N C N 173 N O N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N N N 188 S C N 189 N C N 190 N O N 191 N C N 192 N C N 193 N C N 194 N C N 195 N O N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N N N 210 S C N 211 N C N 212 N O N 213 N C N 214 N C N 215 N C N 216 N C N 217 N N N 218 N O N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N N N 235 S C N 236 N C N 237 N O N 238 N C N 239 N C N 240 N S N 241 N C N 242 N O N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N N N 255 S C N 256 N C N 257 N O N 258 N C Y 259 N C Y 260 N C Y 261 N C Y 262 N C Y 263 N C Y 264 N C N 265 N O N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N N N 278 S C N 279 N C N 280 N O N 281 N C N 282 N C N 283 N C N 284 N O N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N N N 295 S C N 296 N C N 297 N O N 298 N C N 299 N O N 300 N O N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N N N 309 S C N 310 N C N 311 N O N 312 R C N 313 N O N 314 N C N 315 N O N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N N N 326 S C N 327 N C N 328 N O N 329 N C Y 330 N C Y 331 N C Y 332 N C Y 333 N C Y 334 N C Y 335 N C N 336 N O N 337 N O N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N N N 350 S C N 351 N C N 352 N O N 353 N C N 354 N C N 355 N C N 356 N O N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N N N 369 S C N 370 N C N 371 N C N 372 N C N 373 N O N 374 N N N 375 N C N 376 N C N 377 N C N 378 N O N 379 N O N 380 N C N 381 N C N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 1 N doub N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N doub N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N doub N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N doub N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N doub N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N doub N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N doub N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N doub N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N doub N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N doub N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N doub N 142 N sing N 143 N sing N 144 N sing N 145 N sing Y 146 N sing Y 147 N doub Y 148 N doub N 149 N sing Y 150 N sing N 151 N sing Y 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N doub N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N doub N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N doub N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N doub N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N doub N 248 N sing N 249 N sing N 250 N sing N 251 N sing Y 252 N doub Y 253 N sing Y 254 N sing N 255 N sing Y 256 N doub N 257 N sing Y 258 N doub N 259 N sing Y 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N doub N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N doub N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N doub N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N doub N 317 N sing N 318 N sing N 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N doub N 326 N sing Y 327 N doub N 328 N sing Y 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N doub N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N doub N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing US Biochemistry BICHAW 0033 0006-2960 46 12945 12958 10.1021/bi7010866 17944485 NMR solution structures of the apo and peptide-inhibited human rhinovirus 3C protease (Serotype 14): structural and dynamic comparison 2007 10.2210/pdb2b0f/pdb pdb_00002b0f 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M x-ray 1 1.0 20021.877 Protease 3C 3.4.22.28 Human Rhinovirus serotype 14 3C Protease 1 man polymer 801.970 Ace-LEALFQ-ethylpropionate 1 syn polymer Picornain 3C,P3C no no GPNTEFALSLLRKNIMTITTSKGEFTGLGIHDRVCVIPTHAQPGDDVLVNGQKIRVKDKYKLVDPENINLELTVLTLDRN EKFRDIRGFISEDLEGVDATLVVHSNNFTNTILEVGPVTMAGLINLSSTPTNRMIRYDYATKTGQCGGVLCATGKIFGIH VGGNGRQGFSAQLKKQYFVEKQ GPNTEFALSLLRKNIMTITTSKGEFTGLGIHDRVCVIPTHAQPGDDVLVNGQKIRVKDKYKLVDPENINLELTVLTLDRN EKFRDIRGFISEDLEGVDATLVVHSNNFTNTILEVGPVTMAGLINLSSTPTNRMIRYDYATKTGQCGGVLCATGKIFGIH VGGNGRQGFSAQLKKQYFVEKQ A polypeptide(L) no yes (ACE)LEALF(YTF) XLEALFQ B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Rhinovirus Human rhinovirus B Escherichia Escherichia coli sample 1 182 12131 rhinovirus B14 469008 Escherichia coli BL21(DE3) BL21-DE3 plasmid Biological sequence pLysS atom_site chem_comp database_2 entity entity_name_com entity_poly entity_poly_seq entity_src_gen pdbx_entity_src_syn pdbx_poly_seq_scheme pdbx_unobs_or_zero_occ_atoms struct_conn struct_ref struct_ref_seq atom_site chem_comp_atom chem_comp_bond struct_conn repository Initial release Version format compliance Atomic model Database references Derived calculations Non-polymer description Structure summary Version format compliance Other Advisory Atomic model Database references Derived calculations Non-polymer description Polymer sequence Source and taxonomy Structure summary Atomic model Data collection Derived calculations 1 0 2006-09-05 1 1 2008-05-01 1 2 2011-07-13 1 3 2012-12-12 2 0 2023-03-01 3 0 2023-11-15 _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.group_PDB _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.type_symbol _chem_comp.formula _chem_comp.formula_weight _chem_comp.id _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.type _database_2.pdbx_DOI _database_2.pdbx_database_accession _entity.formula_weight _entity.pdbx_description _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_seq_type _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref_seq.db_align_beg _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_auth_seq_align_end _struct_ref_seq.seq_align_end _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_atom_id _atom_site.label_atom_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr2_label_atom_id Same protein of a different serotype (2) shares 51% sequence identity Polio 3C protease, another homologue sharing 46% seqence identity. RCSB Y RCSB 2005-09-13 REL REL Peptidyl inhibitor synthesized via solid and solution phase pedtide synthesis 32630 synthetic construct sample 1 7 Inhibitor Ace-LEALFQ-ethylpropionate Peptide-like H-bond donors determined from 15N HSQC exchanged into D2O. 3J HNHA couplings determined from HNHA. 13C-seperated NOESY collected in 99.96% D2O without wet water suppression to achieve cross strand beta-sheet HA-HA NOEs. back calculated data agree with experimental NOESY spectrum,structures with acceptable covalent geometry,structures with favorable non-bond energy,structures with the least restraint violations,structures with the lowest energy 100 20 3D_13C-separated_NOESY 3D_15N-separated_NOESY 3D_13C-separated_NOESY 2D NOESY HNHA 15N HSQC 20mM KH2PO4 6.5 ambient 25 K 20mM KH2PO4 6.5 ambient 25 K simulated annealing molecular dynamics torsion angle dynamics RECOORD water refinement 1 lowest energy 0.75mM HRV14-3C with covalent inhibitor 20mM KH2PO4 15mM DTT 0.5mM EDTA 0.1mM DSS pH 6.5; 90% H2O, 10% D2O 90% H2O/10% D2O 0.75mM HRV14-3C with covalent inhibitor 20mM KH2PO4 15mM DTT 0.5mM EDTA 0.1mM DSS pD 6.5; 99.96% D2O 99.96% D2O Brunger structure solution X-PLOR XPLOR-NIH v.2.10 Brunger refinement CNS 1.1 500 Varian INOVA GLY 1 n 1 GLY 1 A PRO 2 n 2 PRO 2 A ASN 3 n 3 ASN 3 A THR 4 n 4 THR 4 A GLU 5 n 5 GLU 5 A PHE 6 n 6 PHE 6 A ALA 7 n 7 ALA 7 A LEU 8 n 8 LEU 8 A SER 9 n 9 SER 9 A LEU 10 n 10 LEU 10 A LEU 11 n 11 LEU 11 A ARG 12 n 12 ARG 12 A LYS 13 n 13 LYS 13 A ASN 14 n 14 ASN 14 A ILE 15 n 15 ILE 15 A MET 16 n 16 MET 16 A THR 17 n 17 THR 17 A ILE 18 n 18 ILE 18 A THR 19 n 19 THR 19 A THR 20 n 20 THR 20 A SER 21 n 21 SER 21 A LYS 22 n 22 LYS 22 A GLY 23 n 23 GLY 23 A GLU 24 n 24 GLU 24 A PHE 25 n 25 PHE 25 A THR 26 n 26 THR 26 A GLY 27 n 27 GLY 27 A LEU 28 n 28 LEU 28 A GLY 29 n 29 GLY 29 A ILE 30 n 30 ILE 30 A HIS 31 n 31 HIS 31 A ASP 32 n 32 ASP 32 A ARG 33 n 33 ARG 33 A VAL 34 n 34 VAL 34 A CYS 35 n 35 CYS 35 A VAL 36 n 36 VAL 36 A ILE 37 n 37 ILE 37 A PRO 38 n 38 PRO 38 A THR 39 n 39 THR 39 A HIS 40 n 40 HIS 40 A ALA 41 n 41 ALA 41 A GLN 42 n 42 GLN 42 A PRO 43 n 43 PRO 43 A GLY 44 n 44 GLY 44 A ASP 45 n 45 ASP 45 A ASP 46 n 46 ASP 46 A VAL 47 n 47 VAL 47 A LEU 48 n 48 LEU 48 A VAL 49 n 49 VAL 49 A ASN 50 n 50 ASN 50 A GLY 51 n 51 GLY 51 A GLN 52 n 52 GLN 52 A LYS 53 n 53 LYS 53 A ILE 54 n 54 ILE 54 A ARG 55 n 55 ARG 55 A VAL 56 n 56 VAL 56 A LYS 57 n 57 LYS 57 A ASP 58 n 58 ASP 58 A LYS 59 n 59 LYS 59 A TYR 60 n 60 TYR 60 A LYS 61 n 61 LYS 61 A LEU 62 n 62 LEU 62 A VAL 63 n 63 VAL 63 A ASP 64 n 64 ASP 64 A PRO 65 n 65 PRO 65 A GLU 66 n 66 GLU 66 A ASN 67 n 67 ASN 67 A ILE 68 n 68 ILE 68 A ASN 69 n 69 ASN 69 A LEU 70 n 70 LEU 70 A GLU 71 n 71 GLU 71 A LEU 72 n 72 LEU 72 A THR 73 n 73 THR 73 A VAL 74 n 74 VAL 74 A LEU 75 n 75 LEU 75 A THR 76 n 76 THR 76 A LEU 77 n 77 LEU 77 A ASP 78 n 78 ASP 78 A ARG 79 n 79 ARG 79 A ASN 80 n 80 ASN 80 A GLU 81 n 81 GLU 81 A LYS 82 n 82 LYS 82 A PHE 83 n 83 PHE 83 A ARG 84 n 84 ARG 84 A ASP 85 n 85 ASP 85 A ILE 86 n 86 ILE 86 A ARG 87 n 87 ARG 87 A GLY 88 n 88 GLY 88 A PHE 89 n 89 PHE 89 A ILE 90 n 90 ILE 90 A SER 91 n 91 SER 91 A GLU 92 n 92 GLU 92 A ASP 93 n 93 ASP 93 A LEU 94 n 94 LEU 94 A GLU 95 n 95 GLU 95 A GLY 96 n 96 GLY 96 A VAL 97 n 97 VAL 97 A ASP 98 n 98 ASP 98 A ALA 99 n 99 ALA 99 A THR 100 n 100 THR 100 A LEU 101 n 101 LEU 101 A VAL 102 n 102 VAL 102 A VAL 103 n 103 VAL 103 A HIS 104 n 104 HIS 104 A SER 105 n 105 SER 105 A ASN 106 n 106 ASN 106 A ASN 107 n 107 ASN 107 A PHE 108 n 108 PHE 108 A THR 109 n 109 THR 109 A ASN 110 n 110 ASN 110 A THR 111 n 111 THR 111 A ILE 112 n 112 ILE 112 A LEU 113 n 113 LEU 113 A GLU 114 n 114 GLU 114 A VAL 115 n 115 VAL 115 A GLY 116 n 116 GLY 116 A PRO 117 n 117 PRO 117 A VAL 118 n 118 VAL 118 A THR 119 n 119 THR 119 A MET 120 n 120 MET 120 A ALA 121 n 121 ALA 121 A GLY 122 n 122 GLY 122 A LEU 123 n 123 LEU 123 A ILE 124 n 124 ILE 124 A ASN 125 n 125 ASN 125 A LEU 126 n 126 LEU 126 A SER 127 n 127 SER 127 A SER 128 n 128 SER 128 A THR 129 n 129 THR 129 A PRO 130 n 130 PRO 130 A THR 131 n 131 THR 131 A ASN 132 n 132 ASN 132 A ARG 133 n 133 ARG 133 A MET 134 n 134 MET 134 A ILE 135 n 135 ILE 135 A ARG 136 n 136 ARG 136 A TYR 137 n 137 TYR 137 A ASP 138 n 138 ASP 138 A TYR 139 n 139 TYR 139 A ALA 140 n 140 ALA 140 A THR 141 n 141 THR 141 A LYS 142 n 142 LYS 142 A THR 143 n 143 THR 143 A GLY 144 n 144 GLY 144 A GLN 145 n 145 GLN 145 A CYS 146 n 146 CYS 146 A GLY 147 n 147 GLY 147 A GLY 148 n 148 GLY 148 A VAL 149 n 149 VAL 149 A LEU 150 n 150 LEU 150 A CYS 151 n 151 CYS 151 A ALA 152 n 152 ALA 152 A THR 153 n 153 THR 153 A GLY 154 n 154 GLY 154 A LYS 155 n 155 LYS 155 A ILE 156 n 156 ILE 156 A PHE 157 n 157 PHE 157 A GLY 158 n 158 GLY 158 A ILE 159 n 159 ILE 159 A HIS 160 n 160 HIS 160 A VAL 161 n 161 VAL 161 A GLY 162 n 162 GLY 162 A GLY 163 n 163 GLY 163 A ASN 164 n 164 ASN 164 A GLY 165 n 165 GLY 165 A ARG 166 n 166 ARG 166 A GLN 167 n 167 GLN 167 A GLY 168 n 168 GLY 168 A PHE 169 n 169 PHE 169 A SER 170 n 170 SER 170 A ALA 171 n 171 ALA 171 A GLN 172 n 172 GLN 172 A LEU 173 n 173 LEU 173 A LYS 174 n 174 LYS 174 A LYS 175 n 175 LYS 175 A GLN 176 n 176 GLN 176 A TYR 177 n 177 TYR 177 A PHE 178 n 178 PHE 178 A VAL 179 n 179 VAL 179 A GLU 180 n 180 GLU 180 A LYS 181 n 181 LYS 181 A GLN 182 n 182 GLN 182 A ACE 1 n 1 ACE 1 B LEU 2 n 2 LEU 2 B GLU 3 n 3 GLU 3 B ALA 4 n 4 ALA 4 B LEU 5 n 5 LEU 5 B PHE 6 n 6 PHE 6 B GLN 7 n 7 YTF 7 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N MET 16 A N MET 16 A O GLY 27 A O GLY 27 A N LEU 28 A N LEU 28 A O VAL 36 A O VAL 36 A N CYS 35 A N CYS 35 A O LEU 75 A O LEU 75 A O LEU 72 A O LEU 72 A N LEU 62 A N LEU 62 A O ILE 54 A O ILE 54 A N VAL 47 A N VAL 47 A O LEU 48 A O LEU 48 A N THR 19 A N THR 19 A N THR 119 A N THR 119 A O ARG 136 A O ARG 136 A N ILE 135 A N ILE 135 A O SER 170 A O SER 170 A O GLN 167 A O GLN 167 A N ASN 164 A N ASN 164 A O LEU 113 A O LEU 113 A N LEU 101 A N LEU 101 A N VAL 102 A N VAL 102 A O VAL 149 A O VAL 149 A N ALA 152 A N ALA 152 A O LYS 155 A O LYS 155 A N GLY 163 A N GLY 163 B O LEU 5 B O LEU 5 B O LEU 5 B O LEU 5 A N GLY 163 A N GLY 163 1 A O GLN 182 A O GLN 182 1 Y 2 A O GLN 182 A O GLN 182 1 Y 3 A O GLN 182 A O GLN 182 1 Y 4 A O GLN 182 A O GLN 182 1 Y 5 A O GLN 182 A O GLN 182 1 Y 6 A O GLN 182 A O GLN 182 1 Y 7 A O GLN 182 A O GLN 182 1 Y 8 A O GLN 182 A O GLN 182 1 Y 9 A O GLN 182 A O GLN 182 1 Y 10 A O GLN 182 A O GLN 182 1 Y 11 A O GLN 182 A O GLN 182 1 Y 12 A O GLN 182 A O GLN 182 1 Y 13 A O GLN 182 A O GLN 182 1 Y 14 A O GLN 182 A O GLN 182 1 Y 15 A O GLN 182 A O GLN 182 1 Y 16 A O GLN 182 A O GLN 182 1 Y 17 A O GLN 182 A O GLN 182 1 Y 18 A O GLN 182 A O GLN 182 1 Y 19 A O GLN 182 A O GLN 182 1 Y 20 A O GLN 182 A O GLN 182 1 Y 2 A A H O LEU LEU 62 72 1.52 2 A A O H GLY HIS 148 160 1.54 2 A A O H THR ARG 119 136 1.57 2 A A H O LEU LEU 101 113 1.58 3 A A O HG LEU SER 126 127 1.49 3 A B H O SER ALA 127 4 1.55 3 A A O H GLY HIS 148 160 1.59 3 A A H O LEU LEU 62 72 1.59 4 A A HG1 OE2 THR GLU 100 114 1.56 5 A A O HG LEU SER 126 127 1.38 5 A A OE1 HZ1 GLU LYS 92 175 1.51 5 A A H O ILE VAL 30 34 1.56 5 A A O H GLY HIS 148 160 1.57 6 A A H O ASP ILE 64 68 1.56 7 A A O H ASP ASN 64 67 1.48 7 A A H O LEU LEU 62 72 1.56 8 A A H O ILE SER 135 170 1.57 8 A A OD2 HE ASP ARG 45 55 1.59 8 A A O H GLY HIS 148 160 1.60 9 A A H O LEU LEU 62 72 1.51 9 A A OD2 HH ASP TYR 64 177 1.56 9 A A O H PHE LEU 157 173 1.56 9 A A H O ILE SER 135 170 1.58 9 A A HD22 O ASN ARG 14 84 1.58 10 A A O HZ1 GLU LYS 95 155 1.55 10 A A O H ASP ASN 64 67 1.57 10 A A O H GLY HIS 148 160 1.59 11 A A OD2 HE ASP ARG 64 133 1.56 11 A A OD2 HH22 ASP ARG 138 166 1.58 11 A A H O ASP ILE 64 68 1.58 11 A A O H THR ARG 119 136 1.59 12 A A H O ILE SER 135 170 1.57 12 A A OD1 HH11 ASP ARG 64 133 1.59 13 A A H O ILE SER 135 170 1.54 13 A A O H GLY HIS 148 160 1.55 13 A A H O LEU LEU 62 72 1.59 13 A A O H THR ARG 119 136 1.60 14 A A O HG SER SER 127 128 1.39 14 A A OD2 HE ASP ARG 64 133 1.53 14 A A H O THR ARG 119 136 1.54 14 A A H O LEU LEU 62 72 1.56 14 A A H O ILE SER 135 170 1.58 15 A A O H GLY HIS 148 160 1.54 15 A A HD22 O ASN GLY 14 29 1.57 16 A A O H HIS VAL 31 34 1.56 16 A A H O ILE SER 135 170 1.57 17 A A O HG LEU SER 126 127 1.46 18 A A O H THR ARG 119 136 1.58 18 A A H O ASP ILE 64 68 1.60 19 A A O HG LEU SER 126 127 1.49 19 A A H O ILE SER 135 170 1.56 19 A A O H GLY HIS 148 160 1.57 20 A A O HG LEU SER 126 127 1.44 9 A ARG 133 0.081 SIDE CHAIN 10 A ARG 33 0.089 SIDE CHAIN 15 A ARG 166 0.074 SIDE CHAIN 16 A ARG 55 0.091 SIDE CHAIN 1 A ASP 32 52.06 -89.21 1 A GLN 42 61.12 69.07 1 A ASN 67 39.99 61.98 1 A GLU 71 80.61 7.89 1 A GLU 95 55.75 13.48 1 A ASN 110 69.39 70.40 1 A TYR 139 -163.06 114.70 1 A THR 143 -45.03 155.68 2 A ASP 32 55.12 -90.89 2 A HIS 40 -68.42 4.02 2 A GLN 42 57.99 70.97 2 A PRO 65 -55.88 -5.16 2 A LEU 94 -74.82 -80.78 2 A GLU 95 45.26 71.38 2 A SER 105 -121.63 -163.91 2 A ASN 110 74.44 71.87 2 A SER 128 81.41 0.58 2 A ALA 140 -69.85 90.66 2 A THR 143 -44.30 158.92 3 A THR 20 -118.05 -162.95 3 A ASP 32 44.99 -101.37 3 A GLN 42 62.51 71.38 3 A ASP 58 -171.96 132.23 3 A PRO 65 -48.00 -10.21 3 A LEU 94 -100.07 -68.09 3 A GLU 95 41.70 73.87 3 A SER 105 -109.77 -160.67 3 A SER 128 85.65 -3.68 3 A TYR 139 -178.42 133.75 3 A THR 143 -43.30 161.46 4 A THR 20 -146.40 -157.55 4 A ASP 32 58.36 -88.07 4 A GLN 42 56.31 71.96 4 A LEU 94 -60.75 -72.23 4 A ASN 110 66.73 73.36 4 A ALA 121 -90.07 -66.24 4 A THR 143 -43.10 150.25 4 B GLU 3 -114.59 71.85 5 A ASP 32 57.18 -88.74 5 A GLN 42 60.58 72.83 5 A ASN 67 71.76 72.52 5 A GLU 71 71.62 31.14 5 A ASN 110 77.24 72.45 5 A TYR 139 -176.12 133.19 5 A THR 143 -42.24 158.72 6 A ASP 32 51.65 -90.49 6 A ARG 33 -140.15 16.36 6 A GLN 42 62.44 73.23 6 A GLU 71 84.07 22.00 6 A ASP 85 -60.64 90.26 6 A ILE 86 -96.27 32.03 6 A LEU 94 -74.47 -81.10 6 A GLU 95 33.32 74.08 6 A SER 105 -129.57 -164.56 6 A ASN 107 -90.52 -66.02 6 A SER 128 83.37 2.34 6 A ASP 138 -68.20 96.71 6 A TYR 139 -175.09 121.25 6 A THR 143 -44.08 150.20 6 B GLU 3 -110.99 78.94 7 A ASP 32 40.99 -84.70 7 A ARG 33 -143.92 21.51 7 A GLN 42 53.68 70.30 7 A ASN 67 80.43 3.36 7 A LEU 94 -66.98 -71.19 7 A GLU 95 59.23 70.88 7 A SER 105 -135.89 -159.08 7 A SER 128 82.76 1.60 7 A TYR 139 -171.89 127.27 7 A THR 143 -41.37 152.99 8 A ASP 32 44.70 -90.02 8 A GLN 42 60.25 70.72 8 A ASN 50 56.70 12.57 8 A PRO 65 -45.71 -10.54 8 A ASP 85 -67.42 81.56 8 A LEU 94 -65.23 -73.16 8 A HIS 104 -141.19 49.38 8 A SER 105 -106.49 -163.15 8 A ASN 110 58.97 72.33 8 A ILE 124 -133.16 -159.25 8 A SER 128 87.18 7.85 8 A THR 143 -45.35 152.30 8 A THR 153 -64.17 98.31 9 A LYS 13 -98.59 -61.63 9 A THR 20 -105.74 -163.48 9 A ASP 32 46.78 -86.26 9 A GLN 42 65.22 72.15 9 A PRO 65 -52.59 -8.16 9 A GLU 95 36.61 71.80 9 A SER 105 -108.90 -161.18 9 A ASN 107 -78.01 -76.69 9 A ASN 110 80.82 -2.20 9 A SER 128 81.84 -10.46 9 A THR 143 -37.60 150.20 9 A LYS 175 -35.71 -36.23 10 A ASP 32 54.02 -94.27 10 A HIS 40 -69.06 9.41 10 A GLN 42 61.37 72.90 10 A ASN 50 70.75 -9.57 10 A ASP 58 -171.48 147.83 10 A ASN 67 71.65 66.27 10 A GLU 95 38.20 72.00 10 A HIS 104 -150.49 71.96 10 A SER 105 -143.16 -150.32 10 A SER 128 74.18 -0.07 10 A TYR 139 -174.08 137.96 10 A ALA 140 -62.38 96.20 10 A THR 143 -42.48 152.10 10 A LYS 155 -162.66 113.75 11 A ASP 32 56.25 -94.36 11 A ARG 33 -143.52 20.25 11 A GLN 42 48.27 72.10 11 A ASN 67 64.02 68.36 11 A LEU 94 -56.34 -71.36 11 A SER 105 -124.24 -162.68 11 A ASN 110 38.61 62.90 11 A SER 128 82.99 66.66 11 A PRO 130 -58.35 109.96 11 A TYR 139 -178.20 119.93 11 A THR 143 -38.91 155.47 11 B GLU 3 -108.07 76.37 12 A THR 20 -109.27 -163.57 12 A ASP 32 45.97 -92.30 12 A ARG 33 -142.55 19.87 12 A GLN 42 68.01 72.87 12 A PRO 65 -49.61 -18.49 12 A ASP 85 -68.56 95.16 12 A LEU 94 -75.66 -71.49 12 A GLU 95 49.47 72.16 12 A SER 105 -118.40 -166.98 12 A ASN 110 70.40 34.54 12 A TYR 139 -171.49 134.28 12 A THR 143 -37.58 158.83 13 A HIS 31 -171.88 146.78 13 A ASP 32 50.28 -86.60 13 A GLN 42 55.71 72.50 13 A ASN 50 45.74 28.36 13 A ASN 67 73.11 30.97 13 A GLU 95 56.57 70.87 13 A HIS 104 -146.36 59.62 13 A ASN 110 64.01 71.80 13 A SER 128 86.10 -11.24 13 A TYR 139 -179.71 132.05 13 A THR 143 -42.18 153.68 13 B GLU 3 -109.99 74.21 14 A HIS 31 -171.95 149.17 14 A ASP 32 54.06 -87.47 14 A GLN 42 59.14 71.64 14 A ASN 67 64.06 68.18 14 A ASP 85 -59.86 86.07 14 A LEU 94 -64.72 -76.47 14 A GLU 95 51.43 70.82 14 A ASN 110 76.29 74.48 14 A SER 128 80.16 1.23 14 A TYR 139 -171.02 127.90 14 A THR 143 -40.59 161.85 15 A ASN 14 -145.80 -38.32 15 A ASP 32 56.89 -78.35 15 A GLN 42 50.10 72.83 15 A ASN 50 73.82 -10.10 15 A PRO 65 -43.72 -17.13 15 A GLU 95 47.04 71.68 15 A ASN 110 60.55 70.83 15 A TYR 139 -170.11 126.16 15 A THR 143 -38.86 156.93 15 A LYS 175 -39.67 -39.96 16 A ASP 32 43.72 -92.34 16 A GLN 42 68.41 72.32 16 A ASN 67 63.76 61.59 16 A ASP 85 -66.57 99.46 16 A LEU 94 -103.40 -68.61 16 A VAL 97 -73.50 20.99 16 A SER 105 -109.51 -162.44 16 A ASN 110 79.18 72.42 16 A THR 119 -160.21 114.89 16 A SER 128 82.10 -1.55 16 A THR 143 -44.03 152.61 16 A PHE 157 -103.06 -71.21 16 B GLU 3 -119.43 78.05 17 A ASP 32 51.71 -91.83 17 A ASN 67 60.75 62.06 17 A GLU 71 85.96 7.26 17 A LEU 94 -90.57 -78.82 17 A GLU 95 49.70 70.31 17 A HIS 104 -145.71 41.65 17 A SER 105 -108.35 -164.90 17 A ASN 110 66.43 71.47 17 A SER 128 85.67 0.52 17 A TYR 139 -175.06 129.84 17 A ALA 140 -69.13 96.04 17 A THR 143 -41.19 153.73 18 A HIS 31 -171.83 149.93 18 A ASP 32 46.49 -95.27 18 A GLN 42 56.90 70.18 18 A ASN 67 60.65 64.12 18 A GLU 71 85.81 7.94 18 A GLU 95 46.58 71.79 18 A SER 128 84.31 -10.49 18 A THR 143 -38.77 150.00 18 A THR 153 -55.44 107.98 18 B GLU 3 -118.22 77.11 19 A ASP 32 57.32 -94.23 19 A GLN 42 64.98 69.51 19 A GLU 71 80.70 9.03 19 A ASP 85 -69.94 80.93 19 A GLU 95 60.70 69.25 19 A SER 105 -108.78 -165.42 19 A ASN 110 74.03 70.45 19 A SER 128 70.56 62.49 19 A THR 129 -160.80 115.27 19 A ARG 133 70.88 34.82 19 A THR 143 -44.22 154.22 20 A THR 20 -102.81 -169.73 20 A ASP 32 45.14 -92.20 20 A ARG 33 -141.59 25.75 20 A GLN 42 66.61 70.95 20 A PRO 65 -44.72 -17.62 20 A ASN 67 72.21 30.21 20 A GLU 71 87.13 4.35 20 A ASP 85 -66.26 91.55 20 A LEU 94 -55.62 -70.18 20 A GLU 95 50.61 71.27 20 A ASN 110 73.36 72.20 20 A PRO 117 -58.02 107.29 20 A ALA 140 -66.30 99.41 20 A THR 143 -38.70 150.75 NMR Structure of the Human Rhinovirus 3C Protease (serotype 14) with covalently bound Ace-LEALFQ-ethylpropionate inhibitor 1 N N 2 N N A GLY 1 A GLY 1 HELX_P A ASN 14 A ASN 14 1 1 14 A ASP 85 A ASP 85 HELX_P A ILE 90 A ILE 90 5 2 6 A LYS 174 A LYS 174 HELX_P A VAL 179 A VAL 179 1 3 6 covale 1.820 one A CYS 146 A SG CYS 146 1_555 B YTF 7 B C YTF 7 1_555 covale 1.317 both B ACE 1 B C ACE 1 1_555 B LEU 2 B N LEU 2 1_555 covale 1.328 both B PHE 6 B C PHE 6 1_555 B YTF 7 B N YTF 7 1_555 HYDROLASE/HYDROLASE INHIBITOR BETA BARREL, HYDROLASE-HYDROLASE INHIBITOR COMPLEX POLG_HRV14 UNP 1 1538 P03303 GPNTEFALSLLRKNIMTITTSKGEFTGLGIHDRVCVIPTHAQPGDDVLVNGQKIRVKDKYKLVDPENINLELTVLTLDRN EKFRDIRGFISEDLEGVDATLVVHSNNFTNTILEVGPVTMAGLINLSSTPTNRMIRYDYATKTGQCGGVLCATGKIFGIH VGGNGRQGFSAQLKKQYFVEKQ 2B0F PDB 2 1 2B0F 1538 1719 2B0F 1 182 P03303 A 1 1 182 1 7 2B0F 1 7 2B0F B 2 1 7 7 10 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ILE 15 A ILE 15 A THR 19 A THR 19 A GLU 24 A GLU 24 A HIS 31 A HIS 31 A VAL 34 A VAL 34 A ILE 37 A ILE 37 A ILE 68 A ILE 68 A ASP 78 A ASP 78 A GLN 52 A GLN 52 A ASP 64 A ASP 64 A ASP 46 A ASP 46 A VAL 49 A VAL 49 A ILE 15 A ILE 15 A THR 19 A THR 19 A THR 111 A THR 111 A LEU 126 A LEU 126 A PRO 130 A PRO 130 A ASP 138 A ASP 138 A GLN 167 A GLN 167 A GLN 172 A GLN 172 A LYS 155 A LYS 155 A ASN 164 A ASN 164 A THR 111 A THR 111 A LEU 126 A LEU 126 A ASP 98 A ASP 98 A VAL 103 A VAL 103 A VAL 149 A VAL 149 A ALA 152 A ALA 152 A LYS 155 A LYS 155 A ASN 164 A ASN 164 B GLU 3 B GLU 3 B PHE 6 B PHE 6 A LYS 155 A LYS 155 A ASN 164 A ASN 164 BINDING SITE FOR CHAIN B OF ACE-LEALFQ-ETHYLPROPIONATE Software 19 A LYS 22 A LYS 22 19 1_555 A HIS 40 A HIS 40 19 1_555 A GLU 71 A GLU 71 19 1_555 A ILE 124 A ILE 124 19 1_555 A ASN 125 A ASN 125 19 1_555 A LEU 126 A LEU 126 19 1_555 A SER 127 A SER 127 19 1_555 A SER 128 A SER 128 19 1_555 A THR 141 A THR 141 19 1_555 A LYS 142 A LYS 142 19 1_555 A THR 143 A THR 143 19 1_555 A GLY 144 A GLY 144 19 1_555 A CYS 146 A CYS 146 19 1_555 A HIS 160 A HIS 160 19 1_555 A VAL 161 A VAL 161 19 1_555 A GLY 162 A GLY 162 19 1_555 A GLY 163 A GLY 163 19 1_555 A ASN 164 A ASN 164 19 1_555 A PHE 169 A PHE 169 19 1_555 1 P 1