0.007323 0.000000 0.000000 0.000000 0.007323 0.000000 0.000000 0.000000 0.014384 0.00000 0.00000 0.00000 Schindelin, H. Tian, G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 136.560 136.560 69.524 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Ba 2 137.327 BARIUM ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Cell(Cambridge,Mass.) CELLB5 0998 0092-8674 124 61 73 10.1016/j.cell.2005.10.044 16413482 The crystal structure of yeast protein disulfide isomerase suggests cooperativity between its active sites. 2006 100 1 CCD 2005-01-25 ADSC QUANTUM 315 1.1 SINGLE WAVELENGTH M x-ray 1 1.1 1.0 X25 NSLS 1.1 SYNCHROTRON NSLS BEAMLINE X25 56421.613 Protein disulfide-isomerase 5.3.4.1 1 man polymer 137.327 BARIUM ION 1 syn non-polymer 92.094 GLYCEROL 2 syn non-polymer 18.015 water 138 nat water PDI, Thioredoxin-related glycoprotein 1 no no AGHMQQEAVAPEDSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCM EHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQPAVAVVADLPAYLANETFVTPVIVQSGKIDADFNATFY SMANKHFNDYDFVSAENADDDFKLSIYLPSAMDEPVVYNGKKADIADADVFEKWLQVEALPYFGEIDGSVFAQYVESGLP LGYLFYNDEEELEEYKPLFTELAKKNRGLMNFVSIDARKFGRHAGNLNMKEQFPLFAIHDMTEDLKYGLPQLSEEAFDEL SDKIVLESKAIESLVKDFLKGDASPIVKSQEIFENQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQE LADTYANATSDVLIAKLDHTENDVRGVVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKENGHFDVDGKALYEEAQ EKAAEEADADAELADEEDAIHDEL AGHMQQEAVAPEDSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCM EHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQPAVAVVADLPAYLANETFVTPVIVQSGKIDADFNATFY SMANKHFNDYDFVSAENADDDFKLSIYLPSAMDEPVVYNGKKADIADADVFEKWLQVEALPYFGEIDGSVFAQYVESGLP LGYLFYNDEEELEEYKPLFTELAKKNRGLMNFVSIDARKFGRHAGNLNMKEQFPLFAIHDMTEDLKYGLPQLSEEAFDEL SDKIVLESKAIESLVKDFLKGDASPIVKSQEIFENQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQE LADTYANATSDVLIAKLDHTENDVRGVVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKENGHFDVDGKALYEEAQ EKAAEEADADAELADEEDAIHDEL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n baker's yeast Saccharomyces Escherichia Escherichia coli sample PDI1, MFP1, TRG1 4932 Saccharomyces cerevisiae 511693 Escherichia coli BL21 BL21 PLASMID pTYB12 1 2.87 57.16 VAPOR DIFFUSION, HANGING DROP 6.5 sodium cacodylate, magnesium chloride, PEG 2000 MME, barium chloride, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K 277 repository Initial release Version format compliance Advisory Version format compliance 1 0 2006-01-24 1 1 2008-05-01 1 2 2011-07-13 NMR structure of human PDI domain a NMR structure of human PDI domain b Crystal Structure of E.coli Thioredoxin Crystal Structure of E.coli Protein Disulfide Isomerase DsbC Crystal Structure of E.coli Protein Disulfide Isomerase DsbG Crystal Structure of Calsequestrin RCSB Y RCSB 2005-09-28 REL REL BA BARIUM ION GOL GLYCEROL HOH water BA 1 2 BA BA 1 A GOL 146 3 GOL GOL 523 A GOL 147 3 GOL GOL 524 A HOH 2 4 HOH HOH 525 A HOH 3 4 HOH HOH 526 A HOH 4 4 HOH HOH 527 A HOH 5 4 HOH HOH 528 A HOH 6 4 HOH HOH 529 A HOH 7 4 HOH HOH 530 A HOH 8 4 HOH HOH 531 A HOH 9 4 HOH HOH 532 A HOH 10 4 HOH HOH 533 A HOH 11 4 HOH HOH 534 A HOH 12 4 HOH HOH 535 A HOH 13 4 HOH HOH 536 A HOH 14 4 HOH HOH 537 A HOH 15 4 HOH HOH 538 A HOH 16 4 HOH HOH 539 A HOH 17 4 HOH HOH 540 A HOH 18 4 HOH HOH 541 A HOH 19 4 HOH HOH 542 A HOH 20 4 HOH HOH 543 A HOH 21 4 HOH HOH 544 A HOH 22 4 HOH HOH 545 A HOH 23 4 HOH HOH 546 A HOH 24 4 HOH HOH 547 A HOH 25 4 HOH HOH 548 A HOH 26 4 HOH HOH 549 A HOH 27 4 HOH HOH 550 A HOH 28 4 HOH HOH 551 A HOH 29 4 HOH HOH 552 A HOH 30 4 HOH HOH 553 A HOH 31 4 HOH HOH 554 A HOH 32 4 HOH HOH 555 A HOH 33 4 HOH HOH 556 A HOH 34 4 HOH HOH 557 A HOH 35 4 HOH HOH 558 A HOH 36 4 HOH HOH 559 A HOH 37 4 HOH HOH 560 A HOH 38 4 HOH HOH 561 A HOH 39 4 HOH HOH 562 A HOH 40 4 HOH HOH 563 A HOH 41 4 HOH HOH 564 A HOH 42 4 HOH HOH 565 A HOH 43 4 HOH HOH 566 A HOH 44 4 HOH HOH 567 A HOH 45 4 HOH HOH 568 A HOH 46 4 HOH HOH 569 A HOH 47 4 HOH HOH 570 A HOH 48 4 HOH HOH 571 A HOH 49 4 HOH HOH 572 A HOH 50 4 HOH HOH 573 A HOH 51 4 HOH HOH 574 A HOH 52 4 HOH HOH 575 A HOH 53 4 HOH HOH 576 A HOH 54 4 HOH HOH 577 A HOH 55 4 HOH HOH 578 A HOH 56 4 HOH HOH 579 A HOH 57 4 HOH HOH 580 A HOH 58 4 HOH HOH 581 A HOH 59 4 HOH HOH 582 A HOH 60 4 HOH HOH 583 A HOH 61 4 HOH HOH 584 A HOH 62 4 HOH HOH 585 A HOH 63 4 HOH HOH 586 A HOH 64 4 HOH HOH 587 A HOH 66 4 HOH HOH 588 A HOH 67 4 HOH HOH 589 A HOH 68 4 HOH HOH 590 A HOH 69 4 HOH HOH 591 A HOH 70 4 HOH HOH 592 A HOH 71 4 HOH HOH 593 A HOH 72 4 HOH HOH 594 A HOH 73 4 HOH HOH 595 A HOH 74 4 HOH HOH 596 A HOH 75 4 HOH HOH 597 A HOH 76 4 HOH HOH 598 A HOH 77 4 HOH HOH 599 A HOH 78 4 HOH HOH 600 A HOH 79 4 HOH HOH 601 A HOH 80 4 HOH HOH 602 A HOH 81 4 HOH HOH 603 A HOH 82 4 HOH HOH 604 A HOH 83 4 HOH HOH 605 A HOH 84 4 HOH HOH 606 A HOH 85 4 HOH HOH 607 A HOH 86 4 HOH HOH 608 A HOH 87 4 HOH HOH 609 A HOH 88 4 HOH HOH 610 A HOH 89 4 HOH HOH 611 A HOH 90 4 HOH HOH 612 A HOH 91 4 HOH HOH 613 A HOH 92 4 HOH HOH 614 A HOH 93 4 HOH HOH 615 A HOH 94 4 HOH HOH 616 A HOH 95 4 HOH HOH 617 A HOH 96 4 HOH HOH 618 A HOH 97 4 HOH HOH 619 A HOH 98 4 HOH HOH 620 A HOH 99 4 HOH HOH 621 A HOH 100 4 HOH HOH 622 A HOH 101 4 HOH HOH 623 A HOH 102 4 HOH HOH 624 A HOH 103 4 HOH HOH 625 A HOH 104 4 HOH HOH 626 A HOH 106 4 HOH HOH 627 A HOH 107 4 HOH HOH 628 A HOH 108 4 HOH HOH 629 A HOH 109 4 HOH HOH 630 A HOH 110 4 HOH HOH 631 A HOH 111 4 HOH HOH 632 A HOH 112 4 HOH HOH 633 A HOH 113 4 HOH HOH 634 A HOH 114 4 HOH HOH 635 A HOH 115 4 HOH HOH 636 A HOH 116 4 HOH HOH 637 A HOH 117 4 HOH HOH 638 A HOH 118 4 HOH HOH 639 A HOH 119 4 HOH HOH 640 A HOH 120 4 HOH HOH 641 A HOH 121 4 HOH HOH 642 A HOH 122 4 HOH HOH 643 A HOH 123 4 HOH HOH 644 A HOH 124 4 HOH HOH 645 A HOH 125 4 HOH HOH 646 A HOH 126 4 HOH HOH 647 A HOH 127 4 HOH HOH 648 A HOH 128 4 HOH HOH 649 A HOH 129 4 HOH HOH 650 A HOH 130 4 HOH HOH 651 A HOH 131 4 HOH HOH 652 A HOH 132 4 HOH HOH 653 A HOH 134 4 HOH HOH 654 A HOH 137 4 HOH HOH 655 A HOH 139 4 HOH HOH 656 A HOH 140 4 HOH HOH 657 A HOH 141 4 HOH HOH 658 A HOH 142 4 HOH HOH 659 A HOH 143 4 HOH HOH 660 A HOH 144 4 HOH HOH 661 A HOH 145 4 HOH HOH 662 A n 1 19 A n 2 20 A n 3 21 A MET 22 n 4 MET 22 A GLN 23 n 5 GLN 23 A GLN 24 n 6 GLN 24 A GLU 25 n 7 GLU 25 A ALA 26 n 8 ALA 26 A VAL 27 n 9 VAL 27 A ALA 28 n 10 ALA 28 A PRO 29 n 11 PRO 29 A GLU 30 n 12 GLU 30 A ASP 31 n 13 ASP 31 A SER 32 n 14 SER 32 A ALA 33 n 15 ALA 33 A VAL 34 n 16 VAL 34 A VAL 35 n 17 VAL 35 A LYS 36 n 18 LYS 36 A LEU 37 n 19 LEU 37 A ALA 38 n 20 ALA 38 A THR 39 n 21 THR 39 A ASP 40 n 22 ASP 40 A SER 41 n 23 SER 41 A PHE 42 n 24 PHE 42 A ASN 43 n 25 ASN 43 A GLU 44 n 26 GLU 44 A TYR 45 n 27 TYR 45 A ILE 46 n 28 ILE 46 A GLN 47 n 29 GLN 47 A SER 48 n 30 SER 48 A HIS 49 n 31 HIS 49 A ASP 50 n 32 ASP 50 A LEU 51 n 33 LEU 51 A VAL 52 n 34 VAL 52 A LEU 53 n 35 LEU 53 A ALA 54 n 36 ALA 54 A GLU 55 n 37 GLU 55 A PHE 56 n 38 PHE 56 A PHE 57 n 39 PHE 57 A ALA 58 n 40 ALA 58 A PRO 59 n 41 PRO 59 A TRP 60 n 42 TRP 60 A CYS 61 n 43 CYS 61 A GLY 62 n 44 GLY 62 A HIS 63 n 45 HIS 63 A CYS 64 n 46 CYS 64 A LYS 65 n 47 LYS 65 A ASN 66 n 48 ASN 66 A MET 67 n 49 MET 67 A ALA 68 n 50 ALA 68 A PRO 69 n 51 PRO 69 A GLU 70 n 52 GLU 70 A TYR 71 n 53 TYR 71 A VAL 72 n 54 VAL 72 A LYS 73 n 55 LYS 73 A ALA 74 n 56 ALA 74 A ALA 75 n 57 ALA 75 A GLU 76 n 58 GLU 76 A THR 77 n 59 THR 77 A LEU 78 n 60 LEU 78 A VAL 79 n 61 VAL 79 A GLU 80 n 62 GLU 80 A LYS 81 n 63 LYS 81 A ASN 82 n 64 ASN 82 A ILE 83 n 65 ILE 83 A THR 84 n 66 THR 84 A LEU 85 n 67 LEU 85 A ALA 86 n 68 ALA 86 A GLN 87 n 69 GLN 87 A ILE 88 n 70 ILE 88 A ASP 89 n 71 ASP 89 A CYS 90 n 72 CYS 90 A THR 91 n 73 THR 91 A GLU 92 n 74 GLU 92 A ASN 93 n 75 ASN 93 A GLN 94 n 76 GLN 94 A ASP 95 n 77 ASP 95 A LEU 96 n 78 LEU 96 A CYS 97 n 79 CYS 97 A MET 98 n 80 MET 98 A GLU 99 n 81 GLU 99 A HIS 100 n 82 HIS 100 A ASN 101 n 83 ASN 101 A ILE 102 n 84 ILE 102 A PRO 103 n 85 PRO 103 A GLY 104 n 86 GLY 104 A PHE 105 n 87 PHE 105 A PRO 106 n 88 PRO 106 A SER 107 n 89 SER 107 A LEU 108 n 90 LEU 108 A LYS 109 n 91 LYS 109 A ILE 110 n 92 ILE 110 A PHE 111 n 93 PHE 111 A LYS 112 n 94 LYS 112 A ASN 113 n 95 ASN 113 A SER 114 n 96 SER 114 A ASP 115 n 97 ASP 115 A VAL 116 n 98 VAL 116 A ASN 117 n 99 ASN 117 A ASN 118 n 100 ASN 118 A SER 119 n 101 SER 119 A ILE 120 n 102 ILE 120 A ASP 121 n 103 ASP 121 A TYR 122 n 104 TYR 122 A GLU 123 n 105 GLU 123 A GLY 124 n 106 GLY 124 A PRO 125 n 107 PRO 125 A ARG 126 n 108 ARG 126 A THR 127 n 109 THR 127 A ALA 128 n 110 ALA 128 A GLU 129 n 111 GLU 129 A ALA 130 n 112 ALA 130 A ILE 131 n 113 ILE 131 A VAL 132 n 114 VAL 132 A GLN 133 n 115 GLN 133 A PHE 134 n 116 PHE 134 A MET 135 n 117 MET 135 A ILE 136 n 118 ILE 136 A LYS 137 n 119 LYS 137 A GLN 138 n 120 GLN 138 A SER 139 n 121 SER 139 A GLN 140 n 122 GLN 140 A PRO 141 n 123 PRO 141 A ALA 142 n 124 ALA 142 A VAL 143 n 125 VAL 143 A ALA 144 n 126 ALA 144 A VAL 145 n 127 VAL 145 A VAL 146 n 128 VAL 146 A ALA 147 n 129 ALA 147 A ASP 148 n 130 ASP 148 A LEU 149 n 131 LEU 149 A PRO 150 n 132 PRO 150 A ALA 151 n 133 ALA 151 A TYR 152 n 134 TYR 152 A LEU 153 n 135 LEU 153 A ALA 154 n 136 ALA 154 A ASN 155 n 137 ASN 155 A GLU 156 n 138 GLU 156 A THR 157 n 139 THR 157 A PHE 158 n 140 PHE 158 A VAL 159 n 141 VAL 159 A THR 160 n 142 THR 160 A PRO 161 n 143 PRO 161 A VAL 162 n 144 VAL 162 A ILE 163 n 145 ILE 163 A VAL 164 n 146 VAL 164 A GLN 165 n 147 GLN 165 A SER 166 n 148 SER 166 A GLY 167 n 149 GLY 167 A LYS 168 n 150 LYS 168 A ILE 169 n 151 ILE 169 A ASP 170 n 152 ASP 170 A ALA 171 n 153 ALA 171 A ASP 172 n 154 ASP 172 A PHE 173 n 155 PHE 173 A ASN 174 n 156 ASN 174 A ALA 175 n 157 ALA 175 A THR 176 n 158 THR 176 A PHE 177 n 159 PHE 177 A TYR 178 n 160 TYR 178 A SER 179 n 161 SER 179 A MET 180 n 162 MET 180 A ALA 181 n 163 ALA 181 A ASN 182 n 164 ASN 182 A LYS 183 n 165 LYS 183 A HIS 184 n 166 HIS 184 A PHE 185 n 167 PHE 185 A ASN 186 n 168 ASN 186 A ASP 187 n 169 ASP 187 A TYR 188 n 170 TYR 188 A ASP 189 n 171 ASP 189 A PHE 190 n 172 PHE 190 A VAL 191 n 173 VAL 191 A SER 192 n 174 SER 192 A ALA 193 n 175 ALA 193 A GLU 194 n 176 GLU 194 A ASN 195 n 177 ASN 195 A ALA 196 n 178 ALA 196 A ASP 197 n 179 ASP 197 A ASP 198 n 180 ASP 198 A ASP 199 n 181 ASP 199 A PHE 200 n 182 PHE 200 A LYS 201 n 183 LYS 201 A LEU 202 n 184 LEU 202 A SER 203 n 185 SER 203 A ILE 204 n 186 ILE 204 A TYR 205 n 187 TYR 205 A LEU 206 n 188 LEU 206 A PRO 207 n 189 PRO 207 A SER 208 n 190 SER 208 A ALA 209 n 191 ALA 209 A MET 210 n 192 MET 210 A ASP 211 n 193 ASP 211 A GLU 212 n 194 GLU 212 A PRO 213 n 195 PRO 213 A VAL 214 n 196 VAL 214 A VAL 215 n 197 VAL 215 A TYR 216 n 198 TYR 216 A ASN 217 n 199 ASN 217 A GLY 218 n 200 GLY 218 A LYS 219 n 201 LYS 219 A LYS 220 n 202 LYS 220 A ALA 221 n 203 ALA 221 A ASP 222 n 204 ASP 222 A ILE 223 n 205 ILE 223 A ALA 224 n 206 ALA 224 A ASP 225 n 207 ASP 225 A ALA 226 n 208 ALA 226 A ASP 227 n 209 ASP 227 A VAL 228 n 210 VAL 228 A PHE 229 n 211 PHE 229 A GLU 230 n 212 GLU 230 A LYS 231 n 213 LYS 231 A TRP 232 n 214 TRP 232 A LEU 233 n 215 LEU 233 A GLN 234 n 216 GLN 234 A VAL 235 n 217 VAL 235 A GLU 236 n 218 GLU 236 A ALA 237 n 219 ALA 237 A LEU 238 n 220 LEU 238 A PRO 239 n 221 PRO 239 A TYR 240 n 222 TYR 240 A PHE 241 n 223 PHE 241 A GLY 242 n 224 GLY 242 A GLU 243 n 225 GLU 243 A ILE 244 n 226 ILE 244 A ASP 245 n 227 ASP 245 A GLY 246 n 228 GLY 246 A SER 247 n 229 SER 247 A VAL 248 n 230 VAL 248 A PHE 249 n 231 PHE 249 A ALA 250 n 232 ALA 250 A GLN 251 n 233 GLN 251 A TYR 252 n 234 TYR 252 A VAL 253 n 235 VAL 253 A GLU 254 n 236 GLU 254 A SER 255 n 237 SER 255 A GLY 256 n 238 GLY 256 A LEU 257 n 239 LEU 257 A PRO 258 n 240 PRO 258 A LEU 259 n 241 LEU 259 A GLY 260 n 242 GLY 260 A TYR 261 n 243 TYR 261 A LEU 262 n 244 LEU 262 A PHE 263 n 245 PHE 263 A TYR 264 n 246 TYR 264 A ASN 265 n 247 ASN 265 A ASP 266 n 248 ASP 266 A GLU 267 n 249 GLU 267 A GLU 268 n 250 GLU 268 A GLU 269 n 251 GLU 269 A LEU 270 n 252 LEU 270 A GLU 271 n 253 GLU 271 A GLU 272 n 254 GLU 272 A TYR 273 n 255 TYR 273 A LYS 274 n 256 LYS 274 A PRO 275 n 257 PRO 275 A LEU 276 n 258 LEU 276 A PHE 277 n 259 PHE 277 A THR 278 n 260 THR 278 A GLU 279 n 261 GLU 279 A LEU 280 n 262 LEU 280 A ALA 281 n 263 ALA 281 A LYS 282 n 264 LYS 282 A LYS 283 n 265 LYS 283 A ASN 284 n 266 ASN 284 A ARG 285 n 267 ARG 285 A GLY 286 n 268 GLY 286 A LEU 287 n 269 LEU 287 A MET 288 n 270 MET 288 A ASN 289 n 271 ASN 289 A PHE 290 n 272 PHE 290 A VAL 291 n 273 VAL 291 A SER 292 n 274 SER 292 A ILE 293 n 275 ILE 293 A ASP 294 n 276 ASP 294 A ALA 295 n 277 ALA 295 A ARG 296 n 278 ARG 296 A LYS 297 n 279 LYS 297 A PHE 298 n 280 PHE 298 A GLY 299 n 281 GLY 299 A ARG 300 n 282 ARG 300 A HIS 301 n 283 HIS 301 A ALA 302 n 284 ALA 302 A GLY 303 n 285 GLY 303 A ASN 304 n 286 ASN 304 A LEU 305 n 287 LEU 305 A ASN 306 n 288 ASN 306 A MET 307 n 289 MET 307 A LYS 308 n 290 LYS 308 A GLU 309 n 291 GLU 309 A GLN 310 n 292 GLN 310 A PHE 311 n 293 PHE 311 A PRO 312 n 294 PRO 312 A LEU 313 n 295 LEU 313 A PHE 314 n 296 PHE 314 A ALA 315 n 297 ALA 315 A ILE 316 n 298 ILE 316 A HIS 317 n 299 HIS 317 A ASP 318 n 300 ASP 318 A MET 319 n 301 MET 319 A THR 320 n 302 THR 320 A GLU 321 n 303 GLU 321 A ASP 322 n 304 ASP 322 A LEU 323 n 305 LEU 323 A LYS 324 n 306 LYS 324 A TYR 325 n 307 TYR 325 A GLY 326 n 308 GLY 326 A LEU 327 n 309 LEU 327 A PRO 328 n 310 PRO 328 A GLN 329 n 311 GLN 329 A LEU 330 n 312 LEU 330 A SER 331 n 313 SER 331 A GLU 332 n 314 GLU 332 A GLU 333 n 315 GLU 333 A ALA 334 n 316 ALA 334 A PHE 335 n 317 PHE 335 A ASP 336 n 318 ASP 336 A GLU 337 n 319 GLU 337 A LEU 338 n 320 LEU 338 A SER 339 n 321 SER 339 A ASP 340 n 322 ASP 340 A LYS 341 n 323 LYS 341 A ILE 342 n 324 ILE 342 A VAL 343 n 325 VAL 343 A LEU 344 n 326 LEU 344 A GLU 345 n 327 GLU 345 A SER 346 n 328 SER 346 A LYS 347 n 329 LYS 347 A ALA 348 n 330 ALA 348 A ILE 349 n 331 ILE 349 A GLU 350 n 332 GLU 350 A SER 351 n 333 SER 351 A LEU 352 n 334 LEU 352 A VAL 353 n 335 VAL 353 A LYS 354 n 336 LYS 354 A ASP 355 n 337 ASP 355 A PHE 356 n 338 PHE 356 A LEU 357 n 339 LEU 357 A LYS 358 n 340 LYS 358 A GLY 359 n 341 GLY 359 A ASP 360 n 342 ASP 360 A ALA 361 n 343 ALA 361 A SER 362 n 344 SER 362 A PRO 363 n 345 PRO 363 A ILE 364 n 346 ILE 364 A VAL 365 n 347 VAL 365 A LYS 366 n 348 LYS 366 A SER 367 n 349 SER 367 A GLN 368 n 350 GLN 368 A GLU 369 n 351 GLU 369 A ILE 370 n 352 ILE 370 A PHE 371 n 353 PHE 371 A GLU 372 n 354 GLU 372 A ASN 373 n 355 ASN 373 A GLN 374 n 356 GLN 374 A ASP 375 n 357 ASP 375 A SER 376 n 358 SER 376 A SER 377 n 359 SER 377 A VAL 378 n 360 VAL 378 A PHE 379 n 361 PHE 379 A GLN 380 n 362 GLN 380 A LEU 381 n 363 LEU 381 A VAL 382 n 364 VAL 382 A GLY 383 n 365 GLY 383 A LYS 384 n 366 LYS 384 A ASN 385 n 367 ASN 385 A HIS 386 n 368 HIS 386 A ASP 387 n 369 ASP 387 A GLU 388 n 370 GLU 388 A ILE 389 n 371 ILE 389 A VAL 390 n 372 VAL 390 A ASN 391 n 373 ASN 391 A ASP 392 n 374 ASP 392 A PRO 393 n 375 PRO 393 A LYS 394 n 376 LYS 394 A LYS 395 n 377 LYS 395 A ASP 396 n 378 ASP 396 A VAL 397 n 379 VAL 397 A LEU 398 n 380 LEU 398 A VAL 399 n 381 VAL 399 A LEU 400 n 382 LEU 400 A TYR 401 n 383 TYR 401 A TYR 402 n 384 TYR 402 A ALA 403 n 385 ALA 403 A PRO 404 n 386 PRO 404 A TRP 405 n 387 TRP 405 A CYS 406 n 388 CYS 406 A GLY 407 n 389 GLY 407 A HIS 408 n 390 HIS 408 A CYS 409 n 391 CYS 409 A LYS 410 n 392 LYS 410 A ARG 411 n 393 ARG 411 A LEU 412 n 394 LEU 412 A ALA 413 n 395 ALA 413 A PRO 414 n 396 PRO 414 A THR 415 n 397 THR 415 A TYR 416 n 398 TYR 416 A GLN 417 n 399 GLN 417 A GLU 418 n 400 GLU 418 A LEU 419 n 401 LEU 419 A ALA 420 n 402 ALA 420 A ASP 421 n 403 ASP 421 A THR 422 n 404 THR 422 A TYR 423 n 405 TYR 423 A ALA 424 n 406 ALA 424 A ASN 425 n 407 ASN 425 A ALA 426 n 408 ALA 426 A THR 427 n 409 THR 427 A SER 428 n 410 SER 428 A ASP 429 n 411 ASP 429 A VAL 430 n 412 VAL 430 A LEU 431 n 413 LEU 431 A ILE 432 n 414 ILE 432 A ALA 433 n 415 ALA 433 A LYS 434 n 416 LYS 434 A LEU 435 n 417 LEU 435 A ASP 436 n 418 ASP 436 A HIS 437 n 419 HIS 437 A THR 438 n 420 THR 438 A GLU 439 n 421 GLU 439 A ASN 440 n 422 ASN 440 A ASP 441 n 423 ASP 441 A VAL 442 n 424 VAL 442 A ARG 443 n 425 ARG 443 A GLY 444 n 426 GLY 444 A VAL 445 n 427 VAL 445 A VAL 446 n 428 VAL 446 A ILE 447 n 429 ILE 447 A GLU 448 n 430 GLU 448 A GLY 449 n 431 GLY 449 A TYR 450 n 432 TYR 450 A PRO 451 n 433 PRO 451 A THR 452 n 434 THR 452 A ILE 453 n 435 ILE 453 A VAL 454 n 436 VAL 454 A LEU 455 n 437 LEU 455 A TYR 456 n 438 TYR 456 A PRO 457 n 439 PRO 457 A GLY 458 n 440 GLY 458 A GLY 459 n 441 GLY 459 A LYS 460 n 442 LYS 460 A LYS 461 n 443 LYS 461 A SER 462 n 444 SER 462 A GLU 463 n 445 GLU 463 A SER 464 n 446 SER 464 A VAL 465 n 447 VAL 465 A VAL 466 n 448 VAL 466 A TYR 467 n 449 TYR 467 A GLN 468 n 450 GLN 468 A GLY 469 n 451 GLY 469 A SER 470 n 452 SER 470 A ARG 471 n 453 ARG 471 A SER 472 n 454 SER 472 A LEU 473 n 455 LEU 473 A ASP 474 n 456 ASP 474 A SER 475 n 457 SER 475 A LEU 476 n 458 LEU 476 A PHE 477 n 459 PHE 477 A ASP 478 n 460 ASP 478 A PHE 479 n 461 PHE 479 A ILE 480 n 462 ILE 480 A LYS 481 n 463 LYS 481 A GLU 482 n 464 GLU 482 A ASN 483 n 465 ASN 483 A GLY 484 n 466 GLY 484 A HIS 485 n 467 HIS 485 A PHE 486 n 468 PHE 486 A ASP 487 n 469 ASP 487 A VAL 488 n 470 VAL 488 A ASP 489 n 471 ASP 489 A GLY 490 n 472 GLY 490 A LYS 491 n 473 LYS 491 A ALA 492 n 474 ALA 492 A LEU 493 n 475 LEU 493 A TYR 494 n 476 TYR 494 A GLU 495 n 477 GLU 495 A GLU 496 n 478 GLU 496 A ALA 497 n 479 ALA 497 A GLN 498 n 480 GLN 498 A GLU 499 n 481 GLU 499 A LYS 500 n 482 LYS 500 A ALA 501 n 483 ALA 501 A ALA 502 n 484 ALA 502 A GLU 503 n 485 GLU 503 A GLU 504 n 486 GLU 504 A n 487 505 A n 488 506 A n 489 507 A n 490 508 A n 491 509 A n 492 510 A n 493 511 A n 494 512 A n 495 513 A n 496 514 A n 497 515 A n 498 516 A n 499 517 A n 500 518 A n 501 519 A n 502 520 A n 503 521 A n 504 522 A 8.8844 -2.0833 1.0110 5.9632 -0.6568 2.7540 -0.4718 -1.3245 -0.8277 0.8953 0.3606 0.3788 0.0827 0.1385 0.1112 -0.1320 0.1262 0.2122 -0.0167 0.2893 -0.2907 refined -15.4561 -23.4264 -17.8324 X-RAY DIFFRACTION 8.9068 2.5833 1.9947 5.0050 3.7088 6.3504 -0.0189 0.7753 -0.7368 -0.1626 0.0198 -0.4645 -0.0035 0.2078 -0.0008 -0.4190 0.0180 -0.0133 -0.2782 0.0291 -0.2974 refined 8.5068 -26.6276 -37.9761 X-RAY DIFFRACTION 16.8675 6.5502 5.7221 7.8991 3.5607 4.7174 -0.0571 0.0053 0.0834 -0.1265 0.0654 0.5012 0.1476 -0.0960 -0.0083 -0.3432 0.0020 -0.0005 -0.2007 -0.0344 -0.3170 refined -13.9766 -39.2351 -52.2311 X-RAY DIFFRACTION 6.4916 -0.8061 2.8933 12.0971 0.3148 6.9523 -0.1448 0.2168 -0.1727 -0.1748 0.0102 -1.0983 -0.9284 -0.2737 0.1346 0.0630 0.0751 -0.1721 -0.1283 -0.2744 0.1547 refined -41.5684 -16.9173 -63.2922 X-RAY DIFFRACTION A 22 A 4 A 139 A 121 X-RAY DIFFRACTION 1 ALL A 140 A 122 A 242 A 224 X-RAY DIFFRACTION 2 ALL A 243 A 225 A 365 A 347 X-RAY DIFFRACTION 3 ALL A 366 A 348 A 504 A 486 X-RAY DIFFRACTION 4 ALL author_defined_assembly 1 monomeric A GLU 194 A OE1 GLU 176 1_555 A BA 1 B BA BA 1_555 A GLU 194 A OE2 GLU 176 1_555 36.7 A GLU 194 A OE1 GLU 176 1_555 A BA 1 B BA BA 1_555 A HOH 599 E O HOH 3_555 47.8 A GLU 194 A OE2 GLU 176 1_555 A BA 1 B BA BA 1_555 A HOH 599 E O HOH 3_555 81.4 A GLU 194 A OE1 GLU 176 1_555 A BA 1 B BA BA 1_555 A HOH 555 E O HOH 3_555 63.0 A GLU 194 A OE2 GLU 176 1_555 A BA 1 B BA BA 1_555 A HOH 555 E O HOH 3_555 89.6 A HOH 599 E O HOH 3_555 A BA 1 B BA BA 1_555 A HOH 555 E O HOH 3_555 62.4 A GLU 194 A OE1 GLU 176 1_555 A BA 1 B BA BA 1_555 A GLU 123 A OE2 GLU 105 3_555 152.6 A GLU 194 A OE2 GLU 176 1_555 A BA 1 B BA BA 1_555 A GLU 123 A OE2 GLU 105 3_555 124.6 A HOH 599 E O HOH 3_555 A BA 1 B BA BA 1_555 A GLU 123 A OE2 GLU 105 3_555 128.0 A HOH 555 E O HOH 3_555 A BA 1 B BA BA 1_555 A GLU 123 A OE2 GLU 105 3_555 143.7 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N VAL 35 A N VAL 17 A O GLN 87 A O GLN 69 A O ILE 88 A O ILE 70 A N GLU 55 A N GLU 37 A N ALA 54 A N ALA 36 A O LYS 109 A O LYS 91 A N ILE 110 A N ILE 92 A O ILE 120 A O ILE 102 A N ALA 144 A N ALA 126 A O SER 192 A O SER 174 A O ASP 189 A O ASP 171 A N ILE 163 A N ILE 145 A N VAL 162 A N VAL 144 A O TYR 205 A O TYR 187 A N ILE 204 A N ILE 186 A O VAL 214 A O VAL 196 A O VAL 291 A O VAL 273 A N GLY 260 A N GLY 242 A N TYR 261 A N TYR 243 A O ALA 315 A O ALA 297 A N ASP 318 A N ASP 300 A O LEU 323 A O LEU 305 A N PHE 379 A N PHE 361 A O LYS 434 A O LYS 416 A O LEU 431 A O LEU 413 A N LEU 398 A N LEU 380 A N TYR 401 A N TYR 383 A O THR 452 A O THR 434 1 A ALA 19 A ALA 1 1 Y 1 A GLY 20 A GLY 2 1 Y 1 A HIS 21 A HIS 3 1 Y 1 A ALA 505 A ALA 487 1 Y 1 A ASP 506 A ASP 488 1 Y 1 A ALA 507 A ALA 489 1 Y 1 A ASP 508 A ASP 490 1 Y 1 A ALA 509 A ALA 491 1 Y 1 A GLU 510 A GLU 492 1 Y 1 A LEU 511 A LEU 493 1 Y 1 A ALA 512 A ALA 494 1 Y 1 A ASP 513 A ASP 495 1 Y 1 A GLU 514 A GLU 496 1 Y 1 A GLU 515 A GLU 497 1 Y 1 A ASP 516 A ASP 498 1 Y 1 A ALA 517 A ALA 499 1 Y 1 A ILE 518 A ILE 500 1 Y 1 A HIS 519 A HIS 501 1 Y 1 A ASP 520 A ASP 502 1 Y 1 A GLU 521 A GLU 503 1 Y 1 A LEU 522 A LEU 504 1 Y 1 A A ND2 O ASN HOH 373 644 1.67 1 A A OH O TYR SER 467 470 1.81 1 A A O N GLU VAL 463 465 2.02 1 A A O O HOH HOH 531 659 2.15 1 A A ASN GLY 217 218 -144.89 1 A A LYS ASP 395 396 123.44 1 4.25 0.50 120.30 124.55 A A A NE CZ NH1 ARG ARG ARG 471 471 471 N 1 A A CB OG SER SER 32 32 0.097 0.013 1.418 1.515 N 1 A A CB SG CYS CYS 97 97 0.146 0.017 1.818 1.964 N 1 A ALA 196 -56.45 -9.89 1 A GLU 212 -150.78 79.39 1 A LYS 219 -101.51 79.35 1 A ALA 237 -100.63 60.13 1 A PHE 241 -150.88 62.77 1 A ARG 300 -29.26 -50.81 1 A ASN 306 37.94 50.18 1 A ALA 361 157.23 132.36 1 A ASN 373 75.12 143.90 1 A ASP 375 -61.36 73.91 1 A TRP 405 -69.83 9.95 1 A SER 464 -31.99 47.20 1 A ARG 471 -84.91 36.12 1 A GLU 496 -47.61 -71.63 1 A ALA 502 -70.12 22.31 66.965 -1.750 0.000 0.000 -1.750 0.000 3.500 0.959 0.928 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.246 0.191 0.193 2.400 20.000 1246 23557 4.900 98.7 17.464 0.209 RANDOM LIKELY RESIDUAL 1 THROUGHOUT 0.00 MOLECULAR REPLACEMENT 0.329 0.246 0.800 0.800 1.200 MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 2.400 20.000 138 3971 13 0 3820 0.017 0.022 3923 0.002 0.020 3410 1.624 1.960 5321 0.883 3.000 8008 8.219 5.000 482 37.729 26.111 198 18.080 15.000 656 19.371 15.000 7 0.097 0.200 579 0.006 0.020 4405 0.001 0.020 751 0.223 0.200 872 0.186 0.200 3405 0.186 0.200 1884 0.091 0.200 2302 0.231 0.200 151 0.290 0.200 1 0.224 0.200 14 0.234 0.200 53 0.264 0.200 14 0.854 1.500 3079 0.145 1.500 969 1.093 2.000 3896 1.758 3.000 1783 2.700 4.500 1425 0.317 0.273 2.461 89 1623 1765 20 96.07 2.4 50 2B5E 24847 1 refinement Murshudov, G.N. ccp4@dl.ac.uk Fortran http://www.ccp4.ac.uk/main.html REFMAC program 5.2.0005 data extraction PDB sw-help@rcsb.rutgers.edu May. 30, 2005 C++ http://pdb.rutgers.edu/software/ PDB_EXTRACT package 1.700 data reduction HKL-2000 data scaling SCALEPACK phasing MOLREP Protein disulfide-isomerase (E.C.5.3.4.1) Crystal Structure of Yeast Protein Disulfide Isomerase 1 N N 2 N N 3 N N 3 N N 4 N N A SER 41 A SER 23 HELX_P A GLN 47 A GLN 29 1 1 7 A CYS 61 A CYS 43 HELX_P A LEU 78 A LEU 60 1 2 18 A ASN 93 A ASN 75 HELX_P A HIS 100 A HIS 82 1 3 8 A THR 127 A THR 109 HELX_P A SER 139 A SER 121 1 4 13 A ASP 148 A ASP 130 HELX_P A GLU 156 A GLU 138 1 5 9 A ASP 170 A ASP 152 HELX_P A HIS 184 A HIS 166 1 6 15 A LYS 219 A LYS 201 HELX_P A ALA 224 A ALA 206 1 7 6 A ASP 225 A ASP 207 HELX_P A ALA 237 A ALA 219 1 8 13 A ASP 245 A ASP 227 HELX_P A SER 255 A SER 237 1 9 11 A ASP 266 A ASP 248 HELX_P A ASN 284 A ASN 266 1 10 19 A ALA 295 A ALA 277 HELX_P A GLY 299 A GLY 281 1 11 5 A ARG 300 A ARG 282 HELX_P A LEU 305 A LEU 287 1 12 6 A SER 331 A SER 313 HELX_P A GLU 337 A GLU 319 1 13 7 A GLU 345 A GLU 327 HELX_P A GLY 359 A GLY 341 1 14 15 A ASN 385 A ASN 367 HELX_P A ASP 392 A ASP 374 1 15 8 A CYS 406 A CYS 388 HELX_P A THR 427 A THR 409 1 16 22 A THR 438 A THR 420 HELX_P A ASN 440 A ASN 422 5 17 3 A SER 472 A SER 454 HELX_P A GLY 484 A GLY 466 1 18 13 A ASP 489 A ASP 471 HELX_P A ALA 502 A ALA 484 1 19 14 disulf 2.115 A A A CYS 61 A SG CYS 43 1_555 A CYS 64 A SG CYS 46 1_555 disulf 2.058 A CYS 90 A SG CYS 72 1_555 A CYS 97 A SG CYS 79 1_555 metalc 3.711 A BA 1 B BA BA 1_555 A GLU 194 A OE1 GLU 176 1_555 metalc 2.928 A BA 1 B BA BA 1_555 A GLU 194 A OE2 GLU 176 1_555 metalc 2.093 A BA 1 B BA BA 1_555 A HOH 599 E O HOH 3_555 metalc 2.676 A BA 1 B BA BA 1_555 A HOH 555 E O HOH 3_555 metalc 3.615 A BA 1 B BA BA 1_555 A GLU 123 A OE2 GLU 105 3_555 ISOMERASE Protein Disulfide Isomerase, ISOMERASE A PHE 105 A PHE 87 1 A PRO 106 A PRO 88 -5.08 A PHE 311 A PHE 293 1 A PRO 312 A PRO 294 5.66 A TYR 450 A TYR 432 1 A PRO 451 A PRO 433 -3.80 PDI_YEAST UNP 1 23 P17967 QQEAVAPEDSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNI PGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQPAVAVVADLPAYLANETFVTPVIVQSGKIDADFNATFYSMAN KHFNDYDFVSAENADDDFKLSIYLPSAMDEPVVYNGKKADIADADVFEKWLQVEALPYFGEIDGSVFAQYVESGLPLGYL FYNDEEELEEYKPLFTELAKKNRGLMNFVSIDARKFGRHAGNLNMKEQFPLFAIHDMTEDLKYGLPQLSEEAFDELSDKI VLESKAIESLVKDFLKGDASPIVKSQEIFENQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADT YANATSDVLIAKLDHTENDVRGVVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKENGHFDVDGKALYEEAQEKAA EEADADAELADEEDAIHDEL 23 522 2B5E 23 522 P17967 A 1 5 504 1 CLONING ARTIFACT ALA 19 2B5E A P17967 UNP 1 1 CLONING ARTIFACT GLY 20 2B5E A P17967 UNP 2 1 CLONING ARTIFACT HIS 21 2B5E A P17967 UNP 3 1 INITIATING METHIONINE MET 22 2B5E A P17967 UNP 4 5 5 4 4 parallel parallel anti-parallel anti-parallel parallel parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel parallel parallel anti-parallel A VAL 35 A VAL 17 A LYS 36 A LYS 18 A THR 84 A THR 66 A ASP 89 A ASP 71 A LEU 51 A LEU 33 A PHE 57 A PHE 39 A SER 107 A SER 89 A LYS 112 A LYS 94 A SER 119 A SER 101 A ASP 121 A ASP 103 A VAL 143 A VAL 125 A VAL 145 A VAL 127 A ASP 189 A ASP 171 A GLU 194 A GLU 176 A VAL 162 A VAL 144 A GLY 167 A GLY 149 A LYS 201 A LYS 183 A LEU 206 A LEU 188 A ALA 209 A ALA 191 A VAL 215 A VAL 197 A ASN 289 A ASN 271 A ASP 294 A ASP 276 A LEU 259 A LEU 241 A TYR 264 A TYR 246 A LEU 313 A LEU 295 A ASP 318 A ASP 300 A LEU 323 A LEU 305 A GLY 326 A GLY 308 A VAL 378 A VAL 360 A LEU 381 A LEU 363 A LEU 431 A LEU 413 A ASP 436 A ASP 418 A VAL 397 A VAL 379 A TYR 402 A TYR 384 A THR 452 A THR 434 A TYR 456 A TYR 438 BINDING SITE FOR RESIDUE BA A 1 Software 4 BINDING SITE FOR RESIDUE GOL A 523 Software 4 BINDING SITE FOR RESIDUE GOL A 524 Software 3 A GLU 123 A GLU 105 4 3_555 A GLU 194 A GLU 176 4 1_555 A HOH 555 E HOH 4 3_555 A HOH 599 E HOH 4 3_555 A GLU 272 A GLU 254 4 1_555 A LEU 344 A LEU 326 4 1_555 A GLU 345 A GLU 327 4 1_555 A SER 346 A SER 328 4 1_555 A GLU 99 A GLU 81 3 1_555 A HIS 100 A HIS 82 3 1_555 A SER 119 A SER 101 3 1_555 79 I 4