1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Zhang, X. Xia, B. Jin, C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Biol.Chem. JBCHA3 0071 0021-9258 281 8296 8304 10.1074/jbc.M512015200 16418167 The bacillus subtilis YKUV is a thiol-disulfide oxidoreductase revealed by its redox structures and activity 2006 10.2210/pdb2b5x/pdb pdb_00002b5x 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 17040.279 YkuV protein residues 1-148 1 man polymer trxy no no MKLRQPMPELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGK IKETAAEHDITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRVLAETE MKLRQPMPELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGK IKETAAEHDITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRVLAETE A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Bacillus Escherichia Escherichia coli sample 1423 Bacillus subtilis 469008 Escherichia coli BL21(DE3) BL21(DE3) plasmid pET21a database_2 pdbx_nmr_software pdbx_nmr_spectrometer pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2006-01-17 1 1 2008-05-01 1 2 2011-07-13 1 3 2021-11-10 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _struct_ref_seq_dif.details RCSB Y PDBJ 2005-09-29 REL REL ensembled structures plus mean structure structures with the lowest energy 50 11 3D_13C-separated_NOESY 3D_15N-separated_NOESY 50mM sodium phosphate, 100mM sodium chloride 7.4 ambient 298.4 K simulated annealing molecular dynamics 1 minimized average structure 1mM Trxy U-15N, 13C; 50mM sodium phosphate, 100mM sodium chloride; 90% H2O 10% D2O 90% H2O/10% D2O F.Delaglio, S.Grzesiek, G.Vuister, G.Zhu, J.Pfeifer, A.Bax processing NMRPipe 2.1 B.M.Duggan, G.B.Legge, H.J.Dyson, P.E.Wright data analysis SANE P.Guntert, C.Mumenthaler, K.Wuthrich structure solution CYANA 1.0.6 D.Case refinement Amber 7.0 B.Johnson data analysis NMRView 5 Bruker collection XwinNMR 3.5 800 Bruker AVANCE 500 Bruker AVANCE MET 1 n 1 MET 1 A LYS 2 n 2 LYS 2 A LEU 3 n 3 LEU 3 A ARG 4 n 4 ARG 4 A GLN 5 n 5 GLN 5 A PRO 6 n 6 PRO 6 A MET 7 n 7 MET 7 A PRO 8 n 8 PRO 8 A GLU 9 n 9 GLU 9 A LEU 10 n 10 LEU 10 A THR 11 n 11 THR 11 A GLY 12 n 12 GLY 12 A GLU 13 n 13 GLU 13 A LYS 14 n 14 LYS 14 A ALA 15 n 15 ALA 15 A TRP 16 n 16 TRP 16 A LEU 17 n 17 LEU 17 A ASN 18 n 18 ASN 18 A GLY 19 n 19 GLY 19 A GLU 20 n 20 GLU 20 A VAL 21 n 21 VAL 21 A THR 22 n 22 THR 22 A ARG 23 n 23 ARG 23 A GLU 24 n 24 GLU 24 A GLN 25 n 25 GLN 25 A LEU 26 n 26 LEU 26 A ILE 27 n 27 ILE 27 A GLY 28 n 28 GLY 28 A GLU 29 n 29 GLU 29 A LYS 30 n 30 LYS 30 A PRO 31 n 31 PRO 31 A THR 32 n 32 THR 32 A LEU 33 n 33 LEU 33 A ILE 34 n 34 ILE 34 A HIS 35 n 35 HIS 35 A PHE 36 n 36 PHE 36 A TRP 37 n 37 TRP 37 A SER 38 n 38 SER 38 A ILE 39 n 39 ILE 39 A SER 40 n 40 SER 40 A CYS 41 n 41 CYS 41 A HIS 42 n 42 HIS 42 A LEU 43 n 43 LEU 43 A CYS 44 n 44 CYS 44 A LYS 45 n 45 LYS 45 A GLU 46 n 46 GLU 46 A ALA 47 n 47 ALA 47 A MET 48 n 48 MET 48 A PRO 49 n 49 PRO 49 A GLN 50 n 50 GLN 50 A VAL 51 n 51 VAL 51 A ASN 52 n 52 ASN 52 A GLU 53 n 53 GLU 53 A PHE 54 n 54 PHE 54 A ARG 55 n 55 ARG 55 A ASP 56 n 56 ASP 56 A LYS 57 n 57 LYS 57 A TYR 58 n 58 TYR 58 A GLN 59 n 59 GLN 59 A ASP 60 n 60 ASP 60 A GLN 61 n 61 GLN 61 A LEU 62 n 62 LEU 62 A ASN 63 n 63 ASN 63 A VAL 64 n 64 VAL 64 A VAL 65 n 65 VAL 65 A ALA 66 n 66 ALA 66 A VAL 67 n 67 VAL 67 A HIS 68 n 68 HIS 68 A MET 69 n 69 MET 69 A PRO 70 n 70 PRO 70 A ARG 71 n 71 ARG 71 A SER 72 n 72 SER 72 A GLU 73 n 73 GLU 73 A ASP 74 n 74 ASP 74 A ASP 75 n 75 ASP 75 A LEU 76 n 76 LEU 76 A ASP 77 n 77 ASP 77 A PRO 78 n 78 PRO 78 A GLY 79 n 79 GLY 79 A LYS 80 n 80 LYS 80 A ILE 81 n 81 ILE 81 A LYS 82 n 82 LYS 82 A GLU 83 n 83 GLU 83 A THR 84 n 84 THR 84 A ALA 85 n 85 ALA 85 A ALA 86 n 86 ALA 86 A GLU 87 n 87 GLU 87 A HIS 88 n 88 HIS 88 A ASP 89 n 89 ASP 89 A ILE 90 n 90 ILE 90 A THR 91 n 91 THR 91 A GLN 92 n 92 GLN 92 A PRO 93 n 93 PRO 93 A ILE 94 n 94 ILE 94 A PHE 95 n 95 PHE 95 A VAL 96 n 96 VAL 96 A ASP 97 n 97 ASP 97 A SER 98 n 98 SER 98 A ASP 99 n 99 ASP 99 A HIS 100 n 100 HIS 100 A ALA 101 n 101 ALA 101 A LEU 102 n 102 LEU 102 A THR 103 n 103 THR 103 A ASP 104 n 104 ASP 104 A ALA 105 n 105 ALA 105 A PHE 106 n 106 PHE 106 A GLU 107 n 107 GLU 107 A ASN 108 n 108 ASN 108 A GLU 109 n 109 GLU 109 A TYR 110 n 110 TYR 110 A VAL 111 n 111 VAL 111 A PRO 112 n 112 PRO 112 A ALA 113 n 113 ALA 113 A TYR 114 n 114 TYR 114 A TYR 115 n 115 TYR 115 A VAL 116 n 116 VAL 116 A PHE 117 n 117 PHE 117 A ASP 118 n 118 ASP 118 A LYS 119 n 119 LYS 119 A THR 120 n 120 THR 120 A GLY 121 n 121 GLY 121 A GLN 122 n 122 GLN 122 A LEU 123 n 123 LEU 123 A ARG 124 n 124 ARG 124 A HIS 125 n 125 HIS 125 A PHE 126 n 126 PHE 126 A GLN 127 n 127 GLN 127 A ALA 128 n 128 ALA 128 A GLY 129 n 129 GLY 129 A GLY 130 n 130 GLY 130 A SER 131 n 131 SER 131 A GLY 132 n 132 GLY 132 A MET 133 n 133 MET 133 A LYS 134 n 134 LYS 134 A MET 135 n 135 MET 135 A LEU 136 n 136 LEU 136 A GLU 137 n 137 GLU 137 A LYS 138 n 138 LYS 138 A ARG 139 n 139 ARG 139 A VAL 140 n 140 VAL 140 A ASN 141 n 141 ASN 141 A ARG 142 n 142 ARG 142 A VAL 143 n 143 VAL 143 A LEU 144 n 144 LEU 144 A ALA 145 n 145 ALA 145 A GLU 146 n 146 GLU 146 A THR 147 n 147 THR 147 A GLU 148 n 148 GLU 148 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 A N LEU 17 A N LEU 17 A O ILE 94 A O ILE 94 A O PHE 95 A O PHE 95 A N HIS 68 A N HIS 68 A O ASN 63 A O ASN 63 A N LEU 33 A N LEU 33 A N ILE 34 A N ILE 34 A O TYR 115 A O TYR 115 A N VAL 116 A N VAL 116 A O ARG 124 A O ARG 124 1 A A HG OD2 SER ASP 40 75 1.59 2 A A HG OD2 SER ASP 40 75 1.59 2 A A HG OD2 SER ASP 72 75 1.60 3 A A HG OD2 SER ASP 40 75 1.57 4 A A HG OD2 SER ASP 40 75 1.59 5 A A HG OD2 SER ASP 40 75 1.57 8 A A HG OD2 SER ASP 72 75 1.57 9 A A HG OD2 SER ASP 40 75 1.56 9 A A OD1 HG1 ASP THR 118 120 1.58 10 A A HG OD2 SER ASP 40 75 1.59 11 A A OD1 HG1 ASP THR 118 120 1.56 1 A ARG 55 0.093 SIDE CHAIN 3 A TYR 58 0.066 SIDE CHAIN 3 A TYR 114 0.073 SIDE CHAIN 4 A PHE 54 0.076 SIDE CHAIN 4 A TYR 110 0.078 SIDE CHAIN 5 A TYR 58 0.081 SIDE CHAIN 8 A ARG 139 0.088 SIDE CHAIN 9 A TYR 110 0.073 SIDE CHAIN 3 -3.35 0.50 120.30 116.95 A A A NE CZ NH2 ARG ARG ARG 124 124 124 N 7 -3.24 0.50 120.30 117.06 A A A NE CZ NH2 ARG ARG ARG 142 142 142 N 11 3.76 0.50 120.30 124.06 A A A NE CZ NH1 ARG ARG ARG 55 55 55 N 1 A PRO 8 -92.59 -102.41 1 A GLU 13 -158.65 -29.02 1 A ASN 18 68.83 -33.31 1 A GLU 29 -138.58 -42.79 1 A ARG 71 -139.06 -33.25 1 A GLU 109 -157.52 37.75 2 A LYS 2 -124.74 -126.19 2 A PRO 8 -82.24 -154.27 2 A TRP 16 -149.06 54.12 2 A ASN 18 69.35 -30.23 2 A GLU 29 -148.83 -40.13 2 A ARG 71 -140.55 -31.25 2 A ASP 75 -142.11 -13.56 2 A ASP 99 -134.02 -46.77 2 A HIS 100 67.27 130.39 2 A ASN 108 -34.23 119.33 2 A GLU 109 -150.22 43.00 2 A VAL 111 -175.74 141.48 2 A SER 131 -52.11 109.07 3 A ARG 4 51.96 13.84 3 A PRO 8 -88.15 -144.91 3 A ASN 18 72.54 -31.61 3 A ARG 23 -61.40 8.94 3 A GLU 29 -152.46 -51.66 3 A PRO 31 -55.02 170.79 3 A ASP 99 -130.64 -38.26 3 A HIS 100 62.06 95.14 3 A ASN 108 -37.16 118.34 3 A GLU 109 -144.09 47.67 3 A VAL 111 -178.23 145.36 3 A LEU 123 -59.33 92.55 3 A MET 133 -143.49 29.19 3 A THR 147 -145.77 45.24 4 A ARG 4 56.41 16.64 4 A PRO 8 -87.92 -139.60 4 A LEU 10 -59.08 91.64 4 A TRP 16 -141.27 55.53 4 A ASN 18 72.97 -30.99 4 A GLU 29 -144.72 -46.59 4 A PRO 31 -46.68 164.58 4 A ARG 71 -138.19 -32.20 4 A HIS 100 54.03 100.35 4 A GLU 109 -149.33 31.75 4 A VAL 111 -173.37 145.76 4 A LYS 119 -59.79 -5.24 4 A LEU 123 -58.14 106.84 4 A MET 133 -141.51 15.55 4 A THR 147 -140.01 44.57 5 A PRO 8 -92.71 -139.67 5 A GLU 13 -143.41 -27.27 5 A TRP 16 -145.29 54.29 5 A ASN 18 68.35 -33.73 5 A ARG 23 -64.63 12.47 5 A GLU 29 -153.42 -50.23 5 A ARG 71 -139.78 -36.57 5 A HIS 100 53.67 87.84 5 A GLU 109 -154.92 40.90 5 A SER 131 49.33 29.57 5 A MET 133 48.23 29.65 5 A THR 147 -140.96 45.02 6 A PRO 8 -90.74 -79.33 6 A GLU 13 -152.99 89.64 6 A LYS 14 -139.50 -44.41 6 A ASN 18 71.82 -30.86 6 A GLU 29 -145.20 -45.33 6 A PRO 31 -48.78 164.32 6 A SER 72 -144.07 -146.03 6 A ASP 75 -67.28 7.02 6 A HIS 100 55.42 91.66 6 A ASN 108 -39.47 123.50 6 A GLU 109 -142.80 19.22 7 A ARG 4 54.03 14.35 7 A PRO 8 -76.86 -157.06 7 A TRP 16 -141.35 52.24 7 A ASN 18 74.17 -34.77 7 A ARG 23 -63.42 10.73 7 A GLU 29 -136.66 -53.29 7 A ASP 99 -138.36 -37.19 7 A HIS 100 64.67 123.35 7 A GLU 109 -153.31 27.89 7 A LEU 123 -62.93 95.87 7 A SER 131 -51.29 109.72 7 A THR 147 -140.83 45.11 8 A PRO 8 -80.33 -72.16 8 A ASN 18 71.81 -31.16 8 A GLU 29 -156.11 -41.77 8 A GLN 61 -142.84 -16.31 8 A ILE 90 -63.05 98.37 8 A ASP 99 -131.81 -32.65 8 A HIS 100 54.01 98.79 8 A GLU 109 -148.69 33.00 8 A SER 131 -51.56 109.20 8 A MET 133 49.59 23.24 8 A THR 147 -141.05 45.41 9 A ARG 4 57.21 15.56 9 A PRO 8 -85.95 -85.41 9 A GLU 13 -140.19 -18.95 9 A ASN 18 70.61 -29.87 9 A GLU 29 -147.49 -45.35 9 A ILE 39 -72.34 20.69 9 A GLN 61 -140.47 -14.93 9 A ARG 71 -138.62 -34.99 9 A HIS 100 53.85 80.86 9 A GLU 109 -157.35 36.85 9 A LEU 123 -55.87 95.48 9 A SER 131 -53.17 109.27 9 A ALA 145 -68.89 2.78 10 A LEU 3 -25.38 133.06 10 A MET 7 -39.89 121.66 10 A PRO 8 -102.25 -142.22 10 A GLU 9 -66.57 58.38 10 A LEU 10 -59.81 101.93 10 A ASN 18 68.95 -25.65 10 A GLU 29 -153.37 -44.09 10 A GLN 61 -143.29 -14.95 10 A HIS 100 61.57 91.25 10 A GLU 109 -145.57 32.54 10 A LYS 119 -56.77 -1.36 10 A SER 131 -54.84 105.56 10 A MET 133 52.04 19.98 11 A LYS 2 64.71 155.04 11 A LEU 3 50.14 95.39 11 A MET 7 -27.72 121.43 11 A ASN 18 62.55 -7.89 11 A ARG 23 -67.08 13.33 11 A GLN 25 -132.08 -32.55 11 A GLU 29 -146.92 -41.62 11 A ASP 99 -135.98 -38.44 11 A HIS 100 67.90 125.77 11 A GLU 109 -155.76 41.85 11 A LEU 123 -68.45 91.08 11 A THR 147 -143.15 44.77 minimized average Solution Structure of a Thioredoxin-like Protein in the Reduced Form 1 N N A THR 22 A THR 22 HELX_P A ILE 27 A ILE 27 1 1 6 A CYS 41 A CYS 41 HELX_P A GLN 59 A GLN 59 1 2 19 A ASP 77 A ASP 77 HELX_P A HIS 88 A HIS 88 1 3 12 A HIS 100 A HIS 100 HELX_P A PHE 106 A PHE 106 1 4 7 A MET 133 A MET 133 HELX_P A ALA 145 A ALA 145 1 5 13 OXIDOREDUCTASE Thioredoxin-like, OXIDOREDUCTASE A VAL 111 A VAL 111 1 A PRO 112 A PRO 112 -20.97 A VAL 111 A VAL 111 2 A PRO 112 A PRO 112 -11.56 A VAL 111 A VAL 111 3 A PRO 112 A PRO 112 -10.98 A VAL 111 A VAL 111 4 A PRO 112 A PRO 112 -11.39 A VAL 111 A VAL 111 5 A PRO 112 A PRO 112 -11.40 A VAL 111 A VAL 111 6 A PRO 112 A PRO 112 -11.30 A VAL 111 A VAL 111 7 A PRO 112 A PRO 112 -12.07 A VAL 111 A VAL 111 8 A PRO 112 A PRO 112 -11.01 A VAL 111 A VAL 111 9 A PRO 112 A PRO 112 -11.91 A VAL 111 A VAL 111 10 A PRO 112 A PRO 112 -11.23 A VAL 111 A VAL 111 11 A PRO 112 A PRO 112 -11.53 CAA10885 GB 1 1 2632243 MKLRQPMPELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGK IKETAAEHDITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRVWLKRN 1 148 2B5X 1 148 2632243 A 1 1 148 1 TRP engineered mutation LEU 144 2B5X A 2632243 GB 144 144 1 LEU engineered mutation ALA 145 2B5X A 2632243 GB 145 145 1 LYS engineered mutation GLU 146 2B5X A 2632243 GB 146 146 1 ARG engineered mutation THR 147 2B5X A 2632243 GB 147 147 1 ASN engineered mutation GLU 148 2B5X A 2632243 GB 148 148 6 anti-parallel parallel parallel anti-parallel anti-parallel A TRP 16 A TRP 16 A LEU 17 A LEU 17 A ILE 94 A ILE 94 A VAL 96 A VAL 96 A ASN 63 A ASN 63 A HIS 68 A HIS 68 A THR 32 A THR 32 A TRP 37 A TRP 37 A ALA 113 A ALA 113 A PHE 117 A PHE 117 A LEU 123 A LEU 123 A ALA 128 A ALA 128