0.016458
0.009502
0.000000
0.000000
0.019004
0.000000
0.000000
0.000000
0.010409
0.00000
0.00000
0.00000
Collins, M.D.
Quillin, M.L.
Matthews, B.W.
Gruner, S.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
60.760
60.760
96.070
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C2 H6 O S
78.133
BETA-MERCAPTOETHANOL
non-polymer
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
C
N
75
N
C
N
76
N
O
N
77
N
S
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
CL
N
85
N
N
N
86
R
C
N
87
N
C
N
88
N
O
N
89
N
C
N
90
N
S
N
91
N
O
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
N
N
100
S
C
N
101
N
C
N
102
N
O
N
103
N
C
N
104
N
C
N
105
N
C
N
106
N
O
N
107
N
N
N
108
N
O
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
N
N
120
S
C
N
121
N
C
N
122
N
O
N
123
N
C
N
124
N
C
N
125
N
C
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
N
N
139
N
C
N
140
N
C
N
141
N
O
N
142
N
O
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
N
N
149
S
C
N
150
N
C
N
151
N
O
N
152
N
C
Y
153
N
C
Y
154
N
N
Y
155
N
C
Y
156
N
C
Y
157
N
N
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
N
N
173
S
C
N
174
N
C
N
175
N
O
N
176
S
C
N
177
N
C
N
178
N
C
N
179
N
C
N
180
N
O
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
N
N
195
S
C
N
196
N
C
N
197
N
O
N
198
N
C
N
199
N
C
N
200
N
C
N
201
N
C
N
202
N
O
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
C
N
223
N
C
N
224
N
N
N
225
N
O
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
N
N
242
S
C
N
243
N
C
N
244
N
O
N
245
N
C
N
246
N
C
N
247
N
S
N
248
N
C
N
249
N
O
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
N
N
262
S
C
N
263
N
C
N
264
N
O
N
265
N
C
Y
266
N
C
Y
267
N
C
Y
268
N
C
Y
269
N
C
Y
270
N
C
Y
271
N
C
N
272
N
O
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
N
N
285
S
C
N
286
N
C
N
287
N
O
N
288
N
C
N
289
N
C
N
290
N
C
N
291
N
O
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
N
N
302
S
C
N
303
N
C
N
304
N
O
N
305
N
C
N
306
N
O
N
307
N
O
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
N
N
316
S
C
N
317
N
C
N
318
N
O
N
319
R
C
N
320
N
O
N
321
N
C
N
322
N
O
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
N
N
333
S
C
N
334
N
C
N
335
N
O
N
336
N
C
Y
337
N
C
Y
338
N
C
Y
339
N
C
Y
340
N
N
Y
341
N
C
Y
342
N
C
Y
343
N
C
Y
344
N
C
Y
345
N
C
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
N
N
360
S
C
N
361
N
C
N
362
N
O
N
363
N
C
Y
364
N
C
Y
365
N
C
Y
366
N
C
Y
367
N
C
Y
368
N
C
Y
369
N
C
N
370
N
O
N
371
N
O
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
N
N
384
S
C
N
385
N
C
N
386
N
O
N
387
N
C
N
388
N
C
N
389
N
C
N
390
N
O
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
doub
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
doub
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
Y
149
N
sing
Y
150
N
doub
Y
151
N
doub
N
152
N
sing
Y
153
N
sing
N
154
N
sing
Y
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
doub
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
doub
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
doub
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
Y
257
N
doub
Y
258
N
sing
Y
259
N
sing
N
260
N
sing
Y
261
N
doub
N
262
N
sing
Y
263
N
doub
N
264
N
sing
Y
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
doub
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
doub
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
doub
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
Y
326
N
doub
Y
327
N
sing
Y
328
N
sing
N
329
N
sing
Y
330
N
doub
Y
331
N
sing
Y
332
N
sing
N
333
N
sing
Y
334
N
sing
Y
335
N
doub
N
336
N
sing
Y
337
N
doub
N
338
N
sing
Y
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
Y
354
N
doub
Y
355
N
sing
Y
356
N
sing
N
357
N
sing
Y
358
N
doub
N
359
N
sing
Y
360
N
doub
N
361
N
sing
Y
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
doub
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
US
Proc.Natl.Acad.Sci.Usa
PNASA6
0040
0027-8424
102
16668
16671
10.1073/pnas.0508224102
16269539
Cooperative water filling of a nonpolar protein cavity observed by high-pressure crystallography and simulation
2005
10.2210/pdb2b72/pdb
pdb_00002b72
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
293
1
mirrors
CCD
2004-11-15
ADSC QUANTUM 4
Silicon crystal
SINGLE WAVELENGTH
M
x-ray
1
0.9174
1.0
F1
CHESS
0.9174
SYNCHROTRON
CHESS BEAMLINE F1
18359.023
Lysozyme
3.2.1.17
C54T,C97A,L99A
1
man
polymer
35.453
CHLORIDE ION
2
syn
non-polymer
78.133
BETA-MERCAPTOETHANOL
2
syn
non-polymer
18.015
water
164
nat
water
Lysis protein, Muramidase, Endolysin
no
no
MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILR
NAKLKPVYDSLDAVRRAAAINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA
YK
MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILR
NAKLKPVYDSLDAVRRAAAINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA
YK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
T4-like viruses
Enterobacteria phage T4 sensu lato
Escherichia
sample
GENE E
10665
Enterobacteria phage T4
562
Escherichia coli
PHS1403
1
2.79
55.88
VAPOR DIFFUSION, HANGING DROP
7.1
~ 2.0 M Na/K phosphate, 50 mM beta-mercaptoethanol, pH 7.1, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
software
database_2
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Database references
Derived calculations
Data collection
1
0
2005-11-08
1
1
2008-05-01
1
2
2011-07-13
1
3
2017-10-11
1
4
2021-10-20
1
5
2024-02-14
_software.classification
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2005-10-03
REL
REL
CL
CHLORIDE ION
BME
BETA-MERCAPTOETHANOL
HOH
water
CL
173
2
CL
CL
173
A
CL
178
2
CL
CL
178
A
SEO
901
3
BME
BME
901
A
SEO
902
3
BME
BME
902
A
WAT
171
4
HOH
HOH
903
A
WAT
172
4
HOH
HOH
904
A
WAT
174
4
HOH
HOH
905
A
WAT
175
4
HOH
HOH
906
A
WAT
177
4
HOH
HOH
907
A
WAT
179
4
HOH
HOH
908
A
WAT
180
4
HOH
HOH
909
A
WAT
181
4
HOH
HOH
910
A
WAT
182
4
HOH
HOH
911
A
WAT
183
4
HOH
HOH
912
A
WAT
184
4
HOH
HOH
913
A
WAT
186
4
HOH
HOH
914
A
WAT
187
4
HOH
HOH
915
A
WAT
188
4
HOH
HOH
916
A
WAT
189
4
HOH
HOH
917
A
WAT
190
4
HOH
HOH
918
A
WAT
192
4
HOH
HOH
919
A
WAT
193
4
HOH
HOH
920
A
WAT
194
4
HOH
HOH
921
A
WAT
195
4
HOH
HOH
922
A
WAT
197
4
HOH
HOH
923
A
WAT
200
4
HOH
HOH
924
A
WAT
201
4
HOH
HOH
925
A
WAT
202
4
HOH
HOH
926
A
WAT
203
4
HOH
HOH
927
A
WAT
204
4
HOH
HOH
928
A
WAT
206
4
HOH
HOH
929
A
WAT
207
4
HOH
HOH
930
A
WAT
208
4
HOH
HOH
931
A
WAT
209
4
HOH
HOH
932
A
WAT
210
4
HOH
HOH
933
A
WAT
211
4
HOH
HOH
934
A
WAT
213
4
HOH
HOH
935
A
WAT
214
4
HOH
HOH
936
A
WAT
215
4
HOH
HOH
937
A
WAT
216
4
HOH
HOH
938
A
WAT
217
4
HOH
HOH
939
A
WAT
218
4
HOH
HOH
940
A
WAT
219
4
HOH
HOH
941
A
WAT
220
4
HOH
HOH
942
A
WAT
221
4
HOH
HOH
943
A
WAT
222
4
HOH
HOH
944
A
WAT
223
4
HOH
HOH
945
A
WAT
224
4
HOH
HOH
946
A
WAT
225
4
HOH
HOH
947
A
WAT
226
4
HOH
HOH
948
A
WAT
227
4
HOH
HOH
949
A
WAT
228
4
HOH
HOH
950
A
WAT
229
4
HOH
HOH
951
A
WAT
230
4
HOH
HOH
952
A
WAT
231
4
HOH
HOH
953
A
WAT
232
4
HOH
HOH
954
A
WAT
234
4
HOH
HOH
955
A
WAT
235
4
HOH
HOH
956
A
WAT
236
4
HOH
HOH
957
A
WAT
237
4
HOH
HOH
958
A
WAT
238
4
HOH
HOH
959
A
WAT
239
4
HOH
HOH
960
A
WAT
240
4
HOH
HOH
961
A
WAT
242
4
HOH
HOH
962
A
WAT
244
4
HOH
HOH
963
A
WAT
245
4
HOH
HOH
964
A
WAT
246
4
HOH
HOH
965
A
WAT
248
4
HOH
HOH
966
A
WAT
249
4
HOH
HOH
967
A
WAT
250
4
HOH
HOH
968
A
WAT
251
4
HOH
HOH
969
A
WAT
253
4
HOH
HOH
970
A
WAT
254
4
HOH
HOH
971
A
WAT
256
4
HOH
HOH
972
A
WAT
257
4
HOH
HOH
973
A
WAT
259
4
HOH
HOH
974
A
WAT
263
4
HOH
HOH
975
A
WAT
266
4
HOH
HOH
976
A
WAT
269
4
HOH
HOH
977
A
WAT
270
4
HOH
HOH
978
A
WAT
272
4
HOH
HOH
979
A
WAT
273
4
HOH
HOH
980
A
WAT
274
4
HOH
HOH
981
A
WAT
277
4
HOH
HOH
982
A
WAT
278
4
HOH
HOH
983
A
WAT
281
4
HOH
HOH
984
A
WAT
282
4
HOH
HOH
985
A
WAT
284
4
HOH
HOH
986
A
WAT
288
4
HOH
HOH
987
A
WAT
292
4
HOH
HOH
988
A
WAT
295
4
HOH
HOH
989
A
WAT
296
4
HOH
HOH
990
A
WAT
297
4
HOH
HOH
991
A
WAT
298
4
HOH
HOH
992
A
WAT
299
4
HOH
HOH
993
A
WAT
300
4
HOH
HOH
994
A
WAT
301
4
HOH
HOH
995
A
WAT
302
4
HOH
HOH
996
A
WAT
303
4
HOH
HOH
997
A
WAT
304
4
HOH
HOH
998
A
WAT
306
4
HOH
HOH
999
A
WAT
308
4
HOH
HOH
1000
A
WAT
311
4
HOH
HOH
1001
A
WAT
312
4
HOH
HOH
1002
A
WAT
314
4
HOH
HOH
1003
A
WAT
318
4
HOH
HOH
1004
A
WAT
319
4
HOH
HOH
1005
A
WAT
321
4
HOH
HOH
1006
A
WAT
322
4
HOH
HOH
1007
A
WAT
324
4
HOH
HOH
1008
A
WAT
325
4
HOH
HOH
1009
A
WAT
326
4
HOH
HOH
1010
A
WAT
328
4
HOH
HOH
1011
A
WAT
330
4
HOH
HOH
1012
A
WAT
1
4
HOH
HOH
1013
A
WAT
2
4
HOH
HOH
1014
A
WAT
3
4
HOH
HOH
1015
A
WAT
4
4
HOH
HOH
1016
A
WAT
5
4
HOH
HOH
1017
A
WAT
6
4
HOH
HOH
1018
A
WAT
7
4
HOH
HOH
1019
A
WAT
8
4
HOH
HOH
1020
A
WAT
9
4
HOH
HOH
1021
A
WAT
10
4
HOH
HOH
1022
A
WAT
11
4
HOH
HOH
1023
A
WAT
12
4
HOH
HOH
1024
A
WAT
13
4
HOH
HOH
1025
A
WAT
14
4
HOH
HOH
1026
A
WAT
15
4
HOH
HOH
1027
A
WAT
16
4
HOH
HOH
1028
A
WAT
17
4
HOH
HOH
1029
A
WAT
18
4
HOH
HOH
1030
A
WAT
19
4
HOH
HOH
1031
A
WAT
20
4
HOH
HOH
1032
A
WAT
21
4
HOH
HOH
1033
A
WAT
22
4
HOH
HOH
1034
A
WAT
23
4
HOH
HOH
1035
A
WAT
24
4
HOH
HOH
1036
A
WAT
25
4
HOH
HOH
1037
A
WAT
26
4
HOH
HOH
1038
A
WAT
27
4
HOH
HOH
1039
A
WAT
28
4
HOH
HOH
1040
A
WAT
29
4
HOH
HOH
1041
A
WAT
30
4
HOH
HOH
1042
A
WAT
31
4
HOH
HOH
1043
A
WAT
32
4
HOH
HOH
1044
A
WAT
33
4
HOH
HOH
1045
A
WAT
34
4
HOH
HOH
1046
A
WAT
35
4
HOH
HOH
1047
A
WAT
36
4
HOH
HOH
1048
A
WAT
37
4
HOH
HOH
1049
A
WAT
38
4
HOH
HOH
1050
A
WAT
39
4
HOH
HOH
1051
A
WAT
40
4
HOH
HOH
1052
A
WAT
41
4
HOH
HOH
1053
A
WAT
42
4
HOH
HOH
1054
A
WAT
43
4
HOH
HOH
1055
A
WAT
44
4
HOH
HOH
1056
A
WAT
45
4
HOH
HOH
1057
A
WAT
46
4
HOH
HOH
1058
A
WAT
47
4
HOH
HOH
1059
A
WAT
48
4
HOH
HOH
1060
A
WAT
49
4
HOH
HOH
1061
A
WAT
50
4
HOH
HOH
1062
A
WAT
51
4
HOH
HOH
1063
A
WAT
52
4
HOH
HOH
1064
A
WAT
53
4
HOH
HOH
1065
A
WAT
54
4
HOH
HOH
1066
A
MET
1
n
1
MET
1
A
ASN
2
n
2
ASN
2
A
ILE
3
n
3
ILE
3
A
PHE
4
n
4
PHE
4
A
GLU
5
n
5
GLU
5
A
MET
6
n
6
MET
6
A
LEU
7
n
7
LEU
7
A
ARG
8
n
8
ARG
8
A
ILE
9
n
9
ILE
9
A
ASP
10
n
10
ASP
10
A
GLU
11
n
11
GLU
11
A
GLY
12
n
12
GLY
12
A
LEU
13
n
13
LEU
13
A
ARG
14
n
14
ARG
14
A
LEU
15
n
15
LEU
15
A
LYS
16
n
16
LYS
16
A
ILE
17
n
17
ILE
17
A
TYR
18
n
18
TYR
18
A
LYS
19
n
19
LYS
19
A
ASP
20
n
20
ASP
20
A
THR
21
n
21
THR
21
A
GLU
22
n
22
GLU
22
A
GLY
23
n
23
GLY
23
A
TYR
24
n
24
TYR
24
A
TYR
25
n
25
TYR
25
A
THR
26
n
26
THR
26
A
ILE
27
n
27
ILE
27
A
GLY
28
n
28
GLY
28
A
ILE
29
n
29
ILE
29
A
GLY
30
n
30
GLY
30
A
HIS
31
n
31
HIS
31
A
LEU
32
n
32
LEU
32
A
LEU
33
n
33
LEU
33
A
THR
34
n
34
THR
34
A
LYS
35
n
35
LYS
35
A
SER
36
n
36
SER
36
A
PRO
37
n
37
PRO
37
A
SER
38
n
38
SER
38
A
LEU
39
n
39
LEU
39
A
ASN
40
n
40
ASN
40
A
ALA
41
n
41
ALA
41
A
ALA
42
n
42
ALA
42
A
LYS
43
n
43
LYS
43
A
SER
44
n
44
SER
44
A
GLU
45
n
45
GLU
45
A
LEU
46
n
46
LEU
46
A
ASP
47
n
47
ASP
47
A
LYS
48
n
48
LYS
48
A
ALA
49
n
49
ALA
49
A
ILE
50
n
50
ILE
50
A
GLY
51
n
51
GLY
51
A
ARG
52
n
52
ARG
52
A
ASN
53
n
53
ASN
53
A
THR
54
n
54
THR
54
A
ASN
55
n
55
ASN
55
A
GLY
56
n
56
GLY
56
A
VAL
57
n
57
VAL
57
A
ILE
58
n
58
ILE
58
A
THR
59
n
59
THR
59
A
LYS
60
n
60
LYS
60
A
ASP
61
n
61
ASP
61
A
GLU
62
n
62
GLU
62
A
ALA
63
n
63
ALA
63
A
GLU
64
n
64
GLU
64
A
LYS
65
n
65
LYS
65
A
LEU
66
n
66
LEU
66
A
PHE
67
n
67
PHE
67
A
ASN
68
n
68
ASN
68
A
GLN
69
n
69
GLN
69
A
ASP
70
n
70
ASP
70
A
VAL
71
n
71
VAL
71
A
ASP
72
n
72
ASP
72
A
ALA
73
n
73
ALA
73
A
ALA
74
n
74
ALA
74
A
VAL
75
n
75
VAL
75
A
ARG
76
n
76
ARG
76
A
GLY
77
n
77
GLY
77
A
ILE
78
n
78
ILE
78
A
LEU
79
n
79
LEU
79
A
ARG
80
n
80
ARG
80
A
ASN
81
n
81
ASN
81
A
ALA
82
n
82
ALA
82
A
LYS
83
n
83
LYS
83
A
LEU
84
n
84
LEU
84
A
LYS
85
n
85
LYS
85
A
PRO
86
n
86
PRO
86
A
VAL
87
n
87
VAL
87
A
TYR
88
n
88
TYR
88
A
ASP
89
n
89
ASP
89
A
SER
90
n
90
SER
90
A
LEU
91
n
91
LEU
91
A
ASP
92
n
92
ASP
92
A
ALA
93
n
93
ALA
93
A
VAL
94
n
94
VAL
94
A
ARG
95
n
95
ARG
95
A
ARG
96
n
96
ARG
96
A
ALA
97
n
97
ALA
97
A
ALA
98
n
98
ALA
98
A
ALA
99
n
99
ALA
99
A
ILE
100
n
100
ILE
100
A
ASN
101
n
101
ASN
101
A
MET
102
n
102
MET
102
A
VAL
103
n
103
VAL
103
A
PHE
104
n
104
PHE
104
A
GLN
105
n
105
GLN
105
A
MET
106
n
106
MET
106
A
GLY
107
n
107
GLY
107
A
GLU
108
n
108
GLU
108
A
THR
109
n
109
THR
109
A
GLY
110
n
110
GLY
110
A
VAL
111
n
111
VAL
111
A
ALA
112
n
112
ALA
112
A
GLY
113
n
113
GLY
113
A
PHE
114
n
114
PHE
114
A
THR
115
n
115
THR
115
A
ASN
116
n
116
ASN
116
A
SER
117
n
117
SER
117
A
LEU
118
n
118
LEU
118
A
ARG
119
n
119
ARG
119
A
MET
120
n
120
MET
120
A
LEU
121
n
121
LEU
121
A
GLN
122
n
122
GLN
122
A
GLN
123
n
123
GLN
123
A
LYS
124
n
124
LYS
124
A
ARG
125
n
125
ARG
125
A
TRP
126
n
126
TRP
126
A
ASP
127
n
127
ASP
127
A
GLU
128
n
128
GLU
128
A
ALA
129
n
129
ALA
129
A
ALA
130
n
130
ALA
130
A
VAL
131
n
131
VAL
131
A
ASN
132
n
132
ASN
132
A
LEU
133
n
133
LEU
133
A
ALA
134
n
134
ALA
134
A
LYS
135
n
135
LYS
135
A
SER
136
n
136
SER
136
A
ARG
137
n
137
ARG
137
A
TRP
138
n
138
TRP
138
A
TYR
139
n
139
TYR
139
A
ASN
140
n
140
ASN
140
A
GLN
141
n
141
GLN
141
A
THR
142
n
142
THR
142
A
PRO
143
n
143
PRO
143
A
ASN
144
n
144
ASN
144
A
ARG
145
n
145
ARG
145
A
ALA
146
n
146
ALA
146
A
LYS
147
n
147
LYS
147
A
ARG
148
n
148
ARG
148
A
VAL
149
n
149
VAL
149
A
ILE
150
n
150
ILE
150
A
THR
151
n
151
THR
151
A
THR
152
n
152
THR
152
A
PHE
153
n
153
PHE
153
A
ARG
154
n
154
ARG
154
A
THR
155
n
155
THR
155
A
GLY
156
n
156
GLY
156
A
THR
157
n
157
THR
157
A
TRP
158
n
158
TRP
158
A
ASP
159
n
159
ASP
159
A
ALA
160
n
160
ALA
160
A
TYR
161
n
161
TYR
161
A
LYS
162
n
162
LYS
162
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TYR
18
A
N
TYR
18
A
O
THR
26
A
O
THR
26
A
N
TYR
25
A
N
TYR
25
A
O
LEU
33
A
O
LEU
33
1
A
A
O1
O1
BME
BME
901
901
2.17
1_555
5_555
1
A
ASP
20
-79.40
-167.28
1
A
ILE
29
-106.97
74.98
1
A
PHE
114
-97.14
48.05
25.792
-0.15
-0.08
0.00
-0.15
0.00
0.23
0.955
0.925
0.21193
0.17015
0.172
0.172
2.10
52.63
558
11295
11295
4.7
95.20
4.277
0.112
RANDOM
1
THROUGHOUT
0.000
0.191
0.165
0.80
0.80
1.20
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
2.10
52.63
172
1463
2
0
1289
0.017
0.022
1315
1.560
1.953
1767
5.332
5.000
161
36.855
23.387
62
16.269
15.000
243
15.686
15.000
13
0.106
0.200
196
0.007
0.020
976
0.207
0.200
624
0.307
0.200
924
0.160
0.200
130
0.198
0.200
43
0.251
0.200
15
1.289
1.500
831
1.848
2.000
1283
3.533
3.000
560
5.689
4.500
484
0.291
0.235
2.155
45
829
20
98.53
2.10
52.63
2B72
11295
11295
0.00
0.00
1
95.20
2.100
2.155
98.53
refinement
REFMAC
5.2.0005
data processing
Adxv
data scaling
SCALEPACK
T4 Lysozyme mutant L99A at 100 MPa
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
4
N
N
A
ASN
2
A
ASN
2
HELX_P
A
GLY
12
A
GLY
12
1
1
11
A
SER
38
A
SER
38
HELX_P
A
GLY
51
A
GLY
51
1
2
14
A
THR
59
A
THR
59
HELX_P
A
ARG
80
A
ARG
80
1
3
22
A
LYS
83
A
LYS
83
HELX_P
A
LEU
91
A
LEU
91
1
4
9
A
ASP
92
A
ASP
92
HELX_P
A
GLY
107
A
GLY
107
1
5
16
A
GLY
107
A
GLY
107
HELX_P
A
GLY
113
A
GLY
113
1
6
7
A
PHE
114
A
PHE
114
HELX_P
A
GLN
123
A
GLN
123
1
7
10
A
ARG
125
A
ARG
125
HELX_P
A
ALA
134
A
ALA
134
1
8
10
A
SER
136
A
SER
136
HELX_P
A
THR
142
A
THR
142
1
9
7
A
THR
142
A
THR
142
HELX_P
A
GLY
156
A
GLY
156
1
10
15
A
TRP
158
A
TRP
158
HELX_P
A
LYS
162
A
LYS
162
5
11
5
HYDROLASE
High Pressure, T4 Lysozyme, cavity, HYDROLASE
LYS_BPT4
UNP
1
1
P00720
MNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILR
NAKLKPVYDSLDAVRRCALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDA
YK
1
162
2B72
1
162
P00720
A
1
1
162
1
CYS
engineered mutation
THR
54
2B72
A
P00720
UNP
54
54
1
CYS
engineered mutation
ALA
97
2B72
A
P00720
UNP
97
97
1
LEU
engineered mutation
ALA
99
2B72
A
P00720
UNP
99
99
3
anti-parallel
anti-parallel
A
ARG
14
A
ARG
14
A
LYS
19
A
LYS
19
A
TYR
25
A
TYR
25
A
GLY
28
A
GLY
28
A
HIS
31
A
HIS
31
A
THR
34
A
THR
34
BINDING SITE FOR RESIDUE CL A 173
A
CL
173
Software
5
BINDING SITE FOR RESIDUE CL A 178
A
CL
178
Software
4
BINDING SITE FOR RESIDUE BME A 901
A
BME
901
Software
2
BINDING SITE FOR RESIDUE BME A 902
A
BME
902
Software
6
A
THR
142
A
THR
142
5
1_555
A
ASN
144
A
ASN
144
5
1_555
A
ARG
145
A
ARG
145
5
1_555
A
HOH
932
F
HOH
5
1_555
A
HOH
1013
F
HOH
5
1_555
A
LYS
135
A
LYS
135
4
3_665
A
SER
136
A
SER
136
4
3_665
A
HOH
937
F
HOH
4
1_555
A
HOH
942
F
HOH
4
1_555
A
ASP
72
A
ASP
72
2
5_555
A
BME
902
E
BME
2
1_555
A
ASN
68
A
ASN
68
6
5_555
A
ASP
72
A
ASP
72
6
5_555
A
ALA
93
A
ALA
93
6
1_555
A
ARG
96
A
ARG
96
6
1_555
A
BME
901
D
BME
6
1_555
A
HOH
922
F
HOH
6
1_555
154
P 32 2 1