0.016401
0.000000
0.000000
0.000000
0.016401
0.000000
0.000000
0.000000
0.006593
0.00000
0.00000
0.00000
Chrencik, J.E.
Kuhn, P.
Accelerated Technologies Center for Gene to 3D Structure (ATCG3D)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
60.972
60.972
151.681
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
S
N
305
N
O
N
306
N
O
N
307
N
O
N
308
N
O
N
309
N
N
N
310
S
C
N
311
N
C
N
312
N
O
N
313
R
C
N
314
N
O
N
315
N
C
N
316
N
O
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
N
Y
335
N
C
Y
336
N
C
Y
337
N
C
Y
338
N
C
Y
339
N
C
N
340
N
O
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
N
N
354
S
C
N
355
N
C
N
356
N
O
N
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
N
364
N
O
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
N
N
378
S
C
N
379
N
C
N
380
N
O
N
381
N
C
N
382
N
C
N
383
N
C
N
384
N
O
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
doub
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
doub
Y
326
N
sing
Y
327
N
sing
N
328
N
sing
Y
329
N
sing
Y
330
N
doub
N
331
N
sing
Y
332
N
doub
N
333
N
sing
Y
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
Y
349
N
doub
Y
350
N
sing
Y
351
N
sing
N
352
N
sing
Y
353
N
doub
N
354
N
sing
Y
355
N
doub
N
356
N
sing
Y
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
UK
Structure
STRUE6
2005
0969-2126
14
321
330
10.1016/j.str.2005.11.011
16472751
Structure and thermodynamic characterization of the EphB4/Ephrin-B2 antagonist peptide complex reveals the determinants for receptor specificity.
2006
10.2210/pdb2bba/pdb
pdb_00002bba
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2005-05-25
ADSC QUANTUM 4
Si(220)
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
5.0.1
ALS
1.0
SYNCHROTRON
ALS BEAMLINE 5.0.1
21087.953
Ephrin type-B receptor 4
2.7.1.112
Ligand Binding Domain
1
man
polymer
1707.906
Agonist peptide
1
syn
polymer
96.063
SULFATE ION
2
syn
non-polymer
18.015
water
223
nat
water
Tyrosine-protein kinase receptor HTK
no
no
HHHHHEETLLNTKLETADLKWVTFPQVDGQWEELSGLDEEQHSVRTYEVCDVQRAPGQAHWLRTGWVPRRGAVHVYATLR
FTMLECLSLPRAGRSCKETFTVFYYESDADTATALTPAWMENPYIKVDTVAAEHLTRKRPGAEATGKVNVKTLRLGPLSK
AGFYLAFQDQGACMALLSLHLFYKK
HHHHHEETLLNTKLETADLKWVTFPQVDGQWEELSGLDEEQHSVRTYEVCDVQRAPGQAHWLRTGWVPRRGAVHVYATLR
FTMLECLSLPRAGRSCKETFTVFYYESDADTATALTPAWMENPYIKVDTVAAEHLTRKRPGAEATGKVNVKTLRLGPLSK
AGFYLAFQDQGACMALLSLHLFYKK
A
ATCG3D_13
polypeptide(L)
no
no
TNYLFSPNGPIARAW
TNYLFSPNGPIARAW
P
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
fall armyworm
Spodoptera
sample
EPHB4, HTK
9606
Homo sapiens
7108
Spodoptera frugiperda
HIi-5
plasmid
pBac6
1
3.09
60.20
VAPOR DIFFUSION, SITTING DROP
7.8
2.2 M Ammonium Sulfate, 200 mM NaCl, pH 7.8, VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
Accelerated Technologies Center for Gene to 3D Structure
ATCG3D
PSI, Protein Structure Initiative
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Advisory
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2006-07-18
1
1
2008-05-01
1
2
2011-07-13
1
3
2023-08-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2005-10-17
REL
REL
SO4
SULFATE ION
HOH
water
Synthetic peptide
sample
1NUK
PDB entry 1NUK
PDB
experimental model
SO4
1
3
SO4
SO4
1
A
SO4
2
3
SO4
SO4
2
A
HOH
301
4
HOH
HOH
301
A
HOH
302
4
HOH
HOH
302
A
HOH
304
4
HOH
HOH
304
A
HOH
306
4
HOH
HOH
306
A
HOH
307
4
HOH
HOH
307
A
HOH
308
4
HOH
HOH
308
A
HOH
309
4
HOH
HOH
309
A
HOH
310
4
HOH
HOH
310
A
HOH
311
4
HOH
HOH
311
A
HOH
312
4
HOH
HOH
312
A
HOH
313
4
HOH
HOH
313
A
HOH
314
4
HOH
HOH
314
A
HOH
315
4
HOH
HOH
315
A
HOH
316
4
HOH
HOH
316
A
HOH
317
4
HOH
HOH
317
A
HOH
318
4
HOH
HOH
318
A
HOH
319
4
HOH
HOH
319
A
HOH
320
4
HOH
HOH
320
A
HOH
323
4
HOH
HOH
323
A
HOH
324
4
HOH
HOH
324
A
HOH
325
4
HOH
HOH
325
A
HOH
328
4
HOH
HOH
328
A
HOH
329
4
HOH
HOH
329
A
HOH
330
4
HOH
HOH
330
A
HOH
331
4
HOH
HOH
331
A
HOH
333
4
HOH
HOH
333
A
HOH
334
4
HOH
HOH
334
A
HOH
335
4
HOH
HOH
335
A
HOH
336
4
HOH
HOH
336
A
HOH
337
4
HOH
HOH
337
A
HOH
338
4
HOH
HOH
338
A
HOH
339
4
HOH
HOH
339
A
HOH
340
4
HOH
HOH
340
A
HOH
341
4
HOH
HOH
341
A
HOH
342
4
HOH
HOH
342
A
HOH
343
4
HOH
HOH
343
A
HOH
344
4
HOH
HOH
344
A
HOH
345
4
HOH
HOH
345
A
HOH
346
4
HOH
HOH
346
A
HOH
348
4
HOH
HOH
348
A
HOH
349
4
HOH
HOH
349
A
HOH
350
4
HOH
HOH
350
A
HOH
351
4
HOH
HOH
351
A
HOH
352
4
HOH
HOH
352
A
HOH
353
4
HOH
HOH
353
A
HOH
354
4
HOH
HOH
354
A
HOH
356
4
HOH
HOH
356
A
HOH
357
4
HOH
HOH
357
A
HOH
358
4
HOH
HOH
358
A
HOH
359
4
HOH
HOH
359
A
HOH
360
4
HOH
HOH
360
A
HOH
361
4
HOH
HOH
361
A
HOH
362
4
HOH
HOH
362
A
HOH
363
4
HOH
HOH
363
A
HOH
364
4
HOH
HOH
364
A
HOH
366
4
HOH
HOH
366
A
HOH
367
4
HOH
HOH
367
A
HOH
368
4
HOH
HOH
368
A
HOH
369
4
HOH
HOH
369
A
HOH
370
4
HOH
HOH
370
A
HOH
371
4
HOH
HOH
371
A
HOH
372
4
HOH
HOH
372
A
HOH
373
4
HOH
HOH
373
A
HOH
374
4
HOH
HOH
374
A
HOH
375
4
HOH
HOH
375
A
HOH
377
4
HOH
HOH
377
A
HOH
378
4
HOH
HOH
378
A
HOH
379
4
HOH
HOH
379
A
HOH
380
4
HOH
HOH
380
A
HOH
381
4
HOH
HOH
381
A
HOH
382
4
HOH
HOH
382
A
HOH
383
4
HOH
HOH
383
A
HOH
384
4
HOH
HOH
384
A
HOH
385
4
HOH
HOH
385
A
HOH
386
4
HOH
HOH
386
A
HOH
387
4
HOH
HOH
387
A
HOH
388
4
HOH
HOH
388
A
HOH
389
4
HOH
HOH
389
A
HOH
401
4
HOH
HOH
401
A
HOH
402
4
HOH
HOH
402
A
HOH
403
4
HOH
HOH
403
A
HOH
404
4
HOH
HOH
404
A
HOH
405
4
HOH
HOH
405
A
HOH
407
4
HOH
HOH
407
A
HOH
410
4
HOH
HOH
410
A
HOH
411
4
HOH
HOH
411
A
HOH
412
4
HOH
HOH
412
A
HOH
413
4
HOH
HOH
413
A
HOH
415
4
HOH
HOH
415
A
HOH
416
4
HOH
HOH
416
A
HOH
417
4
HOH
HOH
417
A
HOH
419
4
HOH
HOH
419
A
HOH
420
4
HOH
HOH
420
A
HOH
421
4
HOH
HOH
421
A
HOH
422
4
HOH
HOH
422
A
HOH
423
4
HOH
HOH
423
A
HOH
424
4
HOH
HOH
424
A
HOH
426
4
HOH
HOH
426
A
HOH
427
4
HOH
HOH
427
A
HOH
428
4
HOH
HOH
428
A
HOH
429
4
HOH
HOH
429
A
HOH
430
4
HOH
HOH
430
A
HOH
432
4
HOH
HOH
432
A
HOH
433
4
HOH
HOH
433
A
HOH
434
4
HOH
HOH
434
A
HOH
435
4
HOH
HOH
435
A
HOH
437
4
HOH
HOH
437
A
HOH
438
4
HOH
HOH
438
A
HOH
439
4
HOH
HOH
439
A
HOH
440
4
HOH
HOH
440
A
HOH
441
4
HOH
HOH
441
A
HOH
442
4
HOH
HOH
442
A
HOH
443
4
HOH
HOH
443
A
HOH
444
4
HOH
HOH
444
A
HOH
445
4
HOH
HOH
445
A
HOH
446
4
HOH
HOH
446
A
HOH
447
4
HOH
HOH
447
A
HOH
448
4
HOH
HOH
448
A
HOH
449
4
HOH
HOH
449
A
HOH
450
4
HOH
HOH
450
A
HOH
451
4
HOH
HOH
451
A
HOH
452
4
HOH
HOH
452
A
HOH
453
4
HOH
HOH
453
A
HOH
454
4
HOH
HOH
454
A
HOH
457
4
HOH
HOH
457
A
HOH
458
4
HOH
HOH
458
A
HOH
459
4
HOH
HOH
459
A
HOH
460
4
HOH
HOH
460
A
HOH
461
4
HOH
HOH
461
A
HOH
465
4
HOH
HOH
465
A
HOH
466
4
HOH
HOH
466
A
HOH
468
4
HOH
HOH
468
A
HOH
469
4
HOH
HOH
469
A
HOH
471
4
HOH
HOH
471
A
HOH
472
4
HOH
HOH
472
A
HOH
473
4
HOH
HOH
473
A
HOH
474
4
HOH
HOH
474
A
HOH
475
4
HOH
HOH
475
A
HOH
476
4
HOH
HOH
476
A
HOH
478
4
HOH
HOH
478
A
HOH
479
4
HOH
HOH
479
A
HOH
480
4
HOH
HOH
480
A
HOH
483
4
HOH
HOH
483
A
HOH
484
4
HOH
HOH
484
A
HOH
485
4
HOH
HOH
485
A
HOH
486
4
HOH
HOH
486
A
HOH
487
4
HOH
HOH
487
A
HOH
489
4
HOH
HOH
489
A
HOH
491
4
HOH
HOH
491
A
HOH
492
4
HOH
HOH
492
A
HOH
494
4
HOH
HOH
494
A
HOH
495
4
HOH
HOH
495
A
HOH
496
4
HOH
HOH
496
A
HOH
497
4
HOH
HOH
497
A
HOH
498
4
HOH
HOH
498
A
HOH
499
4
HOH
HOH
499
A
HOH
500
4
HOH
HOH
500
A
HOH
501
4
HOH
HOH
501
A
HOH
503
4
HOH
HOH
503
A
HOH
504
4
HOH
HOH
504
A
HOH
505
4
HOH
HOH
505
A
HOH
506
4
HOH
HOH
506
A
HOH
507
4
HOH
HOH
507
A
HOH
508
4
HOH
HOH
508
A
HOH
509
4
HOH
HOH
509
A
HOH
510
4
HOH
HOH
510
A
HOH
512
4
HOH
HOH
512
A
HOH
513
4
HOH
HOH
513
A
HOH
514
4
HOH
HOH
514
A
HOH
515
4
HOH
HOH
515
A
HOH
516
4
HOH
HOH
516
A
HOH
517
4
HOH
HOH
517
A
HOH
518
4
HOH
HOH
518
A
HOH
519
4
HOH
HOH
519
A
HOH
520
4
HOH
HOH
520
A
HOH
522
4
HOH
HOH
522
A
HOH
524
4
HOH
HOH
524
A
HOH
525
4
HOH
HOH
525
A
HOH
526
4
HOH
HOH
526
A
HOH
527
4
HOH
HOH
527
A
HOH
530
4
HOH
HOH
530
A
HOH
531
4
HOH
HOH
531
A
HOH
533
4
HOH
HOH
533
A
HOH
535
4
HOH
HOH
535
A
HOH
536
4
HOH
HOH
536
A
HOH
537
4
HOH
HOH
537
A
HOH
538
4
HOH
HOH
538
A
HOH
539
4
HOH
HOH
539
A
HOH
540
4
HOH
HOH
540
A
HOH
541
4
HOH
HOH
541
A
HOH
542
4
HOH
HOH
542
A
HOH
544
4
HOH
HOH
544
A
HOH
545
4
HOH
HOH
545
A
HOH
546
4
HOH
HOH
546
A
HOH
548
4
HOH
HOH
548
A
HOH
549
4
HOH
HOH
549
A
HOH
550
4
HOH
HOH
550
A
HOH
552
4
HOH
HOH
552
A
HOH
553
4
HOH
HOH
553
A
HOH
556
4
HOH
HOH
556
A
HOH
557
4
HOH
HOH
557
A
HOH
558
4
HOH
HOH
558
A
HOH
559
4
HOH
HOH
559
A
HOH
560
4
HOH
HOH
560
A
HOH
561
4
HOH
HOH
561
A
HOH
305
4
HOH
HOH
305
P
HOH
322
4
HOH
HOH
322
P
HOH
355
4
HOH
HOH
355
P
HOH
365
4
HOH
HOH
365
P
HOH
376
4
HOH
HOH
376
P
HOH
400
4
HOH
HOH
400
P
HOH
414
4
HOH
HOH
414
P
HOH
456
4
HOH
HOH
456
P
HOH
463
4
HOH
HOH
463
P
HOH
467
4
HOH
HOH
467
P
HOH
470
4
HOH
HOH
470
P
HOH
488
4
HOH
HOH
488
P
HOH
511
4
HOH
HOH
511
P
HOH
523
4
HOH
HOH
523
P
HOH
528
4
HOH
HOH
528
P
HOH
532
4
HOH
HOH
532
P
HOH
551
4
HOH
HOH
551
P
HOH
555
4
HOH
HOH
555
P
HIS
12
n
1
HIS
12
A
HIS
13
n
2
HIS
13
A
HIS
14
n
3
HIS
14
A
HIS
15
n
4
HIS
15
A
HIS
16
n
5
HIS
16
A
GLU
17
n
6
GLU
17
A
GLU
18
n
7
GLU
18
A
THR
19
n
8
THR
19
A
LEU
20
n
9
LEU
20
A
LEU
21
n
10
LEU
21
A
ASN
22
n
11
ASN
22
A
THR
23
n
12
THR
23
A
LYS
24
n
13
LYS
24
A
LEU
25
n
14
LEU
25
A
GLU
26
n
15
GLU
26
A
THR
27
n
16
THR
27
A
ALA
28
n
17
ALA
28
A
ASP
29
n
18
ASP
29
A
LEU
30
n
19
LEU
30
A
LYS
31
n
20
LYS
31
A
TRP
32
n
21
TRP
32
A
VAL
33
n
22
VAL
33
A
THR
34
n
23
THR
34
A
PHE
35
n
24
PHE
35
A
PRO
36
n
25
PRO
36
A
GLN
37
n
26
GLN
37
A
VAL
38
n
27
VAL
38
A
ASP
39
n
28
ASP
39
A
GLY
40
n
29
GLY
40
A
GLN
41
n
30
GLN
41
A
TRP
42
n
31
TRP
42
A
GLU
43
n
32
GLU
43
A
GLU
44
n
33
GLU
44
A
LEU
45
n
34
LEU
45
A
SER
46
n
35
SER
46
A
GLY
47
n
36
GLY
47
A
LEU
48
n
37
LEU
48
A
ASP
49
n
38
ASP
49
A
GLU
50
n
39
GLU
50
A
GLU
51
n
40
GLU
51
A
GLN
52
n
41
GLN
52
A
HIS
53
n
42
HIS
53
A
SER
54
n
43
SER
54
A
VAL
55
n
44
VAL
55
A
ARG
56
n
45
ARG
56
A
THR
57
n
46
THR
57
A
TYR
58
n
47
TYR
58
A
GLU
59
n
48
GLU
59
A
VAL
60
n
49
VAL
60
A
CYS
61
n
50
CYS
61
A
ASP
62
n
51
ASP
62
A
VAL
63
n
52
VAL
63
A
GLN
64
n
53
GLN
64
A
ARG
65
n
54
ARG
65
A
ALA
66
n
55
ALA
66
A
PRO
67
n
56
PRO
67
A
GLY
68
n
57
GLY
68
A
GLN
69
n
58
GLN
69
A
ALA
70
n
59
ALA
70
A
HIS
71
n
60
HIS
71
A
TRP
72
n
61
TRP
72
A
LEU
73
n
62
LEU
73
A
ARG
74
n
63
ARG
74
A
THR
75
n
64
THR
75
A
GLY
76
n
65
GLY
76
A
TRP
77
n
66
TRP
77
A
VAL
78
n
67
VAL
78
A
PRO
79
n
68
PRO
79
A
ARG
80
n
69
ARG
80
A
ARG
81
n
70
ARG
81
A
GLY
82
n
71
GLY
82
A
ALA
83
n
72
ALA
83
A
VAL
84
n
73
VAL
84
A
HIS
85
n
74
HIS
85
A
VAL
86
n
75
VAL
86
A
TYR
87
n
76
TYR
87
A
ALA
88
n
77
ALA
88
A
THR
89
n
78
THR
89
A
LEU
90
n
79
LEU
90
A
ARG
91
n
80
ARG
91
A
PHE
92
n
81
PHE
92
A
THR
93
n
82
THR
93
A
MET
94
n
83
MET
94
A
LEU
95
n
84
LEU
95
A
GLU
96
n
85
GLU
96
A
CYS
97
n
86
CYS
97
A
LEU
98
n
87
LEU
98
A
SER
99
n
88
SER
99
A
LEU
100
n
89
LEU
100
A
PRO
101
n
90
PRO
101
A
ARG
102
n
91
ARG
102
A
ALA
103
n
92
ALA
103
A
GLY
104
n
93
GLY
104
A
ARG
105
n
94
ARG
105
A
SER
106
n
95
SER
106
A
CYS
107
n
96
CYS
107
A
LYS
108
n
97
LYS
108
A
GLU
109
n
98
GLU
109
A
THR
110
n
99
THR
110
A
PHE
111
n
100
PHE
111
A
THR
112
n
101
THR
112
A
VAL
113
n
102
VAL
113
A
PHE
114
n
103
PHE
114
A
TYR
115
n
104
TYR
115
A
TYR
116
n
105
TYR
116
A
GLU
117
n
106
GLU
117
A
SER
118
n
107
SER
118
A
ASP
119
n
108
ASP
119
A
ALA
120
n
109
ALA
120
A
ASP
121
n
110
ASP
121
A
THR
122
n
111
THR
122
A
ALA
123
n
112
ALA
123
A
THR
124
n
113
THR
124
A
ALA
125
n
114
ALA
125
A
LEU
126
n
115
LEU
126
A
THR
127
n
116
THR
127
A
PRO
128
n
117
PRO
128
A
ALA
129
n
118
ALA
129
A
TRP
130
n
119
TRP
130
A
MET
131
n
120
MET
131
A
GLU
132
n
121
GLU
132
A
ASN
133
n
122
ASN
133
A
PRO
134
n
123
PRO
134
A
TYR
135
n
124
TYR
135
A
ILE
136
n
125
ILE
136
A
LYS
137
n
126
LYS
137
A
VAL
138
n
127
VAL
138
A
ASP
139
n
128
ASP
139
A
THR
140
n
129
THR
140
A
VAL
141
n
130
VAL
141
A
ALA
142
n
131
ALA
142
A
ALA
143
n
132
ALA
143
A
GLU
144
n
133
GLU
144
A
HIS
145
n
134
HIS
145
A
LEU
146
n
135
LEU
146
A
THR
147
n
136
THR
147
A
ARG
148
n
137
ARG
148
A
LYS
149
n
138
LYS
149
A
ARG
150
n
139
ARG
150
A
PRO
151
n
140
PRO
151
A
GLY
152
n
141
GLY
152
A
ALA
153
n
142
ALA
153
A
GLU
154
n
143
GLU
154
A
ALA
155
n
144
ALA
155
A
THR
156
n
145
THR
156
A
GLY
157
n
146
GLY
157
A
LYS
158
n
147
LYS
158
A
VAL
159
n
148
VAL
159
A
ASN
160
n
149
ASN
160
A
VAL
161
n
150
VAL
161
A
LYS
162
n
151
LYS
162
A
THR
163
n
152
THR
163
A
LEU
164
n
153
LEU
164
A
ARG
165
n
154
ARG
165
A
LEU
166
n
155
LEU
166
A
GLY
167
n
156
GLY
167
A
PRO
168
n
157
PRO
168
A
LEU
169
n
158
LEU
169
A
SER
170
n
159
SER
170
A
LYS
171
n
160
LYS
171
A
ALA
172
n
161
ALA
172
A
GLY
173
n
162
GLY
173
A
PHE
174
n
163
PHE
174
A
TYR
175
n
164
TYR
175
A
LEU
176
n
165
LEU
176
A
ALA
177
n
166
ALA
177
A
PHE
178
n
167
PHE
178
A
GLN
179
n
168
GLN
179
A
ASP
180
n
169
ASP
180
A
GLN
181
n
170
GLN
181
A
GLY
182
n
171
GLY
182
A
ALA
183
n
172
ALA
183
A
CYS
184
n
173
CYS
184
A
MET
185
n
174
MET
185
A
ALA
186
n
175
ALA
186
A
LEU
187
n
176
LEU
187
A
LEU
188
n
177
LEU
188
A
SER
189
n
178
SER
189
A
LEU
190
n
179
LEU
190
A
HIS
191
n
180
HIS
191
A
LEU
192
n
181
LEU
192
A
PHE
193
n
182
PHE
193
A
TYR
194
n
183
TYR
194
A
LYS
195
n
184
LYS
195
A
LYS
196
n
185
LYS
196
A
n
1
250
P
ASN
251
n
2
ASN
251
P
TYR
252
n
3
TYR
252
P
LEU
253
n
4
LEU
253
P
PHE
254
n
5
PHE
254
P
SER
255
n
6
SER
255
P
PRO
256
n
7
PRO
256
P
ASN
257
n
8
ASN
257
P
GLY
258
n
9
GLY
258
P
PRO
259
n
10
PRO
259
P
ILE
260
n
11
ILE
260
P
ALA
261
n
12
ALA
261
P
ARG
262
n
13
ARG
262
P
ALA
263
n
14
ALA
263
P
TRP
264
n
15
TRP
264
P
1.2085
-0.1014
-0.3499
0.2622
0.0787
0.4731
0.0000
0.0222
-0.0298
-0.0073
0.0028
-0.0081
-0.0146
-0.0283
-0.0028
-0.0478
-0.0009
0.0027
-0.0117
-0.0023
-0.0318
refined
24.6075
11.8278
51.1996
X-RAY DIFFRACTION
3.8875
0.9516
2.7544
1.6018
-0.3425
6.1088
-0.1978
0.1246
-0.2250
-0.1392
0.1081
-0.1418
0.2043
0.1535
0.0897
-0.0382
0.0060
0.0478
-0.0203
-0.0490
-0.0254
refined
31.4128
0.9273
39.8155
X-RAY DIFFRACTION
A
12
A
1
A
196
A
185
X-RAY DIFFRACTION
1
P
251
B
2
P
264
B
15
X-RAY DIFFRACTION
2
author_and_software_defined_assembly
PISA
2
dimeric
1750
-36
9990
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
HIS
16
A
N
HIS
5
A
O
LYS
196
A
O
LYS
185
A
O
LEU
187
A
O
LEU
176
A
N
TYR
58
A
N
TYR
47
A
O
VAL
55
A
O
VAL
44
A
N
GLY
47
A
N
GLY
36
A
N
HIS
16
A
N
HIS
5
A
O
LYS
196
A
O
LYS
185
A
O
PHE
193
A
O
PHE
182
A
N
TYR
87
A
N
TYR
76
A
N
VAL
86
A
N
VAL
75
A
O
LEU
166
A
O
LEU
155
A
N
PHE
35
A
N
PHE
24
A
O
TRP
72
A
O
TRP
61
A
N
LEU
73
A
N
LEU
62
A
O
PHE
178
A
O
PHE
167
A
O
PHE
174
A
O
PHE
163
A
N
VAL
78
A
N
VAL
67
A
N
PHE
35
A
N
PHE
24
A
O
TRP
72
A
O
TRP
61
A
N
LEU
73
A
N
LEU
62
A
O
PHE
178
A
O
PHE
167
A
O
ALA
177
A
O
ALA
166
A
N
PHE
114
A
N
PHE
103
A
N
TYR
115
A
N
TYR
104
A
O
ILE
136
A
O
ILE
125
1
A
CG
LYS
31
A
CG
LYS
20
1
Y
1
A
CD
LYS
31
A
CD
LYS
20
1
Y
1
A
CE
LYS
31
A
CE
LYS
20
1
Y
1
A
NZ
LYS
31
A
NZ
LYS
20
1
Y
1
A
CG
GLN
52
A
CG
GLN
41
1
Y
1
A
CD
GLN
52
A
CD
GLN
41
1
Y
1
A
OE1
GLN
52
A
OE1
GLN
41
1
Y
1
A
NE2
GLN
52
A
NE2
GLN
41
1
Y
1
A
CG
GLN
64
A
CG
GLN
53
1
Y
1
A
CD
GLN
64
A
CD
GLN
53
1
Y
1
A
OE1
GLN
64
A
OE1
GLN
53
1
Y
1
A
NE2
GLN
64
A
NE2
GLN
53
1
Y
1
A
CG
ARG
65
A
CG
ARG
54
1
Y
1
A
CD
ARG
65
A
CD
ARG
54
1
Y
1
A
NE
ARG
65
A
NE
ARG
54
1
Y
1
A
CZ
ARG
65
A
CZ
ARG
54
1
Y
1
A
NH1
ARG
65
A
NH1
ARG
54
1
Y
1
A
NH2
ARG
65
A
NH2
ARG
54
1
Y
1
A
CG
ARG
102
A
CG
ARG
91
1
Y
1
A
CD
ARG
102
A
CD
ARG
91
1
Y
1
A
NE
ARG
102
A
NE
ARG
91
1
Y
1
A
CZ
ARG
102
A
CZ
ARG
91
1
Y
1
A
NH1
ARG
102
A
NH1
ARG
91
1
Y
1
A
NH2
ARG
102
A
NH2
ARG
91
1
Y
1
A
CG
ARG
105
A
CG
ARG
94
1
Y
1
A
CD
ARG
105
A
CD
ARG
94
1
Y
1
A
NE
ARG
105
A
NE
ARG
94
1
Y
1
A
CZ
ARG
105
A
CZ
ARG
94
1
Y
1
A
NH1
ARG
105
A
NH1
ARG
94
1
Y
1
A
NH2
ARG
105
A
NH2
ARG
94
1
Y
1
A
CG
GLU
144
A
CG
GLU
133
1
Y
1
A
CD
GLU
144
A
CD
GLU
133
1
Y
1
A
OE1
GLU
144
A
OE1
GLU
133
1
Y
1
A
OE2
GLU
144
A
OE2
GLU
133
1
Y
1
A
CG
GLU
154
A
CG
GLU
143
1
Y
1
A
CD
GLU
154
A
CD
GLU
143
1
Y
1
A
OE1
GLU
154
A
OE1
GLU
143
1
Y
1
A
OE2
GLU
154
A
OE2
GLU
143
1
Y
1
A
CG
LYS
195
A
CG
LYS
184
1
Y
1
A
CD
LYS
195
A
CD
LYS
184
1
Y
1
A
CE
LYS
195
A
CE
LYS
184
1
Y
1
A
NZ
LYS
195
A
NZ
LYS
184
1
Y
1
P
THR
250
B
THR
1
1
Y
1
A
A
ND1
C
HIS
LYS
12
196
1.64
1
A
A
CD2
ND1
HIS
HIS
12
15
1.94
1
A
A
ND1
O
HIS
LYS
12
196
2.17
1
A
A
HIS
HIS
12
13
147.04
1
A
A
ARG
ALA
102
103
144.55
1
A
HIS
12
0.094
SIDE CHAIN
1
-8.83
1.30
121.40
112.57
A
A
A
CB
CG
ND1
HIS
HIS
HIS
12
12
12
N
1
-3.27
0.50
120.30
117.03
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
148
148
148
N
1
-5.50
0.50
120.30
114.80
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
150
150
150
N
1
4.06
0.50
120.30
124.36
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
150
150
150
N
1
A
A
CG
CD2
HIS
HIS
12
12
-0.106
0.017
1.353
1.247
N
1
A
ALA
28
-118.36
-139.21
1
A
CYS
61
-155.45
59.71
1
A
ARG
81
57.29
-135.74
1
A
ARG
102
52.93
16.28
1
A
ASN
133
64.84
86.70
11.498
0.21
0.00
0.00
0.21
0.00
-0.42
0.953
0.949
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.19135
0.17436
0.19
0.1761
1.65
40.0
3533
31786
10.0
99.92
2.352
0.042
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
2.0
MOLECULAR REPLACEMENT
0.081
0.078
0.80
0.80
1.20
PDB entry 1NUK
MAXIMUM LIKELIHOOD
MASK
1.65
40.0
223
1791
10
0
1558
0.018
0.021
1628
0.002
0.020
1422
1.731
1.938
2229
0.888
3.000
3288
7.475
5.000
201
32.303
22.958
71
10.131
15.000
240
16.174
15.000
9
0.117
0.200
245
0.010
0.020
1819
0.001
0.020
348
0.272
0.200
240
0.202
0.200
1331
0.182
0.200
741
0.087
0.200
893
0.162
0.200
146
0.001
0.200
1
0.342
0.200
12
0.294
0.200
62
0.513
0.200
13
1.276
1.500
1076
0.350
1.500
407
1.730
2.000
1606
2.790
3.000
710
3.968
4.500
622
0.202
0.159
1.693
243
2286
20
98.94
1.65
40
2BBA
32786
1.0
1.0
0.039
1
42.7
3.7
1.65
1.71
7.2
0.208
1
3.2
refinement
REFMAC
5.2.0005
data reduction
HKL-2000
data scaling
SCALEPACK
phasing
AMoRE
Crystal Structure and Thermodynamic Characterization of the EphB4 Receptor in Complex with an ephrin-B2 Antagonist Peptide Reveals the Determinants for Receptor Specificity.
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
4
N
N
A
LYS
24
A
LYS
13
HELX_P
A
GLU
26
A
GLU
15
5
1
3
A
GLU
96
A
GLU
85
HELX_P
A
LEU
100
A
LEU
89
5
2
5
P
ILE
260
B
ILE
11
HELX_P
P
TRP
264
B
TRP
15
5
3
5
disulf
2.068
A
CYS
61
A
SG
CYS
50
1_555
A
CYS
184
A
SG
CYS
173
1_555
disulf
2.073
A
CYS
97
A
SG
CYS
86
1_555
A
CYS
107
A
SG
CYS
96
1_555
SIGNALING PROTEIN
EphB4, tumorigenesis, angiogenesis, peptide mimetics, SIGNALING PROTEIN, Structural Genomics, PSI-2, Protein Structure Initiative, Accelerated Technologies Center for Gene to 3D Structure, ATCG3D
A
PHE
35
A
PHE
24
1
A
PRO
36
A
PRO
25
-1.49
A
THR
127
A
THR
116
1
A
PRO
128
A
PRO
117
-8.05
A
ASN
133
A
ASN
122
1
A
PRO
134
A
PRO
123
20.98
A
GLY
167
A
GLY
156
1
A
PRO
168
A
PRO
157
3.52
EPHB4_HUMAN
UNP
1
17
P54760
2BBA
PDB
2
2BBA
17
196
2BBA
17
196
P54760
A
1
6
185
250
264
2BBA
250
264
2BBA
P
2
1
15
1
expression tag
HIS
12
2BBA
A
P54760
UNP
1
1
expression tag
HIS
13
2BBA
A
P54760
UNP
2
1
expression tag
HIS
14
2BBA
A
P54760
UNP
3
1
expression tag
HIS
15
2BBA
A
P54760
UNP
4
1
expression tag
HIS
16
2BBA
A
P54760
UNP
5
4
4
4
5
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
HIS
16
A
HIS
5
A
ASN
22
A
ASN
11
A
CYS
184
A
CYS
173
A
LYS
196
A
LYS
185
A
SER
54
A
SER
43
A
CYS
61
A
CYS
50
A
GLU
43
A
GLU
32
A
LEU
48
A
LEU
37
A
HIS
16
A
HIS
5
A
ASN
22
A
ASN
11
A
CYS
184
A
CYS
173
A
LYS
196
A
LYS
185
A
VAL
86
A
VAL
75
A
MET
94
A
MET
83
A
ASN
160
A
ASN
149
A
LEU
166
A
LEU
155
A
VAL
33
A
VAL
22
A
PHE
35
A
PHE
24
A
ALA
70
A
ALA
59
A
ARG
74
A
ARG
63
A
GLY
173
A
GLY
162
A
GLN
181
A
GLN
170
A
VAL
78
A
VAL
67
A
PRO
79
A
PRO
68
A
VAL
33
A
VAL
22
A
PHE
35
A
PHE
24
A
ALA
70
A
ALA
59
A
ARG
74
A
ARG
63
A
GLY
173
A
GLY
162
A
GLN
181
A
GLN
170
A
THR
110
A
THR
99
A
SER
118
A
SER
107
A
ILE
136
A
ILE
125
A
ALA
142
A
ALA
131
BINDING SITE FOR RESIDUE SO4 A 1
A
SO4
1
Software
7
BINDING SITE FOR RESIDUE SO4 A 2
A
SO4
2
Software
6
A
LYS
24
A
LYS
13
7
1_555
A
THR
89
A
THR
78
7
1_555
A
ARG
91
A
ARG
80
7
1_555
A
PRO
134
A
PRO
123
7
6_555
A
HIS
191
A
HIS
180
7
1_555
A
HOH
309
E
HOH
7
6_555
A
HOH
318
E
HOH
7
1_555
A
HIS
145
A
HIS
134
6
1_555
A
LYS
158
A
LYS
147
6
8_665
A
LYS
158
A
LYS
147
6
1_555
A
HOH
330
E
HOH
6
1_555
A
HOH
349
E
HOH
6
1_555
A
HOH
544
E
HOH
6
4_554
92
P 41 21 2