1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Schein, C.H. Oezguen, N. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Peptides 0196-9781 27 1676 1684 10.1016/j.peptides.2006.01.018 16540201 NMR structure of the viral peptide linked to the genome (VPg) of poliovirus. 2006 US Proteins PSFGEY 0867 1097-0134 10.1002/prot.20891 16498624 Novel, structure-based mechanism for uridylylation of the genome-linked peptide (VPg) of picornaviruses 2006 10.2210/pdb2bbl/pdb pdb_00002bbl 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 2357.749 Genome linked protein VPg residues 1-22 1 syn polymer no no GAYTGLPNKKPNVPTIRTAKVQ GAYTGLPNKKPNVPTIRTAKVQ A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2006-03-28 1 1 2008-05-01 1 2 2011-07-13 1 3 2022-03-09 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name NMR structures of the peptide linked to the genome (VPg) of poliovirus RCSB Y RCSB 2005-10-17 REL REL This sequence occurs naturally in human poliovirus serotype 1. sample Spectra were collected at 283K target function 50 10 2D TOCSY 2D NOESY DQF-COSY 10mM sodium phosphate 7.2 atmospheric atm 283 K Refinement of the NOE assignment is performed iteratively. NOAH passes geometrical constraints derived from the NOE list to DIAMOD. DIAMOD calculates a bundle of structures with least violation of the constraints. The new bundle of structures is the basis for refinement of the assignments in NOAH. automatic NOE assignment in combination with distance geometry 1 fewest violations VPg 2.78 mM, 0.01 M sodium phosphate buffer, pH 7.2, 4M deuterated Trimethylamine oxide, 10% D2O 10%D2O Mumenthaler, C. et al structure solution NOAH 2.0 Guentert, P. et al structure solution DIAMOD 2.2 data analysis Felix Guentert, P. et al refinement DIAMOD 2.2 750 Varian UNITYPLUS 600 Varian UNITYPLUS GLY 1 n 1 GLY 1 A ALA 2 n 2 ALA 2 A TYR 3 n 3 TYR 3 A THR 4 n 4 THR 4 A GLY 5 n 5 GLY 5 A LEU 6 n 6 LEU 6 A PRO 7 n 7 PRO 7 A ASN 8 n 8 ASN 8 A LYS 9 n 9 LYS 9 A LYS 10 n 10 LYS 10 A PRO 11 n 11 PRO 11 A ASN 12 n 12 ASN 12 A VAL 13 n 13 VAL 13 A PRO 14 n 14 PRO 14 A THR 15 n 15 THR 15 A ILE 16 n 16 ILE 16 A ARG 17 n 17 ARG 17 A THR 18 n 18 THR 18 A ALA 19 n 19 ALA 19 A LYS 20 n 20 LYS 20 A VAL 21 n 21 VAL 21 A GLN 22 n 22 GLN 22 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A ASN 8 64.73 102.68 1 A LYS 9 -131.86 -83.76 1 A LYS 10 -178.97 -63.97 1 A ASN 12 -166.48 83.34 2 A ALA 2 61.58 172.67 2 A THR 4 -149.02 -49.31 2 A ASN 8 57.32 75.69 2 A LYS 9 -114.24 -81.98 2 A LYS 10 -179.38 -62.94 2 A ASN 12 -163.50 90.59 3 A ALA 2 58.52 171.40 3 A ASN 8 61.48 103.20 3 A LYS 9 -130.12 -88.14 3 A LYS 10 -178.61 -66.08 3 A ASN 12 -172.06 96.25 4 A ALA 2 61.60 172.78 4 A THR 4 -147.90 -49.06 4 A ASN 8 61.41 77.16 4 A LYS 9 -115.28 -82.43 4 A LYS 10 -179.46 -63.17 4 A ASN 12 -164.56 90.08 5 A ALA 2 59.67 171.51 5 A ASN 8 64.03 103.68 5 A LYS 9 -131.76 -89.92 5 A LYS 10 -179.08 -66.63 5 A ASN 12 -172.29 96.90 6 A ASN 8 64.51 103.74 6 A LYS 9 -131.08 -87.84 6 A LYS 10 -178.88 -65.49 6 A ASN 12 -170.04 93.86 7 A ASN 8 63.78 115.19 7 A LYS 9 -134.39 -88.33 7 A LYS 10 -178.06 -60.71 7 A ASN 12 -140.17 55.81 8 A ASN 8 63.37 102.24 8 A LYS 9 -130.61 -87.18 8 A LYS 10 -178.53 -65.48 8 A ASN 12 -170.09 91.82 9 A ASN 8 37.45 90.48 9 A LYS 9 -116.29 -84.13 9 A LYS 10 -177.94 -64.29 9 A ASN 12 -169.17 84.09 10 A ASN 8 60.42 91.40 10 A LYS 9 -117.70 -89.44 10 A LYS 10 179.12 -64.99 10 A ASN 12 -171.30 90.91 NMR structures of the peptide linked to the genome (VPg) of poliovirus in a stabilizing solvent 1 N N A ILE 16 A ILE 16 HELX_P A GLN 22 A GLN 22 1 1 7 VIRAL PROTEIN peptide primer, RNA synthesis, uridylylation, viral replication, polymerase cofactor, VIRAL PROTEIN NP_740475 GB 1 1 25121847 GAYTGLPNKKPNVPTIRTAKVQ 1 22 2BBL 1 22 25121847 A 1 1 22 1 P 1