1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Schein, C.H.
Oezguen, N.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Peptides
0196-9781
27
1676
1684
10.1016/j.peptides.2006.01.018
16540201
NMR structure of the viral peptide linked to the genome (VPg) of poliovirus.
2006
US
Proteins
PSFGEY
0867
1097-0134
10.1002/prot.20891
16498624
Novel, structure-based mechanism for uridylylation of the genome-linked peptide (VPg) of picornaviruses
2006
10.2210/pdb2bbp/pdb
pdb_00002bbp
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
2357.749
Genome linked protein VPg
residues 1-22
1
syn
polymer
no
no
GAYTGLPNKKPNVPTIRTAKVQ
GAYTGLPNKKPNVPTIRTAKVQ
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2006-03-28
1
1
2008-05-01
1
2
2011-07-13
1
3
2022-03-09
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
NMR structures of the peptide linked to the genome (VPg) of poliovirus in a stabilizing solvent
RCSB
Y
RCSB
2005-10-17
REL
REL
This sequence occurs naturally in human poliovirus serotype 1.
sample
target function
50
10
2D NOESY
2D TOCSY
10 mM
7.2
1
atm
283
K
Refinement of the NOE assignment is performed iteratively. NOAH passes geometrical constraints derived from the NOE list to DIAMOD. DIAMOD calculates a bundle of structures with least violation of the constraints. The new bundle of structures is the basis for refinement of the assignments in NOAH.
automatic NOE assignment in combination with distance geometry
1
fewest violations
3.7 mM peptide, 10 mM Na phosphate buffer, pH 7.2, DSS, 10% D20, 90% H2O
10% D20, 90% H2O
Mumenthaler, C. et al.
structure solution
NOAH
2.0
Guentert, P. et al.
structure solution
DIAMOD
2.2
Accelerys
data analysis
Felix
Guentert, P. et al.
refinement
DIAMOD
2.2
600
Varian
UNITYPLUS
750
Varian
UNITYPLUS
GLY
1
n
1
GLY
1
A
ALA
2
n
2
ALA
2
A
TYR
3
n
3
TYR
3
A
THR
4
n
4
THR
4
A
GLY
5
n
5
GLY
5
A
LEU
6
n
6
LEU
6
A
PRO
7
n
7
PRO
7
A
ASN
8
n
8
ASN
8
A
LYS
9
n
9
LYS
9
A
LYS
10
n
10
LYS
10
A
PRO
11
n
11
PRO
11
A
ASN
12
n
12
ASN
12
A
VAL
13
n
13
VAL
13
A
PRO
14
n
14
PRO
14
A
THR
15
n
15
THR
15
A
ILE
16
n
16
ILE
16
A
ARG
17
n
17
ARG
17
A
THR
18
n
18
THR
18
A
ALA
19
n
19
ALA
19
A
LYS
20
n
20
LYS
20
A
VAL
21
n
21
VAL
21
A
GLN
22
n
22
GLN
22
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
ALA
2
-157.39
-61.18
1
A
TYR
3
49.36
91.49
1
A
ASN
8
-167.26
-46.92
1
A
LYS
9
-173.34
143.06
1
A
LYS
10
-17.75
96.67
1
A
PRO
11
-74.97
-73.54
1
A
THR
15
-154.80
86.61
1
A
ARG
17
34.94
73.51
1
A
THR
18
-150.36
-36.06
2
A
TYR
3
12.45
90.23
2
A
THR
4
-112.15
73.26
2
A
ASN
8
-166.83
-47.36
2
A
LYS
10
-22.18
98.04
2
A
PRO
11
-74.95
-71.37
2
A
THR
15
-150.77
86.53
2
A
THR
18
-143.88
-35.68
3
A
TYR
3
49.01
76.01
3
A
ASN
8
-168.26
-46.15
3
A
LYS
10
-23.18
98.14
3
A
ASN
12
-170.51
-43.84
3
A
THR
15
55.56
79.13
3
A
ILE
16
39.10
45.61
3
A
ARG
17
37.08
70.53
3
A
THR
18
-148.83
-25.54
4
A
ALA
2
-163.05
-51.68
4
A
TYR
3
52.09
91.93
4
A
ASN
8
-169.29
-47.00
4
A
LYS
10
-21.86
98.37
4
A
PRO
11
-75.05
-70.26
4
A
THR
15
-154.30
86.50
4
A
ARG
17
39.52
65.06
4
A
THR
18
-140.91
-36.30
5
A
TYR
3
44.50
88.66
5
A
ASN
8
-168.69
-48.15
5
A
LYS
10
-21.61
97.90
5
A
PRO
11
-75.01
-72.20
5
A
THR
18
-143.65
-37.93
5
A
LYS
20
-130.06
-98.89
5
A
VAL
21
-159.71
-58.76
6
A
TYR
3
175.84
53.46
6
A
THR
4
-106.35
77.22
6
A
ASN
8
-168.31
-48.99
6
A
LYS
10
-20.30
98.45
6
A
PRO
11
-74.93
-70.21
6
A
LYS
20
-116.07
73.92
7
A
ALA
2
68.19
115.92
7
A
TYR
3
-173.11
-27.31
7
A
LEU
6
-149.64
40.73
7
A
ASN
8
-167.58
-32.81
7
A
LYS
10
-29.87
101.36
8
A
TYR
3
48.50
86.50
8
A
LEU
6
36.26
57.15
8
A
ASN
8
-169.00
-54.06
8
A
LYS
9
178.03
140.18
8
A
LYS
10
-10.42
90.41
8
A
THR
15
-150.06
85.91
8
A
THR
18
-145.75
-37.62
9
A
ALA
2
68.34
115.86
9
A
TYR
3
-173.13
-27.29
9
A
LEU
6
-149.65
40.83
9
A
ASN
8
-167.54
-32.82
9
A
LYS
10
-29.80
101.34
10
A
TYR
3
48.50
86.49
10
A
LEU
6
36.29
57.14
10
A
ASN
8
-169.09
-54.04
10
A
LYS
9
178.06
140.20
10
A
LYS
10
-10.47
90.44
10
A
THR
15
-150.03
85.98
10
A
THR
18
-145.74
-37.55
NMR structures of the peptide linked to the genome (VPg) of poliovirus
1
N
N
VIRAL PROTEIN
VPg, RNA transcription primer, flexible structure, viral polymerase, picornavirus, VIRAL PROTEIN
POLG_POL1M
UNP
1
1544
P03300
GAYTGLPNKKPNVPTIRTAKVQ
1544
1565
2BBP
1
22
P03300
A
1
1
22
1
P 1