0.010183
0.005879
0.000000
0.000000
0.011759
0.000000
0.000000
0.000000
0.022883
0.00000
0.00000
0.00000
Schreuder, H.
Liesum, A.
Pohl, J.
Kruse, M.
Koyama, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
98.200
98.200
43.700
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C3 H8 O
60.095
ISOPROPYL ALCOHOL
2-PROPANOL
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
C
N
184
N
C
N
185
N
C
N
186
N
O
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
N
N
196
S
C
N
197
N
C
N
198
N
O
N
199
N
C
N
200
N
C
N
201
N
C
N
202
N
C
N
203
N
O
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
N
N
218
S
C
N
219
N
C
N
220
N
O
N
221
N
C
N
222
N
C
N
223
N
C
N
224
N
C
N
225
N
N
N
226
N
O
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
N
N
243
S
C
N
244
N
C
N
245
N
O
N
246
N
C
N
247
N
C
N
248
N
S
N
249
N
C
N
250
N
O
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
N
N
263
S
C
N
264
N
C
N
265
N
O
N
266
N
C
Y
267
N
C
Y
268
N
C
Y
269
N
C
Y
270
N
C
Y
271
N
C
Y
272
N
C
N
273
N
O
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
N
N
286
S
C
N
287
N
C
N
288
N
O
N
289
N
C
N
290
N
C
N
291
N
C
N
292
N
O
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
N
N
303
S
C
N
304
N
C
N
305
N
O
N
306
N
C
N
307
N
O
N
308
N
O
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
N
N
317
S
C
N
318
N
C
N
319
N
O
N
320
R
C
N
321
N
O
N
322
N
C
N
323
N
O
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
N
N
334
S
C
N
335
N
C
N
336
N
O
N
337
N
C
Y
338
N
C
Y
339
N
C
Y
340
N
C
Y
341
N
N
Y
342
N
C
Y
343
N
C
Y
344
N
C
Y
345
N
C
Y
346
N
C
N
347
N
O
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
N
N
361
S
C
N
362
N
C
N
363
N
O
N
364
N
C
Y
365
N
C
Y
366
N
C
Y
367
N
C
Y
368
N
C
Y
369
N
C
Y
370
N
C
N
371
N
O
N
372
N
O
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
N
N
385
S
C
N
386
N
C
N
387
N
O
N
388
N
C
N
389
N
C
N
390
N
C
N
391
N
O
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
doub
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
doub
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
doub
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
Y
259
N
doub
Y
260
N
sing
Y
261
N
sing
N
262
N
sing
Y
263
N
doub
N
264
N
sing
Y
265
N
doub
N
266
N
sing
Y
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
doub
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
doub
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
doub
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
Y
328
N
doub
Y
329
N
sing
Y
330
N
sing
N
331
N
sing
Y
332
N
doub
Y
333
N
sing
Y
334
N
sing
N
335
N
sing
Y
336
N
sing
Y
337
N
doub
N
338
N
sing
Y
339
N
doub
N
340
N
sing
Y
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
Y
356
N
doub
Y
357
N
sing
Y
358
N
sing
N
359
N
sing
Y
360
N
doub
N
361
N
sing
Y
362
N
doub
N
363
N
sing
Y
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
doub
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
US
Biochem.Biophys.Res.Commun.
BBRCA9
0146
0006-291X
329
1076
10.1016/J.BBRC.2005.02.078
15752764
Crystal Structure of Recombinant Human Growth Differentiation Factor 5. Evidence for Interaction of the Type I and Type II Receptor Binding Sites.
2005
10.2210/pdb2bhk/pdb
pdb_00002bhk
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
293.0
1
MIRRORS
IMAGE PLATE
1997-08-26
MAR scanner 345 mm plate
OSMIC MIRRORS
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
ENRAF-NONIUS FR571
INTERCHAIN DISULFIDE LINK BETWEEN TWO CRYSTALLOGRAPHICALLY RELATED MONOMERS
13598.638
GROWTH DIFFERENTIATION FACTOR 5
1
man
polymer
60.095
ISOPROPYL ALCOHOL
5
syn
non-polymer
18.015
water
72
nat
water
GDF-5, CARTILAGE-DERIVED MORPHOGENETIC PROTEIN 1, CDMP-1
no
no
APLATRQGKRPSKNLKARCSRKALHVNFKDMGWDDWIIAPLEYEAFHCEGLCEFPLRSHLEPTNHAVIQTLMNSMDPEST
PPTCCVPTRLSPISILFIDSANNVVYKQYEDMVVESCGCR
APLATRQGKRPSKNLKARCSRKALHVNFKDMGWDDWIIAPLEYEAFHCEGLCEFPLRSHLEPTNHAVIQTLMNSMDPEST
PPTCCVPTRLSPISILFIDSANNVVYKQYEDMVVESCGCR
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HUMAN
sample
9606
HOMO SAPIENS
562
ESCHERICHIA COLI
PUC18
1
5.1
75
VAPOR DIFFUSION, HANGING DROP
5.00
100 MM SODIUM ACETATE, PH 5.0 30% ISOPROPANOL 14 MG/ML PROTEIN HANGING DROP
diffrn_source
database_PDB_rev
database_PDB_rev_record
exptl_crystal_grow
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Data collection
Experimental preparation
Data collection
Database references
Derived calculations
Other
Refinement description
1
0
2005-03-11
1
1
2011-05-08
1
2
2011-07-13
1
3
2017-06-28
1
4
2019-05-08
1
5
2023-12-13
_diffrn_source.type
_exptl_crystal_grow.method
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
CRYSTAL STRUCTURE OF HUMAN GROWTH AND DIFFERENTIATION FACTOR 5 (GDF-5)
PDBE
Y
PDBE
2005-01-12
REL
REL
1
A
O
HOH
2015
7.20
IPA
ISOPROPYL ALCOHOL
HOH
water
FUNCTION: POSSIBLE INVOLVEMENT IN BONE FORMATION
1BMP
PDB ENTRY 1BMP
PDB
experimental model
IPA
200
2
IPA
IPA
200
A
IPA
201
2
IPA
IPA
201
A
IPA
202
2
IPA
IPA
202
A
IPA
203
2
IPA
IPA
203
A
IPA
204
2
IPA
IPA
204
A
HOH
2001
3
HOH
HOH
2001
A
HOH
2002
3
HOH
HOH
2002
A
HOH
2003
3
HOH
HOH
2003
A
HOH
2004
3
HOH
HOH
2004
A
HOH
2005
3
HOH
HOH
2005
A
HOH
2006
3
HOH
HOH
2006
A
HOH
2007
3
HOH
HOH
2007
A
HOH
2008
3
HOH
HOH
2008
A
HOH
2009
3
HOH
HOH
2009
A
HOH
2010
3
HOH
HOH
2010
A
HOH
2011
3
HOH
HOH
2011
A
HOH
2012
3
HOH
HOH
2012
A
HOH
2013
3
HOH
HOH
2013
A
HOH
2014
3
HOH
HOH
2014
A
HOH
2015
3
HOH
HOH
2015
A
HOH
2016
3
HOH
HOH
2016
A
HOH
2017
3
HOH
HOH
2017
A
HOH
2018
3
HOH
HOH
2018
A
HOH
2019
3
HOH
HOH
2019
A
HOH
2020
3
HOH
HOH
2020
A
HOH
2021
3
HOH
HOH
2021
A
HOH
2022
3
HOH
HOH
2022
A
HOH
2023
3
HOH
HOH
2023
A
HOH
2024
3
HOH
HOH
2024
A
HOH
2025
3
HOH
HOH
2025
A
HOH
2026
3
HOH
HOH
2026
A
HOH
2027
3
HOH
HOH
2027
A
HOH
2028
3
HOH
HOH
2028
A
HOH
2029
3
HOH
HOH
2029
A
HOH
2030
3
HOH
HOH
2030
A
HOH
2031
3
HOH
HOH
2031
A
HOH
2032
3
HOH
HOH
2032
A
HOH
2033
3
HOH
HOH
2033
A
HOH
2034
3
HOH
HOH
2034
A
HOH
2035
3
HOH
HOH
2035
A
HOH
2036
3
HOH
HOH
2036
A
HOH
2037
3
HOH
HOH
2037
A
HOH
2038
3
HOH
HOH
2038
A
HOH
2039
3
HOH
HOH
2039
A
HOH
2040
3
HOH
HOH
2040
A
HOH
2041
3
HOH
HOH
2041
A
HOH
2042
3
HOH
HOH
2042
A
HOH
2043
3
HOH
HOH
2043
A
HOH
2044
3
HOH
HOH
2044
A
HOH
2045
3
HOH
HOH
2045
A
HOH
2046
3
HOH
HOH
2046
A
HOH
2047
3
HOH
HOH
2047
A
HOH
2048
3
HOH
HOH
2048
A
HOH
2049
3
HOH
HOH
2049
A
HOH
2050
3
HOH
HOH
2050
A
HOH
2051
3
HOH
HOH
2051
A
HOH
2052
3
HOH
HOH
2052
A
HOH
2053
3
HOH
HOH
2053
A
HOH
2054
3
HOH
HOH
2054
A
HOH
2055
3
HOH
HOH
2055
A
HOH
2056
3
HOH
HOH
2056
A
HOH
2057
3
HOH
HOH
2057
A
HOH
2058
3
HOH
HOH
2058
A
HOH
2059
3
HOH
HOH
2059
A
HOH
2060
3
HOH
HOH
2060
A
HOH
2061
3
HOH
HOH
2061
A
HOH
2062
3
HOH
HOH
2062
A
HOH
2063
3
HOH
HOH
2063
A
HOH
2064
3
HOH
HOH
2064
A
HOH
2065
3
HOH
HOH
2065
A
HOH
2066
3
HOH
HOH
2066
A
HOH
2067
3
HOH
HOH
2067
A
HOH
2068
3
HOH
HOH
2068
A
HOH
2069
3
HOH
HOH
2069
A
HOH
2070
3
HOH
HOH
2070
A
HOH
2071
3
HOH
HOH
2071
A
HOH
2072
3
HOH
HOH
2072
A
n
1
0
A
n
2
1
A
n
3
2
A
n
4
3
A
n
5
4
A
n
6
5
A
n
7
6
A
n
8
7
A
n
9
8
A
n
10
9
A
n
11
10
A
n
12
11
A
n
13
12
A
n
14
13
A
n
15
14
A
LYS
15
n
16
LYS
15
A
ALA
16
n
17
ALA
16
A
ARG
17
n
18
ARG
17
A
CYS
18
n
19
CYS
18
A
SER
19
n
20
SER
19
A
ARG
20
n
21
ARG
20
A
LYS
21
n
22
LYS
21
A
ALA
22
n
23
ALA
22
A
LEU
23
n
24
LEU
23
A
HIS
24
n
25
HIS
24
A
VAL
25
n
26
VAL
25
A
ASN
26
n
27
ASN
26
A
PHE
27
n
28
PHE
27
A
LYS
28
n
29
LYS
28
A
ASP
29
n
30
ASP
29
A
MET
30
n
31
MET
30
A
GLY
31
n
32
GLY
31
A
TRP
32
n
33
TRP
32
A
ASP
33
n
34
ASP
33
A
ASP
34
n
35
ASP
34
A
TRP
35
n
36
TRP
35
A
ILE
36
n
37
ILE
36
A
ILE
37
n
38
ILE
37
A
ALA
38
n
39
ALA
38
A
PRO
39
n
40
PRO
39
A
LEU
40
n
41
LEU
40
A
GLU
41
n
42
GLU
41
A
TYR
42
n
43
TYR
42
A
GLU
43
n
44
GLU
43
A
ALA
44
n
45
ALA
44
A
PHE
45
n
46
PHE
45
A
HIS
46
n
47
HIS
46
A
CYS
47
n
48
CYS
47
A
GLU
48
n
49
GLU
48
A
GLY
49
n
50
GLY
49
A
LEU
50
n
51
LEU
50
A
CYS
51
n
52
CYS
51
A
GLU
52
n
53
GLU
52
A
PHE
53
n
54
PHE
53
A
PRO
54
n
55
PRO
54
A
LEU
55
n
56
LEU
55
A
ARG
56
n
57
ARG
56
A
SER
57
n
58
SER
57
A
HIS
58
n
59
HIS
58
A
LEU
59
n
60
LEU
59
A
GLU
60
n
61
GLU
60
A
PRO
61
n
62
PRO
61
A
THR
62
n
63
THR
62
A
ASN
63
n
64
ASN
63
A
HIS
64
n
65
HIS
64
A
ALA
65
n
66
ALA
65
A
VAL
66
n
67
VAL
66
A
ILE
67
n
68
ILE
67
A
GLN
68
n
69
GLN
68
A
THR
69
n
70
THR
69
A
LEU
70
n
71
LEU
70
A
MET
71
n
72
MET
71
A
ASN
72
n
73
ASN
72
A
SER
73
n
74
SER
73
A
MET
74
n
75
MET
74
A
ASP
75
n
76
ASP
75
A
PRO
76
n
77
PRO
76
A
GLU
77
n
78
GLU
77
A
SER
78
n
79
SER
78
A
THR
79
n
80
THR
79
A
PRO
80
n
81
PRO
80
A
PRO
81
n
82
PRO
81
A
THR
82
n
83
THR
82
A
CYS
83
n
84
CYS
83
A
CYS
84
n
85
CYS
84
A
VAL
85
n
86
VAL
85
A
PRO
86
n
87
PRO
86
A
THR
87
n
88
THR
87
A
ARG
88
n
89
ARG
88
A
LEU
89
n
90
LEU
89
A
SER
90
n
91
SER
90
A
PRO
91
n
92
PRO
91
A
ILE
92
n
93
ILE
92
A
SER
93
n
94
SER
93
A
ILE
94
n
95
ILE
94
A
LEU
95
n
96
LEU
95
A
PHE
96
n
97
PHE
96
A
ILE
97
n
98
ILE
97
A
ASP
98
n
99
ASP
98
A
SER
99
n
100
SER
99
A
ALA
100
n
101
ALA
100
A
ASN
101
n
102
ASN
101
A
ASN
102
n
103
ASN
102
A
VAL
103
n
104
VAL
103
A
VAL
104
n
105
VAL
104
A
TYR
105
n
106
TYR
105
A
LYS
106
n
107
LYS
106
A
GLN
107
n
108
GLN
107
A
TYR
108
n
109
TYR
108
A
GLU
109
n
110
GLU
109
A
ASP
110
n
111
ASP
110
A
MET
111
n
112
MET
111
A
VAL
112
n
113
VAL
112
A
VAL
113
n
114
VAL
113
A
GLU
114
n
115
GLU
114
A
SER
115
n
116
SER
115
A
CYS
116
n
117
CYS
116
A
GLY
117
n
118
GLY
117
A
CYS
118
n
119
CYS
118
A
ARG
119
n
120
ARG
119
A
author_and_software_defined_assembly
PQS
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_555
y,x,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
N
LYS
21
A
N
LYS
22
A
O
HIS
46
A
O
HIS
47
A
N
VAL
25
A
N
VAL
26
A
O
TYR
42
A
O
TYR
43
A
N
ILE
37
A
N
ILE
38
A
O
LEU
95
A
O
LEU
96
A
N
PHE
96
A
N
PHE
97
A
O
VAL
104
A
O
VAL
105
1
A
ALA
0
A
ALA
1
1
Y
1
A
PRO
1
A
PRO
2
1
Y
1
A
LEU
2
A
LEU
3
1
Y
1
A
ALA
3
A
ALA
4
1
Y
1
A
THR
4
A
THR
5
1
Y
1
A
ARG
5
A
ARG
6
1
Y
1
A
GLN
6
A
GLN
7
1
Y
1
A
GLY
7
A
GLY
8
1
Y
1
A
LYS
8
A
LYS
9
1
Y
1
A
ARG
9
A
ARG
10
1
Y
1
A
PRO
10
A
PRO
11
1
Y
1
A
SER
11
A
SER
12
1
Y
1
A
LYS
12
A
LYS
13
1
Y
1
A
ASN
13
A
ASN
14
1
Y
1
A
LEU
14
A
LEU
15
1
Y
1
A
CYS
18
-35.32
126.91
1
A
PHE
45
62.12
167.45
1
A
GLU
60
32.55
65.60
1
A
ASP
75
-158.04
85.00
1
A
ASP
98
-78.30
-169.03
1
A
ASN
101
81.34
16.99
35.6
0.220
0.168
0.168
2.4
8.0
939
9058
10.4
96.0
RANDOM
1000000000
0.1
1
THROUGHOUT
MOLECULAR REPLACEMENT
PDB ENTRY 1BMP
2.4
8.0
72
926
20
0
834
0.011
1.5
25.4
1.5
0.310
0.267
2.51
8
9.7
98.7
9.2
2.400
60.000
2BHK
9310
0.07000
1
17.0000
3.700
95.7
0.28000
2.40
2.50
4.800
1
3.60
98.6
refinement
X-PLOR
3.1
data reduction
XDS
data scaling
XSCALE
Crystal structure of human growth and differentiation factor 5 (GDF5)
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
A
LYS
28
A
LYS
29
HELX_P
A
MET
30
A
MET
31
5
1
3
A
ARG
56
A
ARG
57
HELX_P
A
GLU
60
A
GLU
61
5
2
5
A
THR
62
A
THR
63
HELX_P
A
ASP
75
A
ASP
76
1
3
14
disulf
2.000
A
CYS
18
A
SG
CYS
19
1_555
A
CYS
84
A
SG
CYS
85
1_555
disulf
1.999
A
CYS
47
A
SG
CYS
48
1_555
A
CYS
116
A
SG
CYS
117
1_555
disulf
2.020
A
CYS
51
A
SG
CYS
52
1_555
A
CYS
118
A
SG
CYS
119
1_555
disulf
2.058
A
CYS
83
A
SG
CYS
84
1_555
A
CYS
83
A
SG
CYS
84
4_555
GROWTH FACTOR
GROWTH FACTOR, GROWTH DIFFERENTIATION FACTOR, BONE MORPHOGENETIC FACTOR, HORMONE-RECEPTOR INTERACTION, CYSTINE KNOT, PREFORMED RECEPTOR DIMER, CYTOKINE, DWARFISM, GLYCOPROTEIN
A
ALA
38
A
ALA
39
1
A
PRO
39
A
PRO
40
-0.50
A
PHE
53
A
PHE
54
1
A
PRO
54
A
PRO
55
-0.47
GDF5_HUMAN
UNP
1
P43026
382
501
2BHK
0
119
P43026
A
1
1
120
2
2
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
SER
19
A
SER
20
A
LYS
21
A
LYS
22
A
HIS
46
A
HIS
47
A
GLU
48
A
GLU
49
A
HIS
24
A
HIS
25
A
ASN
26
A
ASN
27
A
GLU
41
A
GLU
42
A
GLU
43
A
GLU
44
A
ILE
36
A
ILE
37
A
ALA
38
A
ALA
39
A
CYS
84
A
CYS
85
A
ILE
97
A
ILE
98
A
VAL
103
A
VAL
104
A
CYS
118
A
CYS
119
BINDING SITE FOR RESIDUE IPA A 200
A
IPA
200
Software
2
BINDING SITE FOR RESIDUE IPA A 201
A
IPA
201
Software
1
BINDING SITE FOR RESIDUE IPA A 202
A
IPA
202
Software
2
BINDING SITE FOR RESIDUE IPA A 203
A
IPA
203
Software
4
BINDING SITE FOR RESIDUE IPA A 204
A
IPA
204
Software
2
A
PHE
96
A
PHE
97
2
1_555
A
TYR
108
A
TYR
109
2
1_555
A
ASN
63
A
ASN
64
1
1_555
A
PRO
86
A
PRO
87
2
1_555
A
ARG
119
A
ARG
120
2
1_555
A
ASP
29
A
ASP
30
4
1_555
A
SER
93
A
SER
94
4
1_555
A
TYR
105
A
TYR
106
4
1_555
A
IPA
204
F
IPA
4
1_555
A
IPA
203
E
IPA
2
1_555
A
HOH
2072
G
HOH
2
1_555
154
P 32 2 1