0.016219
0.000000
0.000000
0.000000
0.016219
0.000000
0.000000
0.000000
0.008619
0.00000
0.00000
0.00000
Kim, M.H.
Cooper, D.R.
Derewenda, U.
Derewenda, Z.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
61.655
61.655
116.020
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
O
N
138
N
H
N
139
N
H
N
140
N
N
N
141
S
C
N
142
N
C
N
143
N
O
N
144
S
C
N
145
N
C
N
146
N
C
N
147
N
C
N
148
N
O
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
N
N
163
S
C
N
164
N
C
N
165
N
O
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
O
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
N
N
185
S
C
N
186
N
C
N
187
N
O
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
N
N
193
N
O
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
N
N
210
S
C
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
S
N
216
N
C
N
217
N
O
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
N
N
230
S
C
N
231
N
C
N
232
N
O
N
233
N
C
Y
234
N
C
Y
235
N
C
Y
236
N
C
Y
237
N
C
Y
238
N
C
Y
239
N
C
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
N
N
253
S
C
N
254
N
C
N
255
N
O
N
256
N
C
N
257
N
C
N
258
N
C
N
259
N
O
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
N
N
270
S
C
N
271
N
C
N
272
N
O
N
273
N
C
N
274
N
O
N
275
N
O
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
N
N
284
S
C
N
285
N
C
N
286
N
O
N
287
R
C
N
288
N
O
N
289
N
C
N
290
N
O
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
N
N
301
S
C
N
302
N
C
N
303
N
O
N
304
N
C
Y
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
N
Y
309
N
C
Y
310
N
C
Y
311
N
C
Y
312
N
C
Y
313
N
C
N
314
N
O
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
N
N
328
S
C
N
329
N
C
N
330
N
O
N
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
Y
336
N
C
Y
337
N
C
N
338
N
O
N
339
N
O
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
N
N
352
S
C
N
353
N
C
N
354
N
O
N
355
N
C
N
356
N
C
N
357
N
C
N
358
N
O
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
doub
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
Y
227
N
doub
Y
228
N
sing
Y
229
N
sing
N
230
N
sing
Y
231
N
doub
N
232
N
sing
Y
233
N
doub
N
234
N
sing
Y
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
doub
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
doub
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
Y
296
N
doub
Y
297
N
sing
Y
298
N
sing
N
299
N
sing
Y
300
N
doub
Y
301
N
sing
Y
302
N
sing
N
303
N
sing
Y
304
N
sing
Y
305
N
doub
N
306
N
sing
Y
307
N
doub
N
308
N
sing
Y
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
doub
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
Y
324
N
doub
Y
325
N
sing
Y
326
N
sing
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
doub
N
331
N
sing
Y
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
doub
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
US
Proteins
PSFGEY
0867
0887-3585
64
874
10.1002/PROT.21068
16835924
The Dc-Module of Doublecortin: Dynamics, Domain Boundaries, and Functional Implications.
2006
10.2210/pdb2bqq/pdb
pdb_00002bqq
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
CCD
2003-04-16
ADSC CCD
SINGLE WAVELENGTH
M
x-ray
1
0.97930
1.0
X9B
NSLS
0.97930
SYNCHROTRON
NSLS BEAMLINE X9B
12944.309
NEURONAL MIGRATION PROTEIN DOUBLECORTIN
N-TERMINAL DOMAIN RESIDUES 45-150
YES
1
man
polymer
18.015
water
101
nat
water
DOUBLECORTIN, LISSENCEPHALIN-X, LIS-X, DOUBLIN
no
no
GAMDPEFALSNEKKAKKVRFYRNGDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMD
ELEEGESYVCSSDNFFDDVEYTKNVNPNWSVNV
GAMDPEFALSNEKKAKKVRFYRNGDRYFKGIVYAVSSDRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMD
ELEEGESYVCSSDNFFDDVEYTKNVNPNWSVNV
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HUMAN
sample
9606
HOMO SAPIENS
469008
ESCHERICHIA COLI
BL21(DE3)
PGSTUNI1
1
2.1
41.9
VAPOR DIFFUSION, SITTING DROP
4.40
1.4 M NAH2PO4, 0.35 M K2HPO4, 0.6% PEG 150, SITTING DROP, pH 4.40
exptl_crystal_grow
pdbx_database_proc
pdbx_database_status
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
repository
Initial release
Advisory
Version format compliance
Data collection
Database references
Derived calculations
Structure summary
Structure summary
Data collection
Experimental preparation
Other
Data collection
Database references
Other
Refinement description
1
0
2006-07-19
1
1
2011-07-13
1
2
2013-10-02
1
3
2015-04-01
1
4
2019-05-08
1
5
2023-12-13
_exptl_crystal_grow.method
_pdbx_database_status.recvd_author_approval
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
STRUCTURE OF N-TERMINAL DOMAIN OF HUMAN DOUBLECORTIN
PDBE
Y
PDBE
2005-04-27
REL
REL
1
A
O
HOH
2062
6.45
HOH
water
ENGINEERED RESIDUE IN CHAIN A, LYS 134 TO ASP
ENGINEERED RESIDUE IN CHAIN A, LYS 135 TO ASP
K134D, K135D MUTATIONS WERE TO AID CRYSTALLIZATION,
INITIAL GAMDPEFA ARE CLONING ARTIFACT
1MG4
PDB ENTRY 1MG4
PDB
experimental model
HOH
2001
2
HOH
HOH
2001
A
HOH
2002
2
HOH
HOH
2002
A
HOH
2003
2
HOH
HOH
2003
A
HOH
2004
2
HOH
HOH
2004
A
HOH
2005
2
HOH
HOH
2005
A
HOH
2006
2
HOH
HOH
2006
A
HOH
2007
2
HOH
HOH
2007
A
HOH
2008
2
HOH
HOH
2008
A
HOH
2009
2
HOH
HOH
2009
A
HOH
2010
2
HOH
HOH
2010
A
HOH
2011
2
HOH
HOH
2011
A
HOH
2012
2
HOH
HOH
2012
A
HOH
2013
2
HOH
HOH
2013
A
HOH
2014
2
HOH
HOH
2014
A
HOH
2015
2
HOH
HOH
2015
A
HOH
2016
2
HOH
HOH
2016
A
HOH
2017
2
HOH
HOH
2017
A
HOH
2018
2
HOH
HOH
2018
A
HOH
2019
2
HOH
HOH
2019
A
HOH
2020
2
HOH
HOH
2020
A
HOH
2021
2
HOH
HOH
2021
A
HOH
2022
2
HOH
HOH
2022
A
HOH
2023
2
HOH
HOH
2023
A
HOH
2024
2
HOH
HOH
2024
A
HOH
2025
2
HOH
HOH
2025
A
HOH
2026
2
HOH
HOH
2026
A
HOH
2027
2
HOH
HOH
2027
A
HOH
2028
2
HOH
HOH
2028
A
HOH
2029
2
HOH
HOH
2029
A
HOH
2030
2
HOH
HOH
2030
A
HOH
2031
2
HOH
HOH
2031
A
HOH
2032
2
HOH
HOH
2032
A
HOH
2033
2
HOH
HOH
2033
A
HOH
2034
2
HOH
HOH
2034
A
HOH
2035
2
HOH
HOH
2035
A
HOH
2036
2
HOH
HOH
2036
A
HOH
2037
2
HOH
HOH
2037
A
HOH
2038
2
HOH
HOH
2038
A
HOH
2039
2
HOH
HOH
2039
A
HOH
2040
2
HOH
HOH
2040
A
HOH
2041
2
HOH
HOH
2041
A
HOH
2042
2
HOH
HOH
2042
A
HOH
2043
2
HOH
HOH
2043
A
HOH
2044
2
HOH
HOH
2044
A
HOH
2045
2
HOH
HOH
2045
A
HOH
2046
2
HOH
HOH
2046
A
HOH
2047
2
HOH
HOH
2047
A
HOH
2048
2
HOH
HOH
2048
A
HOH
2049
2
HOH
HOH
2049
A
HOH
2050
2
HOH
HOH
2050
A
HOH
2051
2
HOH
HOH
2051
A
HOH
2052
2
HOH
HOH
2052
A
HOH
2053
2
HOH
HOH
2053
A
HOH
2054
2
HOH
HOH
2054
A
HOH
2055
2
HOH
HOH
2055
A
HOH
2056
2
HOH
HOH
2056
A
HOH
2057
2
HOH
HOH
2057
A
HOH
2058
2
HOH
HOH
2058
A
HOH
2059
2
HOH
HOH
2059
A
HOH
2060
2
HOH
HOH
2060
A
HOH
2061
2
HOH
HOH
2061
A
HOH
2062
2
HOH
HOH
2062
A
HOH
2063
2
HOH
HOH
2063
A
HOH
2064
2
HOH
HOH
2064
A
HOH
2065
2
HOH
HOH
2065
A
HOH
2066
2
HOH
HOH
2066
A
HOH
2067
2
HOH
HOH
2067
A
HOH
2068
2
HOH
HOH
2068
A
HOH
2069
2
HOH
HOH
2069
A
HOH
2070
2
HOH
HOH
2070
A
HOH
2071
2
HOH
HOH
2071
A
HOH
2072
2
HOH
HOH
2072
A
HOH
2073
2
HOH
HOH
2073
A
HOH
2074
2
HOH
HOH
2074
A
HOH
2075
2
HOH
HOH
2075
A
HOH
2076
2
HOH
HOH
2076
A
HOH
2077
2
HOH
HOH
2077
A
HOH
2078
2
HOH
HOH
2078
A
HOH
2079
2
HOH
HOH
2079
A
HOH
2080
2
HOH
HOH
2080
A
HOH
2081
2
HOH
HOH
2081
A
HOH
2082
2
HOH
HOH
2082
A
HOH
2083
2
HOH
HOH
2083
A
HOH
2084
2
HOH
HOH
2084
A
HOH
2085
2
HOH
HOH
2085
A
HOH
2086
2
HOH
HOH
2086
A
HOH
2087
2
HOH
HOH
2087
A
HOH
2088
2
HOH
HOH
2088
A
HOH
2089
2
HOH
HOH
2089
A
HOH
2090
2
HOH
HOH
2090
A
HOH
2091
2
HOH
HOH
2091
A
HOH
2092
2
HOH
HOH
2092
A
HOH
2093
2
HOH
HOH
2093
A
HOH
2094
2
HOH
HOH
2094
A
HOH
2095
2
HOH
HOH
2095
A
HOH
2096
2
HOH
HOH
2096
A
HOH
2097
2
HOH
HOH
2097
A
HOH
2098
2
HOH
HOH
2098
A
HOH
2099
2
HOH
HOH
2099
A
HOH
2100
2
HOH
HOH
2100
A
HOH
2101
2
HOH
HOH
2101
A
n
1
38
A
n
2
39
A
n
3
40
A
n
4
41
A
n
5
42
A
n
6
43
A
n
7
44
A
n
8
45
A
n
9
46
A
n
10
47
A
n
11
48
A
n
12
49
A
n
13
50
A
n
14
51
A
ALA
52
n
15
ALA
52
A
LYS
53
n
16
LYS
53
A
LYS
54
n
17
LYS
54
A
VAL
55
n
18
VAL
55
A
ARG
56
n
19
ARG
56
A
PHE
57
n
20
PHE
57
A
TYR
58
n
21
TYR
58
A
ARG
59
n
22
ARG
59
A
ASN
60
n
23
ASN
60
A
GLY
61
n
24
GLY
61
A
ASP
62
n
25
ASP
62
A
ARG
63
n
26
ARG
63
A
TYR
64
n
27
TYR
64
A
PHE
65
n
28
PHE
65
A
LYS
66
n
29
LYS
66
A
GLY
67
n
30
GLY
67
A
ILE
68
n
31
ILE
68
A
VAL
69
n
32
VAL
69
A
TYR
70
n
33
TYR
70
A
ALA
71
n
34
ALA
71
A
VAL
72
n
35
VAL
72
A
SER
73
n
36
SER
73
A
SER
74
n
37
SER
74
A
ASP
75
n
38
ASP
75
A
ARG
76
n
39
ARG
76
A
PHE
77
n
40
PHE
77
A
ARG
78
n
41
ARG
78
A
SER
79
n
42
SER
79
A
PHE
80
n
43
PHE
80
A
ASP
81
n
44
ASP
81
A
ALA
82
n
45
ALA
82
A
LEU
83
n
46
LEU
83
A
LEU
84
n
47
LEU
84
A
ALA
85
n
48
ALA
85
A
ASP
86
n
49
ASP
86
A
LEU
87
n
50
LEU
87
A
THR
88
n
51
THR
88
A
ARG
89
n
52
ARG
89
A
SER
90
n
53
SER
90
A
LEU
91
n
54
LEU
91
A
SER
92
n
55
SER
92
A
ASP
93
n
56
ASP
93
A
ASN
94
n
57
ASN
94
A
ILE
95
n
58
ILE
95
A
ASN
96
n
59
ASN
96
A
LEU
97
n
60
LEU
97
A
PRO
98
n
61
PRO
98
A
GLN
99
n
62
GLN
99
A
GLY
100
n
63
GLY
100
A
VAL
101
n
64
VAL
101
A
ARG
102
n
65
ARG
102
A
TYR
103
n
66
TYR
103
A
ILE
104
n
67
ILE
104
A
TYR
105
n
68
TYR
105
A
THR
106
n
69
THR
106
A
ILE
107
n
70
ILE
107
A
ASP
108
n
71
ASP
108
A
GLY
109
n
72
GLY
109
A
SER
110
n
73
SER
110
A
ARG
111
n
74
ARG
111
A
LYS
112
n
75
LYS
112
A
ILE
113
n
76
ILE
113
A
GLY
114
n
77
GLY
114
A
SER
115
n
78
SER
115
A
MET
116
n
79
MET
116
A
ASP
117
n
80
ASP
117
A
GLU
118
n
81
GLU
118
A
LEU
119
n
82
LEU
119
A
GLU
120
n
83
GLU
120
A
GLU
121
n
84
GLU
121
A
GLY
122
n
85
GLY
122
A
GLU
123
n
86
GLU
123
A
SER
124
n
87
SER
124
A
TYR
125
n
88
TYR
125
A
VAL
126
n
89
VAL
126
A
CYS
127
n
90
CYS
127
A
SER
128
n
91
SER
128
A
SER
129
n
92
SER
129
A
ASP
130
n
93
ASP
130
A
ASN
131
n
94
ASN
131
A
PHE
132
n
95
PHE
132
A
PHE
133
n
96
PHE
133
A
ASP
134
n
97
ASP
134
A
ASP
135
n
98
ASP
135
A
VAL
136
n
99
VAL
136
A
GLU
137
n
100
GLU
137
A
TYR
138
n
101
TYR
138
A
THR
139
n
102
THR
139
A
LYS
140
n
103
LYS
140
A
ASN
141
n
104
ASN
141
A
VAL
142
n
105
VAL
142
A
ASN
143
n
106
ASN
143
A
PRO
144
n
107
PRO
144
A
ASN
145
n
108
ASN
145
A
TRP
146
n
109
TRP
146
A
SER
147
n
110
SER
147
A
n
111
148
A
n
112
149
A
n
113
150
A
3.5966
-0.3224
-0.6415
3.8869
0.3138
3.3573
0.1299
0.1174
0.1306
-0.0173
-0.1787
0.2593
-0.1850
-0.6208
0.0488
-0.2674
0.0324
-0.0196
-0.1349
-0.0077
-0.1855
refined
11.9870
36.3210
44.0750
X-RAY DIFFRACTION
A
52
A
147
X-RAY DIFFRACTION
1
author_and_software_defined_assembly
PISA
2
dimeric
1830
-6.3
10470
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
6_566
x,-y+1,-z+1
crystal symmetry operation
0.0000000000
61.6550000000
116.0200000000
A
N
VAL
72
A
N
VAL
35
A
O
LYS
53
A
O
LYS
16
A
N
TYR
58
A
N
TYR
21
A
O
TYR
125
A
O
TYR
88
A
N
SER
128
A
N
SER
91
A
O
TYR
103
A
O
TYR
66
1
A
CE
LYS
54
A
CE
LYS
17
1
Y
1
A
NZ
LYS
54
A
NZ
LYS
17
1
Y
1
A
GLY
38
A
GLY
1
1
Y
1
A
ALA
39
A
ALA
2
1
Y
1
A
MET
40
A
MET
3
1
Y
1
A
ASP
41
A
ASP
4
1
Y
1
A
PRO
42
A
PRO
5
1
Y
1
A
GLU
43
A
GLU
6
1
Y
1
A
PHE
44
A
PHE
7
1
Y
1
A
ALA
45
A
ALA
8
1
Y
1
A
LEU
46
A
LEU
9
1
Y
1
A
SER
47
A
SER
10
1
Y
1
A
ASN
48
A
ASN
11
1
Y
1
A
GLU
49
A
GLU
12
1
Y
1
A
LYS
50
A
LYS
13
1
Y
1
A
LYS
51
A
LYS
14
1
Y
1
A
VAL
148
A
VAL
111
1
Y
1
A
ASN
149
A
ASN
112
1
Y
1
A
VAL
150
A
VAL
113
1
Y
1
A
A
O
O
HOH
HOH
2036
2052
2.07
1
3.99
0.50
120.30
124.29
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
56
56
56
N
1
5.87
0.90
118.30
124.17
A
A
A
CB
CG
OD2
ASP
ASP
ASP
81
81
81
N
1
-4.19
0.50
120.30
116.11
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
89
89
89
N
1
-9.69
0.90
118.30
108.61
A
A
A
CB
CG
OD1
ASP
ASP
ASP
130
130
130
N
1
9.73
0.90
118.30
128.03
A
A
A
CB
CG
OD2
ASP
ASP
ASP
130
130
130
N
1
A
LEU
97
69.04
72.53
1
A
ASN
131
-81.98
44.15
46.52
-0.24700
0.00000
0.00000
-0.24700
0.00000
0.49500
0.959
0.926
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.
0.237
0.173
0.179
2.20
40.00
581
5996
9.700
99.9
9.956
0.137
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.269
0.218
0.80
1.20
PDB ENTRY 1MG4
MAXIMUM LIKELIHOOD
MASK BULK SOLVENT
2.20
40.00
101
882
0
0
781
0.011
0.022
797
2.525
1.942
1075
5.438
5.000
95
34.403
23.333
45
12.575
15.000
132
16.199
15.000
8
0.121
0.200
111
0.004
0.020
628
0.187
0.200
328
0.302
0.200
543
0.182
0.200
71
0.214
0.200
68
0.248
0.200
24
0.616
1.500
486
1.118
2.000
764
1.889
3.000
357
2.968
4.500
311
0.3040
0.2380
40.00
9
85
20
36.90
2.200
30.000
2BQQ
6002
0.000
0.07000
1
28.3000
8.800
100.0
0.48000
2.00
2.28
4.600
1
8.80
100.0
refinement
REFMAC
5.2.0005
data reduction
HKL-2000
data scaling
HKL-2000
phasing
AMoRE
X-ray Structure of the N-terminal Domain of Human Doublecortin
1
N
N
2
N
N
A
SER
79
A
SER
42
HELX_P
A
SER
92
A
SER
55
1
1
14
A
SER
115
A
SER
78
HELX_P
A
LEU
119
A
LEU
82
5
2
5
TRANSFERASE
DCX DOMAIN, UBIQUITIN-LIKE FOLD, MICROTUBULE ASSOCIATED, SIGNALING PROTEIN, TRANSFERASE
2BQQ
PDB
1
2BQQ
DCX_HUMAN
UNP
1
O43602
38
44
2BQQ
38
44
2BQQ
A
1
1
7
45
150
2BQQ
45
150
O43602
A
2
8
113
1
LYS
engineered mutation
ASP
134
2BQQ
A
O43602
UNP
134
97
1
LYS
engineered mutation
ASP
135
2BQQ
A
O43602
UNP
135
98
4
anti-parallel
parallel
anti-parallel
A
ILE
68
A
ILE
31
A
VAL
72
A
VAL
35
A
LYS
53
A
LYS
16
A
ARG
59
A
ARG
22
A
SER
124
A
SER
87
A
SER
128
A
SER
91
A
TYR
103
A
TYR
66
A
THR
106
A
THR
69
97
I 4 2 2