0.008347
0.004819
0.000000
0.000000
0.009639
0.000000
0.000000
0.000000
0.016051
0.00000
0.00000
0.00000
Chen, P.R.
Bae, T.
Williams, W.A.
Duguid, E.M.
Rice, P.A.
Schneewind, O.
He, C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
119.800
119.800
62.300
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Nat.Chem.Biol.
1552-4450
2
591
10.1038/NCHEMBIO820
16980961
An Oxidation-Sensing Mechanism is Used by the Global Regulator Mgra in Staphylococcus Aureus.
2006
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
77.0
1
BENT MIRROR
CCD
2005-04-03
SI 111
MAD
M
x-ray
1
1.5
1.0
14-ID-B
APS
1.5
SYNCHROTRON
APS BEAMLINE 14-ID-B
16533.510
HTH-TYPE TRANSCRIPTIONAL REGULATOR MGRA
RESIDUES 5-142
1
man
polymer
96.063
SULFATE ION
1
syn
non-polymer
18.015
water
9
nat
water
MGRA
no
yes
GSH(MSE)NLKEQLCFSLYNAQRQVNRYYSNKVFKKYNLTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKR
(MSE)EQVDLIKRERSEVDQREVFIHLTDKSETIRPELSNASDKVASASSLSQDEVKELNRLLGKVIHAFDE
GSHMNLKEQLCFSLYNAQRQVNRYYSNKVFKKYNLTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQVDL
IKRERSEVDQREVFIHLTDKSETIRPELSNASDKVASASSLSQDEVKELNRLLGKVIHAFDE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
NEWMAN
sample
1280
STAPHYLOCOCCUS AUREUS
469008
ESCHERICHIA COLI
BL21(DE3)
PET28A
PET28A
1
3.90
70
6.60
PROTEIN WAS CRYSTALLIZED FROM 1.6 M AMMONIUM SULFATE, 0.1M MES, PH 6.0, XTALS WERE RINSED IN CRYOPROTECTANT SOLUTIONS CONSISTING OF RESERVOIR BUFFER WITH AN ADDED 10%, 20% AND 25% GLYCEROL RESPECTIVELY. SELENOMETHIONINE (SEMET)-CONTAINING PROTEIN WAS CRYSTALLIZED UNDER THE SAME CONDITION.
repository
Initial release
Version format compliance
Version format compliance
1
0
2006-09-20
1
1
2011-05-08
1
2
2011-07-13
PDBE
Y
PDBE
2005-06-22
REL
SO4
SULFATE ION
HOH
water
RESIDUES 5-143 OF THE 147 RESIDUE PROTEIN
WITH N-TERMINAL GLY SER HIS CLONING ARTIFACTS.
SO4
1142
2
SO4
SO4
1142
A
HOH
2001
3
HOH
HOH
2001
A
HOH
2002
3
HOH
HOH
2002
A
HOH
2003
3
HOH
HOH
2003
A
HOH
2004
3
HOH
HOH
2004
A
HOH
2005
3
HOH
HOH
2005
A
HOH
2006
3
HOH
HOH
2006
A
HOH
2007
3
HOH
HOH
2007
A
HOH
2008
3
HOH
HOH
2008
A
HOH
2009
3
HOH
HOH
2009
A
n
1
2
A
n
2
3
A
n
3
4
A
MSE
5
n
4
MSE
5
A
ASN
6
n
5
ASN
6
A
LEU
7
n
6
LEU
7
A
LYS
8
n
7
LYS
8
A
GLU
9
n
8
GLU
9
A
GLN
10
n
9
GLN
10
A
LEU
11
n
10
LEU
11
A
CYS
12
n
11
CYS
12
A
PHE
13
n
12
PHE
13
A
SER
14
n
13
SER
14
A
LEU
15
n
14
LEU
15
A
TYR
16
n
15
TYR
16
A
ASN
17
n
16
ASN
17
A
ALA
18
n
17
ALA
18
A
GLN
19
n
18
GLN
19
A
ARG
20
n
19
ARG
20
A
GLN
21
n
20
GLN
21
A
VAL
22
n
21
VAL
22
A
ASN
23
n
22
ASN
23
A
ARG
24
n
23
ARG
24
A
TYR
25
n
24
TYR
25
A
TYR
26
n
25
TYR
26
A
SER
27
n
26
SER
27
A
ASN
28
n
27
ASN
28
A
LYS
29
n
28
LYS
29
A
VAL
30
n
29
VAL
30
A
PHE
31
n
30
PHE
31
A
LYS
32
n
31
LYS
32
A
LYS
33
n
32
LYS
33
A
TYR
34
n
33
TYR
34
A
ASN
35
n
34
ASN
35
A
LEU
36
n
35
LEU
36
A
THR
37
n
36
THR
37
A
TYR
38
n
37
TYR
38
A
PRO
39
n
38
PRO
39
A
GLN
40
n
39
GLN
40
A
PHE
41
n
40
PHE
41
A
LEU
42
n
41
LEU
42
A
VAL
43
n
42
VAL
43
A
LEU
44
n
43
LEU
44
A
THR
45
n
44
THR
45
A
ILE
46
n
45
ILE
46
A
LEU
47
n
46
LEU
47
A
TRP
48
n
47
TRP
48
A
ASP
49
n
48
ASP
49
A
GLU
50
n
49
GLU
50
A
SER
51
n
50
SER
51
A
PRO
52
n
51
PRO
52
A
VAL
53
n
52
VAL
53
A
ASN
54
n
53
ASN
54
A
VAL
55
n
54
VAL
55
A
LYS
56
n
55
LYS
56
A
LYS
57
n
56
LYS
57
A
VAL
58
n
57
VAL
58
A
VAL
59
n
58
VAL
59
A
THR
60
n
59
THR
60
A
GLU
61
n
60
GLU
61
A
LEU
62
n
61
LEU
62
A
ALA
63
n
62
ALA
63
A
LEU
64
n
63
LEU
64
A
ASP
65
n
64
ASP
65
A
THR
66
n
65
THR
66
A
GLY
67
n
66
GLY
67
A
THR
68
n
67
THR
68
A
VAL
69
n
68
VAL
69
A
SER
70
n
69
SER
70
A
PRO
71
n
70
PRO
71
A
LEU
72
n
71
LEU
72
A
LEU
73
n
72
LEU
73
A
LYS
74
n
73
LYS
74
A
ARG
75
n
74
ARG
75
A
MSE
76
n
75
MSE
76
A
GLU
77
n
76
GLU
77
A
GLN
78
n
77
GLN
78
A
VAL
79
n
78
VAL
79
A
ASP
80
n
79
ASP
80
A
LEU
81
n
80
LEU
81
A
ILE
82
n
81
ILE
82
A
LYS
83
n
82
LYS
83
A
ARG
84
n
83
ARG
84
A
GLU
85
n
84
GLU
85
A
ARG
86
n
85
ARG
86
A
SER
87
n
86
SER
87
A
GLU
88
n
87
GLU
88
A
VAL
89
n
88
VAL
89
A
ASP
90
n
89
ASP
90
A
GLN
91
n
90
GLN
91
A
ARG
92
n
91
ARG
92
A
GLU
93
n
92
GLU
93
A
VAL
94
n
93
VAL
94
A
PHE
95
n
94
PHE
95
A
ILE
96
n
95
ILE
96
A
HIS
97
n
96
HIS
97
A
LEU
98
n
97
LEU
98
A
THR
99
n
98
THR
99
A
ASP
100
n
99
ASP
100
A
LYS
101
n
100
LYS
101
A
SER
102
n
101
SER
102
A
GLU
103
n
102
GLU
103
A
THR
104
n
103
THR
104
A
ILE
105
n
104
ILE
105
A
ARG
106
n
105
ARG
106
A
PRO
107
n
106
PRO
107
A
GLU
108
n
107
GLU
108
A
LEU
109
n
108
LEU
109
A
SER
110
n
109
SER
110
A
ASN
111
n
110
ASN
111
A
ALA
112
n
111
ALA
112
A
SER
113
n
112
SER
113
A
ASP
114
n
113
ASP
114
A
LYS
115
n
114
LYS
115
A
VAL
116
n
115
VAL
116
A
ALA
117
n
116
ALA
117
A
SER
118
n
117
SER
118
A
ALA
119
n
118
ALA
119
A
SER
120
n
119
SER
120
A
SER
121
n
120
SER
121
A
LEU
122
n
121
LEU
122
A
SER
123
n
122
SER
123
A
GLN
124
n
123
GLN
124
A
ASP
125
n
124
ASP
125
A
GLU
126
n
125
GLU
126
A
VAL
127
n
126
VAL
127
A
LYS
128
n
127
LYS
128
A
GLU
129
n
128
GLU
129
A
LEU
130
n
129
LEU
130
A
ASN
131
n
130
ASN
131
A
ARG
132
n
131
ARG
132
A
LEU
133
n
132
LEU
133
A
LEU
134
n
133
LEU
134
A
GLY
135
n
134
GLY
135
A
LYS
136
n
135
LYS
136
A
VAL
137
n
136
VAL
137
A
ILE
138
n
137
ILE
138
A
HIS
139
n
138
HIS
139
A
ALA
140
n
139
ALA
140
A
PHE
141
n
140
PHE
141
A
n
141
142
A
n
142
143
A
author_and_software_defined_assembly
PQS
2
dimeric
A
MSE
5
SELENOMETHIONINE
A
MSE
4
MET
A
MSE
76
SELENOMETHIONINE
A
MSE
75
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_555
x-y,-y,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
53
A
N
VAL
52
A
O
ILE
96
A
O
ILE
95
A
N
HIS
97
A
N
HIS
96
A
O
LYS
83
A
O
LYS
82
1
A
GLY
2
A
GLY
1
1
Y
1
A
SER
3
A
SER
2
1
Y
1
A
HIS
4
A
HIS
3
1
Y
1
A
ASP
142
A
ASP
141
1
Y
1
A
GLU
143
A
GLU
142
1
Y
1
A
VAL
30
-135.71
-62.98
1
A
PHE
31
-29.85
-46.41
1
A
SER
51
-24.64
-79.26
1
A
ALA
112
-23.15
-63.13
1
A
SER
113
-54.74
-5.05
1
A
ALA
140
-50.81
-8.46
PROTEIN_REP.PARAM
PROTEIN.TOP
WATER_REP.PARAM
WATER.TOP
ION.PARAM
ION.TOP
80.1
4.87
12.88
0.00
4.87
0.00
-9.73
0.292
0.016
0.250
0.250
2.80
24.39
337
6560
5.1
95.5
RANDOM
287948.87
1
RESTRAINED
THROUGHOUT
0.0
MAD
MAXIMUM LIKELIHOOD
FLAT MODEL
42.404
0.31802
0.49
0.47
5.00
0.61
0.60
2.80
24.39
9
1132
5
0
1118
0.008
1.4
20.0
1.04
2.08
1.50
3.68
2.00
4.30
2.00
6.80
2.50
0.451
0.063
0.472
2.98
52
926
6
5.3
87.0
118.1
2.800
24.500
2BV6
8544
2.000
0.07000
1
19.300
99.0
0.95000
2.80
2.98
1
10.00
98.0
refinement
CNS
1.1
data reduction
MOSFLM
data scaling
SCALEPACK
phasing
SOLVE
HTH-TYPE TRANSCRIPTIONAL REGULATOR MGRA
Crystal structure of MgrA, a global regulator and major virulence determinant in Staphylococcus aureus
1
N
N
2
N
N
3
N
N
A
GLN
10
A
GLN
9
HELX_P
A
VAL
30
A
VAL
29
1
1
21
A
VAL
30
A
VAL
29
HELX_P
A
ASN
35
A
ASN
34
1
2
6
A
THR
37
A
THR
36
HELX_P
A
GLU
50
A
GLU
49
1
3
14
A
VAL
55
A
VAL
54
HELX_P
A
LEU
62
A
LEU
61
1
4
8
A
THR
68
A
THR
67
HELX_P
A
VAL
79
A
VAL
78
1
5
12
A
THR
99
A
THR
98
HELX_P
A
SER
110
A
SER
109
1
6
12
A
ASN
111
A
ASN
110
HELX_P
A
SER
120
A
SER
119
1
7
10
A
SER
123
A
SER
122
HELX_P
A
HIS
139
A
HIS
138
1
8
17
covale
1.325
A
MSE
5
A
C
MSE
4
1_555
A
ASN
6
A
N
ASN
5
1_555
covale
1.328
A
ARG
75
A
C
ARG
74
1_555
A
MSE
76
A
N
MSE
75
1_555
covale
1.330
A
MSE
76
A
C
MSE
75
1_555
A
GLU
77
A
N
GLU
76
1_555
TRANSCRIPTIONAL REGULATOR
TRANSCRIPTIONAL REGULATOR, MULTIDRUG RESISTANCE REGULATOR, VIRULENCE DETERMINANT, TRANSCRIPTIONAL FACTORS
2BV6
PDB
1
2BV6
MGRA_STAAU
UNP
1
Q7X448
2
5
2BV6
2
5
2BV6
A
1
1
4
5
142
2BV6
6
143
Q7X448
A
2
5
142
3
anti-parallel
anti-parallel
A
PRO
52
A
PRO
51
A
ASN
54
A
ASN
53
A
VAL
94
A
VAL
93
A
LEU
98
A
LEU
97
A
ILE
82
A
ILE
81
A
ARG
86
A
ARG
85
BINDING SITE FOR RESIDUE SO4 A1142
Software
2
A
ARG
84
A
ARG
83
2
1_555
A
ARG
86
A
ARG
85
2
1_555
178
P 61 2 2