0.008347 0.004819 0.000000 0.000000 0.009639 0.000000 0.000000 0.000000 0.016051 0.00000 0.00000 0.00000 Chen, P.R. Bae, T. Williams, W.A. Duguid, E.M. Rice, P.A. Schneewind, O. He, C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 119.800 119.800 62.300 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Nat.Chem.Biol. 1552-4450 2 591 10.1038/NCHEMBIO820 16980961 An Oxidation-Sensing Mechanism is Used by the Global Regulator Mgra in Staphylococcus Aureus. 2006 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 77.0 1 BENT MIRROR CCD 2005-04-03 SI 111 MAD M x-ray 1 1.5 1.0 14-ID-B APS 1.5 SYNCHROTRON APS BEAMLINE 14-ID-B 16533.510 HTH-TYPE TRANSCRIPTIONAL REGULATOR MGRA RESIDUES 5-142 1 man polymer 96.063 SULFATE ION 1 syn non-polymer 18.015 water 9 nat water MGRA no yes GSH(MSE)NLKEQLCFSLYNAQRQVNRYYSNKVFKKYNLTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKR (MSE)EQVDLIKRERSEVDQREVFIHLTDKSETIRPELSNASDKVASASSLSQDEVKELNRLLGKVIHAFDE GSHMNLKEQLCFSLYNAQRQVNRYYSNKVFKKYNLTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQVDL IKRERSEVDQREVFIHLTDKSETIRPELSNASDKVASASSLSQDEVKELNRLLGKVIHAFDE A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n NEWMAN sample 1280 STAPHYLOCOCCUS AUREUS 469008 ESCHERICHIA COLI BL21(DE3) PET28A PET28A 1 3.90 70 6.60 PROTEIN WAS CRYSTALLIZED FROM 1.6 M AMMONIUM SULFATE, 0.1M MES, PH 6.0, XTALS WERE RINSED IN CRYOPROTECTANT SOLUTIONS CONSISTING OF RESERVOIR BUFFER WITH AN ADDED 10%, 20% AND 25% GLYCEROL RESPECTIVELY. SELENOMETHIONINE (SEMET)-CONTAINING PROTEIN WAS CRYSTALLIZED UNDER THE SAME CONDITION. repository Initial release Version format compliance Version format compliance 1 0 2006-09-20 1 1 2011-05-08 1 2 2011-07-13 PDBE Y PDBE 2005-06-22 REL SO4 SULFATE ION HOH water RESIDUES 5-143 OF THE 147 RESIDUE PROTEIN WITH N-TERMINAL GLY SER HIS CLONING ARTIFACTS. SO4 1142 2 SO4 SO4 1142 A HOH 2001 3 HOH HOH 2001 A HOH 2002 3 HOH HOH 2002 A HOH 2003 3 HOH HOH 2003 A HOH 2004 3 HOH HOH 2004 A HOH 2005 3 HOH HOH 2005 A HOH 2006 3 HOH HOH 2006 A HOH 2007 3 HOH HOH 2007 A HOH 2008 3 HOH HOH 2008 A HOH 2009 3 HOH HOH 2009 A n 1 2 A n 2 3 A n 3 4 A MSE 5 n 4 MSE 5 A ASN 6 n 5 ASN 6 A LEU 7 n 6 LEU 7 A LYS 8 n 7 LYS 8 A GLU 9 n 8 GLU 9 A GLN 10 n 9 GLN 10 A LEU 11 n 10 LEU 11 A CYS 12 n 11 CYS 12 A PHE 13 n 12 PHE 13 A SER 14 n 13 SER 14 A LEU 15 n 14 LEU 15 A TYR 16 n 15 TYR 16 A ASN 17 n 16 ASN 17 A ALA 18 n 17 ALA 18 A GLN 19 n 18 GLN 19 A ARG 20 n 19 ARG 20 A GLN 21 n 20 GLN 21 A VAL 22 n 21 VAL 22 A ASN 23 n 22 ASN 23 A ARG 24 n 23 ARG 24 A TYR 25 n 24 TYR 25 A TYR 26 n 25 TYR 26 A SER 27 n 26 SER 27 A ASN 28 n 27 ASN 28 A LYS 29 n 28 LYS 29 A VAL 30 n 29 VAL 30 A PHE 31 n 30 PHE 31 A LYS 32 n 31 LYS 32 A LYS 33 n 32 LYS 33 A TYR 34 n 33 TYR 34 A ASN 35 n 34 ASN 35 A LEU 36 n 35 LEU 36 A THR 37 n 36 THR 37 A TYR 38 n 37 TYR 38 A PRO 39 n 38 PRO 39 A GLN 40 n 39 GLN 40 A PHE 41 n 40 PHE 41 A LEU 42 n 41 LEU 42 A VAL 43 n 42 VAL 43 A LEU 44 n 43 LEU 44 A THR 45 n 44 THR 45 A ILE 46 n 45 ILE 46 A LEU 47 n 46 LEU 47 A TRP 48 n 47 TRP 48 A ASP 49 n 48 ASP 49 A GLU 50 n 49 GLU 50 A SER 51 n 50 SER 51 A PRO 52 n 51 PRO 52 A VAL 53 n 52 VAL 53 A ASN 54 n 53 ASN 54 A VAL 55 n 54 VAL 55 A LYS 56 n 55 LYS 56 A LYS 57 n 56 LYS 57 A VAL 58 n 57 VAL 58 A VAL 59 n 58 VAL 59 A THR 60 n 59 THR 60 A GLU 61 n 60 GLU 61 A LEU 62 n 61 LEU 62 A ALA 63 n 62 ALA 63 A LEU 64 n 63 LEU 64 A ASP 65 n 64 ASP 65 A THR 66 n 65 THR 66 A GLY 67 n 66 GLY 67 A THR 68 n 67 THR 68 A VAL 69 n 68 VAL 69 A SER 70 n 69 SER 70 A PRO 71 n 70 PRO 71 A LEU 72 n 71 LEU 72 A LEU 73 n 72 LEU 73 A LYS 74 n 73 LYS 74 A ARG 75 n 74 ARG 75 A MSE 76 n 75 MSE 76 A GLU 77 n 76 GLU 77 A GLN 78 n 77 GLN 78 A VAL 79 n 78 VAL 79 A ASP 80 n 79 ASP 80 A LEU 81 n 80 LEU 81 A ILE 82 n 81 ILE 82 A LYS 83 n 82 LYS 83 A ARG 84 n 83 ARG 84 A GLU 85 n 84 GLU 85 A ARG 86 n 85 ARG 86 A SER 87 n 86 SER 87 A GLU 88 n 87 GLU 88 A VAL 89 n 88 VAL 89 A ASP 90 n 89 ASP 90 A GLN 91 n 90 GLN 91 A ARG 92 n 91 ARG 92 A GLU 93 n 92 GLU 93 A VAL 94 n 93 VAL 94 A PHE 95 n 94 PHE 95 A ILE 96 n 95 ILE 96 A HIS 97 n 96 HIS 97 A LEU 98 n 97 LEU 98 A THR 99 n 98 THR 99 A ASP 100 n 99 ASP 100 A LYS 101 n 100 LYS 101 A SER 102 n 101 SER 102 A GLU 103 n 102 GLU 103 A THR 104 n 103 THR 104 A ILE 105 n 104 ILE 105 A ARG 106 n 105 ARG 106 A PRO 107 n 106 PRO 107 A GLU 108 n 107 GLU 108 A LEU 109 n 108 LEU 109 A SER 110 n 109 SER 110 A ASN 111 n 110 ASN 111 A ALA 112 n 111 ALA 112 A SER 113 n 112 SER 113 A ASP 114 n 113 ASP 114 A LYS 115 n 114 LYS 115 A VAL 116 n 115 VAL 116 A ALA 117 n 116 ALA 117 A SER 118 n 117 SER 118 A ALA 119 n 118 ALA 119 A SER 120 n 119 SER 120 A SER 121 n 120 SER 121 A LEU 122 n 121 LEU 122 A SER 123 n 122 SER 123 A GLN 124 n 123 GLN 124 A ASP 125 n 124 ASP 125 A GLU 126 n 125 GLU 126 A VAL 127 n 126 VAL 127 A LYS 128 n 127 LYS 128 A GLU 129 n 128 GLU 129 A LEU 130 n 129 LEU 130 A ASN 131 n 130 ASN 131 A ARG 132 n 131 ARG 132 A LEU 133 n 132 LEU 133 A LEU 134 n 133 LEU 134 A GLY 135 n 134 GLY 135 A LYS 136 n 135 LYS 136 A VAL 137 n 136 VAL 137 A ILE 138 n 137 ILE 138 A HIS 139 n 138 HIS 139 A ALA 140 n 139 ALA 140 A PHE 141 n 140 PHE 141 A n 141 142 A n 142 143 A author_and_software_defined_assembly PQS 2 dimeric A MSE 5 SELENOMETHIONINE A MSE 4 MET A MSE 76 SELENOMETHIONINE A MSE 75 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 8_555 x-y,-y,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 A N VAL 53 A N VAL 52 A O ILE 96 A O ILE 95 A N HIS 97 A N HIS 96 A O LYS 83 A O LYS 82 1 A GLY 2 A GLY 1 1 Y 1 A SER 3 A SER 2 1 Y 1 A HIS 4 A HIS 3 1 Y 1 A ASP 142 A ASP 141 1 Y 1 A GLU 143 A GLU 142 1 Y 1 A VAL 30 -135.71 -62.98 1 A PHE 31 -29.85 -46.41 1 A SER 51 -24.64 -79.26 1 A ALA 112 -23.15 -63.13 1 A SER 113 -54.74 -5.05 1 A ALA 140 -50.81 -8.46 PROTEIN_REP.PARAM PROTEIN.TOP WATER_REP.PARAM WATER.TOP ION.PARAM ION.TOP 80.1 4.87 12.88 0.00 4.87 0.00 -9.73 0.292 0.016 0.250 0.250 2.80 24.39 337 6560 5.1 95.5 RANDOM 287948.87 1 RESTRAINED THROUGHOUT 0.0 MAD MAXIMUM LIKELIHOOD FLAT MODEL 42.404 0.31802 0.49 0.47 5.00 0.61 0.60 2.80 24.39 9 1132 5 0 1118 0.008 1.4 20.0 1.04 2.08 1.50 3.68 2.00 4.30 2.00 6.80 2.50 0.451 0.063 0.472 2.98 52 926 6 5.3 87.0 118.1 2.800 24.500 2BV6 8544 2.000 0.07000 1 19.300 99.0 0.95000 2.80 2.98 1 10.00 98.0 refinement CNS 1.1 data reduction MOSFLM data scaling SCALEPACK phasing SOLVE HTH-TYPE TRANSCRIPTIONAL REGULATOR MGRA Crystal structure of MgrA, a global regulator and major virulence determinant in Staphylococcus aureus 1 N N 2 N N 3 N N A GLN 10 A GLN 9 HELX_P A VAL 30 A VAL 29 1 1 21 A VAL 30 A VAL 29 HELX_P A ASN 35 A ASN 34 1 2 6 A THR 37 A THR 36 HELX_P A GLU 50 A GLU 49 1 3 14 A VAL 55 A VAL 54 HELX_P A LEU 62 A LEU 61 1 4 8 A THR 68 A THR 67 HELX_P A VAL 79 A VAL 78 1 5 12 A THR 99 A THR 98 HELX_P A SER 110 A SER 109 1 6 12 A ASN 111 A ASN 110 HELX_P A SER 120 A SER 119 1 7 10 A SER 123 A SER 122 HELX_P A HIS 139 A HIS 138 1 8 17 covale 1.325 A MSE 5 A C MSE 4 1_555 A ASN 6 A N ASN 5 1_555 covale 1.328 A ARG 75 A C ARG 74 1_555 A MSE 76 A N MSE 75 1_555 covale 1.330 A MSE 76 A C MSE 75 1_555 A GLU 77 A N GLU 76 1_555 TRANSCRIPTIONAL REGULATOR TRANSCRIPTIONAL REGULATOR, MULTIDRUG RESISTANCE REGULATOR, VIRULENCE DETERMINANT, TRANSCRIPTIONAL FACTORS 2BV6 PDB 1 2BV6 MGRA_STAAU UNP 1 Q7X448 2 5 2BV6 2 5 2BV6 A 1 1 4 5 142 2BV6 6 143 Q7X448 A 2 5 142 3 anti-parallel anti-parallel A PRO 52 A PRO 51 A ASN 54 A ASN 53 A VAL 94 A VAL 93 A LEU 98 A LEU 97 A ILE 82 A ILE 81 A ARG 86 A ARG 85 BINDING SITE FOR RESIDUE SO4 A1142 Software 2 A ARG 84 A ARG 83 2 1_555 A ARG 86 A ARG 85 2 1_555 178 P 61 2 2