0.014071
0.000000
0.002544
0.000000
0.013984
0.000000
0.000000
0.000000
0.014036
0.00000
0.00000
0.00000
Schweizer, E.
Hoffmann-Roeder, A.
Olsen, J.A.
Obst-Sander, U.
Wagner, B.
Kansy, M.
Banner, D.W.
Diederich, F.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
100.25
90.00
71.070
71.510
72.400
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C26 H31 Cl N4 O
451.004
4- [(1R,3AS,4R,8AS,8BR)- 2- (4-CHLOROBENZYL)- 1- ISOPROPYL- 3- OXODECAHYDROPYRROLO[3,4- A]PYRROLIZIN- 4- YL]BENZENECARBOXIMIDAMIDE
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H6 O4
118.088
SUCCINIC ACID
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CA
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
S
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
N
N
90
N
C
N
91
N
N
Y
92
N
C
Y
93
N
C
Y
94
N
C
Y
95
N
C
Y
96
N
C
Y
97
N
C
N
98
R
C
N
99
N
N
N
100
N
C
N
101
N
C
N
102
N
C
N
103
S
C
N
104
R
C
N
105
R
C
N
106
N
N
N
107
N
C
N
108
N
O
N
109
S
C
N
110
N
C
Y
111
N
C
Y
112
N
C
Y
113
N
C
Y
114
N
C
Y
115
N
C
Y
116
N
C
N
117
N
C
N
118
N
C
N
119
N
C
N
120
N
CL
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
N
N
153
S
C
N
154
N
C
N
155
N
O
N
156
N
C
N
157
N
C
N
158
N
C
N
159
N
O
N
160
N
N
N
161
N
O
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
N
N
173
S
C
N
174
N
C
N
175
N
O
N
176
N
C
N
177
N
C
N
178
N
C
N
179
N
O
N
180
N
O
N
181
N
O
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
N
C
N
193
N
C
N
194
N
O
N
195
N
O
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
N
N
202
S
C
N
203
N
C
N
204
N
O
N
205
N
C
Y
206
N
C
Y
207
N
N
Y
208
N
C
Y
209
N
C
Y
210
N
N
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
O
N
223
N
H
N
224
N
H
N
225
N
N
N
226
S
C
N
227
N
C
N
228
N
O
N
229
S
C
N
230
N
C
N
231
N
C
N
232
N
C
N
233
N
O
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
N
C
N
252
N
C
N
253
N
C
N
254
N
C
N
255
N
O
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
N
N
270
S
C
N
271
N
C
N
272
N
O
N
273
N
C
N
274
N
C
N
275
N
C
N
276
N
C
N
277
N
N
N
278
N
O
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
N
N
295
S
C
N
296
N
C
N
297
N
O
N
298
N
C
N
299
N
C
N
300
N
S
N
301
N
C
N
302
N
O
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
NA
N
315
N
N
N
316
S
C
N
317
N
C
N
318
N
O
N
319
N
C
Y
320
N
C
Y
321
N
C
Y
322
N
C
Y
323
N
C
Y
324
N
C
Y
325
N
C
N
326
N
O
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
N
N
339
S
C
N
340
N
C
N
341
N
O
N
342
N
C
N
343
N
C
N
344
N
C
N
345
N
O
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
N
N
356
S
C
N
357
N
C
N
358
N
O
N
359
N
C
N
360
N
O
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
C
N
370
N
O
N
371
N
O
N
372
N
C
N
373
N
C
N
374
N
C
N
375
N
O
N
376
N
O
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
N
N
384
S
C
N
385
N
C
N
386
N
O
N
387
R
C
N
388
N
O
N
389
N
C
N
390
N
O
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
N
N
401
S
C
N
402
N
C
N
403
N
O
N
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
Y
408
N
N
Y
409
N
C
Y
410
N
C
Y
411
N
C
Y
412
N
C
Y
413
N
C
N
414
N
O
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
N
N
428
S
C
N
429
N
C
N
430
N
O
N
431
N
C
Y
432
N
C
Y
433
N
C
Y
434
N
C
Y
435
N
C
Y
436
N
C
Y
437
N
C
N
438
N
O
N
439
N
O
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
N
N
452
S
C
N
453
N
C
N
454
N
O
N
455
N
C
N
456
N
C
N
457
N
C
N
458
N
O
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
E
doub
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
Y
89
N
doub
Y
90
N
sing
Y
91
N
sing
N
92
N
sing
Y
93
N
doub
N
94
N
sing
Y
95
N
sing
N
96
N
sing
Y
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
doub
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
Y
130
N
doub
Y
131
N
sing
Y
132
N
sing
N
133
N
sing
Y
134
N
doub
N
135
N
sing
Y
136
N
sing
N
137
N
sing
Y
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
doub
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
doub
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
doub
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
doub
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
Y
207
N
sing
Y
208
N
doub
Y
209
N
doub
N
210
N
sing
Y
211
N
sing
N
212
N
sing
Y
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
doub
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
doub
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
doub
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
Y
315
N
doub
Y
316
N
sing
Y
317
N
sing
N
318
N
sing
Y
319
N
doub
N
320
N
sing
Y
321
N
doub
N
322
N
sing
Y
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
doub
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
doub
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
doub
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
doub
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
doub
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
Y
397
N
doub
Y
398
N
sing
Y
399
N
sing
N
400
N
sing
Y
401
N
doub
Y
402
N
sing
Y
403
N
sing
N
404
N
sing
Y
405
N
sing
Y
406
N
doub
N
407
N
sing
Y
408
N
doub
N
409
N
sing
Y
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
doub
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
Y
425
N
doub
Y
426
N
sing
Y
427
N
sing
N
428
N
sing
Y
429
N
doub
N
430
N
sing
Y
431
N
doub
N
432
N
sing
Y
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
doub
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
UK
Org.Biomol.Chem.
1477-0520
4
2364
10.1039/B602585D
16763681
Multipolar Interactions in the D Pocket of Thrombin: Large Differences between Tricyclic Imide and Lactam Inhibitors.
2006
10.2210/pdb2cf8/pdb
pdb_00002cf8
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
CCD
2005-10-28
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
0.97001
1.0
X10SA
SLS
0.97001
SYNCHROTRON
SLS BEAMLINE X10SA
29594.055
THROMBIN HEAVY CHAIN
3.4.21.5
CATALYTIC, RESIDUES 364-620
1
man
polymer
1396.450
HIRUDIN IIIA
C-TERMINUS, RESIDUES 55-65
1
syn
polymer
3303.715
THROMBIN LIGHT CHAIN
3.4.21.5
LIGHT CHAIN, RESIDUES 334-361
1
man
polymer
451.004
4- [(1R,3AS,4R,8AS,8BR)- 2- (4-CHLOROBENZYL)- 1- ISOPROPYL- 3- OXODECAHYDROPYRROLO[3,4- A]PYRROLIZIN- 4- YL]BENZENECARBOXIMIDAMIDE
1
syn
non-polymer
22.990
SODIUM ION
1
syn
non-polymer
40.078
CALCIUM ION
1
syn
non-polymer
18.015
water
397
nat
water
no
no
IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM
LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL
QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY
THVFRLKKWIQKVIDQF
IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM
LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL
QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY
THVFRLKKWIQKVIDQF
H
polypeptide(L)
no
yes
(SIN)FEEIPEEYLQ
XFEEIPEEYLQ
I
polypeptide(L)
no
no
ADCGLRPLFEKKSLEDKTERELLESYID
ADCGLRPLFEKKSLEDKTERELLESYID
L
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
HUMAN
sample
9606
HOMO SAPIENS
OVARY
10029
CRICETULUS GRISEUS
HUMAN
sample
9606
HOMO SAPIENS
OVARY
10029
CRICETULUS GRISEUS
1
2.76
43.00
7.40
PH 7.40
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_conn_type
struct_site
repository
Initial release
Advisory
Atomic model
Database references
Derived calculations
Non-polymer description
Structure summary
Version format compliance
Other
Derived calculations
Other
Other
Structure summary
Data collection
Database references
Derived calculations
Other
Refinement description
1
0
2006-06-14
1
1
2011-07-13
1
2
2012-12-12
1
3
2013-08-07
1
4
2013-10-23
1
5
2017-03-29
1
6
2023-12-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_sf
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn_type.id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
THROMBIN-METHOXY2
SHEET
DETERMINATION METHOD: DSSP
THE SHEETS PRESENTED AS "HB" IN EACH CHAIN ON SHEET RECORDS
BELOW IS ACTUALLY A 6-STRANDED BARREL THIS IS REPRESENTED BY
A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS
ARE IDENTICAL.
PDBE
Y
PDBE
2006-02-17
REL
REL
1
H
O
HOH
2016
5.99
1
H
O
HOH
2026
7.13
1
H
O
HOH
2033
6.06
1
L
O
HOH
2061
6.45
1
L
O
HOH
2062
6.94
ESH
4- [(1R,3AS,4R,8AS,8BR)- 2- (4-CHLOROBENZYL)- 1- ISOPROPYL- 3- OXODECAHYDROPYRROLO[3,4- A]PYRROLIZIN- 4- YL]BENZENECARBOXIMIDAMIDE
NA
SODIUM ION
CA
CALCIUM ION
HOH
water
6421
MEDICINAL LEECH
HIRUDO MEDICINALIS
sample
1OYT
PDB ENTRY 1OYT
PDB
experimental model
Anticoagulant, Antithrombotic
N-terminal Asp des-amino Hirudin-3A'
Oligopeptide
ESH
1246
4
ESH
ESH
1246
H
NA
1248
5
NA
NA
1248
H
CA
1249
6
CA
CA
1249
H
HOH
2001
7
HOH
HOH
2001
H
HOH
2002
7
HOH
HOH
2002
H
HOH
2003
7
HOH
HOH
2003
H
HOH
2004
7
HOH
HOH
2004
H
HOH
2005
7
HOH
HOH
2005
H
HOH
2006
7
HOH
HOH
2006
H
HOH
2007
7
HOH
HOH
2007
H
HOH
2008
7
HOH
HOH
2008
H
HOH
2009
7
HOH
HOH
2009
H
HOH
2010
7
HOH
HOH
2010
H
HOH
2011
7
HOH
HOH
2011
H
HOH
2012
7
HOH
HOH
2012
H
HOH
2013
7
HOH
HOH
2013
H
HOH
2014
7
HOH
HOH
2014
H
HOH
2015
7
HOH
HOH
2015
H
HOH
2016
7
HOH
HOH
2016
H
HOH
2017
7
HOH
HOH
2017
H
HOH
2018
7
HOH
HOH
2018
H
HOH
2019
7
HOH
HOH
2019
H
HOH
2020
7
HOH
HOH
2020
H
HOH
2021
7
HOH
HOH
2021
H
HOH
2022
7
HOH
HOH
2022
H
HOH
2023
7
HOH
HOH
2023
H
HOH
2024
7
HOH
HOH
2024
H
HOH
2025
7
HOH
HOH
2025
H
HOH
2026
7
HOH
HOH
2026
H
HOH
2027
7
HOH
HOH
2027
H
HOH
2028
7
HOH
HOH
2028
H
HOH
2029
7
HOH
HOH
2029
H
HOH
2030
7
HOH
HOH
2030
H
HOH
2031
7
HOH
HOH
2031
H
HOH
2032
7
HOH
HOH
2032
H
HOH
2033
7
HOH
HOH
2033
H
HOH
2034
7
HOH
HOH
2034
H
HOH
2035
7
HOH
HOH
2035
H
HOH
2036
7
HOH
HOH
2036
H
HOH
2037
7
HOH
HOH
2037
H
HOH
2038
7
HOH
HOH
2038
H
HOH
2039
7
HOH
HOH
2039
H
HOH
2040
7
HOH
HOH
2040
H
HOH
2041
7
HOH
HOH
2041
H
HOH
2042
7
HOH
HOH
2042
H
HOH
2043
7
HOH
HOH
2043
H
HOH
2044
7
HOH
HOH
2044
H
HOH
2045
7
HOH
HOH
2045
H
HOH
2046
7
HOH
HOH
2046
H
HOH
2047
7
HOH
HOH
2047
H
HOH
2048
7
HOH
HOH
2048
H
HOH
2049
7
HOH
HOH
2049
H
HOH
2050
7
HOH
HOH
2050
H
HOH
2051
7
HOH
HOH
2051
H
HOH
2052
7
HOH
HOH
2052
H
HOH
2053
7
HOH
HOH
2053
H
HOH
2054
7
HOH
HOH
2054
H
HOH
2055
7
HOH
HOH
2055
H
HOH
2056
7
HOH
HOH
2056
H
HOH
2057
7
HOH
HOH
2057
H
HOH
2058
7
HOH
HOH
2058
H
HOH
2059
7
HOH
HOH
2059
H
HOH
2060
7
HOH
HOH
2060
H
HOH
2061
7
HOH
HOH
2061
H
HOH
2062
7
HOH
HOH
2062
H
HOH
2063
7
HOH
HOH
2063
H
HOH
2064
7
HOH
HOH
2064
H
HOH
2065
7
HOH
HOH
2065
H
HOH
2066
7
HOH
HOH
2066
H
HOH
2067
7
HOH
HOH
2067
H
HOH
2068
7
HOH
HOH
2068
H
HOH
2069
7
HOH
HOH
2069
H
HOH
2070
7
HOH
HOH
2070
H
HOH
2071
7
HOH
HOH
2071
H
HOH
2072
7
HOH
HOH
2072
H
HOH
2073
7
HOH
HOH
2073
H
HOH
2074
7
HOH
HOH
2074
H
HOH
2075
7
HOH
HOH
2075
H
HOH
2076
7
HOH
HOH
2076
H
HOH
2077
7
HOH
HOH
2077
H
HOH
2078
7
HOH
HOH
2078
H
HOH
2079
7
HOH
HOH
2079
H
HOH
2080
7
HOH
HOH
2080
H
HOH
2081
7
HOH
HOH
2081
H
HOH
2082
7
HOH
HOH
2082
H
HOH
2083
7
HOH
HOH
2083
H
HOH
2084
7
HOH
HOH
2084
H
HOH
2085
7
HOH
HOH
2085
H
HOH
2086
7
HOH
HOH
2086
H
HOH
2087
7
HOH
HOH
2087
H
HOH
2088
7
HOH
HOH
2088
H
HOH
2089
7
HOH
HOH
2089
H
HOH
2090
7
HOH
HOH
2090
H
HOH
2091
7
HOH
HOH
2091
H
HOH
2092
7
HOH
HOH
2092
H
HOH
2093
7
HOH
HOH
2093
H
HOH
2094
7
HOH
HOH
2094
H
HOH
2095
7
HOH
HOH
2095
H
HOH
2096
7
HOH
HOH
2096
H
HOH
2097
7
HOH
HOH
2097
H
HOH
2098
7
HOH
HOH
2098
H
HOH
2099
7
HOH
HOH
2099
H
HOH
2100
7
HOH
HOH
2100
H
HOH
2101
7
HOH
HOH
2101
H
HOH
2102
7
HOH
HOH
2102
H
HOH
2103
7
HOH
HOH
2103
H
HOH
2104
7
HOH
HOH
2104
H
HOH
2105
7
HOH
HOH
2105
H
HOH
2106
7
HOH
HOH
2106
H
HOH
2107
7
HOH
HOH
2107
H
HOH
2108
7
HOH
HOH
2108
H
HOH
2109
7
HOH
HOH
2109
H
HOH
2110
7
HOH
HOH
2110
H
HOH
2111
7
HOH
HOH
2111
H
HOH
2112
7
HOH
HOH
2112
H
HOH
2113
7
HOH
HOH
2113
H
HOH
2114
7
HOH
HOH
2114
H
HOH
2115
7
HOH
HOH
2115
H
HOH
2116
7
HOH
HOH
2116
H
HOH
2117
7
HOH
HOH
2117
H
HOH
2118
7
HOH
HOH
2118
H
HOH
2119
7
HOH
HOH
2119
H
HOH
2120
7
HOH
HOH
2120
H
HOH
2121
7
HOH
HOH
2121
H
HOH
2122
7
HOH
HOH
2122
H
HOH
2123
7
HOH
HOH
2123
H
HOH
2124
7
HOH
HOH
2124
H
HOH
2125
7
HOH
HOH
2125
H
HOH
2126
7
HOH
HOH
2126
H
HOH
2127
7
HOH
HOH
2127
H
HOH
2128
7
HOH
HOH
2128
H
HOH
2129
7
HOH
HOH
2129
H
HOH
2130
7
HOH
HOH
2130
H
HOH
2131
7
HOH
HOH
2131
H
HOH
2132
7
HOH
HOH
2132
H
HOH
2133
7
HOH
HOH
2133
H
HOH
2134
7
HOH
HOH
2134
H
HOH
2135
7
HOH
HOH
2135
H
HOH
2136
7
HOH
HOH
2136
H
HOH
2137
7
HOH
HOH
2137
H
HOH
2138
7
HOH
HOH
2138
H
HOH
2139
7
HOH
HOH
2139
H
HOH
2140
7
HOH
HOH
2140
H
HOH
2141
7
HOH
HOH
2141
H
HOH
2142
7
HOH
HOH
2142
H
HOH
2143
7
HOH
HOH
2143
H
HOH
2144
7
HOH
HOH
2144
H
HOH
2145
7
HOH
HOH
2145
H
HOH
2146
7
HOH
HOH
2146
H
HOH
2147
7
HOH
HOH
2147
H
HOH
2148
7
HOH
HOH
2148
H
HOH
2149
7
HOH
HOH
2149
H
HOH
2150
7
HOH
HOH
2150
H
HOH
2151
7
HOH
HOH
2151
H
HOH
2152
7
HOH
HOH
2152
H
HOH
2153
7
HOH
HOH
2153
H
HOH
2154
7
HOH
HOH
2154
H
HOH
2155
7
HOH
HOH
2155
H
HOH
2156
7
HOH
HOH
2156
H
HOH
2157
7
HOH
HOH
2157
H
HOH
2158
7
HOH
HOH
2158
H
HOH
2159
7
HOH
HOH
2159
H
HOH
2160
7
HOH
HOH
2160
H
HOH
2161
7
HOH
HOH
2161
H
HOH
2162
7
HOH
HOH
2162
H
HOH
2163
7
HOH
HOH
2163
H
HOH
2164
7
HOH
HOH
2164
H
HOH
2165
7
HOH
HOH
2165
H
HOH
2166
7
HOH
HOH
2166
H
HOH
2167
7
HOH
HOH
2167
H
HOH
2168
7
HOH
HOH
2168
H
HOH
2169
7
HOH
HOH
2169
H
HOH
2170
7
HOH
HOH
2170
H
HOH
2171
7
HOH
HOH
2171
H
HOH
2172
7
HOH
HOH
2172
H
HOH
2173
7
HOH
HOH
2173
H
HOH
2174
7
HOH
HOH
2174
H
HOH
2175
7
HOH
HOH
2175
H
HOH
2176
7
HOH
HOH
2176
H
HOH
2177
7
HOH
HOH
2177
H
HOH
2178
7
HOH
HOH
2178
H
HOH
2179
7
HOH
HOH
2179
H
HOH
2180
7
HOH
HOH
2180
H
HOH
2181
7
HOH
HOH
2181
H
HOH
2182
7
HOH
HOH
2182
H
HOH
2183
7
HOH
HOH
2183
H
HOH
2184
7
HOH
HOH
2184
H
HOH
2185
7
HOH
HOH
2185
H
HOH
2186
7
HOH
HOH
2186
H
HOH
2187
7
HOH
HOH
2187
H
HOH
2188
7
HOH
HOH
2188
H
HOH
2189
7
HOH
HOH
2189
H
HOH
2190
7
HOH
HOH
2190
H
HOH
2191
7
HOH
HOH
2191
H
HOH
2192
7
HOH
HOH
2192
H
HOH
2193
7
HOH
HOH
2193
H
HOH
2194
7
HOH
HOH
2194
H
HOH
2195
7
HOH
HOH
2195
H
HOH
2196
7
HOH
HOH
2196
H
HOH
2197
7
HOH
HOH
2197
H
HOH
2198
7
HOH
HOH
2198
H
HOH
2199
7
HOH
HOH
2199
H
HOH
2200
7
HOH
HOH
2200
H
HOH
2201
7
HOH
HOH
2201
H
HOH
2202
7
HOH
HOH
2202
H
HOH
2203
7
HOH
HOH
2203
H
HOH
2204
7
HOH
HOH
2204
H
HOH
2205
7
HOH
HOH
2205
H
HOH
2206
7
HOH
HOH
2206
H
HOH
2207
7
HOH
HOH
2207
H
HOH
2208
7
HOH
HOH
2208
H
HOH
2209
7
HOH
HOH
2209
H
HOH
2210
7
HOH
HOH
2210
H
HOH
2211
7
HOH
HOH
2211
H
HOH
2212
7
HOH
HOH
2212
H
HOH
2213
7
HOH
HOH
2213
H
HOH
2214
7
HOH
HOH
2214
H
HOH
2215
7
HOH
HOH
2215
H
HOH
2216
7
HOH
HOH
2216
H
HOH
2217
7
HOH
HOH
2217
H
HOH
2218
7
HOH
HOH
2218
H
HOH
2219
7
HOH
HOH
2219
H
HOH
2220
7
HOH
HOH
2220
H
HOH
2221
7
HOH
HOH
2221
H
HOH
2222
7
HOH
HOH
2222
H
HOH
2223
7
HOH
HOH
2223
H
HOH
2224
7
HOH
HOH
2224
H
HOH
2225
7
HOH
HOH
2225
H
HOH
2226
7
HOH
HOH
2226
H
HOH
2227
7
HOH
HOH
2227
H
HOH
2228
7
HOH
HOH
2228
H
HOH
2229
7
HOH
HOH
2229
H
HOH
2230
7
HOH
HOH
2230
H
HOH
2231
7
HOH
HOH
2231
H
HOH
2232
7
HOH
HOH
2232
H
HOH
2233
7
HOH
HOH
2233
H
HOH
2234
7
HOH
HOH
2234
H
HOH
2235
7
HOH
HOH
2235
H
HOH
2236
7
HOH
HOH
2236
H
HOH
2237
7
HOH
HOH
2237
H
HOH
2238
7
HOH
HOH
2238
H
HOH
2239
7
HOH
HOH
2239
H
HOH
2240
7
HOH
HOH
2240
H
HOH
2241
7
HOH
HOH
2241
H
HOH
2242
7
HOH
HOH
2242
H
HOH
2243
7
HOH
HOH
2243
H
HOH
2244
7
HOH
HOH
2244
H
HOH
2245
7
HOH
HOH
2245
H
HOH
2246
7
HOH
HOH
2246
H
HOH
2247
7
HOH
HOH
2247
H
HOH
2248
7
HOH
HOH
2248
H
HOH
2249
7
HOH
HOH
2249
H
HOH
2250
7
HOH
HOH
2250
H
HOH
2251
7
HOH
HOH
2251
H
HOH
2252
7
HOH
HOH
2252
H
HOH
2253
7
HOH
HOH
2253
H
HOH
2254
7
HOH
HOH
2254
H
HOH
2255
7
HOH
HOH
2255
H
HOH
2256
7
HOH
HOH
2256
H
HOH
2257
7
HOH
HOH
2257
H
HOH
2258
7
HOH
HOH
2258
H
HOH
2259
7
HOH
HOH
2259
H
HOH
2260
7
HOH
HOH
2260
H
HOH
2261
7
HOH
HOH
2261
H
HOH
2262
7
HOH
HOH
2262
H
HOH
2263
7
HOH
HOH
2263
H
HOH
2264
7
HOH
HOH
2264
H
HOH
2265
7
HOH
HOH
2265
H
HOH
2266
7
HOH
HOH
2266
H
HOH
2267
7
HOH
HOH
2267
H
HOH
2268
7
HOH
HOH
2268
H
HOH
2269
7
HOH
HOH
2269
H
HOH
2270
7
HOH
HOH
2270
H
HOH
2271
7
HOH
HOH
2271
H
HOH
2272
7
HOH
HOH
2272
H
HOH
2273
7
HOH
HOH
2273
H
HOH
2274
7
HOH
HOH
2274
H
HOH
2275
7
HOH
HOH
2275
H
HOH
2276
7
HOH
HOH
2276
H
HOH
2277
7
HOH
HOH
2277
H
HOH
2278
7
HOH
HOH
2278
H
HOH
2279
7
HOH
HOH
2279
H
HOH
2280
7
HOH
HOH
2280
H
HOH
2281
7
HOH
HOH
2281
H
HOH
2282
7
HOH
HOH
2282
H
HOH
2283
7
HOH
HOH
2283
H
HOH
2284
7
HOH
HOH
2284
H
HOH
2285
7
HOH
HOH
2285
H
HOH
2286
7
HOH
HOH
2286
H
HOH
2287
7
HOH
HOH
2287
H
HOH
2288
7
HOH
HOH
2288
H
HOH
2289
7
HOH
HOH
2289
H
HOH
2290
7
HOH
HOH
2290
H
HOH
2291
7
HOH
HOH
2291
H
HOH
2292
7
HOH
HOH
2292
H
HOH
2293
7
HOH
HOH
2293
H
HOH
2294
7
HOH
HOH
2294
H
HOH
2295
7
HOH
HOH
2295
H
HOH
2296
7
HOH
HOH
2296
H
HOH
2297
7
HOH
HOH
2297
H
HOH
2298
7
HOH
HOH
2298
H
HOH
2299
7
HOH
HOH
2299
H
HOH
2300
7
HOH
HOH
2300
H
HOH
2301
7
HOH
HOH
2301
H
HOH
2302
7
HOH
HOH
2302
H
HOH
2303
7
HOH
HOH
2303
H
HOH
2304
7
HOH
HOH
2304
H
HOH
2305
7
HOH
HOH
2305
H
HOH
2306
7
HOH
HOH
2306
H
HOH
2307
7
HOH
HOH
2307
H
HOH
2308
7
HOH
HOH
2308
H
HOH
2309
7
HOH
HOH
2309
H
HOH
2310
7
HOH
HOH
2310
H
HOH
2311
7
HOH
HOH
2311
H
HOH
2312
7
HOH
HOH
2312
H
HOH
2313
7
HOH
HOH
2313
H
HOH
2314
7
HOH
HOH
2314
H
HOH
2315
7
HOH
HOH
2315
H
HOH
2316
7
HOH
HOH
2316
H
HOH
2317
7
HOH
HOH
2317
H
HOH
2318
7
HOH
HOH
2318
H
HOH
2319
7
HOH
HOH
2319
H
HOH
2320
7
HOH
HOH
2320
H
HOH
2321
7
HOH
HOH
2321
H
HOH
2322
7
HOH
HOH
2322
H
HOH
2323
7
HOH
HOH
2323
H
HOH
2324
7
HOH
HOH
2324
H
HOH
2325
7
HOH
HOH
2325
H
HOH
2326
7
HOH
HOH
2326
H
HOH
2327
7
HOH
HOH
2327
H
HOH
2328
7
HOH
HOH
2328
H
HOH
2329
7
HOH
HOH
2329
H
HOH
2330
7
HOH
HOH
2330
H
HOH
2001
7
HOH
HOH
2001
I
HOH
2002
7
HOH
HOH
2002
I
HOH
2003
7
HOH
HOH
2003
I
HOH
2004
7
HOH
HOH
2004
I
HOH
2001
7
HOH
HOH
2001
L
HOH
2002
7
HOH
HOH
2002
L
HOH
2003
7
HOH
HOH
2003
L
HOH
2004
7
HOH
HOH
2004
L
HOH
2005
7
HOH
HOH
2005
L
HOH
2006
7
HOH
HOH
2006
L
HOH
2007
7
HOH
HOH
2007
L
HOH
2008
7
HOH
HOH
2008
L
HOH
2009
7
HOH
HOH
2009
L
HOH
2010
7
HOH
HOH
2010
L
HOH
2011
7
HOH
HOH
2011
L
HOH
2012
7
HOH
HOH
2012
L
HOH
2013
7
HOH
HOH
2013
L
HOH
2014
7
HOH
HOH
2014
L
HOH
2015
7
HOH
HOH
2015
L
HOH
2016
7
HOH
HOH
2016
L
HOH
2017
7
HOH
HOH
2017
L
HOH
2018
7
HOH
HOH
2018
L
HOH
2019
7
HOH
HOH
2019
L
HOH
2020
7
HOH
HOH
2020
L
HOH
2021
7
HOH
HOH
2021
L
HOH
2022
7
HOH
HOH
2022
L
HOH
2023
7
HOH
HOH
2023
L
HOH
2024
7
HOH
HOH
2024
L
HOH
2025
7
HOH
HOH
2025
L
HOH
2026
7
HOH
HOH
2026
L
HOH
2027
7
HOH
HOH
2027
L
HOH
2028
7
HOH
HOH
2028
L
HOH
2029
7
HOH
HOH
2029
L
HOH
2030
7
HOH
HOH
2030
L
HOH
2031
7
HOH
HOH
2031
L
HOH
2032
7
HOH
HOH
2032
L
HOH
2033
7
HOH
HOH
2033
L
HOH
2034
7
HOH
HOH
2034
L
HOH
2035
7
HOH
HOH
2035
L
HOH
2036
7
HOH
HOH
2036
L
HOH
2037
7
HOH
HOH
2037
L
HOH
2038
7
HOH
HOH
2038
L
HOH
2039
7
HOH
HOH
2039
L
HOH
2040
7
HOH
HOH
2040
L
HOH
2041
7
HOH
HOH
2041
L
HOH
2042
7
HOH
HOH
2042
L
HOH
2043
7
HOH
HOH
2043
L
HOH
2044
7
HOH
HOH
2044
L
HOH
2045
7
HOH
HOH
2045
L
HOH
2046
7
HOH
HOH
2046
L
HOH
2047
7
HOH
HOH
2047
L
HOH
2048
7
HOH
HOH
2048
L
HOH
2049
7
HOH
HOH
2049
L
HOH
2050
7
HOH
HOH
2050
L
HOH
2051
7
HOH
HOH
2051
L
HOH
2052
7
HOH
HOH
2052
L
HOH
2053
7
HOH
HOH
2053
L
HOH
2054
7
HOH
HOH
2054
L
HOH
2055
7
HOH
HOH
2055
L
HOH
2056
7
HOH
HOH
2056
L
HOH
2057
7
HOH
HOH
2057
L
HOH
2058
7
HOH
HOH
2058
L
HOH
2059
7
HOH
HOH
2059
L
HOH
2060
7
HOH
HOH
2060
L
HOH
2061
7
HOH
HOH
2061
L
HOH
2062
7
HOH
HOH
2062
L
HOH
2063
7
HOH
HOH
2063
L
ILE
16
n
1
ILE
16
H
VAL
17
n
2
VAL
17
H
GLU
18
n
3
GLU
18
H
GLY
19
n
4
GLY
19
H
SER
20
n
5
SER
20
H
ASP
21
n
6
ASP
21
H
ALA
22
n
7
ALA
22
H
GLU
23
n
8
GLU
23
H
ILE
24
n
9
ILE
24
H
GLY
25
n
10
GLY
25
H
MET
26
n
11
MET
26
H
SER
27
n
12
SER
27
H
PRO
28
n
13
PRO
28
H
TRP
29
n
14
TRP
29
H
GLN
30
n
15
GLN
30
H
VAL
31
n
16
VAL
31
H
MET
32
n
17
MET
32
H
LEU
33
n
18
LEU
33
H
PHE
34
n
19
PHE
34
H
ARG
35
n
20
ARG
35
H
LYS
36
n
21
LYS
36
H
SER
36
n
22
A
SER
36
H
PRO
37
n
23
PRO
37
H
GLN
38
n
24
GLN
38
H
GLU
39
n
25
GLU
39
H
LEU
40
n
26
LEU
40
H
LEU
41
n
27
LEU
41
H
CYS
42
n
28
CYS
42
H
GLY
43
n
29
GLY
43
H
ALA
44
n
30
ALA
44
H
SER
45
n
31
SER
45
H
LEU
46
n
32
LEU
46
H
ILE
47
n
33
ILE
47
H
SER
48
n
34
SER
48
H
ASP
49
n
35
ASP
49
H
ARG
50
n
36
ARG
50
H
TRP
51
n
37
TRP
51
H
VAL
52
n
38
VAL
52
H
LEU
53
n
39
LEU
53
H
THR
54
n
40
THR
54
H
ALA
55
n
41
ALA
55
H
ALA
56
n
42
ALA
56
H
HIS
57
n
43
HIS
57
H
CYS
58
n
44
CYS
58
H
LEU
59
n
45
LEU
59
H
LEU
60
n
46
LEU
60
H
TYR
60
n
47
A
TYR
60
H
PRO
60
n
48
B
PRO
60
H
PRO
60
n
49
C
PRO
60
H
TRP
60
n
50
D
TRP
60
H
ASP
60
n
51
E
ASP
60
H
LYS
60
n
52
F
LYS
60
H
ASN
60
n
53
G
ASN
60
H
PHE
60
n
54
H
PHE
60
H
THR
60
n
55
I
THR
60
H
GLU
61
n
56
GLU
61
H
ASN
62
n
57
ASN
62
H
ASP
63
n
58
ASP
63
H
LEU
64
n
59
LEU
64
H
LEU
65
n
60
LEU
65
H
VAL
66
n
61
VAL
66
H
ARG
67
n
62
ARG
67
H
ILE
68
n
63
ILE
68
H
GLY
69
n
64
GLY
69
H
LYS
70
n
65
LYS
70
H
HIS
71
n
66
HIS
71
H
SER
72
n
67
SER
72
H
ARG
73
n
68
ARG
73
H
THR
74
n
69
THR
74
H
ARG
75
n
70
ARG
75
H
TYR
76
n
71
TYR
76
H
GLU
77
n
72
GLU
77
H
ARG
77
n
73
A
ARG
77
H
ASN
78
n
74
ASN
78
H
ILE
79
n
75
ILE
79
H
GLU
80
n
76
GLU
80
H
LYS
81
n
77
LYS
81
H
ILE
82
n
78
ILE
82
H
SER
83
n
79
SER
83
H
MET
84
n
80
MET
84
H
LEU
85
n
81
LEU
85
H
GLU
86
n
82
GLU
86
H
LYS
87
n
83
LYS
87
H
ILE
88
n
84
ILE
88
H
TYR
89
n
85
TYR
89
H
ILE
90
n
86
ILE
90
H
HIS
91
n
87
HIS
91
H
PRO
92
n
88
PRO
92
H
ARG
93
n
89
ARG
93
H
TYR
94
n
90
TYR
94
H
ASN
95
n
91
ASN
95
H
TRP
96
n
92
TRP
96
H
ARG
97
n
93
ARG
97
H
GLU
97
n
94
A
GLU
97
H
ASN
98
n
95
ASN
98
H
LEU
99
n
96
LEU
99
H
ASP
100
n
97
ASP
100
H
ARG
101
n
98
ARG
101
H
ASP
102
n
99
ASP
102
H
ILE
103
n
100
ILE
103
H
ALA
104
n
101
ALA
104
H
LEU
105
n
102
LEU
105
H
MET
106
n
103
MET
106
H
LYS
107
n
104
LYS
107
H
LEU
108
n
105
LEU
108
H
LYS
109
n
106
LYS
109
H
LYS
110
n
107
LYS
110
H
PRO
111
n
108
PRO
111
H
VAL
112
n
109
VAL
112
H
ALA
113
n
110
ALA
113
H
PHE
114
n
111
PHE
114
H
SER
115
n
112
SER
115
H
ASP
116
n
113
ASP
116
H
TYR
117
n
114
TYR
117
H
ILE
118
n
115
ILE
118
H
HIS
119
n
116
HIS
119
H
PRO
120
n
117
PRO
120
H
VAL
121
n
118
VAL
121
H
CYS
122
n
119
CYS
122
H
LEU
123
n
120
LEU
123
H
PRO
124
n
121
PRO
124
H
ASP
125
n
122
ASP
125
H
ARG
126
n
123
ARG
126
H
GLU
127
n
124
GLU
127
H
THR
128
n
125
THR
128
H
ALA
129
n
126
ALA
129
H
ALA
129
n
127
A
ALA
129
H
SER
129
n
128
B
SER
129
H
LEU
129
n
129
C
LEU
129
H
LEU
130
n
130
LEU
130
H
GLN
131
n
131
GLN
131
H
ALA
132
n
132
ALA
132
H
GLY
133
n
133
GLY
133
H
TYR
134
n
134
TYR
134
H
LYS
135
n
135
LYS
135
H
GLY
136
n
136
GLY
136
H
ARG
137
n
137
ARG
137
H
VAL
138
n
138
VAL
138
H
THR
139
n
139
THR
139
H
GLY
140
n
140
GLY
140
H
TRP
141
n
141
TRP
141
H
GLY
142
n
142
GLY
142
H
ASN
143
n
143
ASN
143
H
LEU
144
n
144
LEU
144
H
LYS
145
n
145
LYS
145
H
GLU
146
n
146
GLU
146
H
THR
147
n
147
THR
147
H
n
148
A
147
H
n
149
B
147
H
n
150
C
147
H
n
151
D
147
H
n
152
E
147
H
n
153
F
147
H
n
154
G
147
H
GLY
150
n
155
GLY
150
H
GLN
151
n
156
GLN
151
H
PRO
152
n
157
PRO
152
H
SER
153
n
158
SER
153
H
VAL
154
n
159
VAL
154
H
LEU
155
n
160
LEU
155
H
GLN
156
n
161
GLN
156
H
VAL
157
n
162
VAL
157
H
VAL
158
n
163
VAL
158
H
ASN
159
n
164
ASN
159
H
LEU
160
n
165
LEU
160
H
PRO
161
n
166
PRO
161
H
ILE
162
n
167
ILE
162
H
VAL
163
n
168
VAL
163
H
GLU
164
n
169
GLU
164
H
ARG
165
n
170
ARG
165
H
PRO
166
n
171
PRO
166
H
VAL
167
n
172
VAL
167
H
CYS
168
n
173
CYS
168
H
LYS
169
n
174
LYS
169
H
ASP
170
n
175
ASP
170
H
SER
171
n
176
SER
171
H
THR
172
n
177
THR
172
H
ARG
173
n
178
ARG
173
H
ILE
174
n
179
ILE
174
H
ARG
175
n
180
ARG
175
H
ILE
176
n
181
ILE
176
H
THR
177
n
182
THR
177
H
ASP
178
n
183
ASP
178
H
ASN
179
n
184
ASN
179
H
MET
180
n
185
MET
180
H
PHE
181
n
186
PHE
181
H
CYS
182
n
187
CYS
182
H
ALA
183
n
188
ALA
183
H
GLY
184
n
189
GLY
184
H
TYR
184
n
190
A
TYR
184
H
LYS
185
n
191
LYS
185
H
PRO
186
n
192
PRO
186
H
ASP
186
n
193
A
ASP
186
H
GLU
186
n
194
B
GLU
186
H
GLY
186
n
195
C
GLY
186
H
LYS
186
n
196
D
LYS
186
H
ARG
187
n
197
ARG
187
H
GLY
188
n
198
GLY
188
H
ASP
189
n
199
ASP
189
H
ALA
190
n
200
ALA
190
H
CYS
191
n
201
CYS
191
H
GLU
192
n
202
GLU
192
H
GLY
193
n
203
GLY
193
H
ASP
194
n
204
ASP
194
H
SER
195
n
205
SER
195
H
GLY
196
n
206
GLY
196
H
GLY
197
n
207
GLY
197
H
PRO
198
n
208
PRO
198
H
PHE
199
n
209
PHE
199
H
VAL
200
n
210
VAL
200
H
MET
201
n
211
MET
201
H
LYS
202
n
212
LYS
202
H
SER
203
n
213
SER
203
H
PRO
204
n
214
PRO
204
H
PHE
204
n
215
A
PHE
204
H
ASN
204
n
216
B
ASN
204
H
ASN
205
n
217
ASN
205
H
ARG
206
n
218
ARG
206
H
TRP
207
n
219
TRP
207
H
TYR
208
n
220
TYR
208
H
GLN
209
n
221
GLN
209
H
MET
210
n
222
MET
210
H
GLY
211
n
223
GLY
211
H
ILE
212
n
224
ILE
212
H
VAL
213
n
225
VAL
213
H
SER
214
n
226
SER
214
H
TRP
215
n
227
TRP
215
H
GLY
216
n
228
GLY
216
H
GLU
217
n
229
GLU
217
H
GLY
219
n
230
GLY
219
H
CYS
220
n
231
CYS
220
H
ASP
221
n
232
ASP
221
H
ARG
221
n
233
A
ARG
221
H
ASP
222
n
234
ASP
222
H
GLY
223
n
235
GLY
223
H
LYS
224
n
236
LYS
224
H
TYR
225
n
237
TYR
225
H
GLY
226
n
238
GLY
226
H
PHE
227
n
239
PHE
227
H
TYR
228
n
240
TYR
228
H
THR
229
n
241
THR
229
H
HIS
230
n
242
HIS
230
H
VAL
231
n
243
VAL
231
H
PHE
232
n
244
PHE
232
H
ARG
233
n
245
ARG
233
H
LEU
234
n
246
LEU
234
H
LYS
235
n
247
LYS
235
H
LYS
236
n
248
LYS
236
H
TRP
237
n
249
TRP
237
H
ILE
238
n
250
ILE
238
H
GLN
239
n
251
GLN
239
H
LYS
240
n
252
LYS
240
H
VAL
241
n
253
VAL
241
H
ILE
242
n
254
ILE
242
H
ASP
243
n
255
ASP
243
H
GLN
244
n
256
GLN
244
H
PHE
245
n
257
PHE
245
H
SIN
1
n
1
SIN
1
I
PHE
2
n
2
PHE
2
I
GLU
3
n
3
GLU
3
I
GLU
4
n
4
GLU
4
I
ILE
5
n
5
ILE
5
I
PRO
6
n
6
PRO
6
I
n
7
7
I
n
8
8
I
n
9
9
I
n
10
10
I
n
11
11
I
ALA
1
n
1
B
ALA
1
L
ASP
1
n
2
A
ASP
1
L
CYS
1
n
3
CYS
1
L
GLY
2
n
4
GLY
2
L
LEU
3
n
5
LEU
3
L
ARG
4
n
6
ARG
4
L
PRO
5
n
7
PRO
5
L
LEU
6
n
8
LEU
6
L
PHE
7
n
9
PHE
7
L
GLU
8
n
10
GLU
8
L
LYS
9
n
11
LYS
9
L
LYS
10
n
12
LYS
10
L
SER
11
n
13
SER
11
L
LEU
12
n
14
LEU
12
L
GLU
13
n
15
GLU
13
L
ASP
14
n
16
ASP
14
L
LYS
14
n
17
A
LYS
14
L
THR
14
n
18
B
THR
14
L
GLU
14
n
19
C
GLU
14
L
ARG
14
n
20
D
ARG
14
L
GLU
14
n
21
E
GLU
14
L
LEU
14
n
22
F
LEU
14
L
LEU
14
n
23
G
LEU
14
L
GLU
14
n
24
H
GLU
14
L
SER
14
n
25
I
SER
14
L
TYR
14
n
26
J
TYR
14
L
ILE
14
n
27
K
ILE
14
L
ASP
14
n
28
L
ASP
14
L
1.5253
-0.6919
0.4700
1.9467
-0.7005
2.5848
-0.0092
-0.0835
-0.0463
0.0701
0.0208
0.1390
-0.1132
-0.2198
-0.0117
-0.1429
0.0407
0.0192
-0.1313
-0.0134
-0.0836
refined
-0.1020
10.6980
24.5030
X-RAY DIFFRACTION
1.4980
-0.8022
0.1992
1.4295
-0.2733
0.9882
0.0865
0.1038
-0.0805
-0.0783
-0.0713
0.0421
0.0601
0.0555
-0.0152
-0.1414
0.0195
-0.0033
-0.1417
-0.0160
-0.1107
refined
14.1670
-0.8860
19.8950
X-RAY DIFFRACTION
12.6290
5.0890
-5.7962
11.6787
7.6309
12.9772
0.2601
0.4360
-0.0696
-0.7144
-0.1741
-0.5223
0.1473
-0.0795
-0.0859
0.0550
0.0913
-0.0355
0.1102
-0.0750
0.0345
refined
8.1500
-4.7800
-1.5520
X-RAY DIFFRACTION
L
1
L
14
X-RAY DIFFRACTION
1
H
16
H
245
X-RAY DIFFRACTION
2
I
1
I
6
X-RAY DIFFRACTION
3
software_defined_assembly
PQS
3
trimeric
3570
-21.6
15390
H
LYS
169
A
O
LYS
174
1_555
H
CA
1249
F
CA
CA
1_555
H
THR
172
A
O
THR
177
1_555
72.6
H
LYS
169
A
O
LYS
174
1_555
H
CA
1249
F
CA
CA
1_555
A
H
PHE
204
A
O
PHE
215
4_546
89.8
H
THR
172
A
O
THR
177
1_555
H
CA
1249
F
CA
CA
1_555
A
H
PHE
204
A
O
PHE
215
4_546
87.8
H
LYS
169
A
O
LYS
174
1_555
H
CA
1249
F
CA
CA
1_555
H
HOH
2237
G
O
HOH
1_555
79.4
H
THR
172
A
O
THR
177
1_555
H
CA
1249
F
CA
CA
1_555
H
HOH
2237
G
O
HOH
1_555
148.8
A
H
PHE
204
A
O
PHE
215
4_546
H
CA
1249
F
CA
CA
1_555
H
HOH
2237
G
O
HOH
1_555
78.4
H
LYS
169
A
O
LYS
174
1_555
H
CA
1249
F
CA
CA
1_555
H
HOH
2245
G
O
HOH
1_555
62.7
H
THR
172
A
O
THR
177
1_555
H
CA
1249
F
CA
CA
1_555
H
HOH
2245
G
O
HOH
1_555
74.2
A
H
PHE
204
A
O
PHE
215
4_546
H
CA
1249
F
CA
CA
1_555
H
HOH
2245
G
O
HOH
1_555
150.4
H
HOH
2237
G
O
HOH
1_555
H
CA
1249
F
CA
CA
1_555
H
HOH
2245
G
O
HOH
1_555
105.0
H
LYS
169
A
O
LYS
174
1_555
H
CA
1249
F
CA
CA
1_555
H
HOH
2284
G
O
HOH
4_546
163.2
H
THR
172
A
O
THR
177
1_555
H
CA
1249
F
CA
CA
1_555
H
HOH
2284
G
O
HOH
4_546
92.4
A
H
PHE
204
A
O
PHE
215
4_546
H
CA
1249
F
CA
CA
1_555
H
HOH
2284
G
O
HOH
4_546
81.8
H
HOH
2237
G
O
HOH
1_555
H
CA
1249
F
CA
CA
1_555
H
HOH
2284
G
O
HOH
4_546
112.8
H
HOH
2245
G
O
HOH
1_555
H
CA
1249
F
CA
CA
1_555
H
HOH
2284
G
O
HOH
4_546
121.5
A
H
ARG
221
A
O
ARG
233
1_555
H
NA
1248
E
NA
NA
1_555
H
LYS
224
A
O
LYS
236
1_555
94.7
A
H
ARG
221
A
O
ARG
233
1_555
H
NA
1248
E
NA
NA
1_555
H
HOH
2261
G
O
HOH
1_555
87.7
H
LYS
224
A
O
LYS
236
1_555
H
NA
1248
E
NA
NA
1_555
H
HOH
2261
G
O
HOH
1_555
93.6
A
H
ARG
221
A
O
ARG
233
1_555
H
NA
1248
E
NA
NA
1_555
H
HOH
2304
G
O
HOH
1_555
107.5
H
LYS
224
A
O
LYS
236
1_555
H
NA
1248
E
NA
NA
1_555
H
HOH
2304
G
O
HOH
1_555
157.8
H
HOH
2261
G
O
HOH
1_555
H
NA
1248
E
NA
NA
1_555
H
HOH
2304
G
O
HOH
1_555
85.4
A
H
ARG
221
A
O
ARG
233
1_555
H
NA
1248
E
NA
NA
1_555
H
HOH
2312
G
O
HOH
1_555
163.3
H
LYS
224
A
O
LYS
236
1_555
H
NA
1248
E
NA
NA
1_555
H
HOH
2312
G
O
HOH
1_555
71.7
H
HOH
2261
G
O
HOH
1_555
H
NA
1248
E
NA
NA
1_555
H
HOH
2312
G
O
HOH
1_555
83.7
H
HOH
2304
G
O
HOH
1_555
H
NA
1248
E
NA
NA
1_555
H
HOH
2312
G
O
HOH
1_555
86.1
A
H
ARG
221
A
O
ARG
233
1_555
H
NA
1248
E
NA
NA
1_555
H
HOH
2313
G
O
HOH
1_555
100.9
H
LYS
224
A
O
LYS
236
1_555
H
NA
1248
E
NA
NA
1_555
H
HOH
2313
G
O
HOH
1_555
82.3
H
HOH
2261
G
O
HOH
1_555
H
NA
1248
E
NA
NA
1_555
H
HOH
2313
G
O
HOH
1_555
170.7
H
HOH
2304
G
O
HOH
1_555
H
NA
1248
E
NA
NA
1_555
H
HOH
2313
G
O
HOH
1_555
95.2
H
HOH
2312
G
O
HOH
1_555
H
NA
1248
E
NA
NA
1_555
H
HOH
2313
G
O
HOH
1_555
87.1
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
H
N
SER
20
A
N
SER
5
H
O
VAL
157
A
O
VAL
162
H
N
LEU
160
A
N
LEU
165
H
O
GLY
136
A
O
GLY
136
H
N
THR
139
A
N
THR
139
H
O
PRO
198
A
O
PRO
208
H
N
MET
201
A
N
MET
211
H
O
TYR
208
A
O
TYR
220
H
N
SER
214
A
N
SER
226
H
O
PHE
227
A
O
PHE
239
H
N
TYR
228
A
N
TYR
240
H
O
PHE
181
A
O
PHE
186
H
N
ARG
35
A
N
ARG
20
H
O
GLU
39
A
O
GLU
25
H
N
SER
45
A
N
SER
31
H
O
LEU
53
A
O
LEU
39
H
N
THR
54
A
N
THR
40
H
O
ALA
104
A
O
ALA
101
H
O
LYS
107
A
O
LYS
104
H
N
GLU
86
A
N
GLU
82
H
N
LEU
85
A
N
LEU
81
H
O
LEU
64
A
O
LEU
59
H
N
ARG
67
A
N
ARG
62
H
O
MET
32
A
O
MET
17
A
H
N
TYR
60
A
N
TYR
47
F
H
O
LYS
60
A
O
LYS
52
1
H
HOH
2050
G
HOH
1
H
HOH
2120
G
HOH
1
H
CG
ARG
75
A
CG
ARG
70
1
Y
1
H
CD
ARG
75
A
CD
ARG
70
1
Y
1
H
NE
ARG
75
A
NE
ARG
70
1
Y
1
H
CZ
ARG
75
A
CZ
ARG
70
1
Y
1
H
NH1
ARG
75
A
NH1
ARG
70
1
Y
1
H
NH2
ARG
75
A
NH2
ARG
70
1
Y
A
1
H
TRP
147
A
TRP
148
1
Y
B
1
H
THR
147
A
THR
149
1
Y
C
1
H
ALA
147
A
ALA
150
1
Y
D
1
H
ASN
147
A
ASN
151
1
Y
E
1
H
VAL
147
A
VAL
152
1
Y
F
1
H
GLY
147
A
GLY
153
1
Y
G
1
H
LYS
147
A
LYS
154
1
Y
1
I
GLU
7
B
GLU
7
1
Y
1
I
GLU
8
B
GLU
8
1
Y
1
I
TYR
9
B
TYR
9
1
Y
1
I
LEU
10
B
LEU
10
1
Y
1
I
GLN
11
B
GLN
11
1
Y
1
H
H
ND2
O
ASN
HOH
143
2203
2.15
A
1
H
TYR
60
-153.07
84.65
G
1
H
ASN
60
-159.10
76.14
1
H
HIS
71
-134.04
-60.37
1
H
ILE
79
-129.01
-63.06
A
1
H
GLU
97
-117.39
-73.31
1
L
PHE
7
-129.01
-91.48
24.05
-0.01000
0.00000
-0.71000
-0.13000
0.00000
-0.12000
0.964
0.957
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. THE SIDE CHAIN OF ARG 75 HAS ALTERNATIVE CONFORMATIONS, ONE OF WHICH IS ON A DIAD AXIS. IT HAS NOT BEEN MODELLED.
0.199
0.180
0.181
1.30
71.25
4308
81614
5.000
98.2
1.577
0.034
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
FOURIER SYNTHESIS
0.048
0.049
0.80
0.80
1.20
PDB ENTRY 1OYT
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
1.30
71.25
397
2732
34
0
2301
0.012
0.022
2462
0.001
0.020
2229
1.603
1.985
3339
0.832
3.000
5197
6.066
5.000
294
33.054
23.363
113
11.166
15.000
435
13.204
15.000
20
0.115
0.200
350
0.007
0.020
2714
0.001
0.020
518
0.196
0.200
425
0.187
0.200
2324
0.179
0.200
1191
0.082
0.200
1430
0.142
0.200
283
0.041
0.200
2
0.320
0.200
28
0.141
0.200
23
0.797
1.500
1455
1.332
2.000
2355
1.957
3.000
1056
2.701
4.500
984
0.2990
0.2610
1.33
288
5678
20
1.300
20.000
2CF8
85919
-3.000
0.04000
1
17.8000
3.580
98.2
0.30000
1.30
1.37
4.200
1
3.08
95.9
refinement
REFMAC
5.2.0005
data reduction
XDS
data scaling
XDS
Complex of recombinant human thrombin with an inhibitor
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
7
N
N
7
N
N
7
N
N
H
ALA
55
A
ALA
41
HELX_P
H
CYS
58
A
CYS
44
5
1
4
H
PRO
60
A
PRO
48
HELX_P
H
ASP
60
A
ASP
51
5
2
4
B
E
H
THR
60
A
THR
55
HELX_P
H
ASN
62
A
ASN
57
5
3
3
I
H
ASP
125
A
ASP
122
HELX_P
H
LEU
130
A
LEU
130
1
4
9
H
GLU
164
A
GLU
169
HELX_P
H
SER
171
A
SER
176
1
5
8
H
LYS
185
A
LYS
191
HELX_P
H
GLY
186
A
GLY
195
5
6
5
C
H
LEU
234
A
LEU
246
HELX_P
H
PHE
245
A
PHE
257
1
7
12
L
PHE
7
C
PHE
9
HELX_P
L
SER
11
C
SER
13
5
8
5
L
THR
14
C
THR
18
HELX_P
L
TYR
14
C
TYR
26
1
9
9
B
J
disulf
2.030
H
CYS
42
A
SG
CYS
28
1_555
H
CYS
58
A
SG
CYS
44
1_555
disulf
2.081
H
CYS
122
A
SG
CYS
119
1_555
L
CYS
1
C
SG
CYS
3
1_555
disulf
2.032
H
CYS
168
A
SG
CYS
173
1_555
H
CYS
182
A
SG
CYS
187
1_555
disulf
2.093
H
CYS
191
A
SG
CYS
201
1_555
H
CYS
220
A
SG
CYS
231
1_555
covale
1.331
both
I
SIN
1
B
C1
SIN
1
1_555
I
PHE
2
B
N
PHE
2
1_555
metalc
2.642
H
LYS
169
A
O
LYS
174
1_555
H
CA
1249
F
CA
CA
1_555
metalc
2.647
H
THR
172
A
O
THR
177
1_555
H
CA
1249
F
CA
CA
1_555
metalc
2.664
A
H
PHE
204
A
O
PHE
215
4_546
H
CA
1249
F
CA
CA
1_555
metalc
2.275
A
H
ARG
221
A
O
ARG
233
1_555
H
NA
1248
E
NA
NA
1_555
metalc
2.281
H
LYS
224
A
O
LYS
236
1_555
H
NA
1248
E
NA
NA
1_555
metalc
2.763
H
NA
1248
E
NA
NA
1_555
H
HOH
2261
G
O
HOH
1_555
metalc
2.554
H
NA
1248
E
NA
NA
1_555
H
HOH
2304
G
O
HOH
1_555
metalc
2.476
H
NA
1248
E
NA
NA
1_555
H
HOH
2312
G
O
HOH
1_555
metalc
2.305
H
NA
1248
E
NA
NA
1_555
H
HOH
2313
G
O
HOH
1_555
metalc
2.661
H
CA
1249
F
CA
CA
1_555
H
HOH
2237
G
O
HOH
1_555
metalc
2.907
H
CA
1249
F
CA
CA
1_555
H
HOH
2245
G
O
HOH
1_555
metalc
2.601
H
CA
1249
F
CA
CA
1_555
H
HOH
2284
G
O
HOH
4_546
HYDROLASE/HYDROLASE INHIBITOR
HYDROLASE/INHIBITOR, ACUTE PHASE, BLOOD COAGULATION, CALCIUM-BINDING, GLYCOPROTEIN, HYDOLASE, SERINE PROTEASE, SERINE PROTEASE INHIBITOR COMPLEX, COMPLEX HYDROLASE-INHIBITOR, HYDROLASE-HYDROLASE INHIBITOR COMPLEX
H
SER
36
A
SER
22
A
1
H
PRO
37
A
PRO
23
-8.79
THRB_HUMAN
UNP
1
P00734
2CF8
PDB
2
2CF8
ITHH_HIRME
UNP
2
P28508
THRB_HUMAN
UNP
3
P00734
364
620
2CF8
16
245
P00734
H
1
1
257
1
1
2CF8
1
1
2CF8
I
2
1
1
56
65
2CF8
2
11
P28508
I
3
2
11
334
361
2CF8
1
14
P00734
B
L
L
4
1
28
7
7
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
H
SER
20
A
SER
5
H
ASP
21
A
ASP
6
H
GLN
156
A
GLN
161
H
PRO
161
A
PRO
166
H
LYS
135
A
LYS
135
H
GLY
140
A
GLY
140
H
PRO
198
A
PRO
208
H
LYS
202
A
LYS
212
H
TRP
207
A
TRP
219
H
TRP
215
A
TRP
227
H
GLY
226
A
GLY
238
H
HIS
230
A
HIS
242
H
MET
180
A
MET
185
H
ALA
183
A
ALA
188
H
GLN
30
A
GLN
15
H
ARG
35
A
ARG
20
H
GLU
39
A
GLU
25
H
LEU
46
A
LEU
32
H
TRP
51
A
TRP
37
H
THR
54
A
THR
40
H
ALA
104
A
ALA
101
H
LEU
108
A
LEU
105
H
LYS
81
A
LYS
77
H
ILE
90
A
ILE
86
H
LEU
64
A
LEU
59
H
ILE
68
A
ILE
63
H
GLN
30
A
GLN
15
H
ARG
35
A
ARG
20
H
LEU
60
A
LEU
46
H
TYR
60
A
TYR
47
A
H
LYS
60
A
LYS
52
H
ASN
60
A
ASN
53
F
G
BINDING SITE FOR RESIDUE ESH H 1246
H
ESH
1246
Software
13
BINDING SITE FOR RESIDUE NA H 1248
H
NA
1248
Software
6
BINDING SITE FOR RESIDUE CA H 1249
H
CA
1249
Software
6
BINDING SITE FOR CHAIN I OF HIRUDIN IIIA
Software
15
H
TYR
60
A
TYR
47
A
13
1_555
H
GLU
97
A
GLU
94
A
13
1_555
H
LEU
99
A
LEU
96
13
1_555
H
ASP
189
A
ASP
199
13
1_555
H
ALA
190
A
ALA
200
13
1_555
H
GLU
192
A
GLU
202
13
1_555
H
SER
214
A
SER
226
13
1_555
H
TRP
215
A
TRP
227
13
1_555
H
GLY
216
A
GLY
228
13
1_555
H
GLY
219
A
GLY
230
13
1_555
H
GLY
226
A
GLY
238
13
1_555
H
HOH
2315
G
HOH
13
1_555
H
HOH
2330
G
HOH
13
1_555
H
ARG
221
A
ARG
233
A
6
1_555
H
LYS
224
A
LYS
236
6
1_555
H
HOH
2261
G
HOH
6
1_555
H
HOH
2304
G
HOH
6
1_555
H
HOH
2312
G
HOH
6
1_555
H
HOH
2313
G
HOH
6
1_555
H
LYS
169
A
LYS
174
6
1_555
H
THR
172
A
THR
177
6
1_555
H
PHE
204
A
PHE
215
A
6
4_546
H
HOH
2237
G
HOH
6
1_555
H
HOH
2245
G
HOH
6
1_555
H
HOH
2284
G
HOH
6
4_546
H
PHE
34
A
PHE
19
15
1_555
H
GLN
38
A
GLN
24
15
1_555
H
LEU
65
A
LEU
60
15
1_555
H
ARG
67
A
ARG
62
15
1_555
H
ARG
73
A
ARG
68
15
1_555
H
THR
74
A
THR
69
15
1_555
H
ARG
75
A
ARG
70
15
1_555
H
TYR
76
A
TYR
71
15
1_555
H
ILE
82
A
ILE
78
15
1_555
H
HOH
2109
G
HOH
15
2_555
H
HOH
2114
G
HOH
15
1_555
I
HOH
2001
H
HOH
15
1_555
I
HOH
2002
H
HOH
15
1_555
I
HOH
2003
H
HOH
15
1_555
I
HOH
2004
H
HOH
15
1_555
5
C 1 2 1