0.014071 0.000000 0.002544 0.000000 0.013984 0.000000 0.000000 0.000000 0.014036 0.00000 0.00000 0.00000 Schweizer, E. Hoffmann-Roeder, A. Olsen, J.A. Obst-Sander, U. Wagner, B. Kansy, M. Banner, D.W. Diederich, F. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 100.25 90.00 71.070 71.510 72.400 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Ca 2 40.078 CALCIUM ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C26 H31 Cl N4 O 451.004 4- [(1R,3AS,4R,8AS,8BR)- 2- (4-CHLOROBENZYL)- 1- ISOPROPYL- 3- OXODECAHYDROPYRROLO[3,4- A]PYRROLIZIN- 4- YL]BENZENECARBOXIMIDAMIDE non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Na 1 22.990 SODIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H6 O4 118.088 SUCCINIC ACID non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CA N 75 N N N 76 R C N 77 N C N 78 N O N 79 N C N 80 N S N 81 N O N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N N N 90 N C N 91 N N Y 92 N C Y 93 N C Y 94 N C Y 95 N C Y 96 N C Y 97 N C N 98 R C N 99 N N N 100 N C N 101 N C N 102 N C N 103 S C N 104 R C N 105 R C N 106 N N N 107 N C N 108 N O N 109 S C N 110 N C Y 111 N C Y 112 N C Y 113 N C Y 114 N C Y 115 N C Y 116 N C N 117 N C N 118 N C N 119 N C N 120 N CL N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N N N 153 S C N 154 N C N 155 N O N 156 N C N 157 N C N 158 N C N 159 N O N 160 N N N 161 N O N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N N N 173 S C N 174 N C N 175 N O N 176 N C N 177 N C N 178 N C N 179 N O N 180 N O N 181 N O N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N N N 192 N C N 193 N C N 194 N O N 195 N O N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N N N 202 S C N 203 N C N 204 N O N 205 N C Y 206 N C Y 207 N N Y 208 N C Y 209 N C Y 210 N N N 211 N O N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N O N 223 N H N 224 N H N 225 N N N 226 S C N 227 N C N 228 N O N 229 S C N 230 N C N 231 N C N 232 N C N 233 N O N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N N N 248 S C N 249 N C N 250 N O N 251 N C N 252 N C N 253 N C N 254 N C N 255 N O N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N N N 270 S C N 271 N C N 272 N O N 273 N C N 274 N C N 275 N C N 276 N C N 277 N N N 278 N O N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N N N 295 S C N 296 N C N 297 N O N 298 N C N 299 N C N 300 N S N 301 N C N 302 N O N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N NA N 315 N N N 316 S C N 317 N C N 318 N O N 319 N C Y 320 N C Y 321 N C Y 322 N C Y 323 N C Y 324 N C Y 325 N C N 326 N O N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N N N 339 S C N 340 N C N 341 N O N 342 N C N 343 N C N 344 N C N 345 N O N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N N N 356 S C N 357 N C N 358 N O N 359 N C N 360 N O N 361 N O N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N C N 370 N O N 371 N O N 372 N C N 373 N C N 374 N C N 375 N O N 376 N O N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N N N 384 S C N 385 N C N 386 N O N 387 R C N 388 N O N 389 N C N 390 N O N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N N N 401 S C N 402 N C N 403 N O N 404 N C Y 405 N C Y 406 N C Y 407 N C Y 408 N N Y 409 N C Y 410 N C Y 411 N C Y 412 N C Y 413 N C N 414 N O N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N N N 428 S C N 429 N C N 430 N O N 431 N C Y 432 N C Y 433 N C Y 434 N C Y 435 N C Y 436 N C Y 437 N C N 438 N O N 439 N O N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N N N 452 S C N 453 N C N 454 N O N 455 N C N 456 N C N 457 N C N 458 N O N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 E doub N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing Y 89 N doub Y 90 N sing Y 91 N sing N 92 N sing Y 93 N doub N 94 N sing Y 95 N sing N 96 N sing Y 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N doub N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing Y 130 N doub Y 131 N sing Y 132 N sing N 133 N sing Y 134 N doub N 135 N sing Y 136 N sing N 137 N sing Y 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N doub N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N doub N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N doub N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N doub N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N doub N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N doub N 203 N sing N 204 N sing N 205 N sing N 206 N sing Y 207 N sing Y 208 N doub Y 209 N doub N 210 N sing Y 211 N sing N 212 N sing Y 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N doub N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N doub N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N doub N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N doub N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N doub N 311 N sing N 312 N sing N 313 N sing N 314 N sing Y 315 N doub Y 316 N sing Y 317 N sing N 318 N sing Y 319 N doub N 320 N sing Y 321 N doub N 322 N sing Y 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N doub N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N doub N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N doub N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N doub N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N doub N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N doub N 393 N sing N 394 N sing N 395 N sing N 396 N sing Y 397 N doub Y 398 N sing Y 399 N sing N 400 N sing Y 401 N doub Y 402 N sing Y 403 N sing N 404 N sing Y 405 N sing Y 406 N doub N 407 N sing Y 408 N doub N 409 N sing Y 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N doub N 421 N sing N 422 N sing N 423 N sing N 424 N sing Y 425 N doub Y 426 N sing Y 427 N sing N 428 N sing Y 429 N doub N 430 N sing Y 431 N doub N 432 N sing Y 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N doub N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing UK Org.Biomol.Chem. 1477-0520 4 2364 10.1039/B602585D 16763681 Multipolar Interactions in the D Pocket of Thrombin: Large Differences between Tricyclic Imide and Lactam Inhibitors. 2006 10.2210/pdb2cf8/pdb pdb_00002cf8 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 CCD 2005-10-28 MARRESEARCH SINGLE WAVELENGTH M x-ray 1 0.97001 1.0 X10SA SLS 0.97001 SYNCHROTRON SLS BEAMLINE X10SA 29594.055 THROMBIN HEAVY CHAIN 3.4.21.5 CATALYTIC, RESIDUES 364-620 1 man polymer 1396.450 HIRUDIN IIIA C-TERMINUS, RESIDUES 55-65 1 syn polymer 3303.715 THROMBIN LIGHT CHAIN 3.4.21.5 LIGHT CHAIN, RESIDUES 334-361 1 man polymer 451.004 4- [(1R,3AS,4R,8AS,8BR)- 2- (4-CHLOROBENZYL)- 1- ISOPROPYL- 3- OXODECAHYDROPYRROLO[3,4- A]PYRROLIZIN- 4- YL]BENZENECARBOXIMIDAMIDE 1 syn non-polymer 22.990 SODIUM ION 1 syn non-polymer 40.078 CALCIUM ION 1 syn non-polymer 18.015 water 397 nat water no no IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQF IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQF H polypeptide(L) no yes (SIN)FEEIPEEYLQ XFEEIPEEYLQ I polypeptide(L) no no ADCGLRPLFEKKSLEDKTERELLESYID ADCGLRPLFEKKSLEDKTERELLESYID L polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n HUMAN sample 9606 HOMO SAPIENS OVARY 10029 CRICETULUS GRISEUS HUMAN sample 9606 HOMO SAPIENS OVARY 10029 CRICETULUS GRISEUS 1 2.76 43.00 7.40 PH 7.40 chem_comp_atom chem_comp_bond database_2 pdbx_database_status pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_conn_type struct_site repository Initial release Advisory Atomic model Database references Derived calculations Non-polymer description Structure summary Version format compliance Other Derived calculations Other Other Structure summary Data collection Database references Derived calculations Other Refinement description 1 0 2006-06-14 1 1 2011-07-13 1 2 2012-12-12 1 3 2013-08-07 1 4 2013-10-23 1 5 2017-03-29 1 6 2023-12-13 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_sf _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_symmetry _struct_conn_type.id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id THROMBIN-METHOXY2 SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS "HB" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY A 6-STRANDED BARREL THIS IS REPRESENTED BY A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. PDBE Y PDBE 2006-02-17 REL REL 1 H O HOH 2016 5.99 1 H O HOH 2026 7.13 1 H O HOH 2033 6.06 1 L O HOH 2061 6.45 1 L O HOH 2062 6.94 ESH 4- [(1R,3AS,4R,8AS,8BR)- 2- (4-CHLOROBENZYL)- 1- ISOPROPYL- 3- OXODECAHYDROPYRROLO[3,4- A]PYRROLIZIN- 4- YL]BENZENECARBOXIMIDAMIDE NA SODIUM ION CA CALCIUM ION HOH water 6421 MEDICINAL LEECH HIRUDO MEDICINALIS sample 1OYT PDB ENTRY 1OYT PDB experimental model Anticoagulant, Antithrombotic N-terminal Asp des-amino Hirudin-3A' Oligopeptide ESH 1246 4 ESH ESH 1246 H NA 1248 5 NA NA 1248 H CA 1249 6 CA CA 1249 H HOH 2001 7 HOH HOH 2001 H HOH 2002 7 HOH HOH 2002 H HOH 2003 7 HOH HOH 2003 H HOH 2004 7 HOH HOH 2004 H HOH 2005 7 HOH HOH 2005 H HOH 2006 7 HOH HOH 2006 H HOH 2007 7 HOH HOH 2007 H HOH 2008 7 HOH HOH 2008 H HOH 2009 7 HOH HOH 2009 H HOH 2010 7 HOH HOH 2010 H HOH 2011 7 HOH HOH 2011 H HOH 2012 7 HOH HOH 2012 H HOH 2013 7 HOH HOH 2013 H HOH 2014 7 HOH HOH 2014 H HOH 2015 7 HOH HOH 2015 H HOH 2016 7 HOH HOH 2016 H HOH 2017 7 HOH HOH 2017 H HOH 2018 7 HOH HOH 2018 H HOH 2019 7 HOH HOH 2019 H HOH 2020 7 HOH HOH 2020 H HOH 2021 7 HOH HOH 2021 H HOH 2022 7 HOH HOH 2022 H HOH 2023 7 HOH HOH 2023 H HOH 2024 7 HOH HOH 2024 H HOH 2025 7 HOH HOH 2025 H HOH 2026 7 HOH HOH 2026 H HOH 2027 7 HOH HOH 2027 H HOH 2028 7 HOH HOH 2028 H HOH 2029 7 HOH HOH 2029 H HOH 2030 7 HOH HOH 2030 H HOH 2031 7 HOH HOH 2031 H HOH 2032 7 HOH HOH 2032 H HOH 2033 7 HOH HOH 2033 H HOH 2034 7 HOH HOH 2034 H HOH 2035 7 HOH HOH 2035 H HOH 2036 7 HOH HOH 2036 H HOH 2037 7 HOH HOH 2037 H HOH 2038 7 HOH HOH 2038 H HOH 2039 7 HOH HOH 2039 H HOH 2040 7 HOH HOH 2040 H HOH 2041 7 HOH HOH 2041 H HOH 2042 7 HOH HOH 2042 H HOH 2043 7 HOH HOH 2043 H HOH 2044 7 HOH HOH 2044 H HOH 2045 7 HOH HOH 2045 H HOH 2046 7 HOH HOH 2046 H HOH 2047 7 HOH HOH 2047 H HOH 2048 7 HOH HOH 2048 H HOH 2049 7 HOH HOH 2049 H HOH 2050 7 HOH HOH 2050 H HOH 2051 7 HOH HOH 2051 H HOH 2052 7 HOH HOH 2052 H HOH 2053 7 HOH HOH 2053 H HOH 2054 7 HOH HOH 2054 H HOH 2055 7 HOH HOH 2055 H HOH 2056 7 HOH HOH 2056 H HOH 2057 7 HOH HOH 2057 H HOH 2058 7 HOH HOH 2058 H HOH 2059 7 HOH HOH 2059 H HOH 2060 7 HOH HOH 2060 H HOH 2061 7 HOH HOH 2061 H HOH 2062 7 HOH HOH 2062 H HOH 2063 7 HOH HOH 2063 H HOH 2064 7 HOH HOH 2064 H HOH 2065 7 HOH HOH 2065 H HOH 2066 7 HOH HOH 2066 H HOH 2067 7 HOH HOH 2067 H HOH 2068 7 HOH HOH 2068 H HOH 2069 7 HOH HOH 2069 H HOH 2070 7 HOH HOH 2070 H HOH 2071 7 HOH HOH 2071 H HOH 2072 7 HOH HOH 2072 H HOH 2073 7 HOH HOH 2073 H HOH 2074 7 HOH HOH 2074 H HOH 2075 7 HOH HOH 2075 H HOH 2076 7 HOH HOH 2076 H HOH 2077 7 HOH HOH 2077 H HOH 2078 7 HOH HOH 2078 H HOH 2079 7 HOH HOH 2079 H HOH 2080 7 HOH HOH 2080 H HOH 2081 7 HOH HOH 2081 H HOH 2082 7 HOH HOH 2082 H HOH 2083 7 HOH HOH 2083 H HOH 2084 7 HOH HOH 2084 H HOH 2085 7 HOH HOH 2085 H HOH 2086 7 HOH HOH 2086 H HOH 2087 7 HOH HOH 2087 H HOH 2088 7 HOH HOH 2088 H HOH 2089 7 HOH HOH 2089 H HOH 2090 7 HOH HOH 2090 H HOH 2091 7 HOH HOH 2091 H HOH 2092 7 HOH HOH 2092 H HOH 2093 7 HOH HOH 2093 H HOH 2094 7 HOH HOH 2094 H HOH 2095 7 HOH HOH 2095 H HOH 2096 7 HOH HOH 2096 H HOH 2097 7 HOH HOH 2097 H HOH 2098 7 HOH HOH 2098 H HOH 2099 7 HOH HOH 2099 H HOH 2100 7 HOH HOH 2100 H HOH 2101 7 HOH HOH 2101 H HOH 2102 7 HOH HOH 2102 H HOH 2103 7 HOH HOH 2103 H HOH 2104 7 HOH HOH 2104 H HOH 2105 7 HOH HOH 2105 H HOH 2106 7 HOH HOH 2106 H HOH 2107 7 HOH HOH 2107 H HOH 2108 7 HOH HOH 2108 H HOH 2109 7 HOH HOH 2109 H HOH 2110 7 HOH HOH 2110 H HOH 2111 7 HOH HOH 2111 H HOH 2112 7 HOH HOH 2112 H HOH 2113 7 HOH HOH 2113 H HOH 2114 7 HOH HOH 2114 H HOH 2115 7 HOH HOH 2115 H HOH 2116 7 HOH HOH 2116 H HOH 2117 7 HOH HOH 2117 H HOH 2118 7 HOH HOH 2118 H HOH 2119 7 HOH HOH 2119 H HOH 2120 7 HOH HOH 2120 H HOH 2121 7 HOH HOH 2121 H HOH 2122 7 HOH HOH 2122 H HOH 2123 7 HOH HOH 2123 H HOH 2124 7 HOH HOH 2124 H HOH 2125 7 HOH HOH 2125 H HOH 2126 7 HOH HOH 2126 H HOH 2127 7 HOH HOH 2127 H HOH 2128 7 HOH HOH 2128 H HOH 2129 7 HOH HOH 2129 H HOH 2130 7 HOH HOH 2130 H HOH 2131 7 HOH HOH 2131 H HOH 2132 7 HOH HOH 2132 H HOH 2133 7 HOH HOH 2133 H HOH 2134 7 HOH HOH 2134 H HOH 2135 7 HOH HOH 2135 H HOH 2136 7 HOH HOH 2136 H HOH 2137 7 HOH HOH 2137 H HOH 2138 7 HOH HOH 2138 H HOH 2139 7 HOH HOH 2139 H HOH 2140 7 HOH HOH 2140 H HOH 2141 7 HOH HOH 2141 H HOH 2142 7 HOH HOH 2142 H HOH 2143 7 HOH HOH 2143 H HOH 2144 7 HOH HOH 2144 H HOH 2145 7 HOH HOH 2145 H HOH 2146 7 HOH HOH 2146 H HOH 2147 7 HOH HOH 2147 H HOH 2148 7 HOH HOH 2148 H HOH 2149 7 HOH HOH 2149 H HOH 2150 7 HOH HOH 2150 H HOH 2151 7 HOH HOH 2151 H HOH 2152 7 HOH HOH 2152 H HOH 2153 7 HOH HOH 2153 H HOH 2154 7 HOH HOH 2154 H HOH 2155 7 HOH HOH 2155 H HOH 2156 7 HOH HOH 2156 H HOH 2157 7 HOH HOH 2157 H HOH 2158 7 HOH HOH 2158 H HOH 2159 7 HOH HOH 2159 H HOH 2160 7 HOH HOH 2160 H HOH 2161 7 HOH HOH 2161 H HOH 2162 7 HOH HOH 2162 H HOH 2163 7 HOH HOH 2163 H HOH 2164 7 HOH HOH 2164 H HOH 2165 7 HOH HOH 2165 H HOH 2166 7 HOH HOH 2166 H HOH 2167 7 HOH HOH 2167 H HOH 2168 7 HOH HOH 2168 H HOH 2169 7 HOH HOH 2169 H HOH 2170 7 HOH HOH 2170 H HOH 2171 7 HOH HOH 2171 H HOH 2172 7 HOH HOH 2172 H HOH 2173 7 HOH HOH 2173 H HOH 2174 7 HOH HOH 2174 H HOH 2175 7 HOH HOH 2175 H HOH 2176 7 HOH HOH 2176 H HOH 2177 7 HOH HOH 2177 H HOH 2178 7 HOH HOH 2178 H HOH 2179 7 HOH HOH 2179 H HOH 2180 7 HOH HOH 2180 H HOH 2181 7 HOH HOH 2181 H HOH 2182 7 HOH HOH 2182 H HOH 2183 7 HOH HOH 2183 H HOH 2184 7 HOH HOH 2184 H HOH 2185 7 HOH HOH 2185 H HOH 2186 7 HOH HOH 2186 H HOH 2187 7 HOH HOH 2187 H HOH 2188 7 HOH HOH 2188 H HOH 2189 7 HOH HOH 2189 H HOH 2190 7 HOH HOH 2190 H HOH 2191 7 HOH HOH 2191 H HOH 2192 7 HOH HOH 2192 H HOH 2193 7 HOH HOH 2193 H HOH 2194 7 HOH HOH 2194 H HOH 2195 7 HOH HOH 2195 H HOH 2196 7 HOH HOH 2196 H HOH 2197 7 HOH HOH 2197 H HOH 2198 7 HOH HOH 2198 H HOH 2199 7 HOH HOH 2199 H HOH 2200 7 HOH HOH 2200 H HOH 2201 7 HOH HOH 2201 H HOH 2202 7 HOH HOH 2202 H HOH 2203 7 HOH HOH 2203 H HOH 2204 7 HOH HOH 2204 H HOH 2205 7 HOH HOH 2205 H HOH 2206 7 HOH HOH 2206 H HOH 2207 7 HOH HOH 2207 H HOH 2208 7 HOH HOH 2208 H HOH 2209 7 HOH HOH 2209 H HOH 2210 7 HOH HOH 2210 H HOH 2211 7 HOH HOH 2211 H HOH 2212 7 HOH HOH 2212 H HOH 2213 7 HOH HOH 2213 H HOH 2214 7 HOH HOH 2214 H HOH 2215 7 HOH HOH 2215 H HOH 2216 7 HOH HOH 2216 H HOH 2217 7 HOH HOH 2217 H HOH 2218 7 HOH HOH 2218 H HOH 2219 7 HOH HOH 2219 H HOH 2220 7 HOH HOH 2220 H HOH 2221 7 HOH HOH 2221 H HOH 2222 7 HOH HOH 2222 H HOH 2223 7 HOH HOH 2223 H HOH 2224 7 HOH HOH 2224 H HOH 2225 7 HOH HOH 2225 H HOH 2226 7 HOH HOH 2226 H HOH 2227 7 HOH HOH 2227 H HOH 2228 7 HOH HOH 2228 H HOH 2229 7 HOH HOH 2229 H HOH 2230 7 HOH HOH 2230 H HOH 2231 7 HOH HOH 2231 H HOH 2232 7 HOH HOH 2232 H HOH 2233 7 HOH HOH 2233 H HOH 2234 7 HOH HOH 2234 H HOH 2235 7 HOH HOH 2235 H HOH 2236 7 HOH HOH 2236 H HOH 2237 7 HOH HOH 2237 H HOH 2238 7 HOH HOH 2238 H HOH 2239 7 HOH HOH 2239 H HOH 2240 7 HOH HOH 2240 H HOH 2241 7 HOH HOH 2241 H HOH 2242 7 HOH HOH 2242 H HOH 2243 7 HOH HOH 2243 H HOH 2244 7 HOH HOH 2244 H HOH 2245 7 HOH HOH 2245 H HOH 2246 7 HOH HOH 2246 H HOH 2247 7 HOH HOH 2247 H HOH 2248 7 HOH HOH 2248 H HOH 2249 7 HOH HOH 2249 H HOH 2250 7 HOH HOH 2250 H HOH 2251 7 HOH HOH 2251 H HOH 2252 7 HOH HOH 2252 H HOH 2253 7 HOH HOH 2253 H HOH 2254 7 HOH HOH 2254 H HOH 2255 7 HOH HOH 2255 H HOH 2256 7 HOH HOH 2256 H HOH 2257 7 HOH HOH 2257 H HOH 2258 7 HOH HOH 2258 H HOH 2259 7 HOH HOH 2259 H HOH 2260 7 HOH HOH 2260 H HOH 2261 7 HOH HOH 2261 H HOH 2262 7 HOH HOH 2262 H HOH 2263 7 HOH HOH 2263 H HOH 2264 7 HOH HOH 2264 H HOH 2265 7 HOH HOH 2265 H HOH 2266 7 HOH HOH 2266 H HOH 2267 7 HOH HOH 2267 H HOH 2268 7 HOH HOH 2268 H HOH 2269 7 HOH HOH 2269 H HOH 2270 7 HOH HOH 2270 H HOH 2271 7 HOH HOH 2271 H HOH 2272 7 HOH HOH 2272 H HOH 2273 7 HOH HOH 2273 H HOH 2274 7 HOH HOH 2274 H HOH 2275 7 HOH HOH 2275 H HOH 2276 7 HOH HOH 2276 H HOH 2277 7 HOH HOH 2277 H HOH 2278 7 HOH HOH 2278 H HOH 2279 7 HOH HOH 2279 H HOH 2280 7 HOH HOH 2280 H HOH 2281 7 HOH HOH 2281 H HOH 2282 7 HOH HOH 2282 H HOH 2283 7 HOH HOH 2283 H HOH 2284 7 HOH HOH 2284 H HOH 2285 7 HOH HOH 2285 H HOH 2286 7 HOH HOH 2286 H HOH 2287 7 HOH HOH 2287 H HOH 2288 7 HOH HOH 2288 H HOH 2289 7 HOH HOH 2289 H HOH 2290 7 HOH HOH 2290 H HOH 2291 7 HOH HOH 2291 H HOH 2292 7 HOH HOH 2292 H HOH 2293 7 HOH HOH 2293 H HOH 2294 7 HOH HOH 2294 H HOH 2295 7 HOH HOH 2295 H HOH 2296 7 HOH HOH 2296 H HOH 2297 7 HOH HOH 2297 H HOH 2298 7 HOH HOH 2298 H HOH 2299 7 HOH HOH 2299 H HOH 2300 7 HOH HOH 2300 H HOH 2301 7 HOH HOH 2301 H HOH 2302 7 HOH HOH 2302 H HOH 2303 7 HOH HOH 2303 H HOH 2304 7 HOH HOH 2304 H HOH 2305 7 HOH HOH 2305 H HOH 2306 7 HOH HOH 2306 H HOH 2307 7 HOH HOH 2307 H HOH 2308 7 HOH HOH 2308 H HOH 2309 7 HOH HOH 2309 H HOH 2310 7 HOH HOH 2310 H HOH 2311 7 HOH HOH 2311 H HOH 2312 7 HOH HOH 2312 H HOH 2313 7 HOH HOH 2313 H HOH 2314 7 HOH HOH 2314 H HOH 2315 7 HOH HOH 2315 H HOH 2316 7 HOH HOH 2316 H HOH 2317 7 HOH HOH 2317 H HOH 2318 7 HOH HOH 2318 H HOH 2319 7 HOH HOH 2319 H HOH 2320 7 HOH HOH 2320 H HOH 2321 7 HOH HOH 2321 H HOH 2322 7 HOH HOH 2322 H HOH 2323 7 HOH HOH 2323 H HOH 2324 7 HOH HOH 2324 H HOH 2325 7 HOH HOH 2325 H HOH 2326 7 HOH HOH 2326 H HOH 2327 7 HOH HOH 2327 H HOH 2328 7 HOH HOH 2328 H HOH 2329 7 HOH HOH 2329 H HOH 2330 7 HOH HOH 2330 H HOH 2001 7 HOH HOH 2001 I HOH 2002 7 HOH HOH 2002 I HOH 2003 7 HOH HOH 2003 I HOH 2004 7 HOH HOH 2004 I HOH 2001 7 HOH HOH 2001 L HOH 2002 7 HOH HOH 2002 L HOH 2003 7 HOH HOH 2003 L HOH 2004 7 HOH HOH 2004 L HOH 2005 7 HOH HOH 2005 L HOH 2006 7 HOH HOH 2006 L HOH 2007 7 HOH HOH 2007 L HOH 2008 7 HOH HOH 2008 L HOH 2009 7 HOH HOH 2009 L HOH 2010 7 HOH HOH 2010 L HOH 2011 7 HOH HOH 2011 L HOH 2012 7 HOH HOH 2012 L HOH 2013 7 HOH HOH 2013 L HOH 2014 7 HOH HOH 2014 L HOH 2015 7 HOH HOH 2015 L HOH 2016 7 HOH HOH 2016 L HOH 2017 7 HOH HOH 2017 L HOH 2018 7 HOH HOH 2018 L HOH 2019 7 HOH HOH 2019 L HOH 2020 7 HOH HOH 2020 L HOH 2021 7 HOH HOH 2021 L HOH 2022 7 HOH HOH 2022 L HOH 2023 7 HOH HOH 2023 L HOH 2024 7 HOH HOH 2024 L HOH 2025 7 HOH HOH 2025 L HOH 2026 7 HOH HOH 2026 L HOH 2027 7 HOH HOH 2027 L HOH 2028 7 HOH HOH 2028 L HOH 2029 7 HOH HOH 2029 L HOH 2030 7 HOH HOH 2030 L HOH 2031 7 HOH HOH 2031 L HOH 2032 7 HOH HOH 2032 L HOH 2033 7 HOH HOH 2033 L HOH 2034 7 HOH HOH 2034 L HOH 2035 7 HOH HOH 2035 L HOH 2036 7 HOH HOH 2036 L HOH 2037 7 HOH HOH 2037 L HOH 2038 7 HOH HOH 2038 L HOH 2039 7 HOH HOH 2039 L HOH 2040 7 HOH HOH 2040 L HOH 2041 7 HOH HOH 2041 L HOH 2042 7 HOH HOH 2042 L HOH 2043 7 HOH HOH 2043 L HOH 2044 7 HOH HOH 2044 L HOH 2045 7 HOH HOH 2045 L HOH 2046 7 HOH HOH 2046 L HOH 2047 7 HOH HOH 2047 L HOH 2048 7 HOH HOH 2048 L HOH 2049 7 HOH HOH 2049 L HOH 2050 7 HOH HOH 2050 L HOH 2051 7 HOH HOH 2051 L HOH 2052 7 HOH HOH 2052 L HOH 2053 7 HOH HOH 2053 L HOH 2054 7 HOH HOH 2054 L HOH 2055 7 HOH HOH 2055 L HOH 2056 7 HOH HOH 2056 L HOH 2057 7 HOH HOH 2057 L HOH 2058 7 HOH HOH 2058 L HOH 2059 7 HOH HOH 2059 L HOH 2060 7 HOH HOH 2060 L HOH 2061 7 HOH HOH 2061 L HOH 2062 7 HOH HOH 2062 L HOH 2063 7 HOH HOH 2063 L ILE 16 n 1 ILE 16 H VAL 17 n 2 VAL 17 H GLU 18 n 3 GLU 18 H GLY 19 n 4 GLY 19 H SER 20 n 5 SER 20 H ASP 21 n 6 ASP 21 H ALA 22 n 7 ALA 22 H GLU 23 n 8 GLU 23 H ILE 24 n 9 ILE 24 H GLY 25 n 10 GLY 25 H MET 26 n 11 MET 26 H SER 27 n 12 SER 27 H PRO 28 n 13 PRO 28 H TRP 29 n 14 TRP 29 H GLN 30 n 15 GLN 30 H VAL 31 n 16 VAL 31 H MET 32 n 17 MET 32 H LEU 33 n 18 LEU 33 H PHE 34 n 19 PHE 34 H ARG 35 n 20 ARG 35 H LYS 36 n 21 LYS 36 H SER 36 n 22 A SER 36 H PRO 37 n 23 PRO 37 H GLN 38 n 24 GLN 38 H GLU 39 n 25 GLU 39 H LEU 40 n 26 LEU 40 H LEU 41 n 27 LEU 41 H CYS 42 n 28 CYS 42 H GLY 43 n 29 GLY 43 H ALA 44 n 30 ALA 44 H SER 45 n 31 SER 45 H LEU 46 n 32 LEU 46 H ILE 47 n 33 ILE 47 H SER 48 n 34 SER 48 H ASP 49 n 35 ASP 49 H ARG 50 n 36 ARG 50 H TRP 51 n 37 TRP 51 H VAL 52 n 38 VAL 52 H LEU 53 n 39 LEU 53 H THR 54 n 40 THR 54 H ALA 55 n 41 ALA 55 H ALA 56 n 42 ALA 56 H HIS 57 n 43 HIS 57 H CYS 58 n 44 CYS 58 H LEU 59 n 45 LEU 59 H LEU 60 n 46 LEU 60 H TYR 60 n 47 A TYR 60 H PRO 60 n 48 B PRO 60 H PRO 60 n 49 C PRO 60 H TRP 60 n 50 D TRP 60 H ASP 60 n 51 E ASP 60 H LYS 60 n 52 F LYS 60 H ASN 60 n 53 G ASN 60 H PHE 60 n 54 H PHE 60 H THR 60 n 55 I THR 60 H GLU 61 n 56 GLU 61 H ASN 62 n 57 ASN 62 H ASP 63 n 58 ASP 63 H LEU 64 n 59 LEU 64 H LEU 65 n 60 LEU 65 H VAL 66 n 61 VAL 66 H ARG 67 n 62 ARG 67 H ILE 68 n 63 ILE 68 H GLY 69 n 64 GLY 69 H LYS 70 n 65 LYS 70 H HIS 71 n 66 HIS 71 H SER 72 n 67 SER 72 H ARG 73 n 68 ARG 73 H THR 74 n 69 THR 74 H ARG 75 n 70 ARG 75 H TYR 76 n 71 TYR 76 H GLU 77 n 72 GLU 77 H ARG 77 n 73 A ARG 77 H ASN 78 n 74 ASN 78 H ILE 79 n 75 ILE 79 H GLU 80 n 76 GLU 80 H LYS 81 n 77 LYS 81 H ILE 82 n 78 ILE 82 H SER 83 n 79 SER 83 H MET 84 n 80 MET 84 H LEU 85 n 81 LEU 85 H GLU 86 n 82 GLU 86 H LYS 87 n 83 LYS 87 H ILE 88 n 84 ILE 88 H TYR 89 n 85 TYR 89 H ILE 90 n 86 ILE 90 H HIS 91 n 87 HIS 91 H PRO 92 n 88 PRO 92 H ARG 93 n 89 ARG 93 H TYR 94 n 90 TYR 94 H ASN 95 n 91 ASN 95 H TRP 96 n 92 TRP 96 H ARG 97 n 93 ARG 97 H GLU 97 n 94 A GLU 97 H ASN 98 n 95 ASN 98 H LEU 99 n 96 LEU 99 H ASP 100 n 97 ASP 100 H ARG 101 n 98 ARG 101 H ASP 102 n 99 ASP 102 H ILE 103 n 100 ILE 103 H ALA 104 n 101 ALA 104 H LEU 105 n 102 LEU 105 H MET 106 n 103 MET 106 H LYS 107 n 104 LYS 107 H LEU 108 n 105 LEU 108 H LYS 109 n 106 LYS 109 H LYS 110 n 107 LYS 110 H PRO 111 n 108 PRO 111 H VAL 112 n 109 VAL 112 H ALA 113 n 110 ALA 113 H PHE 114 n 111 PHE 114 H SER 115 n 112 SER 115 H ASP 116 n 113 ASP 116 H TYR 117 n 114 TYR 117 H ILE 118 n 115 ILE 118 H HIS 119 n 116 HIS 119 H PRO 120 n 117 PRO 120 H VAL 121 n 118 VAL 121 H CYS 122 n 119 CYS 122 H LEU 123 n 120 LEU 123 H PRO 124 n 121 PRO 124 H ASP 125 n 122 ASP 125 H ARG 126 n 123 ARG 126 H GLU 127 n 124 GLU 127 H THR 128 n 125 THR 128 H ALA 129 n 126 ALA 129 H ALA 129 n 127 A ALA 129 H SER 129 n 128 B SER 129 H LEU 129 n 129 C LEU 129 H LEU 130 n 130 LEU 130 H GLN 131 n 131 GLN 131 H ALA 132 n 132 ALA 132 H GLY 133 n 133 GLY 133 H TYR 134 n 134 TYR 134 H LYS 135 n 135 LYS 135 H GLY 136 n 136 GLY 136 H ARG 137 n 137 ARG 137 H VAL 138 n 138 VAL 138 H THR 139 n 139 THR 139 H GLY 140 n 140 GLY 140 H TRP 141 n 141 TRP 141 H GLY 142 n 142 GLY 142 H ASN 143 n 143 ASN 143 H LEU 144 n 144 LEU 144 H LYS 145 n 145 LYS 145 H GLU 146 n 146 GLU 146 H THR 147 n 147 THR 147 H n 148 A 147 H n 149 B 147 H n 150 C 147 H n 151 D 147 H n 152 E 147 H n 153 F 147 H n 154 G 147 H GLY 150 n 155 GLY 150 H GLN 151 n 156 GLN 151 H PRO 152 n 157 PRO 152 H SER 153 n 158 SER 153 H VAL 154 n 159 VAL 154 H LEU 155 n 160 LEU 155 H GLN 156 n 161 GLN 156 H VAL 157 n 162 VAL 157 H VAL 158 n 163 VAL 158 H ASN 159 n 164 ASN 159 H LEU 160 n 165 LEU 160 H PRO 161 n 166 PRO 161 H ILE 162 n 167 ILE 162 H VAL 163 n 168 VAL 163 H GLU 164 n 169 GLU 164 H ARG 165 n 170 ARG 165 H PRO 166 n 171 PRO 166 H VAL 167 n 172 VAL 167 H CYS 168 n 173 CYS 168 H LYS 169 n 174 LYS 169 H ASP 170 n 175 ASP 170 H SER 171 n 176 SER 171 H THR 172 n 177 THR 172 H ARG 173 n 178 ARG 173 H ILE 174 n 179 ILE 174 H ARG 175 n 180 ARG 175 H ILE 176 n 181 ILE 176 H THR 177 n 182 THR 177 H ASP 178 n 183 ASP 178 H ASN 179 n 184 ASN 179 H MET 180 n 185 MET 180 H PHE 181 n 186 PHE 181 H CYS 182 n 187 CYS 182 H ALA 183 n 188 ALA 183 H GLY 184 n 189 GLY 184 H TYR 184 n 190 A TYR 184 H LYS 185 n 191 LYS 185 H PRO 186 n 192 PRO 186 H ASP 186 n 193 A ASP 186 H GLU 186 n 194 B GLU 186 H GLY 186 n 195 C GLY 186 H LYS 186 n 196 D LYS 186 H ARG 187 n 197 ARG 187 H GLY 188 n 198 GLY 188 H ASP 189 n 199 ASP 189 H ALA 190 n 200 ALA 190 H CYS 191 n 201 CYS 191 H GLU 192 n 202 GLU 192 H GLY 193 n 203 GLY 193 H ASP 194 n 204 ASP 194 H SER 195 n 205 SER 195 H GLY 196 n 206 GLY 196 H GLY 197 n 207 GLY 197 H PRO 198 n 208 PRO 198 H PHE 199 n 209 PHE 199 H VAL 200 n 210 VAL 200 H MET 201 n 211 MET 201 H LYS 202 n 212 LYS 202 H SER 203 n 213 SER 203 H PRO 204 n 214 PRO 204 H PHE 204 n 215 A PHE 204 H ASN 204 n 216 B ASN 204 H ASN 205 n 217 ASN 205 H ARG 206 n 218 ARG 206 H TRP 207 n 219 TRP 207 H TYR 208 n 220 TYR 208 H GLN 209 n 221 GLN 209 H MET 210 n 222 MET 210 H GLY 211 n 223 GLY 211 H ILE 212 n 224 ILE 212 H VAL 213 n 225 VAL 213 H SER 214 n 226 SER 214 H TRP 215 n 227 TRP 215 H GLY 216 n 228 GLY 216 H GLU 217 n 229 GLU 217 H GLY 219 n 230 GLY 219 H CYS 220 n 231 CYS 220 H ASP 221 n 232 ASP 221 H ARG 221 n 233 A ARG 221 H ASP 222 n 234 ASP 222 H GLY 223 n 235 GLY 223 H LYS 224 n 236 LYS 224 H TYR 225 n 237 TYR 225 H GLY 226 n 238 GLY 226 H PHE 227 n 239 PHE 227 H TYR 228 n 240 TYR 228 H THR 229 n 241 THR 229 H HIS 230 n 242 HIS 230 H VAL 231 n 243 VAL 231 H PHE 232 n 244 PHE 232 H ARG 233 n 245 ARG 233 H LEU 234 n 246 LEU 234 H LYS 235 n 247 LYS 235 H LYS 236 n 248 LYS 236 H TRP 237 n 249 TRP 237 H ILE 238 n 250 ILE 238 H GLN 239 n 251 GLN 239 H LYS 240 n 252 LYS 240 H VAL 241 n 253 VAL 241 H ILE 242 n 254 ILE 242 H ASP 243 n 255 ASP 243 H GLN 244 n 256 GLN 244 H PHE 245 n 257 PHE 245 H SIN 1 n 1 SIN 1 I PHE 2 n 2 PHE 2 I GLU 3 n 3 GLU 3 I GLU 4 n 4 GLU 4 I ILE 5 n 5 ILE 5 I PRO 6 n 6 PRO 6 I n 7 7 I n 8 8 I n 9 9 I n 10 10 I n 11 11 I ALA 1 n 1 B ALA 1 L ASP 1 n 2 A ASP 1 L CYS 1 n 3 CYS 1 L GLY 2 n 4 GLY 2 L LEU 3 n 5 LEU 3 L ARG 4 n 6 ARG 4 L PRO 5 n 7 PRO 5 L LEU 6 n 8 LEU 6 L PHE 7 n 9 PHE 7 L GLU 8 n 10 GLU 8 L LYS 9 n 11 LYS 9 L LYS 10 n 12 LYS 10 L SER 11 n 13 SER 11 L LEU 12 n 14 LEU 12 L GLU 13 n 15 GLU 13 L ASP 14 n 16 ASP 14 L LYS 14 n 17 A LYS 14 L THR 14 n 18 B THR 14 L GLU 14 n 19 C GLU 14 L ARG 14 n 20 D ARG 14 L GLU 14 n 21 E GLU 14 L LEU 14 n 22 F LEU 14 L LEU 14 n 23 G LEU 14 L GLU 14 n 24 H GLU 14 L SER 14 n 25 I SER 14 L TYR 14 n 26 J TYR 14 L ILE 14 n 27 K ILE 14 L ASP 14 n 28 L ASP 14 L 1.5253 -0.6919 0.4700 1.9467 -0.7005 2.5848 -0.0092 -0.0835 -0.0463 0.0701 0.0208 0.1390 -0.1132 -0.2198 -0.0117 -0.1429 0.0407 0.0192 -0.1313 -0.0134 -0.0836 refined -0.1020 10.6980 24.5030 X-RAY DIFFRACTION 1.4980 -0.8022 0.1992 1.4295 -0.2733 0.9882 0.0865 0.1038 -0.0805 -0.0783 -0.0713 0.0421 0.0601 0.0555 -0.0152 -0.1414 0.0195 -0.0033 -0.1417 -0.0160 -0.1107 refined 14.1670 -0.8860 19.8950 X-RAY DIFFRACTION 12.6290 5.0890 -5.7962 11.6787 7.6309 12.9772 0.2601 0.4360 -0.0696 -0.7144 -0.1741 -0.5223 0.1473 -0.0795 -0.0859 0.0550 0.0913 -0.0355 0.1102 -0.0750 0.0345 refined 8.1500 -4.7800 -1.5520 X-RAY DIFFRACTION L 1 L 14 X-RAY DIFFRACTION 1 H 16 H 245 X-RAY DIFFRACTION 2 I 1 I 6 X-RAY DIFFRACTION 3 software_defined_assembly PQS 3 trimeric 3570 -21.6 15390 H LYS 169 A O LYS 174 1_555 H CA 1249 F CA CA 1_555 H THR 172 A O THR 177 1_555 72.6 H LYS 169 A O LYS 174 1_555 H CA 1249 F CA CA 1_555 A H PHE 204 A O PHE 215 4_546 89.8 H THR 172 A O THR 177 1_555 H CA 1249 F CA CA 1_555 A H PHE 204 A O PHE 215 4_546 87.8 H LYS 169 A O LYS 174 1_555 H CA 1249 F CA CA 1_555 H HOH 2237 G O HOH 1_555 79.4 H THR 172 A O THR 177 1_555 H CA 1249 F CA CA 1_555 H HOH 2237 G O HOH 1_555 148.8 A H PHE 204 A O PHE 215 4_546 H CA 1249 F CA CA 1_555 H HOH 2237 G O HOH 1_555 78.4 H LYS 169 A O LYS 174 1_555 H CA 1249 F CA CA 1_555 H HOH 2245 G O HOH 1_555 62.7 H THR 172 A O THR 177 1_555 H CA 1249 F CA CA 1_555 H HOH 2245 G O HOH 1_555 74.2 A H PHE 204 A O PHE 215 4_546 H CA 1249 F CA CA 1_555 H HOH 2245 G O HOH 1_555 150.4 H HOH 2237 G O HOH 1_555 H CA 1249 F CA CA 1_555 H HOH 2245 G O HOH 1_555 105.0 H LYS 169 A O LYS 174 1_555 H CA 1249 F CA CA 1_555 H HOH 2284 G O HOH 4_546 163.2 H THR 172 A O THR 177 1_555 H CA 1249 F CA CA 1_555 H HOH 2284 G O HOH 4_546 92.4 A H PHE 204 A O PHE 215 4_546 H CA 1249 F CA CA 1_555 H HOH 2284 G O HOH 4_546 81.8 H HOH 2237 G O HOH 1_555 H CA 1249 F CA CA 1_555 H HOH 2284 G O HOH 4_546 112.8 H HOH 2245 G O HOH 1_555 H CA 1249 F CA CA 1_555 H HOH 2284 G O HOH 4_546 121.5 A H ARG 221 A O ARG 233 1_555 H NA 1248 E NA NA 1_555 H LYS 224 A O LYS 236 1_555 94.7 A H ARG 221 A O ARG 233 1_555 H NA 1248 E NA NA 1_555 H HOH 2261 G O HOH 1_555 87.7 H LYS 224 A O LYS 236 1_555 H NA 1248 E NA NA 1_555 H HOH 2261 G O HOH 1_555 93.6 A H ARG 221 A O ARG 233 1_555 H NA 1248 E NA NA 1_555 H HOH 2304 G O HOH 1_555 107.5 H LYS 224 A O LYS 236 1_555 H NA 1248 E NA NA 1_555 H HOH 2304 G O HOH 1_555 157.8 H HOH 2261 G O HOH 1_555 H NA 1248 E NA NA 1_555 H HOH 2304 G O HOH 1_555 85.4 A H ARG 221 A O ARG 233 1_555 H NA 1248 E NA NA 1_555 H HOH 2312 G O HOH 1_555 163.3 H LYS 224 A O LYS 236 1_555 H NA 1248 E NA NA 1_555 H HOH 2312 G O HOH 1_555 71.7 H HOH 2261 G O HOH 1_555 H NA 1248 E NA NA 1_555 H HOH 2312 G O HOH 1_555 83.7 H HOH 2304 G O HOH 1_555 H NA 1248 E NA NA 1_555 H HOH 2312 G O HOH 1_555 86.1 A H ARG 221 A O ARG 233 1_555 H NA 1248 E NA NA 1_555 H HOH 2313 G O HOH 1_555 100.9 H LYS 224 A O LYS 236 1_555 H NA 1248 E NA NA 1_555 H HOH 2313 G O HOH 1_555 82.3 H HOH 2261 G O HOH 1_555 H NA 1248 E NA NA 1_555 H HOH 2313 G O HOH 1_555 170.7 H HOH 2304 G O HOH 1_555 H NA 1248 E NA NA 1_555 H HOH 2313 G O HOH 1_555 95.2 H HOH 2312 G O HOH 1_555 H NA 1248 E NA NA 1_555 H HOH 2313 G O HOH 1_555 87.1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 H N SER 20 A N SER 5 H O VAL 157 A O VAL 162 H N LEU 160 A N LEU 165 H O GLY 136 A O GLY 136 H N THR 139 A N THR 139 H O PRO 198 A O PRO 208 H N MET 201 A N MET 211 H O TYR 208 A O TYR 220 H N SER 214 A N SER 226 H O PHE 227 A O PHE 239 H N TYR 228 A N TYR 240 H O PHE 181 A O PHE 186 H N ARG 35 A N ARG 20 H O GLU 39 A O GLU 25 H N SER 45 A N SER 31 H O LEU 53 A O LEU 39 H N THR 54 A N THR 40 H O ALA 104 A O ALA 101 H O LYS 107 A O LYS 104 H N GLU 86 A N GLU 82 H N LEU 85 A N LEU 81 H O LEU 64 A O LEU 59 H N ARG 67 A N ARG 62 H O MET 32 A O MET 17 A H N TYR 60 A N TYR 47 F H O LYS 60 A O LYS 52 1 H HOH 2050 G HOH 1 H HOH 2120 G HOH 1 H CG ARG 75 A CG ARG 70 1 Y 1 H CD ARG 75 A CD ARG 70 1 Y 1 H NE ARG 75 A NE ARG 70 1 Y 1 H CZ ARG 75 A CZ ARG 70 1 Y 1 H NH1 ARG 75 A NH1 ARG 70 1 Y 1 H NH2 ARG 75 A NH2 ARG 70 1 Y A 1 H TRP 147 A TRP 148 1 Y B 1 H THR 147 A THR 149 1 Y C 1 H ALA 147 A ALA 150 1 Y D 1 H ASN 147 A ASN 151 1 Y E 1 H VAL 147 A VAL 152 1 Y F 1 H GLY 147 A GLY 153 1 Y G 1 H LYS 147 A LYS 154 1 Y 1 I GLU 7 B GLU 7 1 Y 1 I GLU 8 B GLU 8 1 Y 1 I TYR 9 B TYR 9 1 Y 1 I LEU 10 B LEU 10 1 Y 1 I GLN 11 B GLN 11 1 Y 1 H H ND2 O ASN HOH 143 2203 2.15 A 1 H TYR 60 -153.07 84.65 G 1 H ASN 60 -159.10 76.14 1 H HIS 71 -134.04 -60.37 1 H ILE 79 -129.01 -63.06 A 1 H GLU 97 -117.39 -73.31 1 L PHE 7 -129.01 -91.48 24.05 -0.01000 0.00000 -0.71000 -0.13000 0.00000 -0.12000 0.964 0.957 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. THE SIDE CHAIN OF ARG 75 HAS ALTERNATIVE CONFORMATIONS, ONE OF WHICH IS ON A DIAD AXIS. IT HAS NOT BEEN MODELLED. 0.199 0.180 0.181 1.30 71.25 4308 81614 5.000 98.2 1.577 0.034 RANDOM LIKELY RESIDUAL 1 THROUGHOUT FOURIER SYNTHESIS 0.048 0.049 0.80 0.80 1.20 PDB ENTRY 1OYT MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 1.30 71.25 397 2732 34 0 2301 0.012 0.022 2462 0.001 0.020 2229 1.603 1.985 3339 0.832 3.000 5197 6.066 5.000 294 33.054 23.363 113 11.166 15.000 435 13.204 15.000 20 0.115 0.200 350 0.007 0.020 2714 0.001 0.020 518 0.196 0.200 425 0.187 0.200 2324 0.179 0.200 1191 0.082 0.200 1430 0.142 0.200 283 0.041 0.200 2 0.320 0.200 28 0.141 0.200 23 0.797 1.500 1455 1.332 2.000 2355 1.957 3.000 1056 2.701 4.500 984 0.2990 0.2610 1.33 288 5678 20 1.300 20.000 2CF8 85919 -3.000 0.04000 1 17.8000 3.580 98.2 0.30000 1.30 1.37 4.200 1 3.08 95.9 refinement REFMAC 5.2.0005 data reduction XDS data scaling XDS Complex of recombinant human thrombin with an inhibitor 1 N N 2 N N 3 N N 4 N N 5 N N 6 N N 7 N N 7 N N 7 N N H ALA 55 A ALA 41 HELX_P H CYS 58 A CYS 44 5 1 4 H PRO 60 A PRO 48 HELX_P H ASP 60 A ASP 51 5 2 4 B E H THR 60 A THR 55 HELX_P H ASN 62 A ASN 57 5 3 3 I H ASP 125 A ASP 122 HELX_P H LEU 130 A LEU 130 1 4 9 H GLU 164 A GLU 169 HELX_P H SER 171 A SER 176 1 5 8 H LYS 185 A LYS 191 HELX_P H GLY 186 A GLY 195 5 6 5 C H LEU 234 A LEU 246 HELX_P H PHE 245 A PHE 257 1 7 12 L PHE 7 C PHE 9 HELX_P L SER 11 C SER 13 5 8 5 L THR 14 C THR 18 HELX_P L TYR 14 C TYR 26 1 9 9 B J disulf 2.030 H CYS 42 A SG CYS 28 1_555 H CYS 58 A SG CYS 44 1_555 disulf 2.081 H CYS 122 A SG CYS 119 1_555 L CYS 1 C SG CYS 3 1_555 disulf 2.032 H CYS 168 A SG CYS 173 1_555 H CYS 182 A SG CYS 187 1_555 disulf 2.093 H CYS 191 A SG CYS 201 1_555 H CYS 220 A SG CYS 231 1_555 covale 1.331 both I SIN 1 B C1 SIN 1 1_555 I PHE 2 B N PHE 2 1_555 metalc 2.642 H LYS 169 A O LYS 174 1_555 H CA 1249 F CA CA 1_555 metalc 2.647 H THR 172 A O THR 177 1_555 H CA 1249 F CA CA 1_555 metalc 2.664 A H PHE 204 A O PHE 215 4_546 H CA 1249 F CA CA 1_555 metalc 2.275 A H ARG 221 A O ARG 233 1_555 H NA 1248 E NA NA 1_555 metalc 2.281 H LYS 224 A O LYS 236 1_555 H NA 1248 E NA NA 1_555 metalc 2.763 H NA 1248 E NA NA 1_555 H HOH 2261 G O HOH 1_555 metalc 2.554 H NA 1248 E NA NA 1_555 H HOH 2304 G O HOH 1_555 metalc 2.476 H NA 1248 E NA NA 1_555 H HOH 2312 G O HOH 1_555 metalc 2.305 H NA 1248 E NA NA 1_555 H HOH 2313 G O HOH 1_555 metalc 2.661 H CA 1249 F CA CA 1_555 H HOH 2237 G O HOH 1_555 metalc 2.907 H CA 1249 F CA CA 1_555 H HOH 2245 G O HOH 1_555 metalc 2.601 H CA 1249 F CA CA 1_555 H HOH 2284 G O HOH 4_546 HYDROLASE/HYDROLASE INHIBITOR HYDROLASE/INHIBITOR, ACUTE PHASE, BLOOD COAGULATION, CALCIUM-BINDING, GLYCOPROTEIN, HYDOLASE, SERINE PROTEASE, SERINE PROTEASE INHIBITOR COMPLEX, COMPLEX HYDROLASE-INHIBITOR, HYDROLASE-HYDROLASE INHIBITOR COMPLEX H SER 36 A SER 22 A 1 H PRO 37 A PRO 23 -8.79 THRB_HUMAN UNP 1 P00734 2CF8 PDB 2 2CF8 ITHH_HIRME UNP 2 P28508 THRB_HUMAN UNP 3 P00734 364 620 2CF8 16 245 P00734 H 1 1 257 1 1 2CF8 1 1 2CF8 I 2 1 1 56 65 2CF8 2 11 P28508 I 3 2 11 334 361 2CF8 1 14 P00734 B L L 4 1 28 7 7 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel H SER 20 A SER 5 H ASP 21 A ASP 6 H GLN 156 A GLN 161 H PRO 161 A PRO 166 H LYS 135 A LYS 135 H GLY 140 A GLY 140 H PRO 198 A PRO 208 H LYS 202 A LYS 212 H TRP 207 A TRP 219 H TRP 215 A TRP 227 H GLY 226 A GLY 238 H HIS 230 A HIS 242 H MET 180 A MET 185 H ALA 183 A ALA 188 H GLN 30 A GLN 15 H ARG 35 A ARG 20 H GLU 39 A GLU 25 H LEU 46 A LEU 32 H TRP 51 A TRP 37 H THR 54 A THR 40 H ALA 104 A ALA 101 H LEU 108 A LEU 105 H LYS 81 A LYS 77 H ILE 90 A ILE 86 H LEU 64 A LEU 59 H ILE 68 A ILE 63 H GLN 30 A GLN 15 H ARG 35 A ARG 20 H LEU 60 A LEU 46 H TYR 60 A TYR 47 A H LYS 60 A LYS 52 H ASN 60 A ASN 53 F G BINDING SITE FOR RESIDUE ESH H 1246 H ESH 1246 Software 13 BINDING SITE FOR RESIDUE NA H 1248 H NA 1248 Software 6 BINDING SITE FOR RESIDUE CA H 1249 H CA 1249 Software 6 BINDING SITE FOR CHAIN I OF HIRUDIN IIIA Software 15 H TYR 60 A TYR 47 A 13 1_555 H GLU 97 A GLU 94 A 13 1_555 H LEU 99 A LEU 96 13 1_555 H ASP 189 A ASP 199 13 1_555 H ALA 190 A ALA 200 13 1_555 H GLU 192 A GLU 202 13 1_555 H SER 214 A SER 226 13 1_555 H TRP 215 A TRP 227 13 1_555 H GLY 216 A GLY 228 13 1_555 H GLY 219 A GLY 230 13 1_555 H GLY 226 A GLY 238 13 1_555 H HOH 2315 G HOH 13 1_555 H HOH 2330 G HOH 13 1_555 H ARG 221 A ARG 233 A 6 1_555 H LYS 224 A LYS 236 6 1_555 H HOH 2261 G HOH 6 1_555 H HOH 2304 G HOH 6 1_555 H HOH 2312 G HOH 6 1_555 H HOH 2313 G HOH 6 1_555 H LYS 169 A LYS 174 6 1_555 H THR 172 A THR 177 6 1_555 H PHE 204 A PHE 215 A 6 4_546 H HOH 2237 G HOH 6 1_555 H HOH 2245 G HOH 6 1_555 H HOH 2284 G HOH 6 4_546 H PHE 34 A PHE 19 15 1_555 H GLN 38 A GLN 24 15 1_555 H LEU 65 A LEU 60 15 1_555 H ARG 67 A ARG 62 15 1_555 H ARG 73 A ARG 68 15 1_555 H THR 74 A THR 69 15 1_555 H ARG 75 A ARG 70 15 1_555 H TYR 76 A TYR 71 15 1_555 H ILE 82 A ILE 78 15 1_555 H HOH 2109 G HOH 15 2_555 H HOH 2114 G HOH 15 1_555 I HOH 2001 H HOH 15 1_555 I HOH 2002 H HOH 15 1_555 I HOH 2003 H HOH 15 1_555 I HOH 2004 H HOH 15 1_555 5 C 1 2 1