0.032006 0.000000 0.000000 0.000000 0.019161 0.000000 0.000000 0.000000 0.017212 0.00000 0.00000 0.00000 Frese, S. Schubert, W.-D. Findeis, A.C. Marquardt, T. Roske, Y.S. Stradal, T.E.B. Heinz, D.W. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 31.244 52.188 58.100 C2 H4 O 44.053 ACETYL GROUP non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C3 H8 O 60.095 ISOPROPYL ALCOHOL 2-PROPANOL non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C6 H14 O2 118.174 (4S)-2-METHYL-2,4-PENTANEDIOL non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C9 H12 N O6 P 261.168 n O-PHOSPHOTYROSINE PHOSPHONOTYROSINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N C N 2 N O N 3 N C N 4 N H N 5 N H N 6 N H N 7 N H N 8 N N N 9 S C N 10 N C N 11 N O N 12 N C N 13 N O N 14 N H N 15 N H N 16 N H N 17 N H N 18 N H N 19 N H N 20 N H N 21 N N N 22 S C N 23 N C N 24 N O N 25 N C N 26 N C N 27 N C N 28 N N N 29 N C N 30 N N N 31 N N N 32 N O N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N N N 49 S C N 50 N C N 51 N O N 52 N C N 53 N C N 54 N O N 55 N N N 56 N O N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N N N 66 S C N 67 N C N 68 N O N 69 N C N 70 N C N 71 N O N 72 N O N 73 N O N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N N N 82 R C N 83 N C N 84 N O N 85 N C N 86 N S N 87 N O N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N N N 96 S C N 97 N C N 98 N O N 99 N C N 100 N C N 101 N C N 102 N O N 103 N N N 104 N O N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N N N 116 S C N 117 N C N 118 N O N 119 N C N 120 N C N 121 N C N 122 N O N 123 N O N 124 N O N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N N N 135 N C N 136 N C N 137 N O N 138 N O N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N N N 145 S C N 146 N C N 147 N O N 148 N C Y 149 N C Y 150 N N Y 151 N C Y 152 N C Y 153 N N N 154 N O N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N O N 166 N H N 167 N H N 168 N N N 169 S C N 170 N C N 171 N O N 172 S C N 173 N C N 174 N C N 175 N C N 176 N O N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N C N 191 N C N 192 N C N 193 N O N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N N N 203 S C N 204 N C N 205 N O N 206 N C N 207 N C N 208 N C N 209 N C N 210 N O N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N N N 225 S C N 226 N C N 227 N O N 228 N C N 229 N C N 230 N C N 231 N C N 232 N N N 233 N O N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N N N 250 S C N 251 N C N 252 N O N 253 N C N 254 N C N 255 N S N 256 N C N 257 N O N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N C N 270 N C N 271 N O N 272 N C N 273 N C N 274 S C N 275 N O N 276 N C N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N N N 292 S C N 293 N C N 294 N O N 295 N C Y 296 N C Y 297 N C Y 298 N C Y 299 N C Y 300 N C Y 301 N C N 302 N O N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N N N 315 S C N 316 N C N 317 N O N 318 N C N 319 N C N 320 N C N 321 N O N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N N N 332 S C N 333 N C N 334 N O N 335 N O N 336 N C Y 337 N C Y 338 N C Y 339 N C Y 340 N C Y 341 N C Y 342 N C N 343 N O N 344 N P N 345 N O N 346 N O N 347 N O N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N N N 361 S C N 362 N C N 363 N O N 364 N C N 365 N O N 366 N O N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N N N 375 S C N 376 N C N 377 N O N 378 R C N 379 N O N 380 N C N 381 N O N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N N N 392 S C N 393 N C N 394 N O N 395 N C Y 396 N C Y 397 N C Y 398 N C Y 399 N N Y 400 N C Y 401 N C Y 402 N C Y 403 N C Y 404 N C N 405 N O N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N N N 419 S C N 420 N C N 421 N O N 422 N C Y 423 N C Y 424 N C Y 425 N C Y 426 N C Y 427 N C Y 428 N C N 429 N O N 430 N O N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N N N 443 S C N 444 N C N 445 N O N 446 N C N 447 N C N 448 N C N 449 N O N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 1 N doub N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N doub N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N doub N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N doub N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N doub N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N doub N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N doub N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N doub N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N doub N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N doub N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N doub N 142 N sing N 143 N sing N 144 N sing N 145 N sing Y 146 N sing Y 147 N doub Y 148 N doub N 149 N sing Y 150 N sing N 151 N sing Y 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N doub N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N doub N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N doub N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N doub N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N doub N 282 N sing N 283 N sing N 284 N sing N 285 N sing Y 286 N doub Y 287 N sing Y 288 N sing N 289 N sing Y 290 N doub N 291 N sing Y 292 N doub N 293 N sing Y 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N doub N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N doub N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing Y 327 N doub Y 328 N sing Y 329 N sing N 330 N sing Y 331 N doub N 332 N sing Y 333 N doub N 334 N sing Y 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N doub N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N doub N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N doub N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N doub N 380 N sing N 381 N sing N 382 N sing N 383 N sing Y 384 N doub Y 385 N sing Y 386 N sing N 387 N sing Y 388 N doub Y 389 N sing Y 390 N sing N 391 N sing Y 392 N sing Y 393 N doub N 394 N sing Y 395 N doub N 396 N sing Y 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N doub N 408 N sing N 409 N sing N 410 N sing N 411 N sing Y 412 N doub Y 413 N sing Y 414 N sing N 415 N sing Y 416 N doub N 417 N sing Y 418 N doub N 419 N sing Y 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N doub N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing US J.Biol.Chem. JBCHA3 0071 0021-9258 281 18236 10.1074/JBC.M512917200 16636066 The Phosphotyrosine Peptide Binding Specificity of Nck1 and Nck2 Src Homology 2 Domains. 2006 10.2210/pdb2cia/pdb pdb_00002cia 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 2 AU COATED X-RAY MIRRORS CCD 2004-05-17 MARRESEARCH ROEMO TYPE DOUBLE CRYSTAL MONOCHROMATOR SINGLE WAVELENGTH M x-ray 1 1.050 1.0 BW6 MPG/DESY, HAMBURG 1.050 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 11679.088 CYTOPLASMIC PROTEIN NCK2 SH2-DOMAIN, RESIDUES 284-380 1 man polymer THE PEPTIDE WAS SYNTHESIZED CHEMICALLY 1236.201 TRANSLOCATED INTIMIN RECEPTOR PHOSPHOPEPTIDE LIGAND OF NCK-SH2, RESIDUES 471-480 1 syn polymer 118.174 (4S)-2-METHYL-2,4-PENTANEDIOL 1 syn non-polymer 60.095 ISOPROPYL ALCOHOL 1 syn non-polymer 18.015 water 103 nat water NCK ADAPTOR PROTEIN 2, SH2/SH3 ADAPTOR PROTEIN NCK-BETA, NCK-2 no no GPLGSEWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNVYCIGQRRFHTMDELVEH YKKAPIFTSEHGEKLYLVRALQ GPLGSEWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNVYCIGQRRFHTMDELVEH YKKAPIFTSEHGEKLYLVRALQ A polypeptide(L) no yes (ACE)HI(PTR)DEVAADP XHIYDEVAADP L polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n HUMAN sample 9606 HOMO SAPIENS 511693 ESCHERICHIA COLI BL21 PGEX-6P-1 (AMERSHAM BIOSCIENCES) 1 1.98 37.4 VAPOR DIFFUSION, HANGING DROP 7.00 METHOD: HANGING-DROP, VAPOUR-DIFFUSION PROTEIN CONCENTRATION: 8 MG/ML PROTEIN:LIGAND = 1:1.1 RESERVOIRE: 50% MPD, 15% ETHANOL, 0.01 M NA2 ACETATE, pH 7.00 exptl_crystal_grow pdbx_database_proc pdbx_database_status struct_biol struct_conn chem_comp_atom chem_comp_bond database_2 pdbx_database_status pdbx_initial_refinement_model repository Initial release Advisory Version format compliance Data collection Derived calculations Experimental preparation Other Data collection Database references Other Refinement description 1 0 2006-04-24 1 1 2011-07-13 1 2 2019-05-29 1 3 2024-05-01 _exptl_crystal_grow.method _pdbx_database_status.recvd_author_approval _struct_conn.pdbx_leaving_atom_flag _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_sf SOLUTION STRUCTURE OF THE SH3 DOMAIN OF THE HUMANCYTOPLASMIC PROTEIN NCK2 STRUCTURAL INSIGHT INTO THE BINDING DIVERSITY BETWEEN THETYR-PHOSPHORYLATED HUMAN EPHRINBS AND NCK2 SH2 DOMAIN NCK1 SH2-DOMAIN IN COMPLEX WITH A DODECAPHOSPHOPEPTIDE FROM EPEC PROTEIN TIR HELIX DETERMINATION METHOD: AUTHOR PROVIDED. SHEET DETERMINATION METHOD: AUTHOR PROVIDED. PDBE Y PDBE 2006-03-17 REL REL MPD (4S)-2-METHYL-2,4-PENTANEDIOL IPA ISOPROPYL ALCOHOL HOH water 562 ESCHERICHIA COLI sample N-TERMINALLY, RESIDUES GPLGS REMAIN ATTACHED TO NCK2-SH2 FOLLOWING CLEAVAGE OF THE GST-NCK2-SH2 FUSION PROTEIN NCK1-TIR other MPD 1381 3 MPD MPD 1381 A IPA 1382 4 IPA IPA 1382 A HOH 2001 5 HOH HOH 2001 A HOH 2002 5 HOH HOH 2002 A HOH 2003 5 HOH HOH 2003 A HOH 2004 5 HOH HOH 2004 A HOH 2005 5 HOH HOH 2005 A HOH 2006 5 HOH HOH 2006 A HOH 2007 5 HOH HOH 2007 A HOH 2008 5 HOH HOH 2008 A HOH 2009 5 HOH HOH 2009 A HOH 2010 5 HOH HOH 2010 A HOH 2011 5 HOH HOH 2011 A HOH 2012 5 HOH HOH 2012 A HOH 2013 5 HOH HOH 2013 A HOH 2014 5 HOH HOH 2014 A HOH 2015 5 HOH HOH 2015 A HOH 2016 5 HOH HOH 2016 A HOH 2017 5 HOH HOH 2017 A HOH 2018 5 HOH HOH 2018 A HOH 2019 5 HOH HOH 2019 A HOH 2020 5 HOH HOH 2020 A HOH 2021 5 HOH HOH 2021 A HOH 2022 5 HOH HOH 2022 A HOH 2023 5 HOH HOH 2023 A HOH 2024 5 HOH HOH 2024 A HOH 2025 5 HOH HOH 2025 A HOH 2026 5 HOH HOH 2026 A HOH 2027 5 HOH HOH 2027 A HOH 2028 5 HOH HOH 2028 A HOH 2029 5 HOH HOH 2029 A HOH 2030 5 HOH HOH 2030 A HOH 2031 5 HOH HOH 2031 A HOH 2032 5 HOH HOH 2032 A HOH 2033 5 HOH HOH 2033 A HOH 2034 5 HOH HOH 2034 A HOH 2035 5 HOH HOH 2035 A HOH 2036 5 HOH HOH 2036 A HOH 2037 5 HOH HOH 2037 A HOH 2038 5 HOH HOH 2038 A HOH 2039 5 HOH HOH 2039 A HOH 2040 5 HOH HOH 2040 A HOH 2041 5 HOH HOH 2041 A HOH 2042 5 HOH HOH 2042 A HOH 2043 5 HOH HOH 2043 A HOH 2044 5 HOH HOH 2044 A HOH 2045 5 HOH HOH 2045 A HOH 2046 5 HOH HOH 2046 A HOH 2047 5 HOH HOH 2047 A HOH 2048 5 HOH HOH 2048 A HOH 2049 5 HOH HOH 2049 A HOH 2050 5 HOH HOH 2050 A HOH 2051 5 HOH HOH 2051 A HOH 2052 5 HOH HOH 2052 A HOH 2053 5 HOH HOH 2053 A HOH 2054 5 HOH HOH 2054 A HOH 2055 5 HOH HOH 2055 A HOH 2056 5 HOH HOH 2056 A HOH 2057 5 HOH HOH 2057 A HOH 2058 5 HOH HOH 2058 A HOH 2059 5 HOH HOH 2059 A HOH 2060 5 HOH HOH 2060 A HOH 2061 5 HOH HOH 2061 A HOH 2062 5 HOH HOH 2062 A HOH 2063 5 HOH HOH 2063 A HOH 2064 5 HOH HOH 2064 A HOH 2065 5 HOH HOH 2065 A HOH 2066 5 HOH HOH 2066 A HOH 2067 5 HOH HOH 2067 A HOH 2068 5 HOH HOH 2068 A HOH 2069 5 HOH HOH 2069 A HOH 2070 5 HOH HOH 2070 A HOH 2071 5 HOH HOH 2071 A HOH 2072 5 HOH HOH 2072 A HOH 2073 5 HOH HOH 2073 A HOH 2074 5 HOH HOH 2074 A HOH 2075 5 HOH HOH 2075 A HOH 2076 5 HOH HOH 2076 A HOH 2077 5 HOH HOH 2077 A HOH 2078 5 HOH HOH 2078 A HOH 2079 5 HOH HOH 2079 A HOH 2080 5 HOH HOH 2080 A HOH 2081 5 HOH HOH 2081 A HOH 2082 5 HOH HOH 2082 A HOH 2083 5 HOH HOH 2083 A HOH 2084 5 HOH HOH 2084 A HOH 2085 5 HOH HOH 2085 A HOH 2086 5 HOH HOH 2086 A HOH 2087 5 HOH HOH 2087 A HOH 2088 5 HOH HOH 2088 A HOH 2089 5 HOH HOH 2089 A HOH 2090 5 HOH HOH 2090 A HOH 2091 5 HOH HOH 2091 A HOH 2092 5 HOH HOH 2092 A HOH 2001 5 HOH HOH 2001 L HOH 2002 5 HOH HOH 2002 L HOH 2003 5 HOH HOH 2003 L HOH 2004 5 HOH HOH 2004 L HOH 2005 5 HOH HOH 2005 L HOH 2006 5 HOH HOH 2006 L HOH 2007 5 HOH HOH 2007 L HOH 2008 5 HOH HOH 2008 L HOH 2009 5 HOH HOH 2009 L HOH 2010 5 HOH HOH 2010 L HOH 2011 5 HOH HOH 2011 L n 1 279 A n 2 280 A n 3 281 A n 4 282 A SER 283 n 5 SER 283 A GLU 284 n 6 GLU 284 A TRP 285 n 7 TRP 285 A TYR 286 n 8 TYR 286 A TYR 287 n 9 TYR 287 A GLY 288 n 10 GLY 288 A ASN 289 n 11 ASN 289 A VAL 290 n 12 VAL 290 A THR 291 n 13 THR 291 A ARG 292 n 14 ARG 292 A HIS 293 n 15 HIS 293 A GLN 294 n 16 GLN 294 A ALA 295 n 17 ALA 295 A GLU 296 n 18 GLU 296 A CYS 297 n 19 CYS 297 A ALA 298 n 20 ALA 298 A LEU 299 n 21 LEU 299 A ASN 300 n 22 ASN 300 A GLU 301 n 23 GLU 301 A ARG 302 n 24 ARG 302 A GLY 303 n 25 GLY 303 A VAL 304 n 26 VAL 304 A GLU 305 n 27 GLU 305 A GLY 306 n 28 GLY 306 A ASP 307 n 29 ASP 307 A PHE 308 n 30 PHE 308 A LEU 309 n 31 LEU 309 A ILE 310 n 32 ILE 310 A ARG 311 n 33 ARG 311 A ASP 312 n 34 ASP 312 A SER 313 n 35 SER 313 A GLU 314 n 36 GLU 314 A SER 315 n 37 SER 315 A SER 316 n 38 SER 316 A PRO 317 n 39 PRO 317 A SER 318 n 40 SER 318 A ASP 319 n 41 ASP 319 A PHE 320 n 42 PHE 320 A SER 321 n 43 SER 321 A VAL 322 n 44 VAL 322 A SER 323 n 45 SER 323 A LEU 324 n 46 LEU 324 A LYS 325 n 47 LYS 325 A ALA 326 n 48 ALA 326 A SER 327 n 49 SER 327 A GLY 328 n 50 GLY 328 A LYS 329 n 51 LYS 329 A ASN 330 n 52 ASN 330 A LYS 331 n 53 LYS 331 A HIS 332 n 54 HIS 332 A PHE 333 n 55 PHE 333 A LYS 334 n 56 LYS 334 A VAL 335 n 57 VAL 335 A GLN 336 n 58 GLN 336 A LEU 337 n 59 LEU 337 A VAL 338 n 60 VAL 338 A ASP 339 n 61 ASP 339 A ASN 340 n 62 ASN 340 A VAL 341 n 63 VAL 341 A TYR 342 n 64 TYR 342 A CYS 343 n 65 CYS 343 A ILE 344 n 66 ILE 344 A GLY 345 n 67 GLY 345 A GLN 346 n 68 GLN 346 A ARG 347 n 69 ARG 347 A ARG 348 n 70 ARG 348 A PHE 349 n 71 PHE 349 A HIS 350 n 72 HIS 350 A THR 351 n 73 THR 351 A MET 352 n 74 MET 352 A ASP 353 n 75 ASP 353 A GLU 354 n 76 GLU 354 A LEU 355 n 77 LEU 355 A VAL 356 n 78 VAL 356 A GLU 357 n 79 GLU 357 A HIS 358 n 80 HIS 358 A TYR 359 n 81 TYR 359 A LYS 360 n 82 LYS 360 A LYS 361 n 83 LYS 361 A ALA 362 n 84 ALA 362 A PRO 363 n 85 PRO 363 A ILE 364 n 86 ILE 364 A PHE 365 n 87 PHE 365 A THR 366 n 88 THR 366 A SER 367 n 89 SER 367 A GLU 368 n 90 GLU 368 A HIS 369 n 91 HIS 369 A GLY 370 n 92 GLY 370 A GLU 371 n 93 GLU 371 A LYS 372 n 94 LYS 372 A LEU 373 n 95 LEU 373 A TYR 374 n 96 TYR 374 A LEU 375 n 97 LEU 375 A VAL 376 n 98 VAL 376 A ARG 377 n 99 ARG 377 A ALA 378 n 100 ALA 378 A LEU 379 n 101 LEU 379 A GLN 380 n 102 GLN 380 A ACE 471 n 1 ACE 471 L HIS 472 n 2 HIS 472 L ILE 473 n 3 ILE 473 L PTR 474 n 4 PTR 474 L ASP 475 n 5 ASP 475 L GLU 476 n 6 GLU 476 L VAL 477 n 7 VAL 477 L ALA 478 n 8 ALA 478 L ALA 479 n 9 ALA 479 L ASP 480 n 10 ASP 480 L n 11 481 L 2.0780 -0.1175 -0.6339 0.9174 0.5820 1.6084 -0.0418 -0.0260 -0.0126 0.0554 0.0112 0.0263 0.0554 -0.0166 0.0306 -0.0530 0.0041 -0.0023 -0.0555 0.0133 -0.0259 refined 9.8110 51.2000 18.6590 X-RAY DIFFRACTION 3.8051 2.5145 -0.5274 10.1891 2.6432 7.0317 0.0061 -0.3238 -0.3674 0.8870 0.0590 -0.8624 0.4510 0.4425 -0.0651 -0.0478 0.0694 -0.0449 -0.0246 0.0715 0.0103 refined 15.7020 47.5640 26.2060 X-RAY DIFFRACTION A 283 A 380 X-RAY DIFFRACTION 1 L 471 L 479 X-RAY DIFFRACTION 2 author_and_software_defined_assembly PQS 2 dimeric L PTR 474 O-PHOSPHOTYROSINE B PTR 4 TYR 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N PHE 349 A N PHE 71 A O TYR 342 A O TYR 64 A N CYS 343 A N CYS 65 A O GLN 336 A O GLN 58 A N VAL 335 A N VAL 57 A O PHE 320 A O PHE 42 A N SER 323 A N SER 45 A O LEU 309 A O LEU 31 A N PHE 308 A N PHE 30 A O ARG 377 A O ARG 99 A O PHE 365 A O PHE 87 A N LEU 373 A N LEU 95 1 A OG SER 283 A OG SER 5 1 Y 1 L CA ASP 480 B CA ASP 10 1 Y 1 L C ASP 480 B C ASP 10 1 Y 1 L O ASP 480 B O ASP 10 1 Y 1 L CB ASP 480 B CB ASP 10 1 Y 1 L CG ASP 480 B CG ASP 10 1 Y 1 L OD1 ASP 480 B OD1 ASP 10 1 Y 1 L OD2 ASP 480 B OD2 ASP 10 1 Y 1 A CM MPD 1381 C CM MPD 1 1 N 1 A O4 MPD 1381 C O4 MPD 1 1 N 1 A GLY 279 A GLY 1 1 Y 1 A PRO 280 A PRO 2 1 Y 1 A LEU 281 A LEU 3 1 Y 1 A GLY 282 A GLY 4 1 Y 1 L PRO 481 B PRO 11 1 Y 1 12.90 1.10 114.20 127.10 A A A CA CB SG CYS CYS CYS 297 297 297 B N 1 A A CB SG CYS CYS 297 297 -0.102 0.016 1.812 1.710 B N 1 A ASN 289 -91.13 38.72 14.30 0.03000 0.00000 0.00000 -0.01000 0.00000 -0.02000 0.972 0.966 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.170 0.149 0.150 1.45 20.03 879 16142 5.200 98.5 2.162 0.041 RANDOM LIKELY RESIDUAL 1 THROUGHOUT MOLECULAR REPLACEMENT 0.068 0.066 0.80 0.80 1.40 NCK1-TIR MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 1.45 20.03 103 984 10 0 871 0.020 0.021 1031 0.004 0.020 706 1.742 1.965 1410 1.907 3.000 1734 4.725 5.000 135 35.841 24.182 55 12.601 15.000 189 19.188 15.000 7 0.113 0.200 148 0.007 0.020 1184 0.003 0.020 218 0.217 0.200 157 0.214 0.200 732 0.195 0.200 484 0.130 0.200 581 0.201 0.200 75 0.197 0.200 15 0.314 0.200 51 0.170 0.200 19 2.285 2.000 625 0.582 2.000 239 3.118 3.000 989 2.785 2.000 465 3.958 3.000 413 0.2270 0.1760 1.49 67 1069 20 95.62 1.450 30.000 2CIA 16143 0.000 0.04000 1 25.1000 3.300 98.4 0.31000 1.45 1.48 3.700 1 2.90 97.0 refinement REFMAC 5.2.0019 data reduction DENZO data scaling SCALEPACK phasing EPMR human nck2 sh2-domain in complex with a decaphosphopeptide from translocated intimin receptor (tir) of epec 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N A THR 291 A THR 13 HELX_P A ASN 300 A ASN 22 1 1 10 A THR 351 A THR 73 HELX_P A ALA 362 A ALA 84 1 2 12 covale 1.364 both L ACE 471 B C ACE 1 1_555 L HIS 472 B N HIS 2 1_555 covale 1.344 both L ILE 473 B C ILE 3 1_555 L PTR 474 B N PTR 4 1_555 covale 1.331 both L PTR 474 B C PTR 4 1_555 L ASP 475 B N ASP 5 1_555 SH2-DOMAIN SH2-DOMAIN, SH3 DOMAIN, PHOSPHORYLATION, BINDING SPECIFICITY 2CIA PDB 1 2CIA NCK2_HUMAN UNP 1 O43639 2CIA PDB 2 2CIA O50190_ECOLI UNP 2 O50190 279 283 2CIA 279 283 2CIA A 1 1 5 284 380 2CIA 284 380 O43639 A 2 6 102 471 471 2CIA 471 471 2CIA L 3 1 1 471 480 2CIA 472 481 O50190 L 4 2 11 6 2 anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel A ARG 347 A ARG 69 A PHE 349 A PHE 71 A VAL 341 A VAL 63 A ILE 344 A ILE 66 A LYS 329 A LYS 51 A VAL 335 A VAL 57 A ASP 319 A ASP 41 A ALA 326 A ALA 48 A ASP 307 A ASP 29 A SER 313 A SER 35 A ALA 378 A ALA 100 A ALA 378 A ALA 100 A PHE 365 A PHE 87 A SER 367 A SER 89 A GLU 371 A GLU 93 A LEU 373 A LEU 95 BINDING SITE FOR RESIDUE MPD A1381 Software 2 BINDING SITE FOR RESIDUE IPA A1382 Software 4 A GLN 294 A GLN 16 2 1_555 A HIS 350 A HIS 72 2 1_555 A PHE 320 A PHE 42 4 1_555 A TYR 342 A TYR 64 4 1_555 A HOH 2054 E HOH 4 1_555 L ALA 479 B ALA 9 4 1_555 19 P 21 21 21