1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Papavoine, C.H.M.
Christiaans, B.E.C.
Folmer, R.H.A.
Konings, R.N.H.
Hilbers, C.W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
282
401
419
10.1006/jmbi.1998.1860
9735296
Solution structure of the M13 major coat protein in detergent micelles: a basis for a model of phage assembly involving specific residues.
1998
US
Biochemistry
BICHAW
0033
0006-2960
36
4015
Backbone Dynamics of the Major Coat Protein of Bacteriophage M13 in Detergent Micelles by 15N Nuclear Magnetic Resonance Relaxation Measurements Using the Model-Free Approach and Reduced Spectral Density Mapping
1997
IX
Eur.J.Biochem.
EJBCAI
0262
0014-2956
232
490
NMR Studies of the Major Coat Protein of Bacteriophage M13. Structural Information of Gviiip in Dodecylphosphocholine Micelles
1995
US
Biochemistry
BICHAW
0033
0006-2960
33
12990
Location of M13 Coat Protein in Sodium Dodecyl Sulfate Micelles as Determined by NMR
1994
US
Biochemistry
BICHAW
0033
0006-2960
32
8322
Assignment of 1H, 15N, and Backbone 13C Resonances in Detergent-Solubilized M13 Coat Protein Via Multinuclear Multidimensional NMR: A Model for the Coat Protein Monomer
1993
10.2210/pdb2cps/pdb
pdb_00002cps
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
5243.014
M13 MAJOR COAT PROTEIN
1
man
polymer
M13 GENE-VIII-PROTEIN OR M13 GVIIIP
no
no
AEGDDPAKAAFNSLQASATEYIGYAWAMVVVIVGATIGIKLFKKFTSKAS
AEGDDPAKAAFNSLQASATEYIGYAWAMVVVIVGATIGIKLFKKFTSKAS
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Inovirus
Escherichia
sample
10870
Enterobacteria phage M13
562
Escherichia coli
M13
database_2
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Other
1
0
1998-11-11
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-03-09
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
Y
BNL
1998-04-16
REL
REL
THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR SPECTROSCOPY ON 13C, 15N -LABELED M13 COAT PROTEIN SOLUBILIZED IN DEUTERATED SODIUM DODECYL SULPHATE MICELLES (CONCENTRATION COAT PROTEIN/SDS = 1:250)
LOWEST ENERGY, DISTANCE RESTRAINTS SMALLER THAN 0.5 A, DIHEDRAL VIOLATIONS SMALLER THAN 5 DEGREES
80
25
DQF-COSY
TOCSY
NOESY
NOESY-HMQC (15N AND 13C)
TOCSY-HMQC (15N)
HCCH-TOCSY
ROESY-GHSQC
HMQC-NOESY-GHSQC
HMQC-J
HNHA
HACACB-COSY
HNHB
HSQC(3J CGN)
HSQC(3JCGC')
4.9
311
K
RESTRAINED MOLECULAR DYNAMICS, SIMULATED ANNEALING, THIS VERSION OF X-PLOR WAS EXTENDED FOR FLOATING CHIRALITY
H2O
BRUNGER
refinement
X-PLOR
3.1
structure solution
X-PLOR
3.1
400
Varian
UNITY
500
Bruker
AM
600
Bruker
AMX
ALA
1
n
1
ALA
1
A
GLU
2
n
2
GLU
2
A
GLY
3
n
3
GLY
3
A
ASP
4
n
4
ASP
4
A
ASP
5
n
5
ASP
5
A
PRO
6
n
6
PRO
6
A
ALA
7
n
7
ALA
7
A
LYS
8
n
8
LYS
8
A
ALA
9
n
9
ALA
9
A
ALA
10
n
10
ALA
10
A
PHE
11
n
11
PHE
11
A
ASN
12
n
12
ASN
12
A
SER
13
n
13
SER
13
A
LEU
14
n
14
LEU
14
A
GLN
15
n
15
GLN
15
A
ALA
16
n
16
ALA
16
A
SER
17
n
17
SER
17
A
ALA
18
n
18
ALA
18
A
THR
19
n
19
THR
19
A
GLU
20
n
20
GLU
20
A
TYR
21
n
21
TYR
21
A
ILE
22
n
22
ILE
22
A
GLY
23
n
23
GLY
23
A
TYR
24
n
24
TYR
24
A
ALA
25
n
25
ALA
25
A
TRP
26
n
26
TRP
26
A
ALA
27
n
27
ALA
27
A
MET
28
n
28
MET
28
A
VAL
29
n
29
VAL
29
A
VAL
30
n
30
VAL
30
A
VAL
31
n
31
VAL
31
A
ILE
32
n
32
ILE
32
A
VAL
33
n
33
VAL
33
A
GLY
34
n
34
GLY
34
A
ALA
35
n
35
ALA
35
A
THR
36
n
36
THR
36
A
ILE
37
n
37
ILE
37
A
GLY
38
n
38
GLY
38
A
ILE
39
n
39
ILE
39
A
LYS
40
n
40
LYS
40
A
LEU
41
n
41
LEU
41
A
PHE
42
n
42
PHE
42
A
LYS
43
n
43
LYS
43
A
LYS
44
n
44
LYS
44
A
PHE
45
n
45
PHE
45
A
THR
46
n
46
THR
46
A
SER
47
n
47
SER
47
A
LYS
48
n
48
LYS
48
A
ALA
49
n
49
ALA
49
A
SER
50
n
50
SER
50
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
3
A
A
O
HG1
LYS
THR
43
46
1.60
4
A
A
O
H
ALA
SER
9
13
1.60
11
A
A
O
H
PHE
THR
42
46
1.57
15
A
A
O
H
ILE
ALA
22
25
1.60
19
A
A
O
H
ALA
SER
9
13
1.60
20
A
A
O
H
THR
LYS
36
40
1.59
21
A
A
O
H
ALA
TYR
18
21
1.55
25
A
A
O
H
VAL
VAL
29
33
1.57
1
A
GLU
2
-67.91
63.64
1
A
ASP
5
47.83
94.18
1
A
ALA
7
-86.75
-85.91
1
A
SER
17
-93.24
42.38
1
A
ALA
18
-100.36
69.62
2
A
ASP
4
-158.77
-67.70
2
A
ASP
5
-179.65
79.51
2
A
ALA
18
-93.17
47.89
2
A
ALA
49
-39.47
111.13
3
A
GLU
2
174.34
50.80
3
A
ASP
4
-103.93
-62.70
3
A
SER
17
-151.43
27.11
3
A
THR
19
-97.63
30.57
3
A
ALA
49
68.27
124.72
4
A
GLU
2
67.39
119.32
4
A
ASP
5
-46.37
101.92
4
A
SER
17
-136.08
-54.41
4
A
ALA
18
-100.66
63.81
5
A
ASP
5
63.20
140.11
5
A
ALA
18
-96.18
49.92
6
A
GLU
2
176.01
130.45
6
A
ASP
4
-107.86
44.05
6
A
ASP
5
-176.35
79.48
6
A
ALA
7
85.96
-48.98
6
A
ALA
18
-100.47
64.50
6
A
ALA
49
70.70
174.26
7
A
GLU
2
174.76
46.74
7
A
ASP
4
-130.35
-68.01
7
A
ASP
5
-169.77
116.29
7
A
THR
19
-94.83
37.73
7
A
SER
47
-159.23
40.01
7
A
ALA
49
53.63
87.89
8
A
GLU
2
66.76
99.18
8
A
ASP
5
-42.62
99.47
8
A
ALA
18
-100.34
66.39
8
A
SER
47
-105.67
52.44
9
A
ASP
4
-108.49
-73.80
9
A
ASP
5
62.10
120.93
9
A
LYS
8
33.82
74.59
9
A
ALA
9
-64.35
-73.44
10
A
ASP
4
-68.50
63.50
10
A
ALA
9
-38.23
-78.65
10
A
THR
19
-98.99
34.33
10
A
SER
47
49.03
24.85
10
A
ALA
49
-43.54
156.23
11
A
GLU
2
177.94
42.51
11
A
ASP
5
179.50
84.35
11
A
ALA
7
85.78
-48.22
11
A
ALA
9
-53.12
-73.20
11
A
SER
17
-118.91
55.54
11
A
ILE
32
-100.45
-62.63
11
A
SER
47
-96.72
35.95
11
A
ALA
49
167.46
54.35
12
A
GLU
2
61.94
-179.61
12
A
ASP
4
-140.07
58.82
12
A
ASP
5
-178.85
94.84
12
A
LYS
8
37.07
81.37
12
A
THR
46
38.84
44.49
12
A
ALA
49
-41.15
-84.73
13
A
ASP
4
-116.21
75.74
13
A
SER
17
-165.12
67.92
13
A
ALA
18
-89.63
42.12
13
A
THR
46
39.58
34.51
13
A
ALA
49
-43.98
160.50
14
A
GLU
2
176.92
110.12
14
A
ASP
5
71.68
123.29
14
A
ALA
9
-58.66
-84.53
14
A
SER
17
-158.02
69.05
14
A
LYS
44
-92.97
-62.31
14
A
ALA
49
56.01
72.96
15
A
ASP
4
-147.99
56.81
15
A
ASP
5
-179.81
99.92
15
A
LYS
8
-122.22
-54.63
15
A
ALA
49
54.73
72.83
16
A
GLU
2
57.99
76.18
16
A
ASP
4
-122.88
-73.18
16
A
ASP
5
-54.87
107.08
16
A
ALA
7
84.06
-46.73
16
A
LYS
8
-135.57
-54.62
16
A
ALA
9
-37.75
-82.55
16
A
SER
17
-141.91
-58.05
16
A
ALA
49
53.27
-87.77
17
A
GLU
2
40.98
95.10
17
A
ASP
4
-161.01
86.19
17
A
ASP
5
-173.00
77.08
17
A
LYS
8
31.97
37.42
17
A
LYS
44
-95.48
-74.12
18
A
ASP
5
61.31
120.96
18
A
SER
47
-161.78
-52.65
18
A
LYS
48
-64.34
69.54
18
A
ALA
49
-171.81
143.13
19
A
GLU
2
-49.39
156.28
19
A
ASP
5
58.54
97.96
19
A
ALA
49
164.74
160.27
20
A
GLU
2
53.83
95.88
20
A
ASP
4
-97.19
-76.85
20
A
ASP
5
-176.93
75.05
20
A
ALA
7
-96.96
49.63
20
A
LYS
8
34.52
74.83
20
A
ALA
18
-93.70
50.48
20
A
ALA
49
-49.76
161.39
21
A
GLU
2
-44.03
106.38
21
A
ASP
4
-119.12
64.61
21
A
ASP
5
-176.18
142.32
21
A
ALA
18
-101.03
72.92
21
A
ALA
49
56.57
-176.67
22
A
GLU
2
172.30
125.39
22
A
ASP
5
-155.86
71.30
22
A
ALA
9
-75.88
-70.64
22
A
SER
17
-78.96
-76.41
22
A
THR
19
-95.48
35.09
22
A
SER
47
-172.11
51.32
22
A
ALA
49
-43.65
92.91
23
A
ASP
4
-163.72
86.41
23
A
ASP
5
58.45
91.11
23
A
ALA
7
-93.24
43.75
23
A
LYS
8
28.46
63.23
23
A
ALA
9
-100.33
-85.70
23
A
TYR
24
-140.36
-44.79
23
A
ALA
49
53.60
-87.20
24
A
ASP
4
-114.41
79.07
24
A
ASP
5
57.05
95.20
24
A
ALA
7
82.63
-46.52
24
A
LYS
8
-120.97
-66.77
24
A
ALA
9
-43.25
-89.08
24
A
SER
17
-146.74
28.63
24
A
TYR
24
-142.17
-45.73
24
A
LYS
44
-49.37
-70.37
24
A
ALA
49
-43.75
-71.58
25
A
GLU
2
56.10
177.53
25
A
ASP
5
178.59
85.90
25
A
LYS
8
34.49
75.74
25
A
ALA
9
-81.15
-73.21
25
A
ALA
18
-99.71
39.57
25
A
TRP
26
-90.85
-64.10
25
A
LYS
44
-58.91
-75.41
25
A
THR
46
-77.62
-71.62
25
A
ALA
49
43.58
-168.19
model building
X-PLOR
3.1
refinement
X-PLOR
3.1
phasing
X-PLOR
3.1
SOLUTION NMR STRUCTURES OF THE MAJOR COAT PROTEIN OF FILAMENTOUS BACTERIOPHAGE M13 SOLUBILIZED IN SODIUM DODECYL SULPHATE MICELLES, 25 LOWEST ENERGY STRUCTURES
1
Y
N
A
LYS
8
A
LYS
8
HELX_P
A
GLN
15
A
GLN
15
1
1
8
A
TYR
24
A
TYR
24
HELX_P
A
THR
46
A
THR
46
1
2
23
VIRAL PROTEIN
MAJOR COAT PROTEIN, BACTERIOPHAGE M13, ASSEMBLY, MICELLE, MEMBRANE, Viral protein
COATB_BPM13
UNP
1
1
P69541
MKKSLVLKASVAVATLVPMLSFAAEGDDPAKAAFNSLQASATEYIGYAWAMVVVIVGATIGIKLFKKFTSKAS
24
73
2CPS
1
50
P69541
A
1
1
50
1
P 1