1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Tsuda, K.
Muto, Y.
Inoue, M.
Kigawa, T.
Terada, T.
Shirouzu, M.
Yokoyama, S.
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
solution structure of RNA binding domain in eukaryotic translation initiation factor 3 subunit 4
10.2210/pdb2cq0/pdb
pdb_00002cq0
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
11137.155
Eukaryotic translation initiation factor 3 subunit 4
RNA recognition motif
1
man
polymer
eIF-3 delta, eIF3 p44, eIF-3 RNA-binding subunit, eIF3 p42, eIF3g
no
no
GSSGSSGPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGF
GYDHLILNVEWAKPSTNSGPSSG
GSSGSSGPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGF
GYDHLILNVEWAKPSTNSGPSSG
A
hss001003366
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
sample
Cell-free protein syntheis
EIF3S4
9606
Homo sapiens
PLASMID
P040510-15
RIKEN Structural Genomics/Proteomics Initiative
RSGI
NPPSFA, National Project on Protein Structural and Functional Analyses
database_2
pdbx_nmr_software
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2005-11-19
1
1
2008-04-30
1
2
2011-07-13
1
3
2022-03-09
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
_struct_ref_seq_dif.details
Y
PDBJ
Y
PDBJ
2005-05-19
REL
REL
target function, structures with the lowest energy, structures with the least restraint violations
100
20
3D_15N-separated_NOESY
3D_13C-separated_NOESY
120mM
7.0
ambient
298
K
torsion angle dynamics,
restrainted molecular dynamics
1
lowest energy
1.15mM 13C/15N-PROTEIN, 20mM d-Tris-HCl (pH 7.0), 100mM NaCl, 1mM d-DTT, 0.02% NaN3, 10% D2O
90% H2O/10% D2O
Bruker
collection
XwinNMR
3.5
Delaglio, F
processing
NMRPipe
20030801
Johnson, B.A
data analysis
NMRView
5.0.4
Kobayashi, N
data analysis
KUJIRA
0.9297
Guntert, P
structure solution
CYANA
2.0.17
Guntert, P
refinement
CYANA
2.0.17
800
Bruker
AVANCE
GLY
224
n
1
GLY
224
A
SER
225
n
2
SER
225
A
SER
226
n
3
SER
226
A
GLY
227
n
4
GLY
227
A
SER
228
n
5
SER
228
A
SER
229
n
6
SER
229
A
GLY
230
n
7
GLY
230
A
PRO
231
n
8
PRO
231
A
ASN
232
n
9
ASN
232
A
ARG
233
n
10
ARG
233
A
ARG
234
n
11
ARG
234
A
ALA
235
n
12
ALA
235
A
ASP
236
n
13
ASP
236
A
ASP
237
n
14
ASP
237
A
ASN
238
n
15
ASN
238
A
ALA
239
n
16
ALA
239
A
THR
240
n
17
THR
240
A
ILE
241
n
18
ILE
241
A
ARG
242
n
19
ARG
242
A
VAL
243
n
20
VAL
243
A
THR
244
n
21
THR
244
A
ASN
245
n
22
ASN
245
A
LEU
246
n
23
LEU
246
A
SER
247
n
24
SER
247
A
GLU
248
n
25
GLU
248
A
ASP
249
n
26
ASP
249
A
THR
250
n
27
THR
250
A
ARG
251
n
28
ARG
251
A
GLU
252
n
29
GLU
252
A
THR
253
n
30
THR
253
A
ASP
254
n
31
ASP
254
A
LEU
255
n
32
LEU
255
A
GLN
256
n
33
GLN
256
A
GLU
257
n
34
GLU
257
A
LEU
258
n
35
LEU
258
A
PHE
259
n
36
PHE
259
A
ARG
260
n
37
ARG
260
A
PRO
261
n
38
PRO
261
A
PHE
262
n
39
PHE
262
A
GLY
263
n
40
GLY
263
A
SER
264
n
41
SER
264
A
ILE
265
n
42
ILE
265
A
SER
266
n
43
SER
266
A
ARG
267
n
44
ARG
267
A
ILE
268
n
45
ILE
268
A
TYR
269
n
46
TYR
269
A
LEU
270
n
47
LEU
270
A
ALA
271
n
48
ALA
271
A
LYS
272
n
49
LYS
272
A
ASP
273
n
50
ASP
273
A
LYS
274
n
51
LYS
274
A
THR
275
n
52
THR
275
A
THR
276
n
53
THR
276
A
GLY
277
n
54
GLY
277
A
GLN
278
n
55
GLN
278
A
SER
279
n
56
SER
279
A
LYS
280
n
57
LYS
280
A
GLY
281
n
58
GLY
281
A
PHE
282
n
59
PHE
282
A
ALA
283
n
60
ALA
283
A
PHE
284
n
61
PHE
284
A
ILE
285
n
62
ILE
285
A
SER
286
n
63
SER
286
A
PHE
287
n
64
PHE
287
A
HIS
288
n
65
HIS
288
A
ARG
289
n
66
ARG
289
A
ARG
290
n
67
ARG
290
A
GLU
291
n
68
GLU
291
A
ASP
292
n
69
ASP
292
A
ALA
293
n
70
ALA
293
A
ALA
294
n
71
ALA
294
A
ARG
295
n
72
ARG
295
A
ALA
296
n
73
ALA
296
A
ILE
297
n
74
ILE
297
A
ALA
298
n
75
ALA
298
A
GLY
299
n
76
GLY
299
A
VAL
300
n
77
VAL
300
A
SER
301
n
78
SER
301
A
GLY
302
n
79
GLY
302
A
PHE
303
n
80
PHE
303
A
GLY
304
n
81
GLY
304
A
TYR
305
n
82
TYR
305
A
ASP
306
n
83
ASP
306
A
HIS
307
n
84
HIS
307
A
LEU
308
n
85
LEU
308
A
ILE
309
n
86
ILE
309
A
LEU
310
n
87
LEU
310
A
ASN
311
n
88
ASN
311
A
VAL
312
n
89
VAL
312
A
GLU
313
n
90
GLU
313
A
TRP
314
n
91
TRP
314
A
ALA
315
n
92
ALA
315
A
LYS
316
n
93
LYS
316
A
PRO
317
n
94
PRO
317
A
SER
318
n
95
SER
318
A
THR
319
n
96
THR
319
A
ASN
320
n
97
ASN
320
A
SER
321
n
98
SER
321
A
GLY
322
n
99
GLY
322
A
PRO
323
n
100
PRO
323
A
SER
324
n
101
SER
324
A
SER
325
n
102
SER
325
A
GLY
326
n
103
GLY
326
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ARG
267
A
N
ARG
44
A
O
SER
286
A
O
SER
63
A
O
ALA
283
A
O
ALA
60
A
N
VAL
243
A
N
VAL
20
A
N
ARG
242
A
N
ARG
19
A
O
GLU
313
A
O
GLU
90
A
N
TYR
305
A
N
TYR
82
A
O
LEU
308
A
O
LEU
85
1
A
PRO
231
-45.76
101.44
1
A
ASN
232
-57.59
97.67
1
A
ASP
237
-134.03
-45.24
1
A
ASN
238
-48.11
152.26
1
A
ASN
245
70.45
52.07
1
A
PRO
261
-48.02
-17.23
1
A
ILE
297
-37.97
-33.72
1
A
SER
318
-93.21
45.23
2
A
PRO
261
-48.00
-17.14
2
A
LYS
280
-46.87
-73.77
2
A
ILE
297
-39.94
-35.16
2
A
SER
301
-59.81
104.47
3
A
SER
229
-35.75
112.76
3
A
ASN
232
-100.52
42.93
3
A
ALA
235
-161.97
106.82
3
A
ASP
237
-121.31
-71.33
3
A
ASN
245
70.79
38.41
3
A
PRO
261
-48.01
-17.21
3
A
LYS
280
-68.77
-75.00
3
A
ILE
297
-35.04
-33.20
3
A
LYS
316
-41.61
150.35
3
A
PRO
317
-77.07
44.59
3
A
SER
318
-44.49
108.18
4
A
PRO
261
-47.96
-17.24
4
A
ILE
297
-39.86
-34.65
4
A
HIS
307
45.91
27.25
4
A
PRO
317
-47.01
156.74
5
A
ASN
232
-92.56
-61.85
5
A
ASN
245
73.58
38.43
5
A
PRO
261
-47.98
-18.29
5
A
LYS
280
-63.58
-72.90
5
A
ALA
296
-64.50
-70.51
5
A
ILE
297
-35.08
-34.72
5
A
HIS
307
47.62
29.98
5
A
SER
318
-129.17
-53.38
5
A
SER
321
-39.90
127.35
6
A
ASN
238
-39.85
159.84
6
A
ASN
245
73.32
39.06
6
A
PRO
261
-47.93
-17.23
6
A
ASP
273
-68.49
-178.61
6
A
ILE
297
-35.88
-35.95
7
A
PRO
231
-45.51
166.99
7
A
ASP
237
35.19
38.79
7
A
ASN
245
71.59
43.77
7
A
PRO
261
-47.97
-17.93
7
A
THR
275
-55.14
-72.38
7
A
ILE
297
-34.48
-32.97
8
A
SER
228
-46.97
171.26
8
A
ARG
234
-127.69
-62.21
8
A
ALA
235
-35.40
-38.84
8
A
PRO
261
-47.94
-17.18
8
A
ILE
297
-36.91
-34.12
8
A
ALA
315
-69.89
-71.31
8
A
SER
321
-131.20
-48.65
8
A
SER
324
-45.74
152.38
9
A
SER
226
-56.12
89.81
9
A
SER
229
-59.85
174.66
9
A
ASP
237
34.51
37.86
9
A
PRO
261
-47.94
-17.37
9
A
ILE
297
-35.97
-33.52
9
A
HIS
307
47.40
26.60
9
A
THR
319
36.10
40.01
10
A
SER
228
-40.19
106.87
10
A
PRO
261
-47.96
-17.16
10
A
SER
279
-36.53
128.01
10
A
LYS
280
-57.95
-74.33
10
A
ILE
297
-35.71
-32.38
11
A
ASP
237
-65.87
90.46
11
A
ASN
245
74.05
38.28
11
A
PRO
261
-47.88
-17.34
11
A
ASP
273
-67.29
-177.87
11
A
LYS
280
-62.13
-74.78
11
A
ILE
297
-38.31
-32.22
11
A
SER
324
-59.20
99.04
12
A
SER
226
36.30
46.91
12
A
ASP
236
-38.90
134.16
12
A
ASP
237
-123.04
-61.58
12
A
ASN
245
74.53
48.65
12
A
PRO
261
-47.93
-17.59
12
A
LYS
316
-174.84
105.01
13
A
ARG
234
35.44
51.07
13
A
PRO
261
-47.93
-18.57
13
A
THR
275
-52.49
-72.49
13
A
LYS
280
-63.38
-74.94
13
A
ILE
297
-38.20
-34.52
13
A
HIS
307
48.74
26.98
14
A
SER
226
-122.99
-50.69
14
A
ASP
237
-120.06
-54.88
14
A
ASN
245
73.13
41.96
14
A
PRO
261
-47.87
-17.42
14
A
LYS
280
-82.05
-74.90
14
A
ILE
297
-39.92
-37.01
15
A
ARG
234
-89.23
47.36
15
A
ASN
245
73.59
43.94
15
A
LYS
280
-55.10
-74.86
15
A
ILE
297
-36.03
-32.42
15
A
PRO
317
-44.41
103.40
16
A
ASN
232
37.35
50.91
16
A
PRO
261
-47.91
-17.98
16
A
LYS
280
-66.68
-74.66
16
A
ILE
297
-35.42
-37.73
16
A
HIS
307
48.80
26.61
16
A
SER
318
-35.63
141.86
17
A
ASN
245
72.28
43.36
17
A
PRO
261
-47.93
-17.60
17
A
ALA
296
-60.75
-71.06
17
A
SER
301
-48.90
104.47
17
A
HIS
307
37.91
31.31
17
A
SER
318
-86.52
48.80
17
A
THR
319
-81.95
41.54
17
A
PRO
323
-45.56
101.75
18
A
ASP
236
-168.61
114.36
18
A
ASP
237
-100.74
-60.61
18
A
ASN
245
72.32
41.90
18
A
PRO
261
-47.94
-19.12
18
A
ASP
273
-55.42
-176.30
18
A
THR
275
-67.08
-73.59
18
A
ALA
296
-64.22
-70.91
18
A
SER
301
-47.92
108.47
18
A
HIS
307
38.23
30.94
18
A
PRO
317
-44.81
161.66
19
A
ASN
245
73.77
49.78
19
A
PRO
261
-48.03
-17.55
19
A
THR
275
-74.67
-73.94
19
A
LYS
280
-61.47
-74.38
19
A
ILE
297
-34.30
-34.16
20
A
ARG
234
-162.64
109.63
20
A
PRO
261
-48.00
-18.01
20
A
ASP
273
-61.64
-179.92
20
A
ALA
296
-64.43
-71.01
20
A
HIS
307
37.73
31.32
20
A
PRO
317
-45.54
153.89
20
A
ASN
320
-80.33
47.18
solution structure of RNA binding domain in eukaryotic translation initiation factor 3 subunit 4
1
N
N
A
ARG
251
A
ARG
28
HELX_P
A
GLU
257
A
GLU
34
1
1
7
A
ARG
289
A
ARG
66
HELX_P
A
VAL
300
A
VAL
77
1
2
12
TRANSCRIPTION
RRM domain, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, TRANSCRIPTION
IF34_HUMAN
UNP
1
231
O75821
PNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLIL
NVEWAKPSTN
231
320
2CQ0
231
320
O75821
A
1
8
97
1
cloning artifact
GLY
224
2CQ0
A
O75821
UNP
1
1
cloning artifact
SER
225
2CQ0
A
O75821
UNP
2
1
cloning artifact
SER
226
2CQ0
A
O75821
UNP
3
1
cloning artifact
GLY
227
2CQ0
A
O75821
UNP
4
1
cloning artifact
SER
228
2CQ0
A
O75821
UNP
5
1
cloning artifact
SER
229
2CQ0
A
O75821
UNP
6
1
cloning artifact
GLY
230
2CQ0
A
O75821
UNP
7
1
cloning artifact
SER
321
2CQ0
A
O75821
UNP
98
1
cloning artifact
GLY
322
2CQ0
A
O75821
UNP
99
1
cloning artifact
PRO
323
2CQ0
A
O75821
UNP
100
1
cloning artifact
SER
324
2CQ0
A
O75821
UNP
101
1
cloning artifact
SER
325
2CQ0
A
O75821
UNP
102
1
cloning artifact
GLY
326
2CQ0
A
O75821
UNP
103
4
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
265
A
ILE
42
A
LYS
272
A
LYS
49
A
SER
279
A
SER
56
A
PHE
287
A
PHE
64
A
ALA
239
A
ALA
16
A
THR
244
A
THR
21
A
ASN
311
A
ASN
88
A
TRP
314
A
TRP
91
A
GLY
304
A
GLY
81
A
TYR
305
A
TYR
82
A
LEU
308
A
LEU
85
A
ILE
309
A
ILE
86