1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Suzuki, S.
Muto, Y.
Inoue, M.
Kigawa, T.
Terada, T.
Shirouzu, M.
Yokoyama, S.
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
Solution structure of the S4 domain of U3 small nucleolar ribonucleoprotein protein IMP3 homolog
10.2210/pdb2cqj/pdb
pdb_00002cqj
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
7533.541
U3 small nucleolar ribonucleoprotein protein IMP3 homolog
S4 domain
1
man
polymer
BRMS2
no
no
GSSGSSGRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKISGPSSG
GSSGSSGRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKISGPSSG
A
hss001002801.1
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
sample
Cell-free protein synthesis
C15orf12
9606
Homo sapiens
Plasmid
P041213-13
RIKEN Structural Genomics/Proteomics Initiative
RSGI
NPPSFA, National Project on Protein Structural and Functional Analyses
database_2
pdbx_nmr_software
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2005-11-20
1
1
2008-04-30
1
2
2011-07-13
1
3
2022-03-09
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
_struct_ref_seq_dif.details
Y
PDBJ
Y
PDBJ
2005-05-20
REL
REL
The structure was determined using triple-resonance NMR spectroscopy.
target function
100
20
3D_15N-separated_NOESY
3D_13C-separated_NOESY
120mM
7.0
ambient
283
K
torsion angle dyanamics, simulated annealing
1
lowest energy
1.1mM 13C/15N-PROTEIN; 20mM d-Tris-HCl; 100mM NaCl; 1mM d-DTT; 0.02% NaN3
90% H2O/10% D2O
Bruker
collection
XwinNMR
3.5
Delaglio, F.
processing
NMRPipe
20031121
Johnson, B.A.
data analysis
NMRView
5.0.4
Kobayashi, N.
data analysis
KUJIRA
0.9295
Yokochi, M.
data analysis
Olivia
1.10.5
Guntert, P.
structure solution
CYANA
2.0.17
Guntert, P.
refinement
CYANA
2.0.17
700
Bruker
AVANCE
GLY
102
n
1
GLY
102
A
SER
103
n
2
SER
103
A
SER
104
n
3
SER
104
A
GLY
105
n
4
GLY
105
A
SER
106
n
5
SER
106
A
SER
107
n
6
SER
107
A
GLY
108
n
7
GLY
108
A
ARG
109
n
8
ARG
109
A
ARG
110
n
9
ARG
110
A
LEU
111
n
10
LEU
111
A
PRO
112
n
11
PRO
112
A
THR
113
n
12
THR
113
A
VAL
114
n
13
VAL
114
A
LEU
115
n
14
LEU
115
A
LEU
116
n
15
LEU
116
A
LYS
117
n
16
LYS
117
A
LEU
118
n
17
LEU
118
A
ARG
119
n
18
ARG
119
A
MET
120
n
19
MET
120
A
ALA
121
n
20
ALA
121
A
GLN
122
n
21
GLN
122
A
HIS
123
n
22
HIS
123
A
LEU
124
n
23
LEU
124
A
GLN
125
n
24
GLN
125
A
ALA
126
n
25
ALA
126
A
ALA
127
n
26
ALA
127
A
VAL
128
n
27
VAL
128
A
ALA
129
n
28
ALA
129
A
PHE
130
n
29
PHE
130
A
VAL
131
n
30
VAL
131
A
GLU
132
n
31
GLU
132
A
GLN
133
n
32
GLN
133
A
GLY
134
n
33
GLY
134
A
HIS
135
n
34
HIS
135
A
VAL
136
n
35
VAL
136
A
ARG
137
n
36
ARG
137
A
VAL
138
n
37
VAL
138
A
GLY
139
n
38
GLY
139
A
PRO
140
n
39
PRO
140
A
ASP
141
n
40
ASP
141
A
VAL
142
n
41
VAL
142
A
VAL
143
n
42
VAL
143
A
THR
144
n
43
THR
144
A
ASP
145
n
44
ASP
145
A
PRO
146
n
45
PRO
146
A
ALA
147
n
46
ALA
147
A
PHE
148
n
47
PHE
148
A
LEU
149
n
48
LEU
149
A
VAL
150
n
49
VAL
150
A
THR
151
n
50
THR
151
A
ARG
152
n
51
ARG
152
A
SER
153
n
52
SER
153
A
MET
154
n
53
MET
154
A
GLU
155
n
54
GLU
155
A
ASP
156
n
55
ASP
156
A
PHE
157
n
56
PHE
157
A
VAL
158
n
57
VAL
158
A
THR
159
n
58
THR
159
A
TRP
160
n
59
TRP
160
A
VAL
161
n
60
VAL
161
A
ASP
162
n
61
ASP
162
A
SER
163
n
62
SER
163
A
SER
164
n
63
SER
164
A
LYS
165
n
64
LYS
165
A
ILE
166
n
65
ILE
166
A
SER
167
n
66
SER
167
A
GLY
168
n
67
GLY
168
A
PRO
169
n
68
PRO
169
A
SER
170
n
69
SER
170
A
SER
171
n
70
SER
171
A
GLY
172
n
71
GLY
172
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ARG
109
A
N
ARG
8
A
O
VAL
150
A
O
VAL
49
A
N
ARG
137
A
N
ARG
36
A
O
THR
159
A
O
THR
58
1
A
ARG
119
48.73
29.43
1
A
PRO
140
-69.71
3.38
1
A
PHE
157
-93.12
33.35
1
A
ILE
166
-39.07
130.40
2
A
GLN
122
-80.50
-70.50
2
A
PRO
140
-69.74
3.42
3
A
ARG
119
47.52
27.51
3
A
PRO
140
-69.81
3.48
3
A
PHE
157
-91.67
34.49
3
A
SER
163
-108.06
47.71
3
A
ILE
166
-36.07
145.20
4
A
PRO
140
-69.76
3.38
4
A
PHE
157
-91.78
34.48
4
A
SER
163
-113.88
63.82
4
A
SER
171
-39.00
137.56
5
A
GLN
122
-90.52
-68.20
5
A
PRO
140
-69.74
3.50
5
A
ILE
166
-33.95
140.71
6
A
SER
107
-104.17
44.38
6
A
ARG
119
48.80
25.11
6
A
GLN
122
-100.49
-74.25
6
A
PRO
140
-69.76
3.70
6
A
ARG
152
-34.07
-70.06
6
A
PHE
157
-86.49
33.70
6
A
PRO
169
-69.79
99.98
7
A
GLN
122
-90.76
-66.16
7
A
PRO
140
-69.83
3.47
7
A
SER
164
-50.60
-74.41
7
A
PRO
169
-69.81
-178.57
8
A
SER
106
-65.16
93.97
8
A
ARG
119
48.60
27.37
8
A
GLN
122
-89.65
-70.66
8
A
PRO
140
-69.84
3.58
8
A
SER
171
-59.42
106.09
9
A
GLN
122
-93.03
-68.22
9
A
PRO
140
-69.82
3.64
9
A
LYS
165
-102.21
40.83
9
A
SER
170
-39.06
152.36
10
A
PRO
140
-69.79
3.60
10
A
PHE
157
-97.13
31.20
10
A
SER
171
-125.47
-52.01
11
A
GLN
122
-96.81
-67.74
11
A
PRO
140
-69.69
3.39
11
A
SER
170
-37.78
121.73
12
A
ARG
119
45.78
29.30
12
A
PRO
140
-69.74
3.55
13
A
GLN
122
-62.46
-72.84
13
A
PRO
140
-69.79
3.47
13
A
ARG
152
-37.77
-30.78
13
A
SER
163
-101.20
40.71
13
A
ILE
166
-37.36
126.37
14
A
ARG
119
47.95
26.99
14
A
GLN
122
-92.20
-70.06
14
A
PRO
140
-69.73
3.49
14
A
PHE
157
-96.68
32.36
14
A
SER
170
-41.39
151.54
15
A
GLN
122
-92.91
-66.71
15
A
PRO
140
-69.84
3.56
15
A
SER
163
-109.80
66.59
15
A
SER
164
-87.51
-75.15
15
A
ILE
166
-33.43
112.69
16
A
ARG
119
48.00
25.15
16
A
PRO
140
-69.79
3.73
16
A
ILE
166
-106.42
73.33
16
A
PRO
169
-69.72
84.84
17
A
ARG
119
48.77
25.78
17
A
PRO
140
-69.72
3.67
17
A
VAL
161
-37.17
-32.69
18
A
ARG
119
48.84
29.48
18
A
PRO
140
-69.80
3.53
18
A
PHE
157
-84.59
33.19
18
A
ASP
162
-121.86
-54.39
18
A
PRO
169
-69.78
2.82
19
A
SER
107
-127.60
-65.44
19
A
ARG
119
44.95
28.64
19
A
PRO
140
-69.85
3.62
19
A
PHE
157
-95.01
30.81
19
A
SER
163
-87.67
38.26
20
A
ARG
119
49.46
26.93
20
A
GLN
122
-95.12
-63.94
20
A
PRO
140
-69.65
3.45
20
A
SER
163
-103.70
51.42
Solution structure of the S4 domain of U3 small nucleolar ribonucleoprotein protein IMP3 homolog
1
N
N
A
LEU
111
A
LEU
10
HELX_P
A
LYS
117
A
LYS
16
1
1
7
A
LEU
124
A
LEU
23
HELX_P
A
GLU
132
A
GLU
31
1
2
9
A
ARG
152
A
ARG
51
HELX_P
A
GLU
155
A
GLU
54
1
3
4
RNA BINDING PROTEIN
S4 domain, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, RNA BINDING PROTEIN
IMP3_HUMAN
UNP
1
109
Q9NV31
RRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKI
109
166
2CQJ
109
166
Q9NV31
A
1
8
65
1
cloning artifact
GLY
102
2CQJ
A
Q9NV31
UNP
1
1
cloning artifact
SER
103
2CQJ
A
Q9NV31
UNP
2
1
cloning artifact
SER
104
2CQJ
A
Q9NV31
UNP
3
1
cloning artifact
GLY
105
2CQJ
A
Q9NV31
UNP
4
1
cloning artifact
SER
106
2CQJ
A
Q9NV31
UNP
5
1
cloning artifact
SER
107
2CQJ
A
Q9NV31
UNP
6
1
cloning artifact
GLY
108
2CQJ
A
Q9NV31
UNP
7
1
cloning artifact
SER
167
2CQJ
A
Q9NV31
UNP
66
1
cloning artifact
GLY
168
2CQJ
A
Q9NV31
UNP
67
1
cloning artifact
PRO
169
2CQJ
A
Q9NV31
UNP
68
1
cloning artifact
SER
170
2CQJ
A
Q9NV31
UNP
69
1
cloning artifact
SER
171
2CQJ
A
Q9NV31
UNP
70
1
cloning artifact
GLY
172
2CQJ
A
Q9NV31
UNP
71
2
3
anti-parallel
anti-parallel
anti-parallel
A
ARG
109
A
ARG
8
A
ARG
110
A
ARG
9
A
LEU
149
A
LEU
48
A
THR
151
A
THR
50
A
ASP
141
A
ASP
40
A
VAL
142
A
VAL
41
A
VAL
136
A
VAL
35
A
VAL
138
A
VAL
37
A
VAL
158
A
VAL
57
A
TRP
160
A
TRP
59
1
P 1