0.022599 0.000000 0.000000 0.000000 0.017850 0.000000 0.000000 0.000000 0.012399 0.00000 0.00000 0.00000 Yin, J. Bergmann, E.M. Cherney, M.M. Lall, M.S. Jain, R.P. Vederas, J.C. James, M.N.G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 44.249 56.022 80.649 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C11 H13 N O4 223.225 N-[(BENZYLOXY)CARBONYL]-L-ALANINE N-BENZYLOXYCARBONYL-L-SERINE-BETALACTONE non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N O N 75 N C N 76 N O N 77 S C N 78 N C N 79 N N N 80 N C N 81 N O N 82 N O N 83 N C Y 84 N C Y 85 N C Y 86 N C Y 87 N C Y 88 N C Y 89 N C N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N N N 104 R C N 105 N C N 106 N O N 107 N C N 108 N S N 109 N O N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N N N 118 S C N 119 N C N 120 N O N 121 N C N 122 N C N 123 N C N 124 N O N 125 N N N 126 N O N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C N 142 N C N 143 N C N 144 N O N 145 N O N 146 N O N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N N N 157 N C N 158 N C N 159 N O N 160 N O N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N N N 167 S C N 168 N C N 169 N O N 170 N C Y 171 N C Y 172 N N Y 173 N C Y 174 N C Y 175 N N N 176 N O N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N O N 188 N H N 189 N H N 190 N N N 191 S C N 192 N C N 193 N O N 194 S C N 195 N C N 196 N C N 197 N C N 198 N O N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N N N 213 S C N 214 N C N 215 N O N 216 N C N 217 N C N 218 N C N 219 N C N 220 N O N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N N N 235 S C N 236 N C N 237 N O N 238 N C N 239 N C N 240 N C N 241 N C N 242 N N N 243 N O N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N N N 260 S C N 261 N C N 262 N O N 263 N C N 264 N C N 265 N S N 266 N C N 267 N O N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N N N 280 S C N 281 N C N 282 N O N 283 N C Y 284 N C Y 285 N C Y 286 N C Y 287 N C Y 288 N C Y 289 N C N 290 N O N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N N N 303 S C N 304 N C N 305 N O N 306 N C N 307 N C N 308 N C N 309 N O N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N N N 320 S C N 321 N C N 322 N O N 323 N C N 324 N O N 325 N O N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N N N 334 S C N 335 N C N 336 N O N 337 R C N 338 N O N 339 N C N 340 N O N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N N N 351 S C N 352 N C N 353 N O N 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N N Y 359 N C Y 360 N C Y 361 N C Y 362 N C Y 363 N C N 364 N O N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N N N 378 S C N 379 N C N 380 N O N 381 N C Y 382 N C Y 383 N C Y 384 N C Y 385 N C Y 386 N C Y 387 N C N 388 N O N 389 N O N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N N N 402 S C N 403 N C N 404 N O N 405 N C N 406 N C N 407 N C N 408 N O N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N doub N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing Y 88 N doub Y 89 N sing Y 90 N sing N 91 N sing Y 92 N doub N 93 N sing Y 94 N sing N 95 N sing Y 96 N doub N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N doub N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N doub N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N doub N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N doub N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N doub N 165 N sing N 166 N sing N 167 N sing N 168 N sing Y 169 N sing Y 170 N doub Y 171 N doub N 172 N sing Y 173 N sing N 174 N sing Y 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N doub N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N doub N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N doub N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N doub N 273 N sing N 274 N sing N 275 N sing N 276 N sing Y 277 N doub Y 278 N sing Y 279 N sing N 280 N sing Y 281 N doub N 282 N sing Y 283 N doub N 284 N sing Y 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N doub N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N doub N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N doub N 342 N sing N 343 N sing N 344 N sing N 345 N sing Y 346 N doub Y 347 N sing Y 348 N sing N 349 N sing Y 350 N doub Y 351 N sing Y 352 N sing N 353 N sing Y 354 N sing Y 355 N doub N 356 N sing Y 357 N doub N 358 N sing Y 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N doub N 370 N sing N 371 N sing N 372 N sing N 373 N sing Y 374 N doub Y 375 N sing Y 376 N sing N 377 N sing Y 378 N doub N 379 N sing Y 380 N doub N 381 N sing Y 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N doub N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing UK J.MOL.BIOL. JMOBAK 0070 0022-2836 354 854 871 10.1016/j.jmb.2005.09.074 16288920 Dual Modes of Modification of Hepatitis A Virus 3C Protease by a Serine-derived beta-Lactone: Selective Crystallization and Formation of a Functional Catalytic Triad in the Active Site 2005 10.2210/pdb2cxv/pdb pdb_00002cxv 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2000-01-28 ADSC QUANTUM 4 double crystal SINGLE WAVELENGTH M x-ray 1 0.8857 1.0 BL9-2 SSRL 0.8857 SYNCHROTRON SSRL BEAMLINE BL9-2 24119.771 Probable protein P3C 3.4.22.28 C24S 1 man polymer 223.225 N-[(BENZYLOXY)CARBONYL]-L-ALANINE 1 syn non-polymer 18.015 water 247 nat water 3C protease no no STLEIAGLVRKNLVQFGVGEKNGSVRWVMNALGVKDDWLLVPSHAYKFEKDYEMMEFYFNRGGTYYSISAGNVVIQSLDV GFQDVVLMKVPTIPKFRDITQHFIKKGDVPRALNRLATLVTTVNGTPMLISEGPLKMEEKATYVHKKNDGTTVDLTVDQA WRGKGEGLPGMCGGALVSSNQSIQNAILGIHVAGGNSILVAKLVTQEMFQNIDKKIESQ STLEIAGLVRKNLVQFGVGEKNGSVRWVMNALGVKDDWLLVPSHAYKFEKDYEMMEFYFNRGGTYYSISAGNVVIQSLDV GFQDVVLMKVPTIPKFRDITQHFIKKGDVPRALNRLATLVTTVNGTPMLISEGPLKMEEKATYVHKKNDGTTVDLTVDQA WRGKGEGLPGMCGGALVSSNQSIQNAILGIHVAGGNSILVAKLVTQEMFQNIDKKIESQ A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Hepatovirus Hepatitis A virus MBB Escherichia sample 3C 12100 Human hepatitis A virus Hu/Northern Africa/MBB/1978 562 Escherichia coli D1210 plasmid pHAV-3CEX 1 2.1 40.2 VAPOR DIFFUSION, HANGING DROP 7.5 PEG 8000, Tris-HCl, Glycerol, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 297K 297 database_2 struct_conn struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Database references Derived calculations Data collection Refinement description 1 0 2005-12-27 1 1 2008-04-30 1 2 2011-07-13 1 3 2021-11-10 1 4 2023-10-25 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id HAV 3C protease HAV 3C protease HAV 3C protease PDBJ Y PDBJ 2005-07-01 REL REL BBL N-[(BENZYLOXY)CARBONYL]-L-ALANINE HOH water 1HAV PDB ENTRY 1HAV PDB experimental model BZL 901 2 BBL BBL 901 A HOH 1 3 HOH HOH 902 A HOH 2 3 HOH HOH 903 A HOH 3 3 HOH HOH 904 A HOH 4 3 HOH HOH 905 A HOH 5 3 HOH HOH 906 A HOH 6 3 HOH HOH 907 A HOH 7 3 HOH HOH 908 A HOH 8 3 HOH HOH 909 A HOH 9 3 HOH HOH 910 A HOH 10 3 HOH HOH 911 A HOH 11 3 HOH HOH 912 A HOH 12 3 HOH HOH 913 A HOH 13 3 HOH HOH 914 A HOH 14 3 HOH HOH 915 A HOH 15 3 HOH HOH 916 A HOH 16 3 HOH HOH 917 A HOH 17 3 HOH HOH 918 A HOH 18 3 HOH HOH 919 A HOH 19 3 HOH HOH 920 A HOH 20 3 HOH HOH 921 A HOH 21 3 HOH HOH 922 A HOH 22 3 HOH HOH 923 A HOH 23 3 HOH HOH 924 A HOH 24 3 HOH HOH 925 A HOH 25 3 HOH HOH 926 A HOH 26 3 HOH HOH 927 A HOH 27 3 HOH HOH 928 A HOH 28 3 HOH HOH 929 A HOH 29 3 HOH HOH 930 A HOH 30 3 HOH HOH 931 A HOH 31 3 HOH HOH 932 A HOH 32 3 HOH HOH 933 A HOH 33 3 HOH HOH 934 A HOH 34 3 HOH HOH 935 A HOH 35 3 HOH HOH 936 A HOH 36 3 HOH HOH 937 A HOH 37 3 HOH HOH 938 A HOH 38 3 HOH HOH 939 A HOH 39 3 HOH HOH 940 A HOH 40 3 HOH HOH 941 A HOH 41 3 HOH HOH 942 A HOH 42 3 HOH HOH 943 A HOH 43 3 HOH HOH 944 A HOH 44 3 HOH HOH 945 A HOH 45 3 HOH HOH 946 A HOH 46 3 HOH HOH 947 A HOH 47 3 HOH HOH 948 A HOH 48 3 HOH HOH 949 A HOH 49 3 HOH HOH 950 A HOH 50 3 HOH HOH 951 A HOH 51 3 HOH HOH 952 A HOH 52 3 HOH HOH 953 A HOH 53 3 HOH HOH 954 A HOH 54 3 HOH HOH 955 A HOH 55 3 HOH HOH 956 A HOH 56 3 HOH HOH 957 A HOH 57 3 HOH HOH 958 A HOH 58 3 HOH HOH 959 A HOH 59 3 HOH HOH 960 A HOH 60 3 HOH HOH 961 A HOH 61 3 HOH HOH 962 A HOH 62 3 HOH HOH 963 A HOH 63 3 HOH HOH 964 A HOH 64 3 HOH HOH 965 A HOH 65 3 HOH HOH 966 A HOH 66 3 HOH HOH 967 A HOH 67 3 HOH HOH 968 A HOH 68 3 HOH HOH 969 A HOH 69 3 HOH HOH 970 A HOH 70 3 HOH HOH 971 A HOH 71 3 HOH HOH 972 A HOH 72 3 HOH HOH 973 A HOH 73 3 HOH HOH 974 A HOH 74 3 HOH HOH 975 A HOH 75 3 HOH HOH 976 A HOH 76 3 HOH HOH 977 A HOH 77 3 HOH HOH 978 A HOH 78 3 HOH HOH 979 A HOH 79 3 HOH HOH 980 A HOH 80 3 HOH HOH 981 A HOH 81 3 HOH HOH 982 A HOH 82 3 HOH HOH 983 A HOH 83 3 HOH HOH 984 A HOH 84 3 HOH HOH 985 A HOH 85 3 HOH HOH 986 A HOH 86 3 HOH HOH 987 A HOH 87 3 HOH HOH 988 A HOH 88 3 HOH HOH 989 A HOH 89 3 HOH HOH 990 A HOH 90 3 HOH HOH 991 A HOH 91 3 HOH HOH 992 A HOH 92 3 HOH HOH 993 A HOH 93 3 HOH HOH 994 A HOH 94 3 HOH HOH 995 A HOH 95 3 HOH HOH 996 A HOH 96 3 HOH HOH 997 A HOH 97 3 HOH HOH 998 A HOH 98 3 HOH HOH 999 A HOH 99 3 HOH HOH 1000 A HOH 100 3 HOH HOH 1001 A HOH 101 3 HOH HOH 1002 A HOH 102 3 HOH HOH 1003 A HOH 103 3 HOH HOH 1004 A HOH 104 3 HOH HOH 1005 A HOH 105 3 HOH HOH 1006 A HOH 106 3 HOH HOH 1007 A HOH 107 3 HOH HOH 1008 A HOH 108 3 HOH HOH 1009 A HOH 109 3 HOH HOH 1010 A HOH 110 3 HOH HOH 1011 A HOH 111 3 HOH HOH 1012 A HOH 112 3 HOH HOH 1013 A HOH 113 3 HOH HOH 1014 A HOH 114 3 HOH HOH 1015 A HOH 115 3 HOH HOH 1016 A HOH 116 3 HOH HOH 1017 A HOH 117 3 HOH HOH 1018 A HOH 118 3 HOH HOH 1019 A HOH 119 3 HOH HOH 1020 A HOH 120 3 HOH HOH 1021 A HOH 121 3 HOH HOH 1022 A HOH 122 3 HOH HOH 1023 A HOH 123 3 HOH HOH 1024 A HOH 124 3 HOH HOH 1025 A HOH 125 3 HOH HOH 1026 A HOH 126 3 HOH HOH 1027 A HOH 127 3 HOH HOH 1028 A HOH 128 3 HOH HOH 1029 A HOH 129 3 HOH HOH 1030 A HOH 130 3 HOH HOH 1031 A HOH 131 3 HOH HOH 1032 A HOH 132 3 HOH HOH 1033 A HOH 133 3 HOH HOH 1034 A HOH 134 3 HOH HOH 1035 A HOH 135 3 HOH HOH 1036 A HOH 136 3 HOH HOH 1037 A HOH 137 3 HOH HOH 1038 A HOH 138 3 HOH HOH 1039 A HOH 139 3 HOH HOH 1040 A HOH 140 3 HOH HOH 1041 A HOH 141 3 HOH HOH 1042 A HOH 142 3 HOH HOH 1043 A HOH 143 3 HOH HOH 1044 A HOH 144 3 HOH HOH 1045 A HOH 145 3 HOH HOH 1046 A HOH 146 3 HOH HOH 1047 A HOH 147 3 HOH HOH 1048 A HOH 148 3 HOH HOH 1049 A HOH 149 3 HOH HOH 1050 A HOH 150 3 HOH HOH 1051 A HOH 151 3 HOH HOH 1052 A HOH 152 3 HOH HOH 1053 A HOH 153 3 HOH HOH 1054 A HOH 154 3 HOH HOH 1055 A HOH 155 3 HOH HOH 1056 A HOH 156 3 HOH HOH 1057 A HOH 157 3 HOH HOH 1058 A HOH 158 3 HOH HOH 1059 A HOH 159 3 HOH HOH 1060 A HOH 160 3 HOH HOH 1061 A HOH 161 3 HOH HOH 1062 A HOH 162 3 HOH HOH 1063 A HOH 163 3 HOH HOH 1064 A HOH 164 3 HOH HOH 1065 A HOH 165 3 HOH HOH 1066 A HOH 166 3 HOH HOH 1067 A HOH 167 3 HOH HOH 1068 A HOH 168 3 HOH HOH 1069 A HOH 169 3 HOH HOH 1070 A HOH 170 3 HOH HOH 1071 A HOH 171 3 HOH HOH 1072 A HOH 172 3 HOH HOH 1073 A HOH 173 3 HOH HOH 1074 A HOH 174 3 HOH HOH 1075 A HOH 175 3 HOH HOH 1076 A HOH 176 3 HOH HOH 1077 A HOH 177 3 HOH HOH 1078 A HOH 178 3 HOH HOH 1079 A HOH 179 3 HOH HOH 1080 A HOH 180 3 HOH HOH 1081 A HOH 181 3 HOH HOH 1082 A HOH 182 3 HOH HOH 1083 A HOH 183 3 HOH HOH 1084 A HOH 184 3 HOH HOH 1085 A HOH 185 3 HOH HOH 1086 A HOH 186 3 HOH HOH 1087 A HOH 187 3 HOH HOH 1088 A HOH 188 3 HOH HOH 1089 A HOH 189 3 HOH HOH 1090 A HOH 190 3 HOH HOH 1091 A HOH 191 3 HOH HOH 1092 A HOH 192 3 HOH HOH 1093 A HOH 193 3 HOH HOH 1094 A HOH 194 3 HOH HOH 1095 A HOH 195 3 HOH HOH 1096 A HOH 196 3 HOH HOH 1097 A HOH 197 3 HOH HOH 1098 A HOH 198 3 HOH HOH 1099 A HOH 199 3 HOH HOH 1100 A HOH 200 3 HOH HOH 1101 A HOH 201 3 HOH HOH 1102 A HOH 202 3 HOH HOH 1103 A HOH 203 3 HOH HOH 1104 A HOH 204 3 HOH HOH 1105 A HOH 205 3 HOH HOH 1106 A HOH 206 3 HOH HOH 1107 A HOH 207 3 HOH HOH 1108 A HOH 211 3 HOH HOH 1109 A HOH 212 3 HOH HOH 1110 A HOH 213 3 HOH HOH 1111 A HOH 214 3 HOH HOH 1112 A HOH 215 3 HOH HOH 1113 A HOH 216 3 HOH HOH 1114 A HOH 217 3 HOH HOH 1115 A HOH 218 3 HOH HOH 1116 A HOH 219 3 HOH HOH 1117 A HOH 220 3 HOH HOH 1118 A HOH 221 3 HOH HOH 1119 A HOH 222 3 HOH HOH 1120 A HOH 223 3 HOH HOH 1121 A HOH 224 3 HOH HOH 1122 A HOH 225 3 HOH HOH 1123 A HOH 226 3 HOH HOH 1124 A HOH 227 3 HOH HOH 1125 A HOH 228 3 HOH HOH 1126 A HOH 229 3 HOH HOH 1127 A HOH 230 3 HOH HOH 1128 A HOH 231 3 HOH HOH 1129 A HOH 232 3 HOH HOH 1130 A HOH 233 3 HOH HOH 1131 A HOH 234 3 HOH HOH 1132 A HOH 235 3 HOH HOH 1133 A HOH 236 3 HOH HOH 1134 A HOH 237 3 HOH HOH 1135 A HOH 238 3 HOH HOH 1136 A HOH 239 3 HOH HOH 1137 A HOH 240 3 HOH HOH 1138 A HOH 241 3 HOH HOH 1139 A HOH 242 3 HOH HOH 1140 A HOH 243 3 HOH HOH 1141 A HOH 244 3 HOH HOH 1142 A HOH 245 3 HOH HOH 1143 A HOH 246 3 HOH HOH 1144 A HOH 247 3 HOH HOH 1145 A HOH 248 3 HOH HOH 1146 A HOH 249 3 HOH HOH 1147 A HOH 253 3 HOH HOH 1148 A SER 1 n 1 SER 1 A THR 2 n 2 THR 2 A LEU 3 n 3 LEU 3 A GLU 4 n 4 GLU 4 A ILE 5 n 5 ILE 5 A ALA 6 n 6 ALA 6 A GLY 7 n 7 GLY 7 A LEU 8 n 8 LEU 8 A VAL 9 n 9 VAL 9 A ARG 10 n 10 ARG 10 A LYS 11 n 11 LYS 11 A ASN 12 n 12 ASN 12 A LEU 13 n 13 LEU 13 A VAL 14 n 14 VAL 14 A GLN 15 n 15 GLN 15 A PHE 16 n 16 PHE 16 A GLY 17 n 17 GLY 17 A VAL 18 n 18 VAL 18 A GLY 19 n 19 GLY 19 A GLU 20 n 20 GLU 20 A LYS 21 n 21 LYS 21 A ASN 22 n 22 ASN 22 A GLY 23 n 23 GLY 23 A SER 24 n 24 SER 24 A VAL 25 n 25 VAL 25 A ARG 26 n 26 ARG 26 A TRP 27 n 27 TRP 27 A VAL 28 n 28 VAL 28 A MET 29 n 29 MET 29 A ASN 30 n 30 ASN 30 A ALA 31 n 31 ALA 31 A LEU 32 n 32 LEU 32 A GLY 33 n 33 GLY 33 A VAL 34 n 34 VAL 34 A LYS 35 n 35 LYS 35 A ASP 36 n 36 ASP 36 A ASP 37 n 37 ASP 37 A TRP 38 n 38 TRP 38 A LEU 39 n 39 LEU 39 A LEU 40 n 40 LEU 40 A VAL 41 n 41 VAL 41 A PRO 42 n 42 PRO 42 A SER 43 n 43 SER 43 A HIS 44 n 44 HIS 44 A ALA 45 n 45 ALA 45 A TYR 46 n 46 TYR 46 A LYS 47 n 47 LYS 47 A PHE 48 n 48 PHE 48 A GLU 49 n 49 GLU 49 A LYS 50 n 50 LYS 50 A ASP 51 n 51 ASP 51 A TYR 52 n 52 TYR 52 A GLU 53 n 53 GLU 53 A MET 54 n 54 MET 54 A MET 55 n 55 MET 55 A GLU 56 n 56 GLU 56 A PHE 57 n 57 PHE 57 A TYR 58 n 58 TYR 58 A PHE 59 n 59 PHE 59 A ASN 60 n 60 ASN 60 A ARG 61 n 61 ARG 61 A GLY 62 n 62 GLY 62 A GLY 63 n 63 GLY 63 A THR 64 n 64 THR 64 A TYR 65 n 65 TYR 65 A TYR 66 n 66 TYR 66 A SER 67 n 67 SER 67 A ILE 68 n 68 ILE 68 A SER 69 n 69 SER 69 A ALA 70 n 70 ALA 70 A GLY 71 n 71 GLY 71 A ASN 72 n 72 ASN 72 A VAL 73 n 73 VAL 73 A VAL 74 n 74 VAL 74 A ILE 75 n 75 ILE 75 A GLN 76 n 76 GLN 76 A SER 77 n 77 SER 77 A LEU 78 n 78 LEU 78 A ASP 79 n 79 ASP 79 A VAL 80 n 80 VAL 80 A GLY 81 n 81 GLY 81 A PHE 82 n 82 PHE 82 A GLN 83 n 83 GLN 83 A ASP 84 n 84 ASP 84 A VAL 85 n 85 VAL 85 A VAL 86 n 86 VAL 86 A LEU 87 n 87 LEU 87 A MET 88 n 88 MET 88 A LYS 89 n 89 LYS 89 A VAL 90 n 90 VAL 90 A PRO 91 n 91 PRO 91 A THR 92 n 92 THR 92 A ILE 93 n 93 ILE 93 A PRO 94 n 94 PRO 94 A LYS 95 n 95 LYS 95 A PHE 96 n 96 PHE 96 A ARG 97 n 97 ARG 97 A ASP 98 n 98 ASP 98 A ILE 99 n 99 ILE 99 A THR 100 n 100 THR 100 A GLN 101 n 101 GLN 101 A HIS 102 n 102 HIS 102 A PHE 103 n 103 PHE 103 A ILE 104 n 104 ILE 104 A LYS 105 n 105 LYS 105 A LYS 106 n 106 LYS 106 A GLY 107 n 107 GLY 107 A ASP 108 n 108 ASP 108 A VAL 109 n 109 VAL 109 A PRO 110 n 110 PRO 110 A ARG 111 n 111 ARG 111 A ALA 112 n 112 ALA 112 A LEU 113 n 113 LEU 113 A ASN 114 n 114 ASN 114 A ARG 115 n 115 ARG 115 A LEU 116 n 116 LEU 116 A ALA 117 n 117 ALA 117 A THR 118 n 118 THR 118 A LEU 119 n 119 LEU 119 A VAL 120 n 120 VAL 120 A THR 121 n 121 THR 121 A THR 122 n 122 THR 122 A VAL 123 n 123 VAL 123 A ASN 124 n 124 ASN 124 A GLY 125 n 125 GLY 125 A THR 126 n 126 THR 126 A PRO 127 n 127 PRO 127 A MET 128 n 128 MET 128 A LEU 129 n 129 LEU 129 A ILE 130 n 130 ILE 130 A SER 131 n 131 SER 131 A GLU 132 n 132 GLU 132 A GLY 133 n 133 GLY 133 A PRO 134 n 134 PRO 134 A LEU 135 n 135 LEU 135 A LYS 136 n 136 LYS 136 A MET 137 n 137 MET 137 A GLU 138 n 138 GLU 138 A GLU 139 n 139 GLU 139 A LYS 140 n 140 LYS 140 A ALA 141 n 141 ALA 141 A THR 142 n 142 THR 142 A TYR 143 n 143 TYR 143 A VAL 144 n 144 VAL 144 A HIS 145 n 145 HIS 145 A LYS 146 n 146 LYS 146 A LYS 147 n 147 LYS 147 A ASN 148 n 148 ASN 148 A ASP 149 n 149 ASP 149 A GLY 150 n 150 GLY 150 A THR 151 n 151 THR 151 A THR 152 n 152 THR 152 A VAL 153 n 153 VAL 153 A ASP 154 n 154 ASP 154 A LEU 155 n 155 LEU 155 A THR 156 n 156 THR 156 A VAL 157 n 157 VAL 157 A ASP 158 n 158 ASP 158 A GLN 159 n 159 GLN 159 A ALA 160 n 160 ALA 160 A TRP 161 n 161 TRP 161 A ARG 162 n 162 ARG 162 A GLY 163 n 163 GLY 163 A LYS 164 n 164 LYS 164 A GLY 165 n 165 GLY 165 A GLU 166 n 166 GLU 166 A GLY 167 n 167 GLY 167 A LEU 168 n 168 LEU 168 A PRO 169 n 169 PRO 169 A GLY 170 n 170 GLY 170 A MET 171 n 171 MET 171 A CYS 172 n 172 CYS 172 A GLY 173 n 173 GLY 173 A GLY 174 n 174 GLY 174 A ALA 175 n 175 ALA 175 A LEU 176 n 176 LEU 176 A VAL 177 n 177 VAL 177 A SER 178 n 178 SER 178 A SER 179 n 179 SER 179 A ASN 180 n 180 ASN 180 A GLN 181 n 181 GLN 181 A SER 182 n 182 SER 182 A ILE 183 n 183 ILE 183 A GLN 184 n 184 GLN 184 A ASN 185 n 185 ASN 185 A ALA 186 n 186 ALA 186 A ILE 187 n 187 ILE 187 A LEU 188 n 188 LEU 188 A GLY 189 n 189 GLY 189 A ILE 190 n 190 ILE 190 A HIS 191 n 191 HIS 191 A VAL 192 n 192 VAL 192 A ALA 193 n 193 ALA 193 A GLY 194 n 194 GLY 194 A GLY 195 n 195 GLY 195 A ASN 196 n 196 ASN 196 A SER 197 n 197 SER 197 A ILE 198 n 198 ILE 198 A LEU 199 n 199 LEU 199 A VAL 200 n 200 VAL 200 A ALA 201 n 201 ALA 201 A LYS 202 n 202 LYS 202 A LEU 203 n 203 LEU 203 A VAL 204 n 204 VAL 204 A THR 205 n 205 THR 205 A GLN 206 n 206 GLN 206 A GLU 207 n 207 GLU 207 A MET 208 n 208 MET 208 A PHE 209 n 209 PHE 209 A GLN 210 n 210 GLN 210 A ASN 211 n 211 ASN 211 A ILE 212 n 212 ILE 212 A n 213 213 A n 214 214 A n 215 215 A n 216 216 A n 217 217 A n 218 218 A n 219 219 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ILE 68 A O ILE 68 A N PHE 57 A N PHE 57 A O GLU 56 A O GLU 56 A N GLY 19 A N GLY 19 A N PHE 16 A N PHE 16 A O MET 29 A O MET 29 A N LYS 35 A N LYS 35 A O TRP 38 A O TRP 38 A N LEU 39 A N LEU 39 A O MET 88 A O MET 88 A O LEU 87 A O LEU 87 A N GLN 76 A N GLN 76 A O ILE 130 A O ILE 130 A N LEU 119 A N LEU 119 A N VAL 120 A N VAL 120 A O ALA 175 A O ALA 175 A N LEU 176 A N LEU 176 A O LEU 188 A O LEU 188 A N ALA 193 A N ALA 193 A O VAL 200 A O VAL 200 A O LEU 199 A O LEU 199 A N GLY 163 A N GLY 163 A O LEU 155 A O LEU 155 A N TYR 143 A N TYR 143 1 A ASP 213 A ASP 213 1 Y 1 A LYS 214 A LYS 214 1 Y 1 A LYS 215 A LYS 215 1 Y 1 A ILE 216 A ILE 216 1 Y 1 A GLU 217 A GLU 217 1 Y 1 A SER 218 A SER 218 1 Y 1 A GLN 219 A GLN 219 1 Y 1 A MET 29 -166.45 -163.42 1 A LYS 35 -172.59 141.56 1 A ASP 36 49.75 -126.59 1 A TYR 46 -137.89 -30.48 1 A ASP 84 68.03 -73.04 1 A ASN 124 37.14 50.56 1 A GLN 159 56.56 84.96 16.381 0.03 0.00 0.00 -0.02 0.00 -0.01 0.966 0.960 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.18757 0.16626 0.18619 0.18619 1.40 18.35 2601 36721 36721 93.4 98.81 2.004 0.037 RANDOM 1 THROUGHOUT 0 MOLECULAR REPLACEMENT 0.569 0.80 0.80 1.20 PDB ENTRY 1HAV MAXIMUM LIKELIHOOD MASK 1.40 18.35 247 1897 16 0 1634 0.006 0.022 1680 0.986 1.966 2270 5.807 5.000 211 36.483 24.928 69 11.197 15.000 296 15.521 15.000 7 0.064 0.200 258 0.003 0.020 1244 0.196 0.200 794 0.305 0.200 1163 0.083 0.200 257 0.140 0.200 65 0.069 0.200 42 0.567 1.500 1069 0.972 2.000 1693 1.190 3.000 682 1.951 4.500 577 0.747 3.000 1751 0.581 3.000 332 0.432 3.000 1650 0.233 0.185 1.436 201 2674 20 99.79 1.4 20 2CXV 40672 39711 5 5 0.037 1 13.6 97.7 0.211 1.40 1.44 5.8 98.0 refinement REFMAC 5.2.0005 data reduction DENZO data scaling SCALEPACK phasing AMoRE Dual Modes of Modification of Hepatitis A Virus 3C Protease by a Serine-Derived betaLactone: Selective Crystallization and High-resolution Structure of the His-102 Adduct 1 N N 2 N N 3 N N the biological assembly of this protein is likely to be a monomer. A SER 1 A SER 1 HELX_P A ASN 12 A ASN 12 1 1 12 A HIS 44 A HIS 44 HELX_P A TYR 46 A TYR 46 5 2 3 A ASP 51 A ASP 51 HELX_P A MET 54 A MET 54 5 3 4 A GLY 71 A GLY 71 HELX_P A VAL 73 A VAL 73 5 4 3 A ILE 99 A ILE 99 HELX_P A PHE 103 A PHE 103 5 5 5 A LYS 105 A LYS 105 HELX_P A LEU 113 A LEU 113 5 6 9 A ASN 180 A ASN 180 HELX_P A GLN 184 A GLN 184 5 7 5 A THR 205 A THR 205 HELX_P A ILE 212 A ILE 212 5 8 8 covale 1.372 none A HIS 102 A NE2 HIS 102 1_555 A BBL 901 B CBZ BBL 1_555 HYDROLASE Hepatitis A, picornavirus, 3C, cysteine protease, inhibitor, beta-Lactone, HYDROLASE POLG_HPAVM UNP 1 1520 P13901 STLEIAGLVRKNLVQFGVGEKNGCVRWVMNALGVKDDWLLVPSHAYKFEKDYEMMEFYFNRGGTYYSISAGNVVIQSLDV GFQDVVLMKVPTIPKFRDITQHFIKKGDVPRALNRLATLVTTVNGTPMLISEGPLKMEEKATYVHKKNDGTTVDLTVDQA WRGKGEGLPGMCGGALVSSNQSIQNAILGIHVAGGNSILVAKLVTQEMFQNIDKKIESQ 1520 1738 2CXV 1 219 P13901 A 1 1 219 1 CYS engineered mutation SER 24 2CXV A P13901 UNP 1543 24 7 7 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A THR 64 A THR 64 A SER 69 A SER 69 A GLU 56 A GLU 56 A ARG 61 A ARG 61 A LEU 13 A LEU 13 A GLY 19 A GLY 19 A ARG 26 A ARG 26 A LYS 35 A LYS 35 A TRP 38 A TRP 38 A PRO 42 A PRO 42 A VAL 85 A VAL 85 A LYS 89 A LYS 89 A VAL 74 A VAL 74 A SER 77 A SER 77 A THR 126 A THR 126 A GLU 132 A GLU 132 A ALA 117 A ALA 117 A VAL 123 A VAL 123 A ALA 175 A ALA 175 A SER 178 A SER 178 A ILE 187 A ILE 187 A GLY 195 A GLY 195 A ILE 198 A ILE 198 A LEU 203 A LEU 203 A THR 152 A THR 152 A LYS 164 A LYS 164 A LYS 136 A LYS 136 A LYS 146 A LYS 146 BINDING SITE FOR RESIDUE BBL A 901 A BBL 901 Software 13 A ALA 6 A ALA 6 13 4_556 A LEU 8 A LEU 8 13 1_555 A ARG 10 A ARG 10 13 4_556 A ARG 97 A ARG 97 13 1_555 A GLN 101 A GLN 101 13 1_555 A HIS 102 A HIS 102 13 1_555 A PRO 127 A PRO 127 13 4_556 A MET 128 A MET 128 13 4_556 A LEU 129 A LEU 129 13 4_556 A HOH 932 C HOH 13 1_555 A HOH 992 C HOH 13 4_556 A HOH 1007 C HOH 13 1_555 A HOH 1106 C HOH 13 1_555 19 P 21 21 21