0.016601 0.000000 0.000000 0.000000 0.016601 0.000000 0.000000 0.000000 0.005839 0.00000 0.00000 0.00000 Arai, R. Nishino, A. Nagano, K. Kamo-Uchikubo, T. Nishimoto, M. Toyama, M. Terada, T. Murayama, K. Shirouzu, M. Yokoyama, S. RIKEN Structural Genomics/Proteomics Initiative (RSGI) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 60.236 60.236 171.276 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H11 N O3 S2 197.276 n S,S-(2-HYDROXYETHYL)THIOCYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking K 1 39.098 POTASSIUM ION non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C4 H6 O6 150.087 L(+)-TARTARIC ACID non-polymer C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking C20 H42 O11 458.541 3,6,9,12,15,18,21,24,27-NONAOXANONACOSANE-1,29-DIOL DECAETHYLENE GLYCOL non-polymer US J.Struct.Biol. JSBIEM 0803 1047-8477 168 575 581 10.1016/j.jsb.2009.07.007 19602440 Crystal structure of MqnD (TTHA1568), a menaquinone biosynthetic enzyme from Thermus thermophilus HB8. 2009 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 100 1 1 Two dimensional focusing mirror CCD 2005-04-16 RIGAKU JUPITER 210 Two dimensional focusing mirror CCD 2005-05-25 RIGAKU JUPITER 210 Si double crystal SINGLE WAVELENGTH M x-ray 1 Si double crystal MAD M x-ray 1 1.00000 1.0 1.07181 1.0 1.07216 1.0 1.05000 1.0 BL26B1 SPring-8 1.00000 SYNCHROTRON SPRING-8 BEAMLINE BL26B1 BL26B1 SPring-8 1.07181, 1.07216, 1.05000 SYNCHROTRON SPRING-8 BEAMLINE BL26B1 30144.529 hypothetical protein TTHA1568 1 man polymer 39.098 POTASSIUM ION 1 syn non-polymer 150.087 L(+)-TARTARIC ACID 1 syn non-polymer 458.541 3,6,9,12,15,18,21,24,27-NONAOXANONACOSANE-1,29-DIOL 1 syn non-polymer 18.015 water 316 nat water no yes MEALRLGFSP(CME)PNDTFIFYALVHGRVESPVPLEPVLEDVETLNRWALEGRLPLTKLSYAAYAQVRDRYVALRSGGA LGRGVGPLVVARGPLQALEGLRVAVPGRHTTAYFLLSLYAQGFVPVEVRYDRILPMVAQGEVEAGLIIHESRFTYPRYGL VQVVDLGAWWEERTGLPLPLGAILARRDLGEGLIRALDEAVRRSVAYALAHPEEALDYMRAHAQELSDEVIWAHVHTYVN AFSLDVGEEGERAVARLFAEAEARGLAAPSPRPLFV MEALRLGFSPCPNDTFIFYALVHGRVESPVPLEPVLEDVETLNRWALEGRLPLTKLSYAAYAQVRDRYVALRSGGALGRG VGPLVVARGPLQALEGLRVAVPGRHTTAYFLLSLYAQGFVPVEVRYDRILPMVAQGEVEAGLIIHESRFTYPRYGLVQVV DLGAWWEERTGLPLPLGAILARRDLGEGLIRALDEAVRRSVAYALAHPEEALDYMRAHAQELSDEVIWAHVHTYVNAFSL DVGEEGERAVARLFAEAEARGLAAPSPRPLFV A ttk003001639.1 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Thermus Thermus thermophilus HB8 Escherichia Escherichia coli sample TTHA1568 300852 Thermus thermophilus 469008 Escherichia coli BL21(DE3) BL21(DE3) PLASMID pET11 2 2.64 53.3 VAPOR DIFFUSION, HANGING DROP 7.5 0.1M Tris-HCl, 0.8M Potassium sodium tartrate, 2.5% PEG 5000, MME, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 VAPOR DIFFUSION, HANGING DROP 8.0 0.1M Tris-HCl, 0.8M Potassium sodium tartrate, 0.75% PEG 5000, MME, 5mM K2PtCl4, 16h soaking, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 RIKEN Structural Genomics/Proteomics Initiative RSGI NPPSFA, National Project on Protein Structural and Functional Analyses repository Initial release Version format compliance Source and taxonomy Version format compliance 1 0 2006-01-13 1 1 2008-04-30 1 2 2011-07-13 STRUCTURE OF THE SAME PROTEIN WITHOUT MODIFICATION AT CYS11 Y PDBJ Y PDBJ 2005-07-13 REL REL K POTASSIUM ION TLA L(+)-TARTARIC ACID XPE 3,6,9,12,15,18,21,24,27-NONAOXANONACOSANE-1,29-DIOL HOH water K 601 2 K K 601 A TLA 401 3 TLA TLA 401 A XPE 501 4 XPE XPE 501 A HOH 1 5 HOH HOH 602 A HOH 2 5 HOH HOH 603 A HOH 3 5 HOH HOH 604 A HOH 4 5 HOH HOH 605 A HOH 5 5 HOH HOH 606 A HOH 6 5 HOH HOH 607 A HOH 7 5 HOH HOH 608 A HOH 8 5 HOH HOH 609 A HOH 9 5 HOH HOH 610 A HOH 10 5 HOH HOH 611 A HOH 11 5 HOH HOH 612 A HOH 12 5 HOH HOH 613 A HOH 13 5 HOH HOH 614 A HOH 14 5 HOH HOH 615 A HOH 15 5 HOH HOH 616 A HOH 16 5 HOH HOH 617 A HOH 17 5 HOH HOH 618 A HOH 18 5 HOH HOH 619 A HOH 19 5 HOH HOH 620 A HOH 20 5 HOH HOH 621 A HOH 21 5 HOH HOH 622 A HOH 22 5 HOH HOH 623 A HOH 23 5 HOH HOH 624 A HOH 24 5 HOH HOH 625 A HOH 25 5 HOH HOH 626 A HOH 26 5 HOH HOH 627 A HOH 27 5 HOH HOH 628 A HOH 28 5 HOH HOH 629 A HOH 29 5 HOH HOH 630 A HOH 30 5 HOH HOH 631 A HOH 31 5 HOH HOH 632 A HOH 32 5 HOH HOH 633 A HOH 33 5 HOH HOH 634 A HOH 34 5 HOH HOH 635 A HOH 35 5 HOH HOH 636 A HOH 36 5 HOH HOH 637 A HOH 37 5 HOH HOH 638 A HOH 38 5 HOH HOH 639 A HOH 39 5 HOH HOH 640 A HOH 40 5 HOH HOH 641 A HOH 41 5 HOH HOH 642 A HOH 42 5 HOH HOH 643 A HOH 43 5 HOH HOH 644 A HOH 44 5 HOH HOH 645 A HOH 45 5 HOH HOH 646 A HOH 46 5 HOH HOH 647 A HOH 47 5 HOH HOH 648 A HOH 48 5 HOH HOH 649 A HOH 49 5 HOH HOH 650 A HOH 50 5 HOH HOH 651 A HOH 51 5 HOH HOH 652 A HOH 52 5 HOH HOH 653 A HOH 53 5 HOH HOH 654 A HOH 54 5 HOH HOH 655 A HOH 55 5 HOH HOH 656 A HOH 56 5 HOH HOH 657 A HOH 57 5 HOH HOH 658 A HOH 58 5 HOH HOH 659 A HOH 59 5 HOH HOH 660 A HOH 60 5 HOH HOH 661 A HOH 61 5 HOH HOH 662 A HOH 62 5 HOH HOH 663 A HOH 63 5 HOH HOH 664 A HOH 64 5 HOH HOH 665 A HOH 65 5 HOH HOH 666 A HOH 66 5 HOH HOH 667 A HOH 67 5 HOH HOH 668 A HOH 68 5 HOH HOH 669 A HOH 69 5 HOH HOH 670 A HOH 70 5 HOH HOH 671 A HOH 71 5 HOH HOH 672 A HOH 72 5 HOH HOH 673 A HOH 73 5 HOH HOH 674 A HOH 74 5 HOH HOH 675 A HOH 75 5 HOH HOH 676 A HOH 76 5 HOH HOH 677 A HOH 77 5 HOH HOH 678 A HOH 78 5 HOH HOH 679 A HOH 79 5 HOH HOH 680 A HOH 80 5 HOH HOH 681 A HOH 81 5 HOH HOH 682 A HOH 82 5 HOH HOH 683 A HOH 83 5 HOH HOH 684 A HOH 84 5 HOH HOH 685 A HOH 85 5 HOH HOH 686 A HOH 86 5 HOH HOH 687 A HOH 87 5 HOH HOH 688 A HOH 88 5 HOH HOH 689 A HOH 89 5 HOH HOH 690 A HOH 90 5 HOH HOH 691 A HOH 91 5 HOH HOH 692 A HOH 92 5 HOH HOH 693 A HOH 93 5 HOH HOH 694 A HOH 94 5 HOH HOH 695 A HOH 95 5 HOH HOH 696 A HOH 96 5 HOH HOH 697 A HOH 97 5 HOH HOH 698 A HOH 98 5 HOH HOH 699 A HOH 99 5 HOH HOH 700 A HOH 100 5 HOH HOH 701 A HOH 101 5 HOH HOH 702 A HOH 102 5 HOH HOH 703 A HOH 103 5 HOH HOH 704 A HOH 104 5 HOH HOH 705 A HOH 105 5 HOH HOH 706 A HOH 106 5 HOH HOH 707 A HOH 107 5 HOH HOH 708 A HOH 108 5 HOH HOH 709 A HOH 109 5 HOH HOH 710 A HOH 110 5 HOH HOH 711 A HOH 111 5 HOH HOH 712 A HOH 112 5 HOH HOH 713 A HOH 113 5 HOH HOH 714 A HOH 114 5 HOH HOH 715 A HOH 115 5 HOH HOH 716 A HOH 116 5 HOH HOH 717 A HOH 117 5 HOH HOH 718 A HOH 118 5 HOH HOH 719 A HOH 119 5 HOH HOH 720 A HOH 120 5 HOH HOH 721 A HOH 121 5 HOH HOH 722 A HOH 122 5 HOH HOH 723 A HOH 123 5 HOH HOH 724 A HOH 124 5 HOH HOH 725 A HOH 125 5 HOH HOH 726 A HOH 126 5 HOH HOH 727 A HOH 127 5 HOH HOH 728 A HOH 128 5 HOH HOH 729 A HOH 129 5 HOH HOH 730 A HOH 130 5 HOH HOH 731 A HOH 131 5 HOH HOH 732 A HOH 132 5 HOH HOH 733 A HOH 133 5 HOH HOH 734 A HOH 134 5 HOH HOH 735 A HOH 135 5 HOH HOH 736 A HOH 136 5 HOH HOH 737 A HOH 137 5 HOH HOH 738 A HOH 138 5 HOH HOH 739 A HOH 139 5 HOH HOH 740 A HOH 140 5 HOH HOH 741 A HOH 141 5 HOH HOH 742 A HOH 142 5 HOH HOH 743 A HOH 143 5 HOH HOH 744 A HOH 144 5 HOH HOH 745 A HOH 145 5 HOH HOH 746 A HOH 146 5 HOH HOH 747 A HOH 147 5 HOH HOH 748 A HOH 148 5 HOH HOH 749 A HOH 149 5 HOH HOH 750 A HOH 150 5 HOH HOH 751 A HOH 151 5 HOH HOH 752 A HOH 152 5 HOH HOH 753 A HOH 153 5 HOH HOH 754 A HOH 154 5 HOH HOH 755 A HOH 155 5 HOH HOH 756 A HOH 156 5 HOH HOH 757 A HOH 157 5 HOH HOH 758 A HOH 158 5 HOH HOH 759 A HOH 159 5 HOH HOH 760 A HOH 160 5 HOH HOH 761 A HOH 161 5 HOH HOH 762 A HOH 162 5 HOH HOH 763 A HOH 163 5 HOH HOH 764 A HOH 164 5 HOH HOH 765 A HOH 165 5 HOH HOH 766 A HOH 166 5 HOH HOH 767 A HOH 167 5 HOH HOH 768 A HOH 168 5 HOH HOH 769 A HOH 169 5 HOH HOH 770 A HOH 170 5 HOH HOH 771 A HOH 171 5 HOH HOH 772 A HOH 172 5 HOH HOH 773 A HOH 173 5 HOH HOH 774 A HOH 174 5 HOH HOH 775 A HOH 175 5 HOH HOH 776 A HOH 176 5 HOH HOH 777 A HOH 177 5 HOH HOH 778 A HOH 178 5 HOH HOH 779 A HOH 179 5 HOH HOH 780 A HOH 180 5 HOH HOH 781 A HOH 181 5 HOH HOH 782 A HOH 182 5 HOH HOH 783 A HOH 183 5 HOH HOH 784 A HOH 184 5 HOH HOH 785 A HOH 185 5 HOH HOH 786 A HOH 186 5 HOH HOH 787 A HOH 187 5 HOH HOH 788 A HOH 188 5 HOH HOH 789 A HOH 189 5 HOH HOH 790 A HOH 190 5 HOH HOH 791 A HOH 191 5 HOH HOH 792 A HOH 192 5 HOH HOH 793 A HOH 193 5 HOH HOH 794 A HOH 194 5 HOH HOH 795 A HOH 195 5 HOH HOH 796 A HOH 196 5 HOH HOH 797 A HOH 197 5 HOH HOH 798 A HOH 198 5 HOH HOH 799 A HOH 199 5 HOH HOH 800 A HOH 200 5 HOH HOH 801 A HOH 201 5 HOH HOH 802 A HOH 202 5 HOH HOH 803 A HOH 203 5 HOH HOH 804 A HOH 204 5 HOH HOH 805 A HOH 205 5 HOH HOH 806 A HOH 206 5 HOH HOH 807 A HOH 207 5 HOH HOH 808 A HOH 208 5 HOH HOH 809 A HOH 209 5 HOH HOH 810 A HOH 210 5 HOH HOH 811 A HOH 211 5 HOH HOH 812 A HOH 212 5 HOH HOH 813 A HOH 213 5 HOH HOH 814 A HOH 214 5 HOH HOH 815 A HOH 215 5 HOH HOH 816 A HOH 216 5 HOH HOH 817 A HOH 217 5 HOH HOH 818 A HOH 218 5 HOH HOH 819 A HOH 219 5 HOH HOH 820 A HOH 220 5 HOH HOH 821 A HOH 221 5 HOH HOH 822 A HOH 222 5 HOH HOH 823 A HOH 223 5 HOH HOH 824 A HOH 224 5 HOH HOH 825 A HOH 225 5 HOH HOH 826 A HOH 226 5 HOH HOH 827 A HOH 227 5 HOH HOH 828 A HOH 228 5 HOH HOH 829 A HOH 229 5 HOH HOH 830 A HOH 230 5 HOH HOH 831 A HOH 231 5 HOH HOH 832 A HOH 232 5 HOH HOH 833 A HOH 233 5 HOH HOH 834 A HOH 234 5 HOH HOH 835 A HOH 235 5 HOH HOH 836 A HOH 236 5 HOH HOH 837 A HOH 237 5 HOH HOH 838 A HOH 238 5 HOH HOH 839 A HOH 239 5 HOH HOH 840 A HOH 240 5 HOH HOH 841 A HOH 241 5 HOH HOH 842 A HOH 242 5 HOH HOH 843 A HOH 243 5 HOH HOH 844 A HOH 244 5 HOH HOH 845 A HOH 245 5 HOH HOH 846 A HOH 246 5 HOH HOH 847 A HOH 247 5 HOH HOH 848 A HOH 248 5 HOH HOH 849 A HOH 249 5 HOH HOH 850 A HOH 250 5 HOH HOH 851 A HOH 251 5 HOH HOH 852 A HOH 252 5 HOH HOH 853 A HOH 253 5 HOH HOH 854 A HOH 254 5 HOH HOH 855 A HOH 255 5 HOH HOH 856 A HOH 256 5 HOH HOH 857 A HOH 257 5 HOH HOH 858 A HOH 258 5 HOH HOH 859 A HOH 259 5 HOH HOH 860 A HOH 260 5 HOH HOH 861 A HOH 261 5 HOH HOH 862 A HOH 262 5 HOH HOH 863 A HOH 263 5 HOH HOH 864 A HOH 264 5 HOH HOH 865 A HOH 265 5 HOH HOH 866 A HOH 266 5 HOH HOH 867 A HOH 267 5 HOH HOH 868 A HOH 268 5 HOH HOH 869 A HOH 269 5 HOH HOH 870 A HOH 270 5 HOH HOH 871 A HOH 271 5 HOH HOH 872 A HOH 272 5 HOH HOH 873 A HOH 273 5 HOH HOH 874 A HOH 274 5 HOH HOH 875 A HOH 275 5 HOH HOH 876 A HOH 276 5 HOH HOH 877 A HOH 277 5 HOH HOH 878 A HOH 278 5 HOH HOH 879 A HOH 279 5 HOH HOH 880 A HOH 280 5 HOH HOH 881 A HOH 281 5 HOH HOH 882 A HOH 282 5 HOH HOH 883 A HOH 283 5 HOH HOH 884 A HOH 284 5 HOH HOH 885 A HOH 285 5 HOH HOH 886 A HOH 286 5 HOH HOH 887 A HOH 287 5 HOH HOH 888 A HOH 288 5 HOH HOH 889 A HOH 289 5 HOH HOH 890 A HOH 290 5 HOH HOH 891 A HOH 291 5 HOH HOH 892 A HOH 292 5 HOH HOH 893 A HOH 293 5 HOH HOH 894 A HOH 294 5 HOH HOH 895 A HOH 295 5 HOH HOH 896 A HOH 296 5 HOH HOH 897 A HOH 297 5 HOH HOH 898 A HOH 298 5 HOH HOH 899 A HOH 299 5 HOH HOH 900 A HOH 300 5 HOH HOH 901 A HOH 301 5 HOH HOH 902 A HOH 302 5 HOH HOH 903 A HOH 303 5 HOH HOH 904 A HOH 304 5 HOH HOH 905 A HOH 305 5 HOH HOH 906 A HOH 306 5 HOH HOH 907 A HOH 307 5 HOH HOH 908 A HOH 308 5 HOH HOH 909 A HOH 309 5 HOH HOH 910 A HOH 310 5 HOH HOH 911 A HOH 311 5 HOH HOH 912 A HOH 312 5 HOH HOH 913 A HOH 313 5 HOH HOH 914 A HOH 314 5 HOH HOH 915 A HOH 315 5 HOH HOH 916 A HOH 316 5 HOH HOH 917 A n 1 1 A n 2 2 A ALA 3 n 3 ALA 3 A LEU 4 n 4 LEU 4 A ARG 5 n 5 ARG 5 A LEU 6 n 6 LEU 6 A GLY 7 n 7 GLY 7 A PHE 8 n 8 PHE 8 A SER 9 n 9 SER 9 A PRO 10 n 10 PRO 10 A CME 11 n 11 CME 11 A PRO 12 n 12 PRO 12 A ASN 13 n 13 ASN 13 A ASP 14 n 14 ASP 14 A THR 15 n 15 THR 15 A PHE 16 n 16 PHE 16 A ILE 17 n 17 ILE 17 A PHE 18 n 18 PHE 18 A TYR 19 n 19 TYR 19 A ALA 20 n 20 ALA 20 A LEU 21 n 21 LEU 21 A VAL 22 n 22 VAL 22 A HIS 23 n 23 HIS 23 A GLY 24 n 24 GLY 24 A ARG 25 n 25 ARG 25 A VAL 26 n 26 VAL 26 A GLU 27 n 27 GLU 27 A SER 28 n 28 SER 28 A PRO 29 n 29 PRO 29 A VAL 30 n 30 VAL 30 A PRO 31 n 31 PRO 31 A LEU 32 n 32 LEU 32 A GLU 33 n 33 GLU 33 A PRO 34 n 34 PRO 34 A VAL 35 n 35 VAL 35 A LEU 36 n 36 LEU 36 A GLU 37 n 37 GLU 37 A ASP 38 n 38 ASP 38 A VAL 39 n 39 VAL 39 A GLU 40 n 40 GLU 40 A THR 41 n 41 THR 41 A LEU 42 n 42 LEU 42 A ASN 43 n 43 ASN 43 A ARG 44 n 44 ARG 44 A TRP 45 n 45 TRP 45 A ALA 46 n 46 ALA 46 A LEU 47 n 47 LEU 47 A GLU 48 n 48 GLU 48 A GLY 49 n 49 GLY 49 A ARG 50 n 50 ARG 50 A LEU 51 n 51 LEU 51 A PRO 52 n 52 PRO 52 A LEU 53 n 53 LEU 53 A THR 54 n 54 THR 54 A LYS 55 n 55 LYS 55 A LEU 56 n 56 LEU 56 A SER 57 n 57 SER 57 A TYR 58 n 58 TYR 58 A ALA 59 n 59 ALA 59 A ALA 60 n 60 ALA 60 A TYR 61 n 61 TYR 61 A ALA 62 n 62 ALA 62 A GLN 63 n 63 GLN 63 A VAL 64 n 64 VAL 64 A ARG 65 n 65 ARG 65 A ASP 66 n 66 ASP 66 A ARG 67 n 67 ARG 67 A TYR 68 n 68 TYR 68 A VAL 69 n 69 VAL 69 A ALA 70 n 70 ALA 70 A LEU 71 n 71 LEU 71 A ARG 72 n 72 ARG 72 A SER 73 n 73 SER 73 A GLY 74 n 74 GLY 74 A GLY 75 n 75 GLY 75 A ALA 76 n 76 ALA 76 A LEU 77 n 77 LEU 77 A GLY 78 n 78 GLY 78 A ARG 79 n 79 ARG 79 A GLY 80 n 80 GLY 80 A VAL 81 n 81 VAL 81 A GLY 82 n 82 GLY 82 A PRO 83 n 83 PRO 83 A LEU 84 n 84 LEU 84 A VAL 85 n 85 VAL 85 A VAL 86 n 86 VAL 86 A ALA 87 n 87 ALA 87 A ARG 88 n 88 ARG 88 A GLY 89 n 89 GLY 89 A PRO 90 n 90 PRO 90 A LEU 91 n 91 LEU 91 A GLN 92 n 92 GLN 92 A ALA 93 n 93 ALA 93 A LEU 94 n 94 LEU 94 A GLU 95 n 95 GLU 95 A GLY 96 n 96 GLY 96 A LEU 97 n 97 LEU 97 A ARG 98 n 98 ARG 98 A VAL 99 n 99 VAL 99 A ALA 100 n 100 ALA 100 A VAL 101 n 101 VAL 101 A PRO 102 n 102 PRO 102 A GLY 103 n 103 GLY 103 A ARG 104 n 104 ARG 104 A HIS 105 n 105 HIS 105 A THR 106 n 106 THR 106 A THR 107 n 107 THR 107 A ALA 108 n 108 ALA 108 A TYR 109 n 109 TYR 109 A PHE 110 n 110 PHE 110 A LEU 111 n 111 LEU 111 A LEU 112 n 112 LEU 112 A SER 113 n 113 SER 113 A LEU 114 n 114 LEU 114 A TYR 115 n 115 TYR 115 A ALA 116 n 116 ALA 116 A GLN 117 n 117 GLN 117 A GLY 118 n 118 GLY 118 A PHE 119 n 119 PHE 119 A VAL 120 n 120 VAL 120 A PRO 121 n 121 PRO 121 A VAL 122 n 122 VAL 122 A GLU 123 n 123 GLU 123 A VAL 124 n 124 VAL 124 A ARG 125 n 125 ARG 125 A TYR 126 n 126 TYR 126 A ASP 127 n 127 ASP 127 A ARG 128 n 128 ARG 128 A ILE 129 n 129 ILE 129 A LEU 130 n 130 LEU 130 A PRO 131 n 131 PRO 131 A MET 132 n 132 MET 132 A VAL 133 n 133 VAL 133 A ALA 134 n 134 ALA 134 A GLN 135 n 135 GLN 135 A GLY 136 n 136 GLY 136 A GLU 137 n 137 GLU 137 A VAL 138 n 138 VAL 138 A GLU 139 n 139 GLU 139 A ALA 140 n 140 ALA 140 A GLY 141 n 141 GLY 141 A LEU 142 n 142 LEU 142 A ILE 143 n 143 ILE 143 A ILE 144 n 144 ILE 144 A HIS 145 n 145 HIS 145 A GLU 146 n 146 GLU 146 A SER 147 n 147 SER 147 A ARG 148 n 148 ARG 148 A PHE 149 n 149 PHE 149 A THR 150 n 150 THR 150 A TYR 151 n 151 TYR 151 A PRO 152 n 152 PRO 152 A ARG 153 n 153 ARG 153 A TYR 154 n 154 TYR 154 A GLY 155 n 155 GLY 155 A LEU 156 n 156 LEU 156 A VAL 157 n 157 VAL 157 A GLN 158 n 158 GLN 158 A VAL 159 n 159 VAL 159 A VAL 160 n 160 VAL 160 A ASP 161 n 161 ASP 161 A LEU 162 n 162 LEU 162 A GLY 163 n 163 GLY 163 A ALA 164 n 164 ALA 164 A TRP 165 n 165 TRP 165 A TRP 166 n 166 TRP 166 A GLU 167 n 167 GLU 167 A GLU 168 n 168 GLU 168 A ARG 169 n 169 ARG 169 A THR 170 n 170 THR 170 A GLY 171 n 171 GLY 171 A LEU 172 n 172 LEU 172 A PRO 173 n 173 PRO 173 A LEU 174 n 174 LEU 174 A PRO 175 n 175 PRO 175 A LEU 176 n 176 LEU 176 A GLY 177 n 177 GLY 177 A ALA 178 n 178 ALA 178 A ILE 179 n 179 ILE 179 A LEU 180 n 180 LEU 180 A ALA 181 n 181 ALA 181 A ARG 182 n 182 ARG 182 A ARG 183 n 183 ARG 183 A ASP 184 n 184 ASP 184 A LEU 185 n 185 LEU 185 A GLY 186 n 186 GLY 186 A GLU 187 n 187 GLU 187 A GLY 188 n 188 GLY 188 A LEU 189 n 189 LEU 189 A ILE 190 n 190 ILE 190 A ARG 191 n 191 ARG 191 A ALA 192 n 192 ALA 192 A LEU 193 n 193 LEU 193 A ASP 194 n 194 ASP 194 A GLU 195 n 195 GLU 195 A ALA 196 n 196 ALA 196 A VAL 197 n 197 VAL 197 A ARG 198 n 198 ARG 198 A ARG 199 n 199 ARG 199 A SER 200 n 200 SER 200 A VAL 201 n 201 VAL 201 A ALA 202 n 202 ALA 202 A TYR 203 n 203 TYR 203 A ALA 204 n 204 ALA 204 A LEU 205 n 205 LEU 205 A ALA 206 n 206 ALA 206 A HIS 207 n 207 HIS 207 A PRO 208 n 208 PRO 208 A GLU 209 n 209 GLU 209 A GLU 210 n 210 GLU 210 A ALA 211 n 211 ALA 211 A LEU 212 n 212 LEU 212 A ASP 213 n 213 ASP 213 A TYR 214 n 214 TYR 214 A MET 215 n 215 MET 215 A ARG 216 n 216 ARG 216 A ALA 217 n 217 ALA 217 A HIS 218 n 218 HIS 218 A ALA 219 n 219 ALA 219 A GLN 220 n 220 GLN 220 A GLU 221 n 221 GLU 221 A LEU 222 n 222 LEU 222 A SER 223 n 223 SER 223 A ASP 224 n 224 ASP 224 A GLU 225 n 225 GLU 225 A VAL 226 n 226 VAL 226 A ILE 227 n 227 ILE 227 A TRP 228 n 228 TRP 228 A ALA 229 n 229 ALA 229 A HIS 230 n 230 HIS 230 A VAL 231 n 231 VAL 231 A HIS 232 n 232 HIS 232 A THR 233 n 233 THR 233 A TYR 234 n 234 TYR 234 A VAL 235 n 235 VAL 235 A ASN 236 n 236 ASN 236 A ALA 237 n 237 ALA 237 A PHE 238 n 238 PHE 238 A SER 239 n 239 SER 239 A LEU 240 n 240 LEU 240 A ASP 241 n 241 ASP 241 A VAL 242 n 242 VAL 242 A GLY 243 n 243 GLY 243 A GLU 244 n 244 GLU 244 A GLU 245 n 245 GLU 245 A GLY 246 n 246 GLY 246 A GLU 247 n 247 GLU 247 A ARG 248 n 248 ARG 248 A ALA 249 n 249 ALA 249 A VAL 250 n 250 VAL 250 A ALA 251 n 251 ALA 251 A ARG 252 n 252 ARG 252 A LEU 253 n 253 LEU 253 A PHE 254 n 254 PHE 254 A ALA 255 n 255 ALA 255 A GLU 256 n 256 GLU 256 A ALA 257 n 257 ALA 257 A GLU 258 n 258 GLU 258 A ALA 259 n 259 ALA 259 A ARG 260 n 260 ARG 260 A GLY 261 n 261 GLY 261 A LEU 262 n 262 LEU 262 A ALA 263 n 263 ALA 263 A ALA 264 n 264 ALA 264 A PRO 265 n 265 PRO 265 A SER 266 n 266 SER 266 A PRO 267 n 267 PRO 267 A ARG 268 n 268 ARG 268 A PRO 269 n 269 PRO 269 A LEU 270 n 270 LEU 270 A PHE 271 n 271 PHE 271 A VAL 272 n 272 VAL 272 A author_defined_assembly 1 monomeric A XPE 501 D O13 XPE 1_555 A K 601 B K K 1_555 A PHE 149 A O PHE 149 1_555 82.4 A XPE 501 D O13 XPE 1_555 A K 601 B K K 1_555 A XPE 501 D O4 XPE 1_555 125.0 A PHE 149 A O PHE 149 1_555 A K 601 B K K 1_555 A XPE 501 D O4 XPE 1_555 145.3 A XPE 501 D O13 XPE 1_555 A K 601 B K K 1_555 A XPE 501 D O19 XPE 1_555 112.2 A PHE 149 A O PHE 149 1_555 A K 601 B K K 1_555 A XPE 501 D O19 XPE 1_555 104.9 A XPE 501 D O4 XPE 1_555 A K 601 B K K 1_555 A XPE 501 D O19 XPE 1_555 85.3 A XPE 501 D O13 XPE 1_555 A K 601 B K K 1_555 A XPE 501 D O22 XPE 1_555 156.7 A PHE 149 A O PHE 149 1_555 A K 601 B K K 1_555 A XPE 501 D O22 XPE 1_555 79.4 A XPE 501 D O4 XPE 1_555 A K 601 B K K 1_555 A XPE 501 D O22 XPE 1_555 77.7 A XPE 501 D O19 XPE 1_555 A K 601 B K K 1_555 A XPE 501 D O22 XPE 1_555 59.6 A XPE 501 D O13 XPE 1_555 A K 601 B K K 1_555 A XPE 501 D O10 XPE 1_555 58.6 A PHE 149 A O PHE 149 1_555 A K 601 B K K 1_555 A XPE 501 D O10 XPE 1_555 74.8 A XPE 501 D O4 XPE 1_555 A K 601 B K K 1_555 A XPE 501 D O10 XPE 1_555 100.2 A XPE 501 D O19 XPE 1_555 A K 601 B K K 1_555 A XPE 501 D O10 XPE 1_555 170.8 A XPE 501 D O22 XPE 1_555 A K 601 B K K 1_555 A XPE 501 D O10 XPE 1_555 128.6 A XPE 501 D O13 XPE 1_555 A K 601 B K K 1_555 A XPE 501 D O16 XPE 1_555 57.4 A PHE 149 A O PHE 149 1_555 A K 601 B K K 1_555 A XPE 501 D O16 XPE 1_555 116.6 A XPE 501 D O4 XPE 1_555 A K 601 B K K 1_555 A XPE 501 D O16 XPE 1_555 97.4 A XPE 501 D O19 XPE 1_555 A K 601 B K K 1_555 A XPE 501 D O16 XPE 1_555 60.0 A XPE 501 D O22 XPE 1_555 A K 601 B K K 1_555 A XPE 501 D O16 XPE 1_555 119.6 A XPE 501 D O10 XPE 1_555 A K 601 B K K 1_555 A XPE 501 D O16 XPE 1_555 111.7 A XPE 501 D O13 XPE 1_555 A K 601 B K K 1_555 A XPE 501 D O7 XPE 1_555 118.1 A PHE 149 A O PHE 149 1_555 A K 601 B K K 1_555 A XPE 501 D O7 XPE 1_555 88.9 A XPE 501 D O4 XPE 1_555 A K 601 B K K 1_555 A XPE 501 D O7 XPE 1_555 60.5 A XPE 501 D O19 XPE 1_555 A K 601 B K K 1_555 A XPE 501 D O7 XPE 1_555 129.1 A XPE 501 D O22 XPE 1_555 A K 601 B K K 1_555 A XPE 501 D O7 XPE 1_555 76.0 A XPE 501 D O10 XPE 1_555 A K 601 B K K 1_555 A XPE 501 D O7 XPE 1_555 60.0 A XPE 501 D O16 XPE 1_555 A K 601 B K K 1_555 A XPE 501 D O7 XPE 1_555 151.2 A CME 11 S,S-(2-HYDROXYETHYL)THIOCYSTEINE A CME 11 CYS 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O GLU 33 A O GLU 33 A N LEU 4 A N LEU 4 A N GLY 7 A N GLY 7 A O LYS 55 A O LYS 55 A N THR 54 A N THR 54 A O LEU 180 A O LEU 180 A O ALA 181 A O ALA 181 A N VAL 69 A N VAL 69 A O GLU 33 A O GLU 33 A N LEU 4 A N LEU 4 A N GLY 7 A N GLY 7 A O LYS 55 A O LYS 55 A N THR 54 A N THR 54 A O LEU 180 A O LEU 180 A O GLY 177 A O GLY 177 A N ALA 76 A N ALA 76 A O VAL 122 A O VAL 122 A N VAL 101 A N VAL 101 A N ALA 100 A N ALA 100 A O LEU 142 A O LEU 142 A O ILE 143 A O ILE 143 A N LEU 84 A N LEU 84 A N VAL 85 A N VAL 85 A O VAL 159 A O VAL 159 1 A HOH 905 E HOH 1 A MET 1 A MET 1 1 Y 1 A GLU 2 A GLU 2 1 Y 1 A A O O HOH HOH 713 897 1.97 1 A A OE2 NE GLU ARG 244 248 2.19 1 A HIS 145 54.61 -135.15 protein_rep_CME.param protein_CME.top water_rep.param water.top ion.param ion.top tla.param tla.top pegf_7.param pegf_7.top 20.7 -0.16 0.00 0.00 -0.16 0.00 0.32 0.209 0.003 0.182 1.55 42.82 4520 44576 10.1 95.1 RANDOM 670101.11 0.000000 1 RESTRAINED THROUGHOUT 0.0 MAD MAXIMUM LIKELIHOOD FLAT MODEL 49.8724 0.368804 0.19 0.16 5.00 0.12 0.09 1.55 42.82 316 2471 42 0 2113 0.010 1.6 22.5 1.15 2.34 1.50 2.96 2.00 3.54 2.00 4.75 2.50 0.251 0.010 0.213 1.65 649 6096 6745 6 9.6 88.6 19.9 1.55 50.0 2CZL 45583 -3 0.071 1,2 18.79 6.6 97.2 1.55 1.61 5.05 4258 0.282 1,2 4.1 93.3 refinement CNS 1.1 data reduction HKL-2000 data scaling SCALEPACK phasing SOLVE hypothetical protein TTHA1568 Crystal structure of MqnD (TTHA1568), a menaquinone biosynthetic enzyme from Thermus thermophilus HB8 (Cys11 modified with beta-mercaptoethanol) 1 N N 2 N N 3 N N 4 N N 5 N N A CME 11 A CME 11 HELX_P A HIS 23 A HIS 23 1 1 13 A ASP 38 A ASP 38 HELX_P A GLU 48 A GLU 48 1 2 11 A TYR 58 A TYR 58 HELX_P A ALA 62 A ALA 62 1 3 5 A THR 106 A THR 106 HELX_P A ALA 116 A ALA 116 1 4 11 A ARG 125 A ARG 125 HELX_P A ASP 127 A ASP 127 5 5 3 A ARG 128 A ARG 128 HELX_P A GLN 135 A GLN 135 1 6 8 A GLU 146 A GLU 146 HELX_P A TYR 151 A TYR 151 1 7 6 A PRO 152 A PRO 152 HELX_P A GLY 155 A GLY 155 5 8 4 A LEU 162 A LEU 162 HELX_P A GLY 171 A GLY 171 1 9 10 A GLY 186 A GLY 186 HELX_P A HIS 207 A HIS 207 1 10 22 A PRO 208 A PRO 208 HELX_P A GLU 210 A GLU 210 5 11 3 A ALA 211 A ALA 211 HELX_P A ALA 219 A ALA 219 1 12 9 A SER 223 A SER 223 HELX_P A VAL 235 A VAL 235 1 13 13 A ASN 236 A ASN 236 HELX_P A ASP 241 A ASP 241 1 14 6 A VAL 242 A VAL 242 HELX_P A ARG 260 A ARG 260 1 15 19 covale 1.339 A PRO 10 A C PRO 10 1_555 A CME 11 A N CME 11 1_555 covale 1.336 A CME 11 A C CME 11 1_555 A PRO 12 A N PRO 12 1_555 metalc 2.907 A K 601 B K K 1_555 A XPE 501 D O13 XPE 1_555 metalc 2.838 A K 601 B K K 1_555 A PHE 149 A O PHE 149 1_555 metalc 2.920 A K 601 B K K 1_555 A XPE 501 D O4 XPE 1_555 metalc 2.885 A K 601 B K K 1_555 A XPE 501 D O19 XPE 1_555 metalc 2.905 A K 601 B K K 1_555 A XPE 501 D O22 XPE 1_555 metalc 2.959 A K 601 B K K 1_555 A XPE 501 D O10 XPE 1_555 metalc 2.907 A K 601 B K K 1_555 A XPE 501 D O16 XPE 1_555 metalc 2.831 A K 601 B K K 1_555 A XPE 501 D O7 XPE 1_555 STRUCTURAL GENOMICS, UNKNOWN FUNCTION Conserved hypothetical protein, TTHA1568, Extremely thermophilic bacteria, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, UNKNOWN FUNCTION YP_144834 GB 1 1 55981537 1 272 2CZL 1 272 55981537 A 1 1 272 5 5 5 parallel parallel anti-parallel anti-parallel parallel parallel anti-parallel anti-parallel parallel parallel anti-parallel anti-parallel A LEU 32 A LEU 32 A LEU 36 A LEU 36 A LEU 4 A LEU 4 A PHE 8 A PHE 8 A LEU 53 A LEU 53 A SER 57 A SER 57 A LEU 174 A LEU 174 A ARG 182 A ARG 182 A TYR 68 A TYR 68 A ALA 70 A ALA 70 A LEU 32 A LEU 32 A LEU 36 A LEU 36 A LEU 4 A LEU 4 A PHE 8 A PHE 8 A LEU 53 A LEU 53 A SER 57 A SER 57 A LEU 174 A LEU 174 A ARG 182 A ARG 182 A ALA 76 A ALA 76 A GLY 78 A GLY 78 A VAL 120 A VAL 120 A GLU 123 A GLU 123 A ARG 98 A ARG 98 A VAL 101 A VAL 101 A ALA 140 A ALA 140 A ILE 143 A ILE 143 A LEU 84 A LEU 84 A ALA 87 A ALA 87 A VAL 157 A VAL 157 A ASP 161 A ASP 161 BINDING SITE FOR RESIDUE K A 601 Software 2 BINDING SITE FOR RESIDUE TLA A 401 Software 11 BINDING SITE FOR RESIDUE XPE A 501 Software 10 A PHE 149 A PHE 149 2 1_555 A XPE 501 D XPE 2 1_555 A VAL 39 A VAL 39 11 1_555 A LYS 55 A LYS 55 11 1_555 A SER 57 A SER 57 11 1_555 A THR 106 A THR 106 11 1_555 A THR 107 A THR 107 11 1_555 A ALA 108 A ALA 108 11 1_555 A HIS 145 A HIS 145 11 1_555 A LEU 176 A LEU 176 11 1_555 A HOH 602 E HOH 11 1_555 A HOH 648 E HOH 11 1_555 A HOH 696 E HOH 11 1_555 A ARG 148 A ARG 148 10 1_555 A PHE 149 A PHE 149 10 1_555 A TYR 151 A TYR 151 10 1_555 A PRO 152 A PRO 152 10 1_555 A ARG 153 A ARG 153 10 1_555 A ARG 198 A ARG 198 10 5_645 A GLU 225 A GLU 225 10 1_555 A ALA 229 A ALA 229 10 1_555 A K 601 B K 10 1_555 A HOH 844 E HOH 10 1_555 96 P 43 21 2