0.019467 0.000000 0.008586 0.000000 0.016106 0.000000 0.000000 0.000000 0.043648 0.00000 0.00000 0.00000 Shinomiya, M. Chu, W. Carlson, R.G. Weaver, R.F. Takusagawa, F. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 113.80 90.00 51.370 62.090 25.040 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H11 N O2 117.146 D-VALINE D-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 n N-METHYLVALINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C16 H12 N2 O4 296.277 2-AMINO-1,9-DICARBONYL-4,6-DIMETHYL-10-DEHYDRO-PHENOXAZIN-3-ONE PHENOXAZINE non-polymer C3 H7 N O2 89.093 n SARCOSINE peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N P N 110 N O N 111 N O N 112 N O N 113 N C N 114 R C N 115 N O N 116 S C N 117 N O N 118 N C N 119 R C N 120 N N N 121 N C N 122 N O N 123 N N N 124 N C N 125 N O N 126 N C N 127 N C N 128 N C N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N N N 145 R C N 146 N C N 147 N C N 148 N C N 149 N C N 150 N O N 151 N O N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N O N 164 N H N 165 N H N 166 N N N 167 N C N 168 S C N 169 N C N 170 N C N 171 N C N 172 N C N 173 N O N 174 N O N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N N N 189 S C N 190 N C N 191 N O N 192 N C N 193 N C N 194 N C N 195 N O N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H Y 205 N C N 206 N C N 207 N O Y 208 N C N 209 N N Y 210 N C N 211 N O Y 212 N C Y 213 N O Y 214 N C Y 215 N C Y 216 N C Y 217 N C N 218 N C N 219 N O Y 220 N N Y 221 N C Y 222 N C Y 223 N C Y 224 N C N 225 N C N 226 N C N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N N N 240 N C N 241 N C N 242 N O N 243 N C N 244 N O N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N N N 253 S C N 254 N C N 255 N O N 256 R C N 257 N O N 258 N C N 259 N O N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N doub N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N doub N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing Y 209 N doub Y 210 N sing N 211 N doub N 212 N sing N 213 N sing Y 214 N sing N 215 N sing N 216 N sing N 217 N doub Y 218 N sing Y 219 N doub N 220 N sing Y 221 N sing Y 222 N sing Y 223 N doub Y 224 N sing N 225 N sing Y 226 N sing N 227 N sing Y 228 N doub N 229 N sing N 230 N sing Y 231 N sing N 232 N doub N 233 N sing Y 234 N doub Y 235 N sing Y 236 N sing Y 237 N doub N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N doub N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N doub N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 225 445 10.1016/0022-2836(92)90931-9 1593629 Crystal Structure of the 2:1 Complex between D(Gaagcttc) and the Anticancer Drug Actinomycin D. 1992 US Biochemistry BICHAW 0033 0006-2960 34 8481 10.1021/BI00026A032 7541244 Structural, Physical, and Biological Characteristics of RNA.DNA Binding Agent N8- Actinomycin D. 1995 10.2210/pdb2d55/pdb pdb_00002d55 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 DIFFRACTOMETER SINGLE WAVELENGTH M x-ray 1 1.0 ROTATING ANODE 2426.617 DNA (5'-D(*GP*AP*AP*GP*CP*TP*TP*C)-3') 2 syn polymer 1259.447 ACTINOMYCIN D 1 nat polymer 18.015 water 104 nat water no no (DG)(DA)(DA)(DG)(DC)(DT)(DT)(DC) GAAGCTTC A,B polydeoxyribonucleotide no yes T(DVA)P(SAR)(MVA)(PXZ)T(DVA)P(SAR)(MVA) TVPGVXTVPGV C polypeptide(L) n n n n n n n n n n n n n n n n n n n sample 1890 STREPTOMYCES ANTIBIOTICUS 3.76 67.32 7.00 PH 7.00, VAPOR DIFFUSION, TEMPERATURE 277.00K WATER 1 MPD 1 MGCL2 1 NA CACODYLATE 1 SPERMINE_HCL 1 WATER 2 MPD 2 -2.350 1 19 A 1 B 16 -3.646 A_DG1:DC16_B 1 -11.398 0.100 0.023 -0.184 0.233 1 20 A 2 B 15 0.546 A_DA2:DT15_B 2 -6.485 -0.612 -0.009 -0.237 6.269 1 20 A 3 B 14 -3.485 A_DA3:DT14_B 3 -9.123 -0.141 0.338 -0.216 -1.337 1 19 A 4 B 13 -5.172 A_DG4:DC13_B 4 4.018 -0.253 0.106 -0.178 -0.192 1 19 A 5 B 12 -0.692 A_DC5:DG12_B 5 1.943 0.046 0.410 -0.203 28.108 1 20 A 6 B 11 0.141 A_DT6:DA11_B 6 -5.693 -0.043 -0.656 -0.010 4.577 1 20 A 7 B 10 -11.068 A_DT7:DA10_B 7 -5.254 0.253 -0.962 -0.357 -9.243 1 19 A 8 B 9 -3.324 A_DC8:DG9_B 8 4.635 0.265 0.541 -0.193 2.495 26.624 A A 1 2 18.870 B B 16 15 3.268 8.530 -0.494 -1.743 AA_DG1DA2:DT15DC16_BB 1 2.397 -5.302 25.132 -5.812 1.642 3.046 44.053 A A 2 3 2.873 B B 15 14 2.982 2.154 -0.337 1.180 AA_DA2DA3:DT14DT15_BB 2 -2.071 2.763 43.957 1.387 0.269 2.788 34.401 A A 3 4 31.489 B B 14 13 3.565 17.757 -0.459 -0.616 AA_DA3DG4:DC13DT14_BB 3 -2.286 4.054 29.496 -3.954 0.401 6.223 5.209 A A 4 5 -19.398 B B 13 12 7.131 -1.697 -0.539 -0.165 AA_DG4DC5:DG12DC13_BB 4 1.672 -19.111 4.633 23.517 30.884 2.490 38.919 A A 5 6 -5.517 B B 12 11 2.683 -3.634 0.457 2.355 AA_DC5DT6:DA11DG12_BB 5 9.836 -14.933 37.533 3.890 0.276 4.247 44.772 A A 6 7 6.265 B B 11 10 4.233 4.764 -2.038 0.690 AA_DT6DT7:DA10DA11_BB 6 0.773 -1.017 44.524 0.342 2.767 1.539 26.939 A A 7 8 51.723 B B 10 9 4.110 21.047 2.074 -1.531 AA_DT7DC8:DG9DA10_BB 7 1.947 -4.786 16.798 -9.066 -3.917 atom_site chem_comp_atom chem_comp_bond database_2 pdbx_validate_polymer_linkage struct_conn repository Initial release Version format compliance Version format compliance Atomic model Database references Derived calculations Non-polymer description Structure summary Other Advisory Atomic model Data collection Database references Derived calculations 1 0 1995-10-15 1 1 2011-06-14 1 2 2011-07-13 1 3 2011-07-27 1 4 2012-12-12 2 0 2023-11-15 _atom_site.auth_atom_id _atom_site.label_atom_id _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr2_label_atom_id 1995-10-15 SPRSDE CRYSTAL STRUCTURE OF ACTINOMYCIN Z3 CRYSTAL STRUCTURE OF N8-ACTINOMYCIN D COMPLEXED WITH D(GAAGCTTC)2 CRYSTAL STRUCTURE OF 7-AMINOACTINOMYCIN D COMPLEXED WITH NON-COMPLEMENTARY DNA CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (CGATCGATCG)2 CRYSTAL STRUCTURE OF ACTINOMYCIN D SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (AAGCGCTT)2 CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2 SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2 SOLUTION STRUCTURE OF ACTNIOMYCIN D COMPLEXED WITH MISMATCHED DNA (GTCACCGAC) CRYSTAL STRUCTURE OF F8-ACTINOMYCIN D COMPLEXED WITH DNA (GAAGCTTC)2 SOLUTION STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (GATGCTTC)2 CRYSTAL STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (ATGCTGCAT)2 CRYSTAL STRUCTURE OF 7-AMINO-ACTINOMYCIN D COMPLEXED WITH A NON-COMPLEMENTARY DNA (TTAGT)2 SOLUTIOM STRUCTURE OF ACTINOMYCIN D COMPLEXED WITH DNA (CCGTTTTGTGG)2 CRYSTAL STRUCTURE OF ACTINOMYCIN X2 BNL Y NDB 1995-05-01 REL REL HOH water ACTINOMYCIN D IS A BICYCLIC PEPTIDE, A MEMBER OF THE ACTINOMYCIN FAMILY. HERE, ACTINOMYCIN D IS REPRESENTED BY THE SEQUENCE (SEQRES) Antibiotic ACTINOMYCIN D CONSISTS OF TWO PENTAMER RINGS LINKED BY THE CHROMOPHORE (PXZ) Actinomycin D Polypeptide HOH 2001 3 HOH HOH 2001 A HOH 2002 3 HOH HOH 2002 A HOH 2003 3 HOH HOH 2003 A HOH 2004 3 HOH HOH 2004 A HOH 2005 3 HOH HOH 2005 A HOH 2006 3 HOH HOH 2006 A HOH 2007 3 HOH HOH 2007 A HOH 2008 3 HOH HOH 2008 A HOH 2009 3 HOH HOH 2009 A HOH 2010 3 HOH HOH 2010 A HOH 2011 3 HOH HOH 2011 A HOH 2012 3 HOH HOH 2012 A HOH 2013 3 HOH HOH 2013 A HOH 2014 3 HOH HOH 2014 A HOH 2015 3 HOH HOH 2015 A HOH 2016 3 HOH HOH 2016 A HOH 2017 3 HOH HOH 2017 A HOH 2018 3 HOH HOH 2018 A HOH 2019 3 HOH HOH 2019 A HOH 2020 3 HOH HOH 2020 A HOH 2021 3 HOH HOH 2021 A HOH 2022 3 HOH HOH 2022 A HOH 2023 3 HOH HOH 2023 A HOH 2024 3 HOH HOH 2024 A HOH 2025 3 HOH HOH 2025 A HOH 2026 3 HOH HOH 2026 A HOH 2027 3 HOH HOH 2027 A HOH 2028 3 HOH HOH 2028 A HOH 2029 3 HOH HOH 2029 A HOH 2030 3 HOH HOH 2030 A HOH 2031 3 HOH HOH 2031 A HOH 2032 3 HOH HOH 2032 A HOH 2033 3 HOH HOH 2033 A HOH 2034 3 HOH HOH 2034 A HOH 2035 3 HOH HOH 2035 A HOH 2036 3 HOH HOH 2036 A HOH 2037 3 HOH HOH 2037 A HOH 2038 3 HOH HOH 2038 A HOH 2039 3 HOH HOH 2039 A HOH 2040 3 HOH HOH 2040 A HOH 2041 3 HOH HOH 2041 A HOH 2042 3 HOH HOH 2042 A HOH 2043 3 HOH HOH 2043 A HOH 2044 3 HOH HOH 2044 A HOH 2045 3 HOH HOH 2045 A HOH 2046 3 HOH HOH 2046 A HOH 2047 3 HOH HOH 2047 A HOH 2048 3 HOH HOH 2048 A HOH 2001 3 HOH HOH 2001 B HOH 2002 3 HOH HOH 2002 B HOH 2003 3 HOH HOH 2003 B HOH 2004 3 HOH HOH 2004 B HOH 2005 3 HOH HOH 2005 B HOH 2006 3 HOH HOH 2006 B HOH 2007 3 HOH HOH 2007 B HOH 2008 3 HOH HOH 2008 B HOH 2009 3 HOH HOH 2009 B HOH 2010 3 HOH HOH 2010 B HOH 2011 3 HOH HOH 2011 B HOH 2012 3 HOH HOH 2012 B HOH 2013 3 HOH HOH 2013 B HOH 2014 3 HOH HOH 2014 B HOH 2015 3 HOH HOH 2015 B HOH 2016 3 HOH HOH 2016 B HOH 2017 3 HOH HOH 2017 B HOH 2018 3 HOH HOH 2018 B HOH 2019 3 HOH HOH 2019 B HOH 2020 3 HOH HOH 2020 B HOH 2021 3 HOH HOH 2021 B HOH 2022 3 HOH HOH 2022 B HOH 2023 3 HOH HOH 2023 B HOH 2024 3 HOH HOH 2024 B HOH 2025 3 HOH HOH 2025 B HOH 2026 3 HOH HOH 2026 B HOH 2027 3 HOH HOH 2027 B HOH 2028 3 HOH HOH 2028 B HOH 2029 3 HOH HOH 2029 B HOH 2030 3 HOH HOH 2030 B HOH 2031 3 HOH HOH 2031 B HOH 2032 3 HOH HOH 2032 B HOH 2033 3 HOH HOH 2033 B HOH 2034 3 HOH HOH 2034 B HOH 2035 3 HOH HOH 2035 B HOH 2036 3 HOH HOH 2036 B HOH 2037 3 HOH HOH 2037 B HOH 2038 3 HOH HOH 2038 B HOH 2039 3 HOH HOH 2039 B HOH 2040 3 HOH HOH 2040 B HOH 2041 3 HOH HOH 2041 B HOH 2042 3 HOH HOH 2042 B HOH 2043 3 HOH HOH 2043 B HOH 2044 3 HOH HOH 2044 B HOH 2045 3 HOH HOH 2045 B HOH 2046 3 HOH HOH 2046 B HOH 2047 3 HOH HOH 2047 B HOH 2048 3 HOH HOH 2048 B HOH 2049 3 HOH HOH 2049 B HOH 2050 3 HOH HOH 2050 B HOH 2051 3 HOH HOH 2051 B HOH 2052 3 HOH HOH 2052 B HOH 2053 3 HOH HOH 2053 B HOH 2054 3 HOH HOH 2054 B HOH 2055 3 HOH HOH 2055 B HOH 2001 3 HOH HOH 2001 C DG 1 n 1 DG 1 A DA 2 n 2 DA 2 A DA 3 n 3 DA 3 A DG 4 n 4 DG 4 A DC 5 n 5 DC 5 A DT 6 n 6 DT 6 A DT 7 n 7 DT 7 A DC 8 n 8 DC 8 A DG 9 n 1 DG 9 B DA 10 n 2 DA 10 B DA 11 n 3 DA 11 B DG 12 n 4 DG 12 B DC 13 n 5 DC 13 B DT 14 n 6 DT 14 B DT 15 n 7 DT 15 B DC 16 n 8 DC 16 B THR 1 n 1 THR 1 C DVA 2 n 2 DVA 2 C PRO 3 n 3 PRO 3 C SAR 4 n 4 SAR 4 C MVA 5 n 5 MVA 5 C PXZ 6 n 6 PXZ 6 C THR 7 n 7 THR 7 C DVA 8 n 8 DVA 8 C PRO 9 n 9 PRO 9 C SAR 10 n 10 SAR 10 C MVA 11 n 11 MVA 11 C author_defined_assembly 3 trimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 B O5' DG 9 B O5' DG 1 1 Y 1 A A O H2 HOH HOH 2040 2041 1.57 1 A DG 1 0.091 SIDE CHAIN 1 A DA 2 0.105 SIDE CHAIN 1 A DA 3 0.097 SIDE CHAIN 1 A DG 4 0.082 SIDE CHAIN 1 A DT 7 0.156 SIDE CHAIN 1 A DC 8 0.071 SIDE CHAIN 1 B DG 9 0.074 SIDE CHAIN 1 B DA 10 0.079 SIDE CHAIN 1 B DG 12 0.082 SIDE CHAIN 1 B DT 14 0.172 SIDE CHAIN 1 B DC 16 0.072 SIDE CHAIN 1 -8.66 1.00 110.10 101.44 A A A C1' O4' C4' DG DG DG 1 1 1 N 1 2.37 0.30 108.30 110.67 A A A O4' C1' N9 DG DG DG 1 1 1 N 1 10.24 1.20 119.70 129.94 A A A C3' O3' P DG DG DA 1 1 2 Y 1 -11.22 1.00 110.10 98.88 A A A C1' O4' C4' DA DA DA 2 2 2 N 1 -5.40 0.70 102.20 96.80 A A A C4' C3' C2' DA DA DA 2 2 2 N 1 -7.57 0.80 105.90 98.33 A A A O4' C1' C2' DA DA DA 2 2 2 N 1 18.46 1.40 114.30 132.76 A A A N9 C1' C2' DA DA DA 2 2 2 N 1 7.92 1.20 119.70 127.62 A A A C3' O3' P DA DA DA 2 2 3 Y 1 7.77 1.10 109.80 117.57 A A A C5' C4' O4' DA DA DA 3 3 3 N 1 9.20 1.20 119.70 128.90 A A A C3' O3' P DA DA DG 3 3 4 Y 1 14.82 1.60 120.90 135.72 A A A P O5' C5' DG DG DG 4 4 4 N 1 -5.11 0.70 102.20 97.09 A A A C4' C3' C2' DG DG DG 4 4 4 N 1 -5.90 0.80 105.90 100.00 A A A O4' C1' C2' DG DG DG 4 4 4 N 1 5.92 0.30 108.30 114.22 A A A O4' C1' N9 DG DG DG 4 4 4 N 1 -5.14 0.70 102.20 97.06 A A A C4' C3' C2' DC DC DC 5 5 5 N 1 13.08 1.60 120.90 133.98 A A A P O5' C5' DT DT DT 6 6 6 N 1 -5.78 0.80 105.90 100.12 A A A O4' C1' C2' DT DT DT 6 6 6 N 1 9.51 0.30 108.30 117.81 A A A O4' C1' N1 DT DT DT 6 6 6 N 1 -3.25 0.50 121.30 118.05 A A A C6 N1 C2 DT DT DT 6 6 6 N 1 -3.81 0.60 115.20 111.39 A A A N3 C4 C5 DT DT DT 6 6 6 N 1 4.12 0.60 118.00 122.12 A A A C4 C5 C6 DT DT DT 6 6 6 N 1 -4.59 0.60 122.30 117.71 A A A N3 C2 O2 DT DT DT 6 6 6 N 1 -4.80 0.60 122.90 118.10 A A A C6 C5 C7 DT DT DT 6 6 6 N 1 11.16 1.20 119.70 130.86 A A A C3' O3' P DT DT DT 6 6 7 Y 1 5.11 0.30 108.30 113.41 A A A O4' C1' N1 DT DT DT 7 7 7 N 1 12.71 1.20 119.70 132.41 A A A C3' O3' P DT DT DC 7 7 8 Y 1 -6.68 0.70 102.20 95.52 A A A C4' C3' C2' DC DC DC 8 8 8 N 1 7.73 0.30 108.30 116.03 A A A O4' C1' N1 DC DC DC 8 8 8 N 1 4.46 0.60 118.90 123.36 A A A N1 C2 O2 DC DC DC 8 8 8 N 1 -3.89 0.40 104.50 100.61 B B B O4' C4' C3' DG DG DG 9 9 9 N 1 -11.27 1.00 110.10 98.83 B B B C1' O4' C4' DG DG DG 9 9 9 N 1 6.45 0.30 108.30 114.75 B B B O4' C1' N9 DG DG DG 9 9 9 N 1 12.36 1.90 104.00 116.36 B B B O3' P O5' DG DA DA 9 10 10 Y 1 5.70 0.60 118.60 124.30 B B B N1 C6 N6 DA DA DA 10 10 10 N 1 -6.89 0.80 123.70 116.81 B B B C5 C6 N6 DA DA DA 10 10 10 N 1 8.51 1.20 119.70 128.21 B B B C3' O3' P DA DA DA 10 10 11 Y 1 15.93 1.60 120.90 136.83 B B B P O5' C5' DA DA DA 11 11 11 N 1 12.32 2.00 112.30 124.62 B B B C4' C3' O3' DA DA DA 11 11 11 N 1 11.58 0.30 108.30 119.88 B B B O4' C1' N9 DA DA DA 11 11 11 N 1 11.08 1.20 119.70 130.78 B B B C3' O3' P DA DA DG 11 11 12 Y 1 11.64 1.60 120.90 132.54 B B B P O5' C5' DG DG DG 12 12 12 N 1 7.32 0.30 108.30 115.62 B B B O4' C1' N9 DG DG DG 12 12 12 N 1 12.76 2.00 112.30 125.06 B B B C4' C3' O3' DC DC DC 13 13 13 N 1 -8.57 0.80 105.90 97.33 B B B O4' C1' C2' DC DC DC 13 13 13 N 1 9.39 0.30 108.30 117.69 B B B O4' C1' N1 DC DC DC 13 13 13 N 1 5.30 0.60 118.90 124.20 B B B N1 C2 O2 DC DC DC 13 13 13 N 1 -5.13 0.70 121.90 116.77 B B B N3 C2 O2 DC DC DC 13 13 13 N 1 17.11 1.20 119.70 136.81 B B B C3' O3' P DC DC DT 13 13 14 Y 1 6.75 1.10 109.80 116.55 B B B C5' C4' O4' DT DT DT 14 14 14 N 1 10.57 1.40 114.30 124.87 B B B N1 C1' C2' DT DT DT 14 14 14 N 1 5.38 0.30 108.30 113.68 B B B O4' C1' N1 DT DT DT 15 15 15 N 1 10.66 1.60 120.90 131.56 B B B P O5' C5' DC DC DC 16 16 16 N 1 3.19 0.30 108.30 111.49 B B B O4' C1' N1 DC DC DC 16 16 16 N 1 A A P O5' DA DA 2 2 0.066 0.010 1.593 1.659 N 1 A A C5' C4' DA DA 3 3 0.064 0.007 1.512 1.576 N 1 A A C5' C4' DG DG 4 4 0.051 0.007 1.512 1.563 N 1 A A C6 N1 DG DG 4 4 -0.042 0.007 1.391 1.349 N 1 A A P O5' DT DT 6 6 0.064 0.010 1.593 1.657 N 1 A A C5' C4' DT DT 6 6 0.052 0.007 1.512 1.564 N 1 A A C5' C4' DT DT 7 7 0.060 0.007 1.512 1.572 N 1 A A C5 C7 DT DT 7 7 0.038 0.006 1.496 1.534 N 1 B B P O5' DA DA 11 11 0.076 0.010 1.593 1.669 N 1 B B C5' C4' DA DA 11 11 0.045 0.007 1.512 1.557 N 1 B B P O5' DG DG 12 12 0.076 0.010 1.593 1.669 N 1 B B C5' C4' DG DG 12 12 0.049 0.007 1.512 1.561 N 1 B B O3' P DC DT 13 14 0.078 0.012 1.607 1.685 Y 0.190 0.190 3.00 7.00 1360 1 3.00 7.00 104 515 0 321 90 0.019 4.80 refinement X-PLOR Structural, physical and biological characteristics of RNA.DNA binding agent N8-actinomycin D 1 N N 1 N N 2 N N 3 N N 3 N N 3 N N covale 1.347 both C THR 1 C C THR 1 1_555 C DVA 2 C N DVA 2 1_555 covale 1.387 one C THR 1 C OG1 THR 1 1_555 C MVA 5 C C MVA 5 1_555 covale 1.337 one C THR 1 C N THR 1 1_555 C PXZ 6 C C0 PXZ 6 1_555 covale 1.343 both C DVA 2 C C DVA 2 1_555 C PRO 3 C N PRO 3 1_555 covale 1.342 both C PRO 3 C C PRO 3 1_555 C SAR 4 C N SAR 4 1_555 covale 1.350 both C SAR 4 C C SAR 4 1_555 C MVA 5 C N MVA 5 1_555 covale 1.343 one C PXZ 6 C C0' PXZ 6 1_555 C THR 7 C N THR 7 1_555 covale 1.335 both C THR 7 C C THR 7 1_555 C DVA 8 C N DVA 8 1_555 covale 1.398 one C THR 7 C OG1 THR 7 1_555 C MVA 11 C C MVA 11 1_555 covale 1.348 both C DVA 8 C C DVA 8 1_555 C PRO 9 C N PRO 9 1_555 covale 1.368 both C PRO 9 C C PRO 9 1_555 C SAR 10 C N SAR 10 1_555 covale 1.371 both C SAR 10 C C SAR 10 1_555 C MVA 11 C N MVA 11 1_555 hydrog WATSON-CRICK A DG 1 A N1 DG 1 1_555 B DC 16 B N3 DC 8 1_555 hydrog WATSON-CRICK A DG 1 A N2 DG 1 1_555 B DC 16 B O2 DC 8 1_555 hydrog WATSON-CRICK A DG 1 A O6 DG 1 1_555 B DC 16 B N4 DC 8 1_555 hydrog WATSON-CRICK A DA 2 A N1 DA 2 1_555 B DT 15 B N3 DT 7 1_555 hydrog WATSON-CRICK A DA 2 A N6 DA 2 1_555 B DT 15 B O4 DT 7 1_555 hydrog WATSON-CRICK A DA 3 A N1 DA 3 1_555 B DT 14 B N3 DT 6 1_555 hydrog WATSON-CRICK A DA 3 A N6 DA 3 1_555 B DT 14 B O4 DT 6 1_555 hydrog WATSON-CRICK A DG 4 A N1 DG 4 1_555 B DC 13 B N3 DC 5 1_555 hydrog WATSON-CRICK A DG 4 A N2 DG 4 1_555 B DC 13 B O2 DC 5 1_555 hydrog WATSON-CRICK A DG 4 A O6 DG 4 1_555 B DC 13 B N4 DC 5 1_555 hydrog WATSON-CRICK A DC 5 A N3 DC 5 1_555 B DG 12 B N1 DG 4 1_555 hydrog WATSON-CRICK A DC 5 A N4 DC 5 1_555 B DG 12 B O6 DG 4 1_555 hydrog WATSON-CRICK A DC 5 A O2 DC 5 1_555 B DG 12 B N2 DG 4 1_555 hydrog WATSON-CRICK A DT 6 A N3 DT 6 1_555 B DA 11 B N1 DA 3 1_555 hydrog WATSON-CRICK A DT 6 A O4 DT 6 1_555 B DA 11 B N6 DA 3 1_555 hydrog WATSON-CRICK A DT 7 A N3 DT 7 1_555 B DA 10 B N1 DA 2 1_555 hydrog WATSON-CRICK A DT 7 A O4 DT 7 1_555 B DA 10 B N6 DA 2 1_555 hydrog WATSON-CRICK A DC 8 A N3 DC 8 1_555 B DG 9 B N1 DG 1 1_555 hydrog WATSON-CRICK A DC 8 A N4 DC 8 1_555 B DG 9 B O6 DG 1 1_555 hydrog WATSON-CRICK A DC 8 A O2 DC 8 1_555 B DG 9 B N2 DG 1 1_555 DNA/ANTIBIOTIC ACTINOMYCIN D, DACTINOMYCIN, ANTIBIOTIC, ANTI CANCER, ANTITUMOR, CHROMOPHORE, DEPSIPEPTIDE, DNA-ANTIBIOTIC COMPLEX C DVA 2 C DVA 2 1 C PRO 3 C PRO 3 29.13 C PRO 3 C PRO 3 1 C SAR 4 C SAR 4 -1.57 C DVA 8 C DVA 8 1 C PRO 9 C PRO 9 19.32 C PRO 9 C PRO 9 1 C SAR 10 C SAR 10 -18.31 2D55 PDB 1 2D55 NOR00228 NOR 2 NOR00228 1 8 2D55 1 8 2D55 A 1 1 8 9 16 2D55 9 16 2D55 B 1 1 8 1 11 2D55 1 11 NOR00228 C 2 1 11 BINDING SITE FOR CHAIN C OF ACTINOMYCIN D Software 11 A DG 4 A DG 4 11 1_555 A DC 5 A DC 5 11 1_555 A DT 6 A DT 6 11 1_555 A DT 7 A DT 7 11 1_555 A HOH 2009 D HOH 11 1_555 B DA 11 B DA 3 11 1_555 B DG 12 B DG 4 11 1_555 B DC 13 B DC 5 11 1_555 B DT 14 B DT 6 11 1_555 B DT 15 B DT 7 11 1_555 C HOH 2001 F HOH 11 1_555 5 C 1 2 1