0.020199
0.000000
0.006510
0.000000
0.014519
0.000000
0.000000
0.000000
0.027125
0.00000
0.00000
0.00000
Hisano, T.
Kasuya, K.
Saito, T.
Iwata, T.
Miki, K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
107.86
90.00
49.507
68.876
38.733
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C6 H12 O6
180.156
beta-D-mannopyranose
D-saccharide, beta linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C6 H12 O6
180.156
alpha-D-mannopyranose
D-saccharide, alpha linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
D-saccharide, beta linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
356
993
1004
10.1016/j.jmb.2005.12.028
16405909
The Crystal Structure of Polyhydroxybutyrate Depolymerase from Penicillium funiculosum Provides Insights into the Recognition and Degradation of Biopolyesters
2006
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
90
1
mirrors
CCD
2004-11-04
MARRESEARCH
Si 111
SINGLE WAVELENGTH
M
x-ray
1
1.0000
1.0
BL44B2
SPring-8
1.0000
SYNCHROTRON
SPRING-8 BEAMLINE BL44B2
33525.969
PHB depolymerase
3.1.1.75
1
nat
polymer
910.823
alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
branched
18.015
water
240
nat
water
no
no
TALPAFNVNPNSVSVSGLSSGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCARNQYYTSCMYNGYPSITTPTANMKSWSGN
QIASVANLGQRKIYMWTGSSDTTVGPNVMNQLKAQLGNFDNSANVSYVTTTGAVHTFPTDFNGAGDNSCSLSTSPYISNC
NYDGAGAALKWIYGSLNARNTGTLSGSVLSFAQSGSYGANGMDTTGYLYVPQSCASGATVCSLHVALHGCLQSYSSIGSR
FIQNTGYNKWADTNNMIILYPQAIPDYTIHAIWNGGVLSNPNGCWDWVGWYGSNADQIGGVQMAAIVGQVKQIVSGFQ
TALPAFNVNPNSVSVSGLSSGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCARNQYYTSCMYNGYPSITTPTANMKSWSGN
QIASVANLGQRKIYMWTGSSDTTVGPNVMNQLKAQLGNFDNSANVSYVTTTGAVHTFPTDFNGAGDNSCSLSTSPYISNC
NYDGAGAALKWIYGSLNARNTGTLSGSVLSFAQSGSYGANGMDTTGYLYVPQSCASGATVCSLHVALHGCLQSYSSIGSR
FIQNTGYNKWADTNNMIILYPQAIPDYTIHAIWNGGVLSNPNGCWDWVGWYGSNADQIGGVQMAAIVGQVKQIVSGFQ
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Penicillium
sample
28572
Penicillium funiculosum
IFO 6345
1
1.87
34.37
VAPOR DIFFUSION, SITTING DROP
6.5
20% PEG 8000, 50mM potassium dihydrogenphosphate, 5% glycerol, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 294K
294
atom_site
chem_comp
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
struct_asym
struct_conn
struct_site
struct_site_gen
repository
Initial release
Carbohydrate remediation
repository
Remediation
Version format compliance
Non-polymer description
Version format compliance
Atomic model
Data collection
Derived calculations
Structure summary
1
0
2006-01-31
1
1
2008-04-30
1
2
2011-07-13
2
0
2020-07-29
_atom_site.auth_asym_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_chem_comp.name
_chem_comp.type
_pdbx_struct_assembly_gen.asym_id_list
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_role
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
A
NAG
401
n
B
NAG
1
A
NAG
402
n
B
NAG
2
A
MAN
403
n
B
BMA
3
A
MAN
404
n
B
MAN
4
A
MAN
405
n
B
MAN
5
DManpb
b-D-mannopyranose
b-D-Manp
Man
DManpa
a-D-mannopyranose
a-D-Manp
Man
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
A S39A mutant protein complexed with R3HB trimer
PDBJ
Y
PDBJ
2005-11-30
REL
oligosaccharide
DManpa1-3[DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-
2
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/3,5,4/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3-3/a4-b1_b4-c1_c3-d1_c6-e1
2
PDB2Glycan
1.1.0
WURCS
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{}[(6+1)][a-D-Manp]{}}}}}
2
PDB-CARE
LINUCS
C1
O4
NAG
NAG
2
1
2
O1
HO4
sing
C1
O4
BMA
NAG
3
2
2
O1
HO4
sing
C1
O3
MAN
BMA
4
3
2
O1
HO3
sing
C1
O6
MAN
BMA
5
3
2
O1
HO6
sing
n
n
n
n
n
HOH
water
HOH
501
3
HOH
HOH
501
A
HOH
502
3
HOH
HOH
502
A
HOH
503
3
HOH
HOH
503
A
HOH
504
3
HOH
HOH
504
A
HOH
505
3
HOH
HOH
505
A
HOH
506
3
HOH
HOH
506
A
HOH
507
3
HOH
HOH
507
A
HOH
508
3
HOH
HOH
508
A
HOH
509
3
HOH
HOH
509
A
HOH
510
3
HOH
HOH
510
A
HOH
511
3
HOH
HOH
511
A
HOH
512
3
HOH
HOH
512
A
HOH
513
3
HOH
HOH
513
A
HOH
514
3
HOH
HOH
514
A
HOH
515
3
HOH
HOH
515
A
HOH
516
3
HOH
HOH
516
A
HOH
517
3
HOH
HOH
517
A
HOH
518
3
HOH
HOH
518
A
HOH
519
3
HOH
HOH
519
A
HOH
520
3
HOH
HOH
520
A
HOH
521
3
HOH
HOH
521
A
HOH
522
3
HOH
HOH
522
A
HOH
523
3
HOH
HOH
523
A
HOH
524
3
HOH
HOH
524
A
HOH
525
3
HOH
HOH
525
A
HOH
526
3
HOH
HOH
526
A
HOH
527
3
HOH
HOH
527
A
HOH
528
3
HOH
HOH
528
A
HOH
529
3
HOH
HOH
529
A
HOH
530
3
HOH
HOH
530
A
HOH
531
3
HOH
HOH
531
A
HOH
532
3
HOH
HOH
532
A
HOH
533
3
HOH
HOH
533
A
HOH
534
3
HOH
HOH
534
A
HOH
535
3
HOH
HOH
535
A
HOH
536
3
HOH
HOH
536
A
HOH
537
3
HOH
HOH
537
A
HOH
538
3
HOH
HOH
538
A
HOH
539
3
HOH
HOH
539
A
HOH
540
3
HOH
HOH
540
A
HOH
541
3
HOH
HOH
541
A
HOH
542
3
HOH
HOH
542
A
HOH
543
3
HOH
HOH
543
A
HOH
544
3
HOH
HOH
544
A
HOH
545
3
HOH
HOH
545
A
HOH
546
3
HOH
HOH
546
A
HOH
547
3
HOH
HOH
547
A
HOH
548
3
HOH
HOH
548
A
HOH
549
3
HOH
HOH
549
A
HOH
550
3
HOH
HOH
550
A
HOH
551
3
HOH
HOH
551
A
HOH
552
3
HOH
HOH
552
A
HOH
553
3
HOH
HOH
553
A
HOH
554
3
HOH
HOH
554
A
HOH
555
3
HOH
HOH
555
A
HOH
556
3
HOH
HOH
556
A
HOH
557
3
HOH
HOH
557
A
HOH
558
3
HOH
HOH
558
A
HOH
559
3
HOH
HOH
559
A
HOH
560
3
HOH
HOH
560
A
HOH
561
3
HOH
HOH
561
A
HOH
562
3
HOH
HOH
562
A
HOH
563
3
HOH
HOH
563
A
HOH
564
3
HOH
HOH
564
A
HOH
565
3
HOH
HOH
565
A
HOH
566
3
HOH
HOH
566
A
HOH
567
3
HOH
HOH
567
A
HOH
568
3
HOH
HOH
568
A
HOH
569
3
HOH
HOH
569
A
HOH
570
3
HOH
HOH
570
A
HOH
571
3
HOH
HOH
571
A
HOH
572
3
HOH
HOH
572
A
HOH
573
3
HOH
HOH
573
A
HOH
574
3
HOH
HOH
574
A
HOH
575
3
HOH
HOH
575
A
HOH
576
3
HOH
HOH
576
A
HOH
577
3
HOH
HOH
577
A
HOH
578
3
HOH
HOH
578
A
HOH
579
3
HOH
HOH
579
A
HOH
580
3
HOH
HOH
580
A
HOH
581
3
HOH
HOH
581
A
HOH
582
3
HOH
HOH
582
A
HOH
583
3
HOH
HOH
583
A
HOH
584
3
HOH
HOH
584
A
HOH
585
3
HOH
HOH
585
A
HOH
586
3
HOH
HOH
586
A
HOH
587
3
HOH
HOH
587
A
HOH
588
3
HOH
HOH
588
A
HOH
589
3
HOH
HOH
589
A
HOH
591
3
HOH
HOH
591
A
HOH
592
3
HOH
HOH
592
A
HOH
593
3
HOH
HOH
593
A
HOH
594
3
HOH
HOH
594
A
HOH
595
3
HOH
HOH
595
A
HOH
596
3
HOH
HOH
596
A
HOH
597
3
HOH
HOH
597
A
HOH
598
3
HOH
HOH
598
A
HOH
599
3
HOH
HOH
599
A
HOH
600
3
HOH
HOH
600
A
HOH
601
3
HOH
HOH
601
A
HOH
602
3
HOH
HOH
602
A
HOH
603
3
HOH
HOH
603
A
HOH
604
3
HOH
HOH
604
A
HOH
605
3
HOH
HOH
605
A
HOH
606
3
HOH
HOH
606
A
HOH
607
3
HOH
HOH
607
A
HOH
608
3
HOH
HOH
608
A
HOH
609
3
HOH
HOH
609
A
HOH
610
3
HOH
HOH
610
A
HOH
611
3
HOH
HOH
611
A
HOH
612
3
HOH
HOH
612
A
HOH
613
3
HOH
HOH
613
A
HOH
614
3
HOH
HOH
614
A
HOH
615
3
HOH
HOH
615
A
HOH
616
3
HOH
HOH
616
A
HOH
617
3
HOH
HOH
617
A
HOH
618
3
HOH
HOH
618
A
HOH
619
3
HOH
HOH
619
A
HOH
620
3
HOH
HOH
620
A
HOH
621
3
HOH
HOH
621
A
HOH
622
3
HOH
HOH
622
A
HOH
623
3
HOH
HOH
623
A
HOH
624
3
HOH
HOH
624
A
HOH
625
3
HOH
HOH
625
A
HOH
626
3
HOH
HOH
626
A
HOH
627
3
HOH
HOH
627
A
HOH
628
3
HOH
HOH
628
A
HOH
629
3
HOH
HOH
629
A
HOH
630
3
HOH
HOH
630
A
HOH
631
3
HOH
HOH
631
A
HOH
632
3
HOH
HOH
632
A
HOH
633
3
HOH
HOH
633
A
HOH
634
3
HOH
HOH
634
A
HOH
635
3
HOH
HOH
635
A
HOH
636
3
HOH
HOH
636
A
HOH
637
3
HOH
HOH
637
A
HOH
638
3
HOH
HOH
638
A
HOH
639
3
HOH
HOH
639
A
HOH
640
3
HOH
HOH
640
A
HOH
641
3
HOH
HOH
641
A
HOH
642
3
HOH
HOH
642
A
HOH
643
3
HOH
HOH
643
A
HOH
644
3
HOH
HOH
644
A
HOH
645
3
HOH
HOH
645
A
HOH
646
3
HOH
HOH
646
A
HOH
647
3
HOH
HOH
647
A
HOH
648
3
HOH
HOH
648
A
HOH
649
3
HOH
HOH
649
A
HOH
650
3
HOH
HOH
650
A
HOH
651
3
HOH
HOH
651
A
HOH
652
3
HOH
HOH
652
A
HOH
653
3
HOH
HOH
653
A
HOH
654
3
HOH
HOH
654
A
HOH
655
3
HOH
HOH
655
A
HOH
656
3
HOH
HOH
656
A
HOH
657
3
HOH
HOH
657
A
HOH
658
3
HOH
HOH
658
A
HOH
659
3
HOH
HOH
659
A
HOH
660
3
HOH
HOH
660
A
HOH
661
3
HOH
HOH
661
A
HOH
662
3
HOH
HOH
662
A
HOH
663
3
HOH
HOH
663
A
HOH
664
3
HOH
HOH
664
A
HOH
665
3
HOH
HOH
665
A
HOH
666
3
HOH
HOH
666
A
HOH
667
3
HOH
HOH
667
A
HOH
668
3
HOH
HOH
668
A
HOH
669
3
HOH
HOH
669
A
HOH
670
3
HOH
HOH
670
A
HOH
671
3
HOH
HOH
671
A
HOH
672
3
HOH
HOH
672
A
HOH
673
3
HOH
HOH
673
A
HOH
674
3
HOH
HOH
674
A
HOH
675
3
HOH
HOH
675
A
HOH
676
3
HOH
HOH
676
A
HOH
677
3
HOH
HOH
677
A
HOH
678
3
HOH
HOH
678
A
HOH
679
3
HOH
HOH
679
A
HOH
680
3
HOH
HOH
680
A
HOH
681
3
HOH
HOH
681
A
HOH
682
3
HOH
HOH
682
A
HOH
683
3
HOH
HOH
683
A
HOH
684
3
HOH
HOH
684
A
HOH
685
3
HOH
HOH
685
A
HOH
686
3
HOH
HOH
686
A
HOH
687
3
HOH
HOH
687
A
HOH
688
3
HOH
HOH
688
A
HOH
689
3
HOH
HOH
689
A
HOH
690
3
HOH
HOH
690
A
HOH
691
3
HOH
HOH
691
A
HOH
692
3
HOH
HOH
692
A
HOH
693
3
HOH
HOH
693
A
HOH
694
3
HOH
HOH
694
A
HOH
695
3
HOH
HOH
695
A
HOH
696
3
HOH
HOH
696
A
HOH
697
3
HOH
HOH
697
A
HOH
698
3
HOH
HOH
698
A
HOH
699
3
HOH
HOH
699
A
HOH
700
3
HOH
HOH
700
A
HOH
701
3
HOH
HOH
701
A
HOH
702
3
HOH
HOH
702
A
HOH
703
3
HOH
HOH
703
A
HOH
704
3
HOH
HOH
704
A
HOH
705
3
HOH
HOH
705
A
HOH
706
3
HOH
HOH
706
A
HOH
707
3
HOH
HOH
707
A
HOH
708
3
HOH
HOH
708
A
HOH
709
3
HOH
HOH
709
A
HOH
710
3
HOH
HOH
710
A
HOH
711
3
HOH
HOH
711
A
HOH
712
3
HOH
HOH
712
A
HOH
713
3
HOH
HOH
713
A
HOH
714
3
HOH
HOH
714
A
HOH
715
3
HOH
HOH
715
A
HOH
716
3
HOH
HOH
716
A
HOH
717
3
HOH
HOH
717
A
HOH
718
3
HOH
HOH
718
A
HOH
719
3
HOH
HOH
719
A
HOH
720
3
HOH
HOH
720
A
HOH
721
3
HOH
HOH
721
A
HOH
722
3
HOH
HOH
722
A
HOH
723
3
HOH
HOH
723
A
HOH
724
3
HOH
HOH
724
A
HOH
725
3
HOH
HOH
725
A
HOH
726
3
HOH
HOH
726
A
HOH
727
3
HOH
HOH
727
A
HOH
728
3
HOH
HOH
728
A
HOH
729
3
HOH
HOH
729
A
HOH
730
3
HOH
HOH
730
A
HOH
731
3
HOH
HOH
731
A
HOH
732
3
HOH
HOH
732
A
HOH
733
3
HOH
HOH
733
A
HOH
734
3
HOH
HOH
734
A
HOH
735
3
HOH
HOH
735
A
HOH
736
3
HOH
HOH
736
A
HOH
737
3
HOH
HOH
737
A
HOH
738
3
HOH
HOH
738
A
HOH
739
3
HOH
HOH
739
A
HOH
740
3
HOH
HOH
740
A
HOH
741
3
HOH
HOH
741
A
THR
21
n
1
THR
21
A
ALA
22
n
2
ALA
22
A
LEU
23
n
3
LEU
23
A
PRO
24
n
4
PRO
24
A
ALA
25
n
5
ALA
25
A
PHE
26
n
6
PHE
26
A
ASN
27
n
7
ASN
27
A
VAL
28
n
8
VAL
28
A
ASN
29
n
9
ASN
29
A
PRO
30
n
10
PRO
30
A
ASN
31
n
11
ASN
31
A
SER
32
n
12
SER
32
A
VAL
33
n
13
VAL
33
A
SER
34
n
14
SER
34
A
VAL
35
n
15
VAL
35
A
SER
36
n
16
SER
36
A
GLY
37
n
17
GLY
37
A
LEU
38
n
18
LEU
38
A
SER
39
n
19
SER
39
A
SER
40
n
20
SER
40
A
GLY
41
n
21
GLY
41
A
GLY
42
n
22
GLY
42
A
TYR
43
n
23
TYR
43
A
MET
44
n
24
MET
44
A
ALA
45
n
25
ALA
45
A
ALA
46
n
26
ALA
46
A
GLN
47
n
27
GLN
47
A
LEU
48
n
28
LEU
48
A
GLY
49
n
29
GLY
49
A
VAL
50
n
30
VAL
50
A
ALA
51
n
31
ALA
51
A
TYR
52
n
32
TYR
52
A
SER
53
n
33
SER
53
A
ASP
54
n
34
ASP
54
A
VAL
55
n
35
VAL
55
A
PHE
56
n
36
PHE
56
A
ASN
57
n
37
ASN
57
A
VAL
58
n
38
VAL
58
A
GLY
59
n
39
GLY
59
A
PHE
60
n
40
PHE
60
A
GLY
61
n
41
GLY
61
A
VAL
62
n
42
VAL
62
A
PHE
63
n
43
PHE
63
A
ALA
64
n
44
ALA
64
A
GLY
65
n
45
GLY
65
A
GLY
66
n
46
GLY
66
A
PRO
67
n
47
PRO
67
A
TYR
68
n
48
TYR
68
A
ASP
69
n
49
ASP
69
A
CYS
70
n
50
CYS
70
A
ALA
71
n
51
ALA
71
A
ARG
72
n
52
ARG
72
A
ASN
73
n
53
ASN
73
A
GLN
74
n
54
GLN
74
A
TYR
75
n
55
TYR
75
A
TYR
76
n
56
TYR
76
A
THR
77
n
57
THR
77
A
SER
78
n
58
SER
78
A
CYS
79
n
59
CYS
79
A
MET
80
n
60
MET
80
A
TYR
81
n
61
TYR
81
A
ASN
82
n
62
ASN
82
A
GLY
83
n
63
GLY
83
A
TYR
84
n
64
TYR
84
A
PRO
85
n
65
PRO
85
A
SER
86
n
66
SER
86
A
ILE
87
n
67
ILE
87
A
THR
88
n
68
THR
88
A
THR
89
n
69
THR
89
A
PRO
90
n
70
PRO
90
A
THR
91
n
71
THR
91
A
ALA
92
n
72
ALA
92
A
ASN
93
n
73
ASN
93
A
MET
94
n
74
MET
94
A
LYS
95
n
75
LYS
95
A
SER
96
n
76
SER
96
A
TRP
97
n
77
TRP
97
A
SER
98
n
78
SER
98
A
GLY
99
n
79
GLY
99
A
ASN
100
n
80
ASN
100
A
GLN
101
n
81
GLN
101
A
ILE
102
n
82
ILE
102
A
ALA
103
n
83
ALA
103
A
SER
104
n
84
SER
104
A
VAL
105
n
85
VAL
105
A
ALA
106
n
86
ALA
106
A
ASN
107
n
87
ASN
107
A
LEU
108
n
88
LEU
108
A
GLY
109
n
89
GLY
109
A
GLN
110
n
90
GLN
110
A
ARG
111
n
91
ARG
111
A
LYS
112
n
92
LYS
112
A
ILE
113
n
93
ILE
113
A
TYR
114
n
94
TYR
114
A
MET
115
n
95
MET
115
A
TRP
116
n
96
TRP
116
A
THR
117
n
97
THR
117
A
GLY
118
n
98
GLY
118
A
SER
119
n
99
SER
119
A
SER
120
n
100
SER
120
A
ASP
121
n
101
ASP
121
A
THR
122
n
102
THR
122
A
THR
123
n
103
THR
123
A
VAL
124
n
104
VAL
124
A
GLY
125
n
105
GLY
125
A
PRO
126
n
106
PRO
126
A
ASN
127
n
107
ASN
127
A
VAL
128
n
108
VAL
128
A
MET
129
n
109
MET
129
A
ASN
130
n
110
ASN
130
A
GLN
131
n
111
GLN
131
A
LEU
132
n
112
LEU
132
A
LYS
133
n
113
LYS
133
A
ALA
134
n
114
ALA
134
A
GLN
135
n
115
GLN
135
A
LEU
136
n
116
LEU
136
A
GLY
137
n
117
GLY
137
A
ASN
138
n
118
ASN
138
A
PHE
139
n
119
PHE
139
A
ASP
140
n
120
ASP
140
A
ASN
141
n
121
ASN
141
A
SER
142
n
122
SER
142
A
ALA
143
n
123
ALA
143
A
ASN
144
n
124
ASN
144
A
VAL
145
n
125
VAL
145
A
SER
146
n
126
SER
146
A
TYR
147
n
127
TYR
147
A
VAL
148
n
128
VAL
148
A
THR
149
n
129
THR
149
A
THR
150
n
130
THR
150
A
THR
151
n
131
THR
151
A
GLY
152
n
132
GLY
152
A
ALA
153
n
133
ALA
153
A
VAL
154
n
134
VAL
154
A
HIS
155
n
135
HIS
155
A
THR
156
n
136
THR
156
A
PHE
157
n
137
PHE
157
A
PRO
158
n
138
PRO
158
A
THR
159
n
139
THR
159
A
ASP
160
n
140
ASP
160
A
PHE
161
n
141
PHE
161
A
ASN
162
n
142
ASN
162
A
GLY
163
n
143
GLY
163
A
ALA
164
n
144
ALA
164
A
GLY
165
n
145
GLY
165
A
ASP
166
n
146
ASP
166
A
ASN
167
n
147
ASN
167
A
SER
168
n
148
SER
168
A
CYS
169
n
149
CYS
169
A
SER
170
n
150
SER
170
A
LEU
171
n
151
LEU
171
A
SER
172
n
152
SER
172
A
THR
173
n
153
THR
173
A
SER
174
n
154
SER
174
A
PRO
175
n
155
PRO
175
A
TYR
176
n
156
TYR
176
A
ILE
177
n
157
ILE
177
A
SER
178
n
158
SER
178
A
ASN
179
n
159
ASN
179
A
CYS
180
n
160
CYS
180
A
ASN
181
n
161
ASN
181
A
TYR
182
n
162
TYR
182
A
ASP
183
n
163
ASP
183
A
GLY
184
n
164
GLY
184
A
ALA
185
n
165
ALA
185
A
GLY
186
n
166
GLY
186
A
ALA
187
n
167
ALA
187
A
ALA
188
n
168
ALA
188
A
LEU
189
n
169
LEU
189
A
LYS
190
n
170
LYS
190
A
TRP
191
n
171
TRP
191
A
ILE
192
n
172
ILE
192
A
TYR
193
n
173
TYR
193
A
GLY
194
n
174
GLY
194
A
SER
195
n
175
SER
195
A
LEU
196
n
176
LEU
196
A
ASN
197
n
177
ASN
197
A
ALA
198
n
178
ALA
198
A
ARG
199
n
179
ARG
199
A
ASN
200
n
180
ASN
200
A
THR
201
n
181
THR
201
A
GLY
202
n
182
GLY
202
A
THR
203
n
183
THR
203
A
LEU
204
n
184
LEU
204
A
SER
205
n
185
SER
205
A
GLY
206
n
186
GLY
206
A
SER
207
n
187
SER
207
A
VAL
208
n
188
VAL
208
A
LEU
209
n
189
LEU
209
A
SER
210
n
190
SER
210
A
PHE
211
n
191
PHE
211
A
ALA
212
n
192
ALA
212
A
GLN
213
n
193
GLN
213
A
SER
214
n
194
SER
214
A
GLY
215
n
195
GLY
215
A
SER
216
n
196
SER
216
A
TYR
217
n
197
TYR
217
A
GLY
218
n
198
GLY
218
A
ALA
219
n
199
ALA
219
A
ASN
220
n
200
ASN
220
A
GLY
221
n
201
GLY
221
A
MET
222
n
202
MET
222
A
ASP
223
n
203
ASP
223
A
THR
224
n
204
THR
224
A
THR
225
n
205
THR
225
A
GLY
226
n
206
GLY
226
A
TYR
227
n
207
TYR
227
A
LEU
228
n
208
LEU
228
A
TYR
229
n
209
TYR
229
A
VAL
230
n
210
VAL
230
A
PRO
231
n
211
PRO
231
A
GLN
232
n
212
GLN
232
A
SER
233
n
213
SER
233
A
CYS
234
n
214
CYS
234
A
ALA
235
n
215
ALA
235
A
SER
236
n
216
SER
236
A
GLY
237
n
217
GLY
237
A
ALA
238
n
218
ALA
238
A
THR
239
n
219
THR
239
A
VAL
240
n
220
VAL
240
A
CYS
241
n
221
CYS
241
A
SER
242
n
222
SER
242
A
LEU
243
n
223
LEU
243
A
HIS
244
n
224
HIS
244
A
VAL
245
n
225
VAL
245
A
ALA
246
n
226
ALA
246
A
LEU
247
n
227
LEU
247
A
HIS
248
n
228
HIS
248
A
GLY
249
n
229
GLY
249
A
CYS
250
n
230
CYS
250
A
LEU
251
n
231
LEU
251
A
GLN
252
n
232
GLN
252
A
SER
253
n
233
SER
253
A
TYR
254
n
234
TYR
254
A
SER
255
n
235
SER
255
A
SER
256
n
236
SER
256
A
ILE
257
n
237
ILE
257
A
GLY
258
n
238
GLY
258
A
SER
259
n
239
SER
259
A
ARG
260
n
240
ARG
260
A
PHE
261
n
241
PHE
261
A
ILE
262
n
242
ILE
262
A
GLN
263
n
243
GLN
263
A
ASN
264
n
244
ASN
264
A
THR
265
n
245
THR
265
A
GLY
266
n
246
GLY
266
A
TYR
267
n
247
TYR
267
A
ASN
268
n
248
ASN
268
A
LYS
269
n
249
LYS
269
A
TRP
270
n
250
TRP
270
A
ALA
271
n
251
ALA
271
A
ASP
272
n
252
ASP
272
A
THR
273
n
253
THR
273
A
ASN
274
n
254
ASN
274
A
ASN
275
n
255
ASN
275
A
MET
276
n
256
MET
276
A
ILE
277
n
257
ILE
277
A
ILE
278
n
258
ILE
278
A
LEU
279
n
259
LEU
279
A
TYR
280
n
260
TYR
280
A
PRO
281
n
261
PRO
281
A
GLN
282
n
262
GLN
282
A
ALA
283
n
263
ALA
283
A
ILE
284
n
264
ILE
284
A
PRO
285
n
265
PRO
285
A
ASP
286
n
266
ASP
286
A
TYR
287
n
267
TYR
287
A
THR
288
n
268
THR
288
A
ILE
289
n
269
ILE
289
A
HIS
290
n
270
HIS
290
A
ALA
291
n
271
ALA
291
A
ILE
292
n
272
ILE
292
A
TRP
293
n
273
TRP
293
A
ASN
294
n
274
ASN
294
A
GLY
295
n
275
GLY
295
A
GLY
296
n
276
GLY
296
A
VAL
297
n
277
VAL
297
A
LEU
298
n
278
LEU
298
A
SER
299
n
279
SER
299
A
ASN
300
n
280
ASN
300
A
PRO
301
n
281
PRO
301
A
ASN
302
n
282
ASN
302
A
GLY
303
n
283
GLY
303
A
CYS
304
n
284
CYS
304
A
TRP
305
n
285
TRP
305
A
ASP
306
n
286
ASP
306
A
TRP
307
n
287
TRP
307
A
VAL
308
n
288
VAL
308
A
GLY
309
n
289
GLY
309
A
TRP
310
n
290
TRP
310
A
TYR
311
n
291
TYR
311
A
GLY
312
n
292
GLY
312
A
SER
313
n
293
SER
313
A
ASN
314
n
294
ASN
314
A
ALA
315
n
295
ALA
315
A
ASP
316
n
296
ASP
316
A
GLN
317
n
297
GLN
317
A
ILE
318
n
298
ILE
318
A
GLY
319
n
299
GLY
319
A
GLY
320
n
300
GLY
320
A
VAL
321
n
301
VAL
321
A
GLN
322
n
302
GLN
322
A
MET
323
n
303
MET
323
A
ALA
324
n
304
ALA
324
A
ALA
325
n
305
ALA
325
A
ILE
326
n
306
ILE
326
A
VAL
327
n
307
VAL
327
A
GLY
328
n
308
GLY
328
A
GLN
329
n
309
GLN
329
A
VAL
330
n
310
VAL
330
A
LYS
331
n
311
LYS
331
A
GLN
332
n
312
GLN
332
A
ILE
333
n
313
ILE
333
A
VAL
334
n
314
VAL
334
A
SER
335
n
315
SER
335
A
GLY
336
n
316
GLY
336
A
PHE
337
n
317
PHE
337
A
GLN
338
n
318
GLN
338
A
author_defined_assembly
1
monomeric
A
ASN
144
GLYCOSYLATION SITE
A
ASN
124
ASN
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
VAL
148
A
O
VAL
128
A
N
MET
115
A
N
MET
95
A
O
TYR
114
A
O
TYR
94
A
N
VAL
62
A
N
VAL
42
A
O
PHE
63
A
O
PHE
43
A
N
GLY
37
A
N
GLY
17
A
N
SER
36
A
N
SER
16
A
O
LEU
247
A
O
LEU
227
A
N
ALA
246
A
N
ALA
226
A
O
LEU
279
A
O
LEU
259
A
O
TYR
280
A
O
TYR
260
A
N
TYR
227
A
N
TYR
207
A
O
GLY
226
A
O
GLY
206
A
N
PHE
211
A
N
PHE
191
A
N
PHE
157
A
N
PHE
137
A
O
SER
178
A
O
SER
158
A
N
HIS
290
A
N
HIS
270
A
O
LEU
298
A
O
LEU
278
1
A
SER
39
61.94
-129.26
1
A
TYR
52
-112.31
50.76
1
A
ASN
100
-126.36
-88.45
1
A
VAL
124
-109.10
-78.31
1
A
LEU
251
59.08
17.73
protein_rep.param_dih
protein.top_dih
water_rep.param
water_rep.top
carbohydrate.param
carbohydrate.top
18.3
2.31
0.00
2.47
3.14
0.00
-5.46
0.204
0.004
0.174
0.174
1.70
38.89
2723
27251
10.0
99.9
RANDOM
998709.60
0.000000
1
RESTRAINED
THROUGHOUT
0.0
SIRAS
Engh & Huber
FLAT MODEL
42.2712
0.381327
0.21
0.17
5.00
0.20
0.17
1.70
38.89
240
2658
61
0
2357
0.005
0.9
24.2
0.66
0.99
1.50
1.35
2.00
1.61
2.00
2.19
2.50
0.287
0.013
0.253
1.81
489
4016
4016
6
10.9
99.8
16.6
1.7
38.9
2D80
27251
0.0
0.072
1
28.4
99.9
0.36
1.70
1.76
4.64
1
99.6
refinement
CNS
1.1
data reduction
HKL-2000
data scaling
SCALEPACK
phasing
SOLVE
PHB depolymerase (E.C.3.1.1.75)
Crystal structure of PHB depolymerase from Penicillium funiculosum
1
N
N
2
N
N
3
N
N
A
SER
39
A
SER
19
HELX_P
A
TYR
52
A
TYR
32
1
1
14
A
TYR
75
A
TYR
55
HELX_P
A
MET
80
A
MET
60
5
2
6
A
ILE
87
A
ILE
67
HELX_P
A
SER
98
A
SER
78
1
3
12
A
SER
104
A
SER
84
HELX_P
A
ARG
111
A
ARG
91
5
4
8
A
GLY
125
A
GLY
105
HELX_P
A
GLY
137
A
GLY
117
1
5
13
A
ASN
141
A
ASN
121
HELX_P
A
ALA
143
A
ALA
123
5
6
3
A
ASP
183
A
ASP
163
HELX_P
A
GLY
194
A
GLY
174
1
7
12
A
SER
214
A
SER
194
HELX_P
A
GLY
218
A
GLY
198
5
8
5
A
PRO
231
A
PRO
211
HELX_P
A
SER
236
A
SER
216
1
9
6
A
SER
253
A
SER
233
HELX_P
A
GLY
258
A
GLY
238
1
10
6
A
SER
259
A
SER
239
HELX_P
A
THR
265
A
THR
245
1
11
7
A
GLY
266
A
GLY
246
HELX_P
A
ASP
272
A
ASP
252
1
12
7
A
GLY
320
A
GLY
300
HELX_P
A
SER
335
A
SER
315
1
13
16
disulf
2.041
A
CYS
70
A
SG
CYS
50
1_555
A
CYS
79
A
SG
CYS
59
1_555
disulf
2.030
A
CYS
169
A
SG
CYS
149
1_555
A
CYS
180
A
SG
CYS
160
1_555
disulf
2.031
A
CYS
234
A
SG
CYS
214
1_555
A
CYS
241
A
SG
CYS
221
1_555
disulf
2.044
A
CYS
250
A
SG
CYS
230
1_555
A
CYS
304
A
SG
CYS
284
1_555
covale
1.448
one
N-Glycosylation
A
ASN
144
A
ND2
ASN
124
1_555
B
NAG
1
B
C1
NAG
1_555
covale
1.382
both
B
NAG
1
B
O4
NAG
1_555
B
NAG
2
B
C1
NAG
1_555
covale
1.388
both
B
NAG
2
B
O4
NAG
1_555
B
BMA
3
B
C1
BMA
1_555
covale
1.400
both
B
BMA
3
B
O3
BMA
1_555
B
MAN
4
B
C1
MAN
1_555
covale
1.400
both
B
BMA
3
B
O6
BMA
1_555
B
MAN
5
B
C1
MAN
1_555
HYDROLASE
alpha/beta hydrolase fold, circular permutation, HYDROLASE
A
SER
174
A
SER
154
1
A
PRO
175
A
PRO
155
0.41
Q4W9V8_ASPFU
UNP
1
66
Q4W9V8
66
375
2D80
22
330
Q4W9V8
A
1
2
310
8
2
2
parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
parallel
anti-parallel
A
VAL
145
A
VAL
125
A
THR
150
A
THR
130
A
LYS
112
A
LYS
92
A
GLY
118
A
GLY
98
A
GLY
59
A
GLY
39
A
PHE
63
A
PHE
43
A
VAL
28
A
VAL
8
A
LEU
38
A
LEU
18
A
CYS
241
A
CYS
221
A
LEU
247
A
LEU
227
A
MET
276
A
MET
256
A
TYR
280
A
TYR
260
A
THR
225
A
THR
205
A
VAL
230
A
VAL
210
A
SER
207
A
SER
187
A
ALA
212
A
ALA
192
A
PHE
157
A
PHE
137
A
THR
159
A
THR
139
A
ILE
177
A
ILE
157
A
ASN
179
A
ASN
159
A
ASP
286
A
ASP
266
A
ALA
291
A
ALA
271
A
VAL
297
A
VAL
277
A
ASN
300
A
ASN
280
4
P 1 21 1