0.017323 0.000000 0.000000 0.000000 0.017323 0.000000 0.000000 0.000000 0.006624 0.00000 0.00000 0.00000 Miyatake, H. Hasegawa, T. Yamano, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 57.727 57.727 150.955 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking I -1 126.904 IODIDE ION non-polymer C9 H10 I N O3 307.085 n 3-IODO-TYROSINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H9 I2 N O3 432.982 n 3,5-DIIODOTYROSINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking DK ACTA CRYSTALLOGR.,SECT.D ABCRE6 0766 0907-4449 62 280 289 10.1107/S0907444905041909 16510975 New methods to prepare iodinated derivatives by vaporizing iodine labelling (VIL) and hydrogen peroxide VIL (HYPER-VIL) 2006 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 Osmic Cu CMF IMAGE PLATE 2004-04-01 RIGAKU RAXIS IV++ Osmic Cu CMF SINGLE WAVELENGTH M x-ray 1 1.54182 1.0 1.54182 ROTATING ANODE RIGAKU RU300 23360.133 Thaumatin I 1 nat polymer 126.904 IODIDE ION 5 syn non-polymer 18.015 water 36 nat water no yes ATFEIVNRCS(TYI)TVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDC(TYI)FDDSGSGICKTGDCG GLLRCKRFGRPPTTLAEFSLNQ(TYI)GKD(TYI)IDISNIKGFNVPMNFSPTTRGCRGVRCAADIVGQCPAKLKAPGGG CNDACTVFQTSEYCCTTGKCGPTE(IYR)SRFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCPTA ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFDDSGSGICKTGDCGGLLRCKRF GRPPTTLAEFSLNQYGKDYIDISNIKGFNVPMNFSPTTRGCRGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCT TGKCGPTEYSRFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCPTA A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n miracle fruit Thaumatococcus sample 4621 Thaumatococcus daniellii 1 2.69 54.28 VAPOR DIFFUSION, HANGING DROP 7.5 0.8M K/Na tartrate, 0.1M Na HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 repository Initial release Version format compliance Version format compliance 1 0 2006-07-11 1 1 2008-04-30 1 2 2011-07-13 PDBJ Y PDBJ 2005-12-08 REL REL IOD IODIDE ION HOH water IOD 301 2 IOD IOD 301 A IOD 302 2 IOD IOD 302 A IOD 304 2 IOD IOD 304 A IOD 305 2 IOD IOD 305 A IOD 306 2 IOD IOD 306 A HOH 1 3 HOH HOH 307 A HOH 2 3 HOH HOH 308 A HOH 3 3 HOH HOH 309 A HOH 4 3 HOH HOH 310 A HOH 5 3 HOH HOH 311 A HOH 6 3 HOH HOH 312 A HOH 7 3 HOH HOH 313 A HOH 8 3 HOH HOH 314 A HOH 9 3 HOH HOH 315 A HOH 10 3 HOH HOH 316 A HOH 11 3 HOH HOH 317 A HOH 12 3 HOH HOH 318 A HOH 13 3 HOH HOH 319 A HOH 14 3 HOH HOH 320 A HOH 15 3 HOH HOH 321 A HOH 16 3 HOH HOH 322 A HOH 17 3 HOH HOH 323 A HOH 18 3 HOH HOH 324 A HOH 19 3 HOH HOH 325 A HOH 20 3 HOH HOH 326 A HOH 21 3 HOH HOH 327 A HOH 22 3 HOH HOH 328 A HOH 23 3 HOH HOH 329 A HOH 24 3 HOH HOH 330 A HOH 25 3 HOH HOH 331 A HOH 26 3 HOH HOH 332 A HOH 27 3 HOH HOH 333 A HOH 28 3 HOH HOH 334 A HOH 29 3 HOH HOH 335 A HOH 30 3 HOH HOH 336 A HOH 31 3 HOH HOH 337 A HOH 32 3 HOH HOH 338 A HOH 33 3 HOH HOH 339 A HOH 34 3 HOH HOH 340 A HOH 35 3 HOH HOH 341 A HOH 36 3 HOH HOH 342 A ALA 1 n 1 ALA 1 A THR 2 n 2 THR 2 A PHE 3 n 3 PHE 3 A GLU 4 n 4 GLU 4 A ILE 5 n 5 ILE 5 A VAL 6 n 6 VAL 6 A ASN 7 n 7 ASN 7 A ARG 8 n 8 ARG 8 A CYS 9 n 9 CYS 9 A SER 10 n 10 SER 10 A TYI 11 n 11 TYI 11 A THR 12 n 12 THR 12 A VAL 13 n 13 VAL 13 A TRP 14 n 14 TRP 14 A ALA 15 n 15 ALA 15 A ALA 16 n 16 ALA 16 A ALA 17 n 17 ALA 17 A SER 18 n 18 SER 18 A LYS 19 n 19 LYS 19 A GLY 20 n 20 GLY 20 A ASP 21 n 21 ASP 21 A ALA 22 n 22 ALA 22 A ALA 23 n 23 ALA 23 A LEU 24 n 24 LEU 24 A ASP 25 n 25 ASP 25 A ALA 26 n 26 ALA 26 A GLY 27 n 27 GLY 27 A GLY 28 n 28 GLY 28 A ARG 29 n 29 ARG 29 A GLN 30 n 30 GLN 30 A LEU 31 n 31 LEU 31 A ASN 32 n 32 ASN 32 A SER 33 n 33 SER 33 A GLY 34 n 34 GLY 34 A GLU 35 n 35 GLU 35 A SER 36 n 36 SER 36 A TRP 37 n 37 TRP 37 A THR 38 n 38 THR 38 A ILE 39 n 39 ILE 39 A ASN 40 n 40 ASN 40 A VAL 41 n 41 VAL 41 A GLU 42 n 42 GLU 42 A PRO 43 n 43 PRO 43 A GLY 44 n 44 GLY 44 A THR 45 n 45 THR 45 A ASN 46 n 46 ASN 46 A GLY 47 n 47 GLY 47 A GLY 48 n 48 GLY 48 A LYS 49 n 49 LYS 49 A ILE 50 n 50 ILE 50 A TRP 51 n 51 TRP 51 A ALA 52 n 52 ALA 52 A ARG 53 n 53 ARG 53 A THR 54 n 54 THR 54 A ASP 55 n 55 ASP 55 A CYS 56 n 56 CYS 56 A TYI 57 n 57 TYI 57 A PHE 58 n 58 PHE 58 A ASP 59 n 59 ASP 59 A ASP 60 n 60 ASP 60 A SER 61 n 61 SER 61 A GLY 62 n 62 GLY 62 A SER 63 n 63 SER 63 A GLY 64 n 64 GLY 64 A ILE 65 n 65 ILE 65 A CYS 66 n 66 CYS 66 A LYS 67 n 67 LYS 67 A THR 68 n 68 THR 68 A GLY 69 n 69 GLY 69 A ASP 70 n 70 ASP 70 A CYS 71 n 71 CYS 71 A GLY 72 n 72 GLY 72 A GLY 73 n 73 GLY 73 A LEU 74 n 74 LEU 74 A LEU 75 n 75 LEU 75 A ARG 76 n 76 ARG 76 A CYS 77 n 77 CYS 77 A LYS 78 n 78 LYS 78 A ARG 79 n 79 ARG 79 A PHE 80 n 80 PHE 80 A GLY 81 n 81 GLY 81 A ARG 82 n 82 ARG 82 A PRO 83 n 83 PRO 83 A PRO 84 n 84 PRO 84 A THR 85 n 85 THR 85 A THR 86 n 86 THR 86 A LEU 87 n 87 LEU 87 A ALA 88 n 88 ALA 88 A GLU 89 n 89 GLU 89 A PHE 90 n 90 PHE 90 A SER 91 n 91 SER 91 A LEU 92 n 92 LEU 92 A ASN 93 n 93 ASN 93 A GLN 94 n 94 GLN 94 A TYI 95 n 95 TYI 95 A GLY 96 n 96 GLY 96 A LYS 97 n 97 LYS 97 A ASP 98 n 98 ASP 98 A TYI 99 n 99 TYI 99 A ILE 100 n 100 ILE 100 A ASP 101 n 101 ASP 101 A ILE 102 n 102 ILE 102 A SER 103 n 103 SER 103 A ASN 104 n 104 ASN 104 A ILE 105 n 105 ILE 105 A LYS 106 n 106 LYS 106 A GLY 107 n 107 GLY 107 A PHE 108 n 108 PHE 108 A ASN 109 n 109 ASN 109 A VAL 110 n 110 VAL 110 A PRO 111 n 111 PRO 111 A MET 112 n 112 MET 112 A ASN 113 n 113 ASN 113 A PHE 114 n 114 PHE 114 A SER 115 n 115 SER 115 A PRO 116 n 116 PRO 116 A THR 117 n 117 THR 117 A THR 118 n 118 THR 118 A ARG 119 n 119 ARG 119 A GLY 120 n 120 GLY 120 A CYS 121 n 121 CYS 121 A ARG 122 n 122 ARG 122 A GLY 123 n 123 GLY 123 A VAL 124 n 124 VAL 124 A ARG 125 n 125 ARG 125 A CYS 126 n 126 CYS 126 A ALA 127 n 127 ALA 127 A ALA 128 n 128 ALA 128 A ASP 129 n 129 ASP 129 A ILE 130 n 130 ILE 130 A VAL 131 n 131 VAL 131 A GLY 132 n 132 GLY 132 A GLN 133 n 133 GLN 133 A CYS 134 n 134 CYS 134 A PRO 135 n 135 PRO 135 A ALA 136 n 136 ALA 136 A LYS 137 n 137 LYS 137 A LEU 138 n 138 LEU 138 A LYS 139 n 139 LYS 139 A ALA 140 n 140 ALA 140 A PRO 141 n 141 PRO 141 A GLY 142 n 142 GLY 142 A GLY 143 n 143 GLY 143 A GLY 144 n 144 GLY 144 A CYS 145 n 145 CYS 145 A ASN 146 n 146 ASN 146 A ASP 147 n 147 ASP 147 A ALA 148 n 148 ALA 148 A CYS 149 n 149 CYS 149 A THR 150 n 150 THR 150 A VAL 151 n 151 VAL 151 A PHE 152 n 152 PHE 152 A GLN 153 n 153 GLN 153 A THR 154 n 154 THR 154 A SER 155 n 155 SER 155 A GLU 156 n 156 GLU 156 A TYR 157 n 157 TYR 157 A CYS 158 n 158 CYS 158 A CYS 159 n 159 CYS 159 A THR 160 n 160 THR 160 A THR 161 n 161 THR 161 A GLY 162 n 162 GLY 162 A LYS 163 n 163 LYS 163 A CYS 164 n 164 CYS 164 A GLY 165 n 165 GLY 165 A PRO 166 n 166 PRO 166 A THR 167 n 167 THR 167 A GLU 168 n 168 GLU 168 A IYR 169 n 169 IYR 169 A SER 170 n 170 SER 170 A ARG 171 n 171 ARG 171 A PHE 172 n 172 PHE 172 A PHE 173 n 173 PHE 173 A LYS 174 n 174 LYS 174 A ARG 175 n 175 ARG 175 A LEU 176 n 176 LEU 176 A CYS 177 n 177 CYS 177 A PRO 178 n 178 PRO 178 A ASP 179 n 179 ASP 179 A ALA 180 n 180 ALA 180 A PHE 181 n 181 PHE 181 A SER 182 n 182 SER 182 A TYR 183 n 183 TYR 183 A VAL 184 n 184 VAL 184 A LEU 185 n 185 LEU 185 A ASP 186 n 186 ASP 186 A LYS 187 n 187 LYS 187 A PRO 188 n 188 PRO 188 A THR 189 n 189 THR 189 A THR 190 n 190 THR 190 A VAL 191 n 191 VAL 191 A THR 192 n 192 THR 192 A CYS 193 n 193 CYS 193 A PRO 194 n 194 PRO 194 A GLY 195 n 195 GLY 195 A SER 196 n 196 SER 196 A SER 197 n 197 SER 197 A ASN 198 n 198 ASN 198 A TYR 199 n 199 TYR 199 A ARG 200 n 200 ARG 200 A VAL 201 n 201 VAL 201 A THR 202 n 202 THR 202 A PHE 203 n 203 PHE 203 A CYS 204 n 204 CYS 204 A PRO 205 n 205 PRO 205 A THR 206 n 206 THR 206 A ALA 207 n 207 ALA 207 A author_defined_assembly 1 monomeric A TYI 11 3,5-DIIODOTYROSINE A TYI 11 TYR A TYI 57 3,5-DIIODOTYROSINE A TYI 57 TYR A TYI 95 3,5-DIIODOTYROSINE A TYI 95 TYR A TYI 99 3,5-DIIODOTYROSINE A TYI 99 TYR A IYR 169 3-IODO-TYROSINE A IYR 169 TYR 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ILE 39 A O ILE 39 A N PHE 3 A N PHE 3 A N VAL 6 A N VAL 6 A O VAL 201 A O VAL 201 A O ARG 200 A O ARG 200 A N SER 115 A N SER 115 A N MET 112 A N MET 112 A O CYS 126 A O CYS 126 A O LEU 31 A O LEU 31 A N VAL 13 A N VAL 13 A N SER 18 A N SER 18 A O LYS 49 A O LYS 49 A N GLY 48 A N GLY 48 A O PHE 90 A O PHE 90 A N GLU 89 A N GLU 89 A O ASP 101 A O ASP 101 A N ILE 102 A N ILE 102 A O PHE 181 A O PHE 181 A O ILE 65 A O ILE 65 A N TYI 57 A N TYI 57 A N GLY 48 A N GLY 48 A O PHE 90 A O PHE 90 A N GLU 89 A N GLU 89 A O ASP 101 A O ASP 101 A N ASP 98 A N ASP 98 A O CYS 193 A O CYS 193 1 A ASP 25 57.16 -141.25 1 A CYS 71 -118.82 79.51 1 A THR 206 -111.04 63.37 IYR2.param protein.top water_rep.param protein_IYR2.top ion.param IYR2.top 24.9 0.30 0.00 0.00 0.30 0.00 -0.60 0.25 0.008 0.214 0.214 2.30 31.70 1052 12013 11989 4.9 99.4 RANDOM 271975.47 0.000000 1 RESTRAINED THROUGHOUT 0.0 SAD Engh & Huber FLAT MODEL 25.6777 0.392464 0.34 0.28 5.00 0.28 0.21 2.30 31.70 36 1600 5 0 1559 0.007 1.4 25.4 0.87 0.294 0.021 0.245 2.44 195 3341 6 5.5 98.0 26.8 2.3000 53.916 2D8P 21518 21518 0.0 0.0 1 99.8 2.30 2.44 98.0 refinement CNS 1.1 data reduction HKL-2000 data scaling SCALEPACK phasing SHARP Thaumatin I Structure of HYPER-VIL-thaumatin 1 N N 2 N N 2 N N 2 N N 2 N N 2 N N 3 N N A ASP 129 A ASP 129 HELX_P A CYS 134 A CYS 134 1 1 6 A PRO 135 A PRO 135 HELX_P A LYS 139 A LYS 139 5 2 5 A ASP 147 A ASP 147 HELX_P A GLN 153 A GLN 153 1 3 7 A THR 154 A THR 154 HELX_P A CYS 159 A CYS 159 1 4 6 A THR 167 A THR 167 HELX_P A CYS 177 A CYS 177 1 5 11 disulf 2.028 A CYS 9 A SG CYS 9 1_555 A CYS 204 A SG CYS 204 1_555 disulf 2.045 A CYS 56 A SG CYS 56 1_555 A CYS 66 A SG CYS 66 1_555 disulf 2.029 A CYS 71 A SG CYS 71 1_555 A CYS 77 A SG CYS 77 1_555 disulf 2.032 A CYS 121 A SG CYS 121 1_555 A CYS 193 A SG CYS 193 1_555 disulf 2.031 A CYS 126 A SG CYS 126 1_555 A CYS 177 A SG CYS 177 1_555 disulf 2.034 A CYS 134 A SG CYS 134 1_555 A CYS 145 A SG CYS 145 1_555 disulf 2.039 A CYS 149 A SG CYS 149 1_555 A CYS 158 A SG CYS 158 1_555 disulf 2.024 A CYS 159 A SG CYS 159 1_555 A CYS 164 A SG CYS 164 1_555 covale 1.332 A SER 10 A C SER 10 1_555 A TYI 11 A N TYI 11 1_555 covale 1.323 A TYI 11 A C TYI 11 1_555 A THR 12 A N THR 12 1_555 covale 1.324 A CYS 56 A C CYS 56 1_555 A TYI 57 A N TYI 57 1_555 covale 1.328 A TYI 57 A C TYI 57 1_555 A PHE 58 A N PHE 58 1_555 covale 1.328 A GLN 94 A C GLN 94 1_555 A TYI 95 A N TYI 95 1_555 covale 1.334 A TYI 95 A C TYI 95 1_555 A GLY 96 A N GLY 96 1_555 covale 1.328 A ASP 98 A C ASP 98 1_555 A TYI 99 A N TYI 99 1_555 covale 1.324 A TYI 99 A C TYI 99 1_555 A ILE 100 A N ILE 100 1_555 covale 1.329 A GLU 168 A C GLU 168 1_555 A IYR 169 A N IYR 169 1_555 covale 1.327 A IYR 169 A C IYR 169 1_555 A SER 170 A N SER 170 1_555 UNKNOWN FUNCTION iodo-tyrosine, HYDROGEN PEROXIDE VAPORIZING IODINE LABELING(HYPER-VIL), UNKNOWN FUNCTION A PRO 83 A PRO 83 1 A PRO 84 A PRO 84 -0.08 THM1_THADA UNP 1 1 P02883 ATFEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFDDSGSGICKTGDCGGLLRCKRF GRPPTTLAEFSLNQYGKDYIDISNIKGFNVPMNFSPTTRGCRGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCT TGKCGPTEYSRFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCPTA 1 207 2D8P 1 207 P02883 A 1 1 207 1 TYR MODIFIED RESIDUE TYI 11 2D8P A P02883 UNP 11 11 1 TYR MODIFIED RESIDUE TYI 57 2D8P A P02883 UNP 57 57 1 TYR MODIFIED RESIDUE TYI 95 2D8P A P02883 UNP 95 95 1 TYR MODIFIED RESIDUE TYI 99 2D8P A P02883 UNP 99 99 1 TYR MODIFIED RESIDUE IYR 169 2D8P A P02883 UNP 169 169 5 6 5 anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel A SER 36 A SER 36 A ASN 40 A ASN 40 A THR 2 A THR 2 A ASN 7 A ASN 7 A TYR 199 A TYR 199 A PHE 203 A PHE 203 A MET 112 A MET 112 A PRO 116 A PRO 116 A VAL 124 A VAL 124 A CYS 126 A CYS 126 A ALA 23 A ALA 23 A LEU 31 A LEU 31 A VAL 13 A VAL 13 A SER 18 A SER 18 A GLY 48 A GLY 48 A PHE 58 A PHE 58 A LEU 87 A LEU 87 A GLN 94 A GLN 94 A LYS 97 A LYS 97 A SER 103 A SER 103 A ALA 180 A ALA 180 A PHE 181 A PHE 181 A GLY 64 A GLY 64 A THR 68 A THR 68 A GLY 48 A GLY 48 A PHE 58 A PHE 58 A LEU 87 A LEU 87 A GLN 94 A GLN 94 A LYS 97 A LYS 97 A SER 103 A SER 103 A VAL 191 A VAL 191 A PRO 194 A PRO 194 BINDING SITE FOR RESIDUE IOD A 301 Software 1 BINDING SITE FOR RESIDUE IOD A 302 Software 1 BINDING SITE FOR RESIDUE IOD A 304 Software 2 BINDING SITE FOR RESIDUE IOD A 305 Software 2 BINDING SITE FOR RESIDUE IOD A 306 Software 1 A ASN 93 A ASN 93 1 1_555 A ARG 125 A ARG 125 1 1_555 A ARG 175 A ARG 175 2 1_555 A IOD 305 E IOD 2 1_555 A IOD 304 D IOD 2 1_555 A IOD 306 F IOD 2 1_555 A IOD 305 E IOD 1 1_555 92 P 41 21 2