1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Nagashima, T. Hayashi, F. Yokoyama, S. RIKEN Structural Genomics/Proteomics Initiative (RSGI) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking to be published 0353 Solution structure of the Death domain of Nuclear factor NF-kappa-B p100 10.2210/pdb2d96/pdb pdb_00002d96 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 11223.271 Nuclear factor NF-kappa-B p100 subunit death domain 1 man polymer no no GSSGSSGPGLSLGDTALQNLEQLLDGPEAQGSWAELAERLGLRSLVDTYRQTTSPSGSLLRSYELAGGDLAGLLEALSDM GLEEGVRLLRGPETRDKLPSTEVSGPSSG GSSGSSGPGLSLGDTALQNLEQLLDGPEAQGSWAELAERLGLRSLVDTYRQTTSPSGSLLRSYELAGGDLAGLLEALSDM GLEEGVRLLRGPETRDKLPSTEVSGPSSG A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo sample Cell-free protein synthesis NFKB2 9606 Homo sapiens plasmid P050404-15 RIKEN Structural Genomics/Proteomics Initiative RSGI NPPSFA, National Project on Protein Structural and Functional Analyses database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2006-12-08 1 1 2008-04-30 1 2 2011-07-13 1 3 2022-03-09 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _struct_ref_seq_dif.details Y PDBJ Y PDBJ 2005-12-08 REL REL target function, structures with the lowest energy 100 20 3D_13C-separated_NOESY 3D_15N-separated_NOESY 120mM 7.0 ambient 298 K torsion angle dynamics 1 lowest energy 1.15mM death domain U-15N, 13C, 20mM TrisHCl, 100mM NaCl, 1mM DTT, 0.02% NaN3 90% H2O/10% D2O Varian collection VNMR 6.1C Delaglio, F. processing NMRPipe 20020425 Johnson, B.A. data analysis NMRView 5.0.4 Kobayashi, N. data analysis KUJIRA 0.901 Guntert, P. structure solution CYANA 2.0.17 Guntert, P. refinement CYANA 2.0.17 900 Varian INOVA 800 Varian INOVA GLY 1 n 1 GLY 1 A SER 2 n 2 SER 2 A SER 3 n 3 SER 3 A GLY 4 n 4 GLY 4 A SER 5 n 5 SER 5 A SER 6 n 6 SER 6 A GLY 7 n 7 GLY 7 A PRO 8 n 8 PRO 8 A GLY 9 n 9 GLY 9 A LEU 10 n 10 LEU 10 A SER 11 n 11 SER 11 A LEU 12 n 12 LEU 12 A GLY 13 n 13 GLY 13 A ASP 14 n 14 ASP 14 A THR 15 n 15 THR 15 A ALA 16 n 16 ALA 16 A LEU 17 n 17 LEU 17 A GLN 18 n 18 GLN 18 A ASN 19 n 19 ASN 19 A LEU 20 n 20 LEU 20 A GLU 21 n 21 GLU 21 A GLN 22 n 22 GLN 22 A LEU 23 n 23 LEU 23 A LEU 24 n 24 LEU 24 A ASP 25 n 25 ASP 25 A GLY 26 n 26 GLY 26 A PRO 27 n 27 PRO 27 A GLU 28 n 28 GLU 28 A ALA 29 n 29 ALA 29 A GLN 30 n 30 GLN 30 A GLY 31 n 31 GLY 31 A SER 32 n 32 SER 32 A TRP 33 n 33 TRP 33 A ALA 34 n 34 ALA 34 A GLU 35 n 35 GLU 35 A LEU 36 n 36 LEU 36 A ALA 37 n 37 ALA 37 A GLU 38 n 38 GLU 38 A ARG 39 n 39 ARG 39 A LEU 40 n 40 LEU 40 A GLY 41 n 41 GLY 41 A LEU 42 n 42 LEU 42 A ARG 43 n 43 ARG 43 A SER 44 n 44 SER 44 A LEU 45 n 45 LEU 45 A VAL 46 n 46 VAL 46 A ASP 47 n 47 ASP 47 A THR 48 n 48 THR 48 A TYR 49 n 49 TYR 49 A ARG 50 n 50 ARG 50 A GLN 51 n 51 GLN 51 A THR 52 n 52 THR 52 A THR 53 n 53 THR 53 A SER 54 n 54 SER 54 A PRO 55 n 55 PRO 55 A SER 56 n 56 SER 56 A GLY 57 n 57 GLY 57 A SER 58 n 58 SER 58 A LEU 59 n 59 LEU 59 A LEU 60 n 60 LEU 60 A ARG 61 n 61 ARG 61 A SER 62 n 62 SER 62 A TYR 63 n 63 TYR 63 A GLU 64 n 64 GLU 64 A LEU 65 n 65 LEU 65 A ALA 66 n 66 ALA 66 A GLY 67 n 67 GLY 67 A GLY 68 n 68 GLY 68 A ASP 69 n 69 ASP 69 A LEU 70 n 70 LEU 70 A ALA 71 n 71 ALA 71 A GLY 72 n 72 GLY 72 A LEU 73 n 73 LEU 73 A LEU 74 n 74 LEU 74 A GLU 75 n 75 GLU 75 A ALA 76 n 76 ALA 76 A LEU 77 n 77 LEU 77 A SER 78 n 78 SER 78 A ASP 79 n 79 ASP 79 A MET 80 n 80 MET 80 A GLY 81 n 81 GLY 81 A LEU 82 n 82 LEU 82 A GLU 83 n 83 GLU 83 A GLU 84 n 84 GLU 84 A GLY 85 n 85 GLY 85 A VAL 86 n 86 VAL 86 A ARG 87 n 87 ARG 87 A LEU 88 n 88 LEU 88 A LEU 89 n 89 LEU 89 A ARG 90 n 90 ARG 90 A GLY 91 n 91 GLY 91 A PRO 92 n 92 PRO 92 A GLU 93 n 93 GLU 93 A THR 94 n 94 THR 94 A ARG 95 n 95 ARG 95 A ASP 96 n 96 ASP 96 A LYS 97 n 97 LYS 97 A LEU 98 n 98 LEU 98 A PRO 99 n 99 PRO 99 A SER 100 n 100 SER 100 A THR 101 n 101 THR 101 A GLU 102 n 102 GLU 102 A VAL 103 n 103 VAL 103 A SER 104 n 104 SER 104 A GLY 105 n 105 GLY 105 A PRO 106 n 106 PRO 106 A SER 107 n 107 SER 107 A SER 108 n 108 SER 108 A GLY 109 n 109 GLY 109 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A ALA 29 -48.49 100.77 1 A LEU 42 -95.10 36.76 1 A SER 54 -119.50 71.35 1 A LEU 82 -58.90 91.13 1 A SER 108 72.63 41.50 2 A SER 5 -123.67 -61.44 2 A SER 6 -66.76 85.64 2 A PRO 8 -69.81 1.71 2 A ALA 29 -48.62 99.69 2 A GLN 30 -39.80 -32.73 2 A VAL 46 -39.09 -25.72 2 A THR 48 -36.63 -34.79 2 A SER 54 -114.66 63.02 2 A SER 56 -93.64 -69.27 2 A LEU 77 -37.94 -39.09 2 A LEU 82 -69.07 71.26 2 A PRO 99 -69.77 84.49 2 A SER 107 37.85 42.61 3 A SER 5 -91.37 45.84 3 A ALA 29 -41.63 102.91 3 A LEU 42 -95.59 40.11 3 A LEU 82 -53.37 94.39 3 A PRO 92 -69.74 -179.07 3 A ARG 95 -35.80 135.12 4 A SER 11 -79.72 46.10 4 A ALA 29 -40.87 103.71 4 A GLN 30 -39.94 -33.29 4 A LEU 42 -91.71 54.00 5 A SER 6 -49.13 169.79 5 A ALA 29 -33.99 112.60 5 A GLN 30 -78.86 44.99 5 A VAL 46 -47.28 -19.90 5 A SER 54 -115.06 77.58 6 A PRO 8 -69.75 1.84 6 A LEU 12 -46.33 157.14 6 A ALA 29 -34.21 111.17 6 A LEU 42 -111.08 53.28 6 A SER 54 -119.11 79.60 6 A LEU 98 -38.78 139.33 6 A PRO 99 -69.76 97.48 7 A SER 5 -37.83 148.44 7 A LEU 10 -37.55 131.08 7 A ALA 29 -52.31 97.70 7 A LEU 42 -114.16 50.05 7 A THR 52 -62.14 -178.07 7 A SER 54 -115.27 77.44 7 A LEU 82 -49.31 94.12 7 A PRO 92 -69.76 -167.29 7 A ARG 95 35.04 42.57 7 A THR 101 -162.29 114.42 8 A SER 2 -49.60 98.72 8 A ALA 29 -50.72 105.39 8 A PRO 99 -69.78 87.99 8 A SER 104 -36.95 130.10 8 A PRO 106 -69.75 -174.23 9 A SER 3 -55.78 102.85 9 A ALA 29 -52.21 101.92 9 A SER 32 -173.53 -179.67 9 A GLU 93 -81.75 43.10 9 A LYS 97 -172.15 141.47 10 A ASP 14 -38.55 -39.79 10 A ALA 29 -34.92 111.21 10 A LEU 42 -105.79 45.36 10 A SER 54 -111.53 69.76 10 A SER 100 -56.88 104.53 11 A ALA 29 -40.85 99.24 11 A LYS 97 -173.68 146.52 11 A SER 107 38.25 51.06 12 A ALA 29 -40.70 103.20 12 A LEU 42 -98.11 49.65 12 A SER 54 -116.33 79.34 12 A ASP 96 -37.36 149.65 12 A SER 100 -39.96 119.50 12 A SER 107 -123.06 -52.01 13 A SER 3 -36.78 137.71 13 A ALA 29 -44.06 109.06 13 A THR 52 -54.65 177.11 13 A LEU 82 -58.72 93.04 13 A PRO 92 -69.77 -172.97 14 A ALA 29 -48.13 108.46 14 A LEU 42 -99.21 54.82 14 A THR 52 -47.71 158.41 14 A SER 54 -119.97 75.96 14 A PRO 106 -69.81 -174.54 14 A SER 108 -84.38 36.36 15 A SER 5 38.13 40.99 15 A GLN 18 -38.31 -35.01 15 A ALA 29 -54.86 94.65 15 A LEU 42 -111.26 50.13 15 A THR 52 -52.64 -179.31 15 A SER 54 -116.26 77.15 15 A PRO 55 -69.79 1.99 15 A ASP 96 -38.52 122.91 15 A LEU 98 -35.42 140.76 15 A VAL 103 -36.12 151.63 16 A SER 11 -76.93 47.85 16 A ALA 29 -34.01 112.46 16 A GLN 30 -80.85 41.83 16 A LEU 42 -100.69 40.83 16 A GLN 51 -58.68 -70.10 16 A THR 52 -53.25 174.45 16 A SER 54 -109.43 71.84 16 A LEU 82 -48.90 93.64 16 A PRO 99 -69.73 98.34 17 A SER 2 -37.98 134.94 17 A SER 11 -36.70 -31.48 17 A LEU 12 -46.38 157.17 17 A ALA 29 -33.74 114.02 17 A GLN 30 -82.56 38.17 17 A LEU 42 -101.10 46.13 17 A SER 56 -39.73 -34.96 17 A LEU 82 -53.82 85.01 17 A VAL 103 -98.33 -61.51 18 A PRO 8 -69.71 0.31 18 A SER 11 -84.07 35.05 18 A ALA 29 -49.50 99.18 18 A LEU 82 -51.07 95.88 18 A PRO 92 -69.76 -173.69 18 A LEU 98 -36.87 153.73 18 A SER 104 -161.67 112.33 18 A SER 107 -39.65 108.10 19 A SER 5 -58.08 -175.06 19 A ALA 29 -52.52 85.03 19 A GLN 30 -33.90 -36.72 19 A LEU 82 -46.64 89.79 19 A LYS 97 35.84 39.76 19 A SER 107 -39.92 149.38 20 A ALA 29 -64.71 95.96 20 A LEU 42 -103.05 51.71 20 A GLN 51 -39.27 -73.18 20 A SER 54 -115.60 78.29 20 A SER 56 -40.07 -71.79 20 A LEU 82 -56.47 87.16 20 A PRO 99 -69.76 97.13 Solution structure of the Death domain of Nuclear factor NF-kappa-B p100 1 N N A GLY 13 A GLY 13 HELX_P A ASP 25 A ASP 25 1 1 13 A SER 32 A SER 32 HELX_P A GLY 41 A GLY 41 1 2 10 A LEU 42 A LEU 42 HELX_P A GLN 51 A GLN 51 1 3 10 A SER 54 A SER 54 HELX_P A ALA 66 A ALA 66 1 4 13 A ASP 69 A ASP 69 HELX_P A GLY 81 A GLY 81 1 5 13 A LEU 82 A LEU 82 HELX_P A GLY 91 A GLY 91 1 6 10 TRANSCRIPTION six helix bundle, processing, proteasome, signal transduction, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, TRANSCRIPTION NFKB2_HUMAN UNP 1 766 Q00653 PGLSLGDTALQNLEQLLDGPEAQGSWAELAERLGLRSLVDTYRQTTSPSGSLLRSYELAGGDLAGLLEALSDMGLEEGVR LLRGPETRDKLPSTEV 766 861 2D96 8 103 Q00653 A 1 8 103 1 cloning artifact GLY 1 2D96 A Q00653 UNP 1 1 cloning artifact SER 2 2D96 A Q00653 UNP 2 1 cloning artifact SER 3 2D96 A Q00653 UNP 3 1 cloning artifact GLY 4 2D96 A Q00653 UNP 4 1 cloning artifact SER 5 2D96 A Q00653 UNP 5 1 cloning artifact SER 6 2D96 A Q00653 UNP 6 1 cloning artifact GLY 7 2D96 A Q00653 UNP 7 1 cloning artifact SER 104 2D96 A Q00653 UNP 104 1 cloning artifact GLY 105 2D96 A Q00653 UNP 105 1 cloning artifact PRO 106 2D96 A Q00653 UNP 106 1 cloning artifact SER 107 2D96 A Q00653 UNP 107 1 cloning artifact SER 108 2D96 A Q00653 UNP 108 1 cloning artifact GLY 109 2D96 A Q00653 UNP 109