0.024881 0.000000 0.009146 0.000000 0.025931 0.000000 0.000000 0.000000 0.018759 0.00000 0.00000 0.00000 Miyatake, H. Hasegawa, T. Yamano, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 90.00 110.18 90.00 40.191 38.564 56.794 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking I -1 126.904 IODIDE ION non-polymer C9 H10 I N O3 307.085 n 3-IODO-TYROSINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H9 I2 N O3 432.982 n 3,5-DIIODOTYROSINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking DK ACTA CRYSTALLOGR.,SECT.D ABCRE6 0766 0907-4449 62 280 289 10.1107/S0907444905041909 16510975 New methods to prepare iodinated derivatives by vaporizing iodine labelling (VIL) and hydrogen peroxide VIL (HYPER-VIL) 2006 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 Osmic Cu CMF IMAGE PLATE 2005-08-03 RIGAKU RAXIS IV Osmic Cu CMF SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU FR-E 21734.510 Endo-1,4-beta-xylanase 2 3.2.1.8 1 nat polymer 126.904 IODIDE ION 1 syn non-polymer 18.015 water 52 nat water Xylanase 2, 1,4- beta-D-xylan xylanohydrolase 2 no yes TIQPGTG(IYR)NNGYFYSYWNDGHGGVTYTNGPGGQFSVNWSNSGNFVGGKGWQPGTKNKVINFSGSYNPNGNS(IYR) LSVYGWSRNPLIEYYIVENFGT(IYR)NPSTGATKLGEVTSDGSVYDIYRTQRVNQPSIIGTATF(TYI)QYWSVRRNHR SSGSVNTANHFNAWAQQGLTLGTMD(TYI)QIVAVEG(IYR)FSSGSASITVS TIQPGTGYNNGYFYSYWNDGHGGVTYTNGPGGQFSVNWSNSGNFVGGKGWQPGTKNKVINFSGSYNPNGNSYLSVYGWSR NPLIEYYIVENFGTYNPSTGATKLGEVTSDGSVYDIYRTQRVNQPSIIGTATFYQYWSVRRNHRSSGSVNTANHFNAWAQ QGLTLGTMDYQIVAVEGYFSSGSASITVS A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Hypocrea sample 51453 Hypocrea jecorina 1 1.90 35.27 VAPOR DIFFUSION, HANGING DROP 4.3 1.5M ammonium sulfate, 0.1M Na citrate , pH 4.3, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 repository Initial release Version format compliance Version format compliance 1 0 2006-07-11 1 1 2008-04-30 1 2 2011-07-13 VIL-thaumatin HYPER-VIL-thaumatin HYPER-VIL-trypsine HYPER-VIL-lysozyme VIL-xylanase PDBJ Y PDBJ 2005-12-09 REL REL IOD IODIDE ION HOH water IOD 200 2 IOD IOD 200 A HOH 1 3 HOH HOH 201 A HOH 2 3 HOH HOH 202 A HOH 3 3 HOH HOH 203 A HOH 4 3 HOH HOH 204 A HOH 5 3 HOH HOH 205 A HOH 6 3 HOH HOH 206 A HOH 7 3 HOH HOH 207 A HOH 8 3 HOH HOH 208 A HOH 9 3 HOH HOH 209 A HOH 10 3 HOH HOH 210 A HOH 11 3 HOH HOH 211 A HOH 12 3 HOH HOH 212 A HOH 13 3 HOH HOH 213 A HOH 14 3 HOH HOH 214 A HOH 15 3 HOH HOH 215 A HOH 16 3 HOH HOH 216 A HOH 17 3 HOH HOH 217 A HOH 18 3 HOH HOH 218 A HOH 19 3 HOH HOH 219 A HOH 20 3 HOH HOH 220 A HOH 21 3 HOH HOH 221 A HOH 22 3 HOH HOH 222 A HOH 23 3 HOH HOH 223 A HOH 24 3 HOH HOH 224 A HOH 25 3 HOH HOH 225 A HOH 26 3 HOH HOH 226 A HOH 27 3 HOH HOH 227 A HOH 28 3 HOH HOH 228 A HOH 29 3 HOH HOH 229 A HOH 30 3 HOH HOH 230 A HOH 31 3 HOH HOH 231 A HOH 32 3 HOH HOH 232 A HOH 33 3 HOH HOH 233 A HOH 34 3 HOH HOH 234 A HOH 35 3 HOH HOH 235 A HOH 36 3 HOH HOH 236 A HOH 37 3 HOH HOH 237 A HOH 38 3 HOH HOH 238 A HOH 39 3 HOH HOH 239 A HOH 40 3 HOH HOH 240 A HOH 41 3 HOH HOH 241 A HOH 42 3 HOH HOH 242 A HOH 43 3 HOH HOH 243 A HOH 44 3 HOH HOH 244 A HOH 45 3 HOH HOH 245 A HOH 46 3 HOH HOH 246 A HOH 47 3 HOH HOH 247 A HOH 48 3 HOH HOH 248 A HOH 49 3 HOH HOH 249 A HOH 50 3 HOH HOH 250 A HOH 51 3 HOH HOH 251 A HOH 52 3 HOH HOH 252 A THR 2 n 1 THR 2 A ILE 3 n 2 ILE 3 A GLN 4 n 3 GLN 4 A PRO 5 n 4 PRO 5 A GLY 6 n 5 GLY 6 A THR 7 n 6 THR 7 A GLY 8 n 7 GLY 8 A IYR 9 n 8 IYR 9 A ASN 10 n 9 ASN 10 A ASN 11 n 10 ASN 11 A GLY 12 n 11 GLY 12 A TYR 13 n 12 TYR 13 A PHE 14 n 13 PHE 14 A TYR 15 n 14 TYR 15 A SER 16 n 15 SER 16 A TYR 17 n 16 TYR 17 A TRP 18 n 17 TRP 18 A ASN 19 n 18 ASN 19 A ASP 20 n 19 ASP 20 A GLY 21 n 20 GLY 21 A HIS 22 n 21 HIS 22 A GLY 23 n 22 GLY 23 A GLY 24 n 23 GLY 24 A VAL 25 n 24 VAL 25 A THR 26 n 25 THR 26 A TYR 27 n 26 TYR 27 A THR 28 n 27 THR 28 A ASN 29 n 28 ASN 29 A GLY 30 n 29 GLY 30 A PRO 31 n 30 PRO 31 A GLY 32 n 31 GLY 32 A GLY 33 n 32 GLY 33 A GLN 34 n 33 GLN 34 A PHE 35 n 34 PHE 35 A SER 36 n 35 SER 36 A VAL 37 n 36 VAL 37 A ASN 38 n 37 ASN 38 A TRP 39 n 38 TRP 39 A SER 40 n 39 SER 40 A ASN 41 n 40 ASN 41 A SER 42 n 41 SER 42 A GLY 43 n 42 GLY 43 A ASN 44 n 43 ASN 44 A PHE 45 n 44 PHE 45 A VAL 46 n 45 VAL 46 A GLY 47 n 46 GLY 47 A GLY 48 n 47 GLY 48 A LYS 49 n 48 LYS 49 A GLY 50 n 49 GLY 50 A TRP 51 n 50 TRP 51 A GLN 52 n 51 GLN 52 A PRO 53 n 52 PRO 53 A GLY 54 n 53 GLY 54 A THR 55 n 54 THR 55 A LYS 56 n 55 LYS 56 A ASN 57 n 56 ASN 57 A LYS 58 n 57 LYS 58 A VAL 59 n 58 VAL 59 A ILE 60 n 59 ILE 60 A ASN 61 n 60 ASN 61 A PHE 62 n 61 PHE 62 A SER 63 n 62 SER 63 A GLY 64 n 63 GLY 64 A SER 65 n 64 SER 65 A TYR 66 n 65 TYR 66 A ASN 67 n 66 ASN 67 A PRO 68 n 67 PRO 68 A ASN 69 n 68 ASN 69 A GLY 70 n 69 GLY 70 A ASN 71 n 70 ASN 71 A SER 72 n 71 SER 72 A IYR 73 n 72 IYR 73 A LEU 74 n 73 LEU 74 A SER 75 n 74 SER 75 A VAL 76 n 75 VAL 76 A TYR 77 n 76 TYR 77 A GLY 78 n 77 GLY 78 A TRP 79 n 78 TRP 79 A SER 80 n 79 SER 80 A ARG 81 n 80 ARG 81 A ASN 82 n 81 ASN 82 A PRO 83 n 82 PRO 83 A LEU 84 n 83 LEU 84 A ILE 85 n 84 ILE 85 A GLU 86 n 85 GLU 86 A TYR 87 n 86 TYR 87 A TYR 88 n 87 TYR 88 A ILE 89 n 88 ILE 89 A VAL 90 n 89 VAL 90 A GLU 91 n 90 GLU 91 A ASN 92 n 91 ASN 92 A PHE 93 n 92 PHE 93 A GLY 94 n 93 GLY 94 A THR 95 n 94 THR 95 A IYR 96 n 95 IYR 96 A ASN 97 n 96 ASN 97 A PRO 98 n 97 PRO 98 A SER 99 n 98 SER 99 A THR 100 n 99 THR 100 A GLY 101 n 100 GLY 101 A ALA 102 n 101 ALA 102 A THR 103 n 102 THR 103 A LYS 104 n 103 LYS 104 A LEU 105 n 104 LEU 105 A GLY 106 n 105 GLY 106 A GLU 107 n 106 GLU 107 A VAL 108 n 107 VAL 108 A THR 109 n 108 THR 109 A SER 110 n 109 SER 110 A ASP 111 n 110 ASP 111 A GLY 112 n 111 GLY 112 A SER 113 n 112 SER 113 A VAL 114 n 113 VAL 114 A TYR 115 n 114 TYR 115 A ASP 116 n 115 ASP 116 A ILE 117 n 116 ILE 117 A TYR 118 n 117 TYR 118 A ARG 119 n 118 ARG 119 A THR 120 n 119 THR 120 A GLN 121 n 120 GLN 121 A ARG 122 n 121 ARG 122 A VAL 123 n 122 VAL 123 A ASN 124 n 123 ASN 124 A GLN 125 n 124 GLN 125 A PRO 126 n 125 PRO 126 A SER 127 n 126 SER 127 A ILE 128 n 127 ILE 128 A ILE 129 n 128 ILE 129 A GLY 130 n 129 GLY 130 A THR 131 n 130 THR 131 A ALA 132 n 131 ALA 132 A THR 133 n 132 THR 133 A PHE 134 n 133 PHE 134 A TYI 135 n 134 TYI 135 A GLN 136 n 135 GLN 136 A TYR 137 n 136 TYR 137 A TRP 138 n 137 TRP 138 A SER 139 n 138 SER 139 A VAL 140 n 139 VAL 140 A ARG 141 n 140 ARG 141 A ARG 142 n 141 ARG 142 A ASN 143 n 142 ASN 143 A HIS 144 n 143 HIS 144 A ARG 145 n 144 ARG 145 A SER 146 n 145 SER 146 A SER 147 n 146 SER 147 A GLY 148 n 147 GLY 148 A SER 149 n 148 SER 149 A VAL 150 n 149 VAL 150 A ASN 151 n 150 ASN 151 A THR 152 n 151 THR 152 A ALA 153 n 152 ALA 153 A ASN 154 n 153 ASN 154 A HIS 155 n 154 HIS 155 A PHE 156 n 155 PHE 156 A ASN 157 n 156 ASN 157 A ALA 158 n 157 ALA 158 A TRP 159 n 158 TRP 159 A ALA 160 n 159 ALA 160 A GLN 161 n 160 GLN 161 A GLN 162 n 161 GLN 162 A GLY 163 n 162 GLY 163 A LEU 164 n 163 LEU 164 A THR 165 n 164 THR 165 A LEU 166 n 165 LEU 166 A GLY 167 n 166 GLY 167 A THR 168 n 167 THR 168 A MET 169 n 168 MET 169 A ASP 170 n 169 ASP 170 A TYI 171 n 170 TYI 171 A GLN 172 n 171 GLN 172 A ILE 173 n 172 ILE 173 A VAL 174 n 173 VAL 174 A ALA 175 n 174 ALA 175 A VAL 176 n 175 VAL 176 A GLU 177 n 176 GLU 177 A GLY 178 n 177 GLY 178 A IYR 179 n 178 IYR 179 A PHE 180 n 179 PHE 180 A SER 181 n 180 SER 181 A SER 182 n 181 SER 182 A GLY 183 n 182 GLY 183 A SER 184 n 183 SER 184 A ALA 185 n 184 ALA 185 A SER 186 n 185 SER 186 A ILE 187 n 186 ILE 187 A THR 188 n 187 THR 188 A VAL 189 n 188 VAL 189 A SER 190 n 189 SER 190 A author_defined_assembly 1 monomeric A IYR 9 3-IODO-TYROSINE A IYR 8 TYR A IYR 73 3-IODO-TYROSINE A IYR 72 TYR A IYR 96 3-IODO-TYROSINE A IYR 95 TYR A TYI 135 3,5-DIIODOTYROSINE A TYI 134 TYR A TYI 171 3,5-DIIODOTYROSINE A TYI 170 TYR A IYR 179 3-IODO-TYROSINE A IYR 178 TYR 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ASN 10 A N ASN 9 A O TYR 13 A O TYR 12 A N PHE 14 A N PHE 13 A O GLY 50 A O GLY 49 A N TRP 51 A N TRP 50 A O GLN 172 A O GLN 171 A O ILE 173 A O ILE 172 A N TYR 77 A N TYR 76 A N LEU 74 A N LEU 73 A O ASN 92 A O ASN 91 A N VAL 90 A N VAL 89 A O ARG 141 A O ARG 140 A O PHE 134 A O PHE 133 A N ARG 122 A N ARG 121 A O TYR 115 A O TYR 114 A N VAL 108 A N VAL 107 A N THR 28 A N THR 27 A O SER 36 A O SER 35 A N PHE 35 A N PHE 34 A O ILE 187 A O ILE 186 A O SER 182 A O SER 181 A N ASN 69 A N ASN 68 A N ILE 60 A N ILE 59 A O VAL 150 A O VAL 149 1 A ASN 57 -140.53 15.79 1 A ASN 82 45.70 71.63 1 A THR 95 80.04 -57.31 1 A ASP 170 -101.63 -144.31 IYR2.param protein_IYR2.top water_rep.param ion.param 23.0 3.96 0.00 -5.07 -2.93 0.00 -1.04 0.253 0.011 0.209 0.209 2.00 20.10 492 11213 10211 4.8 91.0 RANDOM 761451.20 0.000000 1 RESTRAINED THROUGHOUT 0.0 MIRAS Engh & Huber FLAT MODEL 46.2859 0.455302 0.29 0.23 5.00 0.22 0.12 2.00 20.10 52 1532 1 0 1479 0.008 1.4 26.0 0.76 0.297 0.036 0.236 2.13 69 1429 6 4.6 80.6 17.6 2.00 53.30 2D98 11213 10211 0.0 0.0 1 91.06 2.00 2.13 80.6 refinement CNS 1.1 data reduction HKL-2000 data scaling SCALEPACK phasing SHARP Endo-1,4-beta-xylanase 2 (E.C.3.2.1.8) Structure of VIL (extra KI/I2 added)-xylanase 1 N N 2 N N 3 N N A THR 152 A THR 151 HELX_P A GLN 162 A GLN 161 1 1 11 covale 1.327 A GLY 8 A C GLY 7 1_555 A IYR 9 A N IYR 8 1_555 covale 1.324 A IYR 9 A C IYR 8 1_555 A ASN 10 A N ASN 9 1_555 covale 1.330 A SER 72 A C SER 71 1_555 A IYR 73 A N IYR 72 1_555 covale 1.326 A IYR 73 A C IYR 72 1_555 A LEU 74 A N LEU 73 1_555 covale 1.329 A THR 95 A C THR 94 1_555 A IYR 96 A N IYR 95 1_555 covale 1.327 A IYR 96 A C IYR 95 1_555 A ASN 97 A N ASN 96 1_555 covale 1.330 A PHE 134 A C PHE 133 1_555 A TYI 135 A N TYI 134 1_555 covale 1.332 A TYI 135 A C TYI 134 1_555 A GLN 136 A N GLN 135 1_555 covale 1.328 A ASP 170 A C ASP 169 1_555 A TYI 171 A N TYI 170 1_555 covale 1.327 A TYI 171 A C TYI 170 1_555 A GLN 172 A N GLN 171 1_555 covale 1.331 A GLY 178 A C GLY 177 1_555 A IYR 179 A N IYR 178 1_555 covale 1.329 A IYR 179 A C IYR 178 1_555 A PHE 180 A N PHE 179 1_555 HYDROLASE iodo-tyrosine, VAPORIZING IODINE LABELING(VIL), HYDROLASE A GLN 52 A GLN 51 1 A PRO 53 A PRO 52 -0.21 A ASN 82 A ASN 81 1 A PRO 83 A PRO 82 0.28 XYN2_TRIRE UNP 1 34 P36217 TIQPGTGYNNGYFYSYWNDGHGGVTYTNGPGGQFSVNWSNSGNFVGGKGWQPGTKNKVINFSGSYNPNGNSYLSVYGWSR NPLIEYYIVENFGTYNPSTGATKLGEVTSDGSVYDIYRTQRVNQPSIIGTATFYQYWSVRRNHRSSGSVNTANHFNAWAQ QGLTLGTMDYQIVAVEGYFSSGSASITVS 34 222 2D98 2 190 P36217 A 1 1 189 1 TYR MODIFIED RESIDUE IYR 9 2D98 A P36217 UNP 41 8 1 TYR MODIFIED RESIDUE IYR 73 2D98 A P36217 UNP 105 72 1 TYR MODIFIED RESIDUE IYR 96 2D98 A P36217 UNP 128 95 1 TYR MODIFIED RESIDUE TYI 135 2D98 A P36217 UNP 167 134 1 TYR MODIFIED RESIDUE TYI 171 2D98 A P36217 UNP 203 170 1 TYR MODIFIED RESIDUE IYR 179 2D98 A P36217 UNP 211 178 9 5 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A GLY 6 A GLY 5 A ASN 10 A ASN 9 A TYR 13 A TYR 12 A ASN 19 A ASN 18 A ASN 44 A ASN 43 A TRP 51 A TRP 50 A THR 168 A THR 167 A IYR 179 A IYR 178 A SER 72 A SER 71 A ARG 81 A ARG 80 A ILE 85 A ILE 84 A GLY 94 A GLY 93 A ALA 132 A ALA 131 A ARG 141 A ARG 140 A SER 113 A SER 112 A GLN 125 A GLN 124 A THR 103 A THR 102 A SER 110 A SER 109 A VAL 25 A VAL 24 A ASN 29 A ASN 28 A GLN 34 A GLN 33 A TRP 39 A TRP 38 A SER 182 A SER 181 A SER 190 A SER 189 A VAL 59 A VAL 58 A ASN 69 A ASN 68 A GLY 148 A GLY 147 A ASN 151 A ASN 150 BINDING SITE FOR RESIDUE IOD A 200 Software 3 A GLY 24 A GLY 23 3 1_555 A THR 26 A THR 25 3 1_555 A ASN 38 A ASN 37 3 1_555 4 P 1 21 1