1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Inoue, K.
Nagashima, T.
Izumi, K.
Hayashi, F.
Yokoyama, S.
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
Solution structure of the 7th PDZ domain of InaD-like protein
10.2210/pdb2daz/pdb
pdb_00002daz
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
13267.878
InaD-like protein
PDZ domain
1
man
polymer
Inadl protein, hINADL, Pals1-associated tight junction protein, Protein associated to tight junctions
no
no
GSSGSSGDAFTDQKIRQRYADLPGELHIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEIN
NQILYGRSHQNASAIIKTAPSKVKLVFIRNEDAVNQMASGPSSG
GSSGSSGDAFTDQKIRQRYADLPGELHIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEIN
NQILYGRSHQNASAIIKTAPSKVKLVFIRNEDAVNQMASGPSSG
A
hso003006830.2
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
sample
Cell-free protein synthesis
INADL, PATJ
9606
Homo sapiens
Cell free synthesis
PLASMID
P050302-33
RIKEN Structural Genomics/Proteomics Initiative
RSGI
NPPSFA, National Project on Protein Structural and Functional Analyses
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
struct_sheet
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2006-06-14
1
1
2008-04-30
1
2
2011-07-13
1
3
2022-03-09
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_struct_ref_seq_dif.details
_struct_sheet.number_strands
HELIX
DETERMINATION METHOD: AUTHOR DETERMINED
SHEET
DETERMINATION METHOD: AUTHOR DETERMINED
Y
PDBJ
Y
PDBJ
2005-12-14
REL
target function,structures with the lowest energy,structures with the least restraint violations
100
20
3D_15N-separated_NOESY
3D_13C-separated_NOESY
120mM
7.0
ambient
298
K
torsion angle dynamics
1
lowest energy
1.28mM U-15N,13C-labeled protein; 20mM d-Tris-HCl; 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 10% D2O
90% H2O/10% D2O
Varian
collection
VNMR
6.1C
Delaglio, F.
processing
NMRPipe
20031121
Johnson, B.A.
data analysis
NMRView
5.0.4
Kobayashi, N.
data analysis
KUJIRA
0.93191
Guntert, P.
structure solution
CYANA
2.0.17
Guntert, P.
refinement
CYANA
2.0.17
800
Varian
INOVA
GLY
1
n
1
GLY
1
A
SER
2
n
2
SER
2
A
SER
3
n
3
SER
3
A
GLY
4
n
4
GLY
4
A
SER
5
n
5
SER
5
A
SER
6
n
6
SER
6
A
GLY
7
n
7
GLY
7
A
ASP
8
n
8
ASP
8
A
ALA
9
n
9
ALA
9
A
PHE
10
n
10
PHE
10
A
THR
11
n
11
THR
11
A
ASP
12
n
12
ASP
12
A
GLN
13
n
13
GLN
13
A
LYS
14
n
14
LYS
14
A
ILE
15
n
15
ILE
15
A
ARG
16
n
16
ARG
16
A
GLN
17
n
17
GLN
17
A
ARG
18
n
18
ARG
18
A
TYR
19
n
19
TYR
19
A
ALA
20
n
20
ALA
20
A
ASP
21
n
21
ASP
21
A
LEU
22
n
22
LEU
22
A
PRO
23
n
23
PRO
23
A
GLY
24
n
24
GLY
24
A
GLU
25
n
25
GLU
25
A
LEU
26
n
26
LEU
26
A
HIS
27
n
27
HIS
27
A
ILE
28
n
28
ILE
28
A
ILE
29
n
29
ILE
29
A
GLU
30
n
30
GLU
30
A
LEU
31
n
31
LEU
31
A
GLU
32
n
32
GLU
32
A
LYS
33
n
33
LYS
33
A
ASP
34
n
34
ASP
34
A
LYS
35
n
35
LYS
35
A
ASN
36
n
36
ASN
36
A
GLY
37
n
37
GLY
37
A
LEU
38
n
38
LEU
38
A
GLY
39
n
39
GLY
39
A
LEU
40
n
40
LEU
40
A
SER
41
n
41
SER
41
A
LEU
42
n
42
LEU
42
A
ALA
43
n
43
ALA
43
A
GLY
44
n
44
GLY
44
A
ASN
45
n
45
ASN
45
A
LYS
46
n
46
LYS
46
A
ASP
47
n
47
ASP
47
A
ARG
48
n
48
ARG
48
A
SER
49
n
49
SER
49
A
ARG
50
n
50
ARG
50
A
MET
51
n
51
MET
51
A
SER
52
n
52
SER
52
A
ILE
53
n
53
ILE
53
A
PHE
54
n
54
PHE
54
A
VAL
55
n
55
VAL
55
A
VAL
56
n
56
VAL
56
A
GLY
57
n
57
GLY
57
A
ILE
58
n
58
ILE
58
A
ASN
59
n
59
ASN
59
A
PRO
60
n
60
PRO
60
A
GLU
61
n
61
GLU
61
A
GLY
62
n
62
GLY
62
A
PRO
63
n
63
PRO
63
A
ALA
64
n
64
ALA
64
A
ALA
65
n
65
ALA
65
A
ALA
66
n
66
ALA
66
A
ASP
67
n
67
ASP
67
A
GLY
68
n
68
GLY
68
A
ARG
69
n
69
ARG
69
A
MET
70
n
70
MET
70
A
ARG
71
n
71
ARG
71
A
ILE
72
n
72
ILE
72
A
GLY
73
n
73
GLY
73
A
ASP
74
n
74
ASP
74
A
GLU
75
n
75
GLU
75
A
LEU
76
n
76
LEU
76
A
LEU
77
n
77
LEU
77
A
GLU
78
n
78
GLU
78
A
ILE
79
n
79
ILE
79
A
ASN
80
n
80
ASN
80
A
ASN
81
n
81
ASN
81
A
GLN
82
n
82
GLN
82
A
ILE
83
n
83
ILE
83
A
LEU
84
n
84
LEU
84
A
TYR
85
n
85
TYR
85
A
GLY
86
n
86
GLY
86
A
ARG
87
n
87
ARG
87
A
SER
88
n
88
SER
88
A
HIS
89
n
89
HIS
89
A
GLN
90
n
90
GLN
90
A
ASN
91
n
91
ASN
91
A
ALA
92
n
92
ALA
92
A
SER
93
n
93
SER
93
A
ALA
94
n
94
ALA
94
A
ILE
95
n
95
ILE
95
A
ILE
96
n
96
ILE
96
A
LYS
97
n
97
LYS
97
A
THR
98
n
98
THR
98
A
ALA
99
n
99
ALA
99
A
PRO
100
n
100
PRO
100
A
SER
101
n
101
SER
101
A
LYS
102
n
102
LYS
102
A
VAL
103
n
103
VAL
103
A
LYS
104
n
104
LYS
104
A
LEU
105
n
105
LEU
105
A
VAL
106
n
106
VAL
106
A
PHE
107
n
107
PHE
107
A
ILE
108
n
108
ILE
108
A
ARG
109
n
109
ARG
109
A
ASN
110
n
110
ASN
110
A
GLU
111
n
111
GLU
111
A
ASP
112
n
112
ASP
112
A
ALA
113
n
113
ALA
113
A
VAL
114
n
114
VAL
114
A
ASN
115
n
115
ASN
115
A
GLN
116
n
116
GLN
116
A
MET
117
n
117
MET
117
A
ALA
118
n
118
ALA
118
A
SER
119
n
119
SER
119
A
GLY
120
n
120
GLY
120
A
PRO
121
n
121
PRO
121
A
SER
122
n
122
SER
122
A
SER
123
n
123
SER
123
A
GLY
124
n
124
GLY
124
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
HIS
27
A
N
HIS
27
A
O
PHE
107
A
O
PHE
107
A
O
VAL
106
A
O
VAL
106
A
N
GLU
78
A
N
GLU
78
A
N
SER
41
A
N
SER
41
A
O
GLY
57
A
O
GLY
57
1
A
ASP
8
-89.16
40.20
1
A
LYS
35
-34.24
-34.18
1
A
LEU
38
-69.27
86.14
1
A
SER
52
-175.02
129.92
1
A
ASN
59
-37.71
120.64
1
A
TYR
85
-42.86
109.09
1
A
MET
117
-42.68
165.93
2
A
SER
2
-39.65
149.72
2
A
ASP
8
-91.95
39.53
2
A
LYS
35
-34.39
-37.29
2
A
SER
49
-35.27
-39.75
2
A
ASN
59
-34.92
118.83
2
A
ARG
69
-121.76
-52.01
2
A
TYR
85
-35.79
98.85
2
A
SER
119
74.64
38.76
2
A
SER
123
-172.54
138.58
3
A
SER
3
-37.30
154.70
3
A
SER
6
-69.26
78.10
3
A
ASN
45
-34.87
149.63
3
A
ASN
80
35.10
50.03
3
A
TYR
85
-36.12
100.04
3
A
MET
117
-46.64
152.46
4
A
ASP
8
-87.50
30.69
4
A
LYS
33
-35.05
122.63
4
A
LYS
35
-36.49
-32.18
4
A
LEU
38
-69.35
85.08
4
A
SER
49
-37.30
-38.54
4
A
TYR
85
-40.14
94.14
4
A
PRO
121
-69.76
2.41
4
A
SER
122
-99.83
37.64
5
A
ASP
8
-94.91
36.56
5
A
ASN
45
-34.45
137.45
5
A
ASN
81
74.81
44.88
5
A
TYR
85
-41.95
94.84
5
A
PRO
121
-69.76
2.80
6
A
LYS
35
-37.53
-28.71
6
A
SER
49
-36.44
-37.95
6
A
TYR
85
-40.81
99.04
6
A
ALA
118
-39.73
-38.77
6
A
PRO
121
-69.78
91.79
7
A
LYS
33
-39.16
132.17
7
A
LYS
35
-34.25
-39.68
7
A
SER
49
-35.47
-33.83
7
A
ASN
59
-39.19
119.00
7
A
ASN
80
37.28
47.08
7
A
SER
122
-48.96
157.58
8
A
LYS
35
-36.94
-38.27
8
A
TYR
85
-42.92
92.94
8
A
PRO
121
-69.78
2.70
9
A
SER
6
-46.21
152.88
9
A
ASP
8
-84.34
37.48
9
A
LYS
35
-37.71
-28.41
9
A
LEU
38
-69.35
91.55
9
A
ASN
45
-37.03
150.02
9
A
ASN
80
34.30
49.76
9
A
TYR
85
-50.89
101.74
9
A
PRO
121
-69.73
0.24
10
A
LYS
33
-37.14
130.01
10
A
LYS
46
-34.66
-38.93
10
A
ASN
59
-39.27
122.72
10
A
PRO
121
-69.78
87.26
10
A
SER
122
-35.52
117.22
11
A
SER
3
-40.73
155.00
11
A
ASP
8
-92.75
43.67
11
A
LYS
35
-34.63
-34.19
11
A
LEU
38
-59.71
109.93
11
A
LYS
46
-37.43
-34.32
11
A
MET
51
-64.93
97.46
11
A
TYR
85
-44.89
94.81
11
A
ALA
118
-34.04
-36.62
12
A
SER
2
-69.56
85.09
12
A
ASP
8
-83.84
38.53
12
A
LYS
33
-39.15
123.10
12
A
LYS
35
-34.19
-39.22
12
A
LEU
38
-61.05
94.70
12
A
SER
49
-37.55
-37.64
12
A
PRO
60
-69.80
0.08
12
A
ALA
64
-39.29
-36.69
12
A
TYR
85
-47.69
96.19
12
A
ALA
118
-67.32
97.21
12
A
SER
122
-62.89
-70.30
12
A
SER
123
-94.63
-61.87
13
A
ASP
8
-84.43
39.16
13
A
LYS
33
-39.92
131.55
13
A
LYS
35
-35.56
-32.08
13
A
SER
49
-36.65
-33.43
13
A
ARG
69
-122.27
-50.89
13
A
ASN
81
71.88
53.44
13
A
TYR
85
-37.28
109.42
14
A
ASP
8
-87.22
43.62
14
A
ASP
12
-35.98
-38.91
14
A
LYS
35
-36.64
-32.76
14
A
ALA
64
-39.00
-39.03
14
A
ASN
81
71.93
41.87
14
A
TYR
85
-46.34
98.96
14
A
ALA
118
-33.95
-37.42
14
A
PRO
121
-69.72
1.99
14
A
SER
123
35.25
37.95
15
A
LEU
38
-66.13
74.93
15
A
ASN
45
-35.68
141.58
15
A
ASN
59
-34.84
120.80
15
A
TYR
85
-39.97
107.79
16
A
ASP
12
-37.18
-39.34
16
A
LYS
33
-37.47
117.11
16
A
LEU
38
-58.98
109.76
16
A
SER
52
-174.96
142.61
16
A
ASN
59
-39.29
118.32
16
A
ASN
80
35.96
48.45
16
A
TYR
85
-44.45
106.75
16
A
SER
119
71.98
38.85
17
A
ASP
8
-84.56
32.54
17
A
LEU
38
-64.84
89.29
17
A
ASN
45
-35.70
137.71
17
A
MET
51
-65.94
99.39
17
A
LEU
76
-52.74
109.55
17
A
TYR
85
-40.72
95.06
17
A
PRO
100
-69.75
-171.52
18
A
SER
3
-84.75
45.53
18
A
SER
6
-120.19
-59.65
18
A
LYS
35
-34.58
-36.83
18
A
SER
52
-174.02
144.70
18
A
ASN
59
-39.05
125.40
18
A
ASP
74
-48.55
155.09
18
A
ASN
80
37.99
40.55
18
A
TYR
85
-45.63
104.99
19
A
ASP
8
-95.75
38.21
19
A
LYS
35
-34.35
-34.61
19
A
ARG
69
-121.49
-50.23
19
A
ASN
81
73.54
39.76
19
A
TYR
85
-42.93
105.16
19
A
SER
119
74.44
33.56
19
A
PRO
121
-69.76
2.71
20
A
LYS
33
-39.46
120.12
20
A
LYS
35
-35.59
-32.03
20
A
SER
49
-36.93
-37.81
20
A
ASN
81
73.55
48.06
20
A
TYR
85
-46.73
97.31
20
A
PRO
100
-69.72
-168.81
20
A
GLN
116
-94.22
-62.29
20
A
PRO
121
-69.73
2.35
Solution structure of the 7th PDZ domain of InaD-like protein
1
N
N
A
THR
11
A
THR
11
HELX_P
A
TYR
19
A
TYR
19
1
1
9
A
GLY
62
A
GLY
62
HELX_P
A
GLY
68
A
GLY
68
1
2
7
A
SER
88
A
SER
88
HELX_P
A
ALA
99
A
ALA
99
1
3
12
A
ASP
112
A
ASP
112
HELX_P
A
MET
117
A
MET
117
1
4
6
PROTEIN BINDING
PDZ domain, InaD-like protein, Inadl protein, hINADL, Pals1-associated tight junction protein, Protein associated to tight junctions, INADL, PATJ, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, PROTEIN BINDING
INADL_HUMAN
UNP
1
1219
Q8NI35
1219
1329
2DAZ
8
118
Q8NI35
A
1
8
118
1
cloning artifact
GLY
1
2DAZ
A
Q8NI35
UNP
1
1
cloning artifact
SER
2
2DAZ
A
Q8NI35
UNP
2
1
cloning artifact
SER
3
2DAZ
A
Q8NI35
UNP
3
1
cloning artifact
GLY
4
2DAZ
A
Q8NI35
UNP
4
1
cloning artifact
SER
5
2DAZ
A
Q8NI35
UNP
5
1
cloning artifact
SER
6
2DAZ
A
Q8NI35
UNP
6
1
cloning artifact
GLY
7
2DAZ
A
Q8NI35
UNP
7
1
cloning artifact
SER
119
2DAZ
A
Q8NI35
UNP
119
1
cloning artifact
GLY
120
2DAZ
A
Q8NI35
UNP
120
1
cloning artifact
PRO
121
2DAZ
A
Q8NI35
UNP
121
1
cloning artifact
SER
122
2DAZ
A
Q8NI35
UNP
122
1
cloning artifact
SER
123
2DAZ
A
Q8NI35
UNP
123
1
cloning artifact
GLY
124
2DAZ
A
Q8NI35
UNP
124
3
2
anti-parallel
anti-parallel
anti-parallel
A
GLU
25
A
GLU
25
A
GLU
32
A
GLU
32
A
LYS
102
A
LYS
102
A
ARG
109
A
ARG
109
A
GLU
75
A
GLU
75
A
ILE
79
A
ILE
79
A
LEU
40
A
LEU
40
A
ALA
43
A
ALA
43
A
ILE
53
A
ILE
53
A
ILE
58
A
ILE
58
1
P 1