1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Inoue, K. Nagashima, T. Izumi, K. Hayashi, F. Yokoyama, S. RIKEN Structural Genomics/Proteomics Initiative (RSGI) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be Published 0353 Solution structure of the 7th PDZ domain of InaD-like protein 10.2210/pdb2daz/pdb pdb_00002daz 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 13267.878 InaD-like protein PDZ domain 1 man polymer Inadl protein, hINADL, Pals1-associated tight junction protein, Protein associated to tight junctions no no GSSGSSGDAFTDQKIRQRYADLPGELHIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEIN NQILYGRSHQNASAIIKTAPSKVKLVFIRNEDAVNQMASGPSSG GSSGSSGDAFTDQKIRQRYADLPGELHIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEIN NQILYGRSHQNASAIIKTAPSKVKLVFIRNEDAVNQMASGPSSG A hso003006830.2 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo sample Cell-free protein synthesis INADL, PATJ 9606 Homo sapiens Cell free synthesis PLASMID P050302-33 RIKEN Structural Genomics/Proteomics Initiative RSGI NPPSFA, National Project on Protein Structural and Functional Analyses database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif struct_sheet repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2006-06-14 1 1 2008-04-30 1 2 2011-07-13 1 3 2022-03-09 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _struct_ref_seq_dif.details _struct_sheet.number_strands HELIX DETERMINATION METHOD: AUTHOR DETERMINED SHEET DETERMINATION METHOD: AUTHOR DETERMINED Y PDBJ Y PDBJ 2005-12-14 REL target function,structures with the lowest energy,structures with the least restraint violations 100 20 3D_15N-separated_NOESY 3D_13C-separated_NOESY 120mM 7.0 ambient 298 K torsion angle dynamics 1 lowest energy 1.28mM U-15N,13C-labeled protein; 20mM d-Tris-HCl; 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 10% D2O 90% H2O/10% D2O Varian collection VNMR 6.1C Delaglio, F. processing NMRPipe 20031121 Johnson, B.A. data analysis NMRView 5.0.4 Kobayashi, N. data analysis KUJIRA 0.93191 Guntert, P. structure solution CYANA 2.0.17 Guntert, P. refinement CYANA 2.0.17 800 Varian INOVA GLY 1 n 1 GLY 1 A SER 2 n 2 SER 2 A SER 3 n 3 SER 3 A GLY 4 n 4 GLY 4 A SER 5 n 5 SER 5 A SER 6 n 6 SER 6 A GLY 7 n 7 GLY 7 A ASP 8 n 8 ASP 8 A ALA 9 n 9 ALA 9 A PHE 10 n 10 PHE 10 A THR 11 n 11 THR 11 A ASP 12 n 12 ASP 12 A GLN 13 n 13 GLN 13 A LYS 14 n 14 LYS 14 A ILE 15 n 15 ILE 15 A ARG 16 n 16 ARG 16 A GLN 17 n 17 GLN 17 A ARG 18 n 18 ARG 18 A TYR 19 n 19 TYR 19 A ALA 20 n 20 ALA 20 A ASP 21 n 21 ASP 21 A LEU 22 n 22 LEU 22 A PRO 23 n 23 PRO 23 A GLY 24 n 24 GLY 24 A GLU 25 n 25 GLU 25 A LEU 26 n 26 LEU 26 A HIS 27 n 27 HIS 27 A ILE 28 n 28 ILE 28 A ILE 29 n 29 ILE 29 A GLU 30 n 30 GLU 30 A LEU 31 n 31 LEU 31 A GLU 32 n 32 GLU 32 A LYS 33 n 33 LYS 33 A ASP 34 n 34 ASP 34 A LYS 35 n 35 LYS 35 A ASN 36 n 36 ASN 36 A GLY 37 n 37 GLY 37 A LEU 38 n 38 LEU 38 A GLY 39 n 39 GLY 39 A LEU 40 n 40 LEU 40 A SER 41 n 41 SER 41 A LEU 42 n 42 LEU 42 A ALA 43 n 43 ALA 43 A GLY 44 n 44 GLY 44 A ASN 45 n 45 ASN 45 A LYS 46 n 46 LYS 46 A ASP 47 n 47 ASP 47 A ARG 48 n 48 ARG 48 A SER 49 n 49 SER 49 A ARG 50 n 50 ARG 50 A MET 51 n 51 MET 51 A SER 52 n 52 SER 52 A ILE 53 n 53 ILE 53 A PHE 54 n 54 PHE 54 A VAL 55 n 55 VAL 55 A VAL 56 n 56 VAL 56 A GLY 57 n 57 GLY 57 A ILE 58 n 58 ILE 58 A ASN 59 n 59 ASN 59 A PRO 60 n 60 PRO 60 A GLU 61 n 61 GLU 61 A GLY 62 n 62 GLY 62 A PRO 63 n 63 PRO 63 A ALA 64 n 64 ALA 64 A ALA 65 n 65 ALA 65 A ALA 66 n 66 ALA 66 A ASP 67 n 67 ASP 67 A GLY 68 n 68 GLY 68 A ARG 69 n 69 ARG 69 A MET 70 n 70 MET 70 A ARG 71 n 71 ARG 71 A ILE 72 n 72 ILE 72 A GLY 73 n 73 GLY 73 A ASP 74 n 74 ASP 74 A GLU 75 n 75 GLU 75 A LEU 76 n 76 LEU 76 A LEU 77 n 77 LEU 77 A GLU 78 n 78 GLU 78 A ILE 79 n 79 ILE 79 A ASN 80 n 80 ASN 80 A ASN 81 n 81 ASN 81 A GLN 82 n 82 GLN 82 A ILE 83 n 83 ILE 83 A LEU 84 n 84 LEU 84 A TYR 85 n 85 TYR 85 A GLY 86 n 86 GLY 86 A ARG 87 n 87 ARG 87 A SER 88 n 88 SER 88 A HIS 89 n 89 HIS 89 A GLN 90 n 90 GLN 90 A ASN 91 n 91 ASN 91 A ALA 92 n 92 ALA 92 A SER 93 n 93 SER 93 A ALA 94 n 94 ALA 94 A ILE 95 n 95 ILE 95 A ILE 96 n 96 ILE 96 A LYS 97 n 97 LYS 97 A THR 98 n 98 THR 98 A ALA 99 n 99 ALA 99 A PRO 100 n 100 PRO 100 A SER 101 n 101 SER 101 A LYS 102 n 102 LYS 102 A VAL 103 n 103 VAL 103 A LYS 104 n 104 LYS 104 A LEU 105 n 105 LEU 105 A VAL 106 n 106 VAL 106 A PHE 107 n 107 PHE 107 A ILE 108 n 108 ILE 108 A ARG 109 n 109 ARG 109 A ASN 110 n 110 ASN 110 A GLU 111 n 111 GLU 111 A ASP 112 n 112 ASP 112 A ALA 113 n 113 ALA 113 A VAL 114 n 114 VAL 114 A ASN 115 n 115 ASN 115 A GLN 116 n 116 GLN 116 A MET 117 n 117 MET 117 A ALA 118 n 118 ALA 118 A SER 119 n 119 SER 119 A GLY 120 n 120 GLY 120 A PRO 121 n 121 PRO 121 A SER 122 n 122 SER 122 A SER 123 n 123 SER 123 A GLY 124 n 124 GLY 124 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N HIS 27 A N HIS 27 A O PHE 107 A O PHE 107 A O VAL 106 A O VAL 106 A N GLU 78 A N GLU 78 A N SER 41 A N SER 41 A O GLY 57 A O GLY 57 1 A ASP 8 -89.16 40.20 1 A LYS 35 -34.24 -34.18 1 A LEU 38 -69.27 86.14 1 A SER 52 -175.02 129.92 1 A ASN 59 -37.71 120.64 1 A TYR 85 -42.86 109.09 1 A MET 117 -42.68 165.93 2 A SER 2 -39.65 149.72 2 A ASP 8 -91.95 39.53 2 A LYS 35 -34.39 -37.29 2 A SER 49 -35.27 -39.75 2 A ASN 59 -34.92 118.83 2 A ARG 69 -121.76 -52.01 2 A TYR 85 -35.79 98.85 2 A SER 119 74.64 38.76 2 A SER 123 -172.54 138.58 3 A SER 3 -37.30 154.70 3 A SER 6 -69.26 78.10 3 A ASN 45 -34.87 149.63 3 A ASN 80 35.10 50.03 3 A TYR 85 -36.12 100.04 3 A MET 117 -46.64 152.46 4 A ASP 8 -87.50 30.69 4 A LYS 33 -35.05 122.63 4 A LYS 35 -36.49 -32.18 4 A LEU 38 -69.35 85.08 4 A SER 49 -37.30 -38.54 4 A TYR 85 -40.14 94.14 4 A PRO 121 -69.76 2.41 4 A SER 122 -99.83 37.64 5 A ASP 8 -94.91 36.56 5 A ASN 45 -34.45 137.45 5 A ASN 81 74.81 44.88 5 A TYR 85 -41.95 94.84 5 A PRO 121 -69.76 2.80 6 A LYS 35 -37.53 -28.71 6 A SER 49 -36.44 -37.95 6 A TYR 85 -40.81 99.04 6 A ALA 118 -39.73 -38.77 6 A PRO 121 -69.78 91.79 7 A LYS 33 -39.16 132.17 7 A LYS 35 -34.25 -39.68 7 A SER 49 -35.47 -33.83 7 A ASN 59 -39.19 119.00 7 A ASN 80 37.28 47.08 7 A SER 122 -48.96 157.58 8 A LYS 35 -36.94 -38.27 8 A TYR 85 -42.92 92.94 8 A PRO 121 -69.78 2.70 9 A SER 6 -46.21 152.88 9 A ASP 8 -84.34 37.48 9 A LYS 35 -37.71 -28.41 9 A LEU 38 -69.35 91.55 9 A ASN 45 -37.03 150.02 9 A ASN 80 34.30 49.76 9 A TYR 85 -50.89 101.74 9 A PRO 121 -69.73 0.24 10 A LYS 33 -37.14 130.01 10 A LYS 46 -34.66 -38.93 10 A ASN 59 -39.27 122.72 10 A PRO 121 -69.78 87.26 10 A SER 122 -35.52 117.22 11 A SER 3 -40.73 155.00 11 A ASP 8 -92.75 43.67 11 A LYS 35 -34.63 -34.19 11 A LEU 38 -59.71 109.93 11 A LYS 46 -37.43 -34.32 11 A MET 51 -64.93 97.46 11 A TYR 85 -44.89 94.81 11 A ALA 118 -34.04 -36.62 12 A SER 2 -69.56 85.09 12 A ASP 8 -83.84 38.53 12 A LYS 33 -39.15 123.10 12 A LYS 35 -34.19 -39.22 12 A LEU 38 -61.05 94.70 12 A SER 49 -37.55 -37.64 12 A PRO 60 -69.80 0.08 12 A ALA 64 -39.29 -36.69 12 A TYR 85 -47.69 96.19 12 A ALA 118 -67.32 97.21 12 A SER 122 -62.89 -70.30 12 A SER 123 -94.63 -61.87 13 A ASP 8 -84.43 39.16 13 A LYS 33 -39.92 131.55 13 A LYS 35 -35.56 -32.08 13 A SER 49 -36.65 -33.43 13 A ARG 69 -122.27 -50.89 13 A ASN 81 71.88 53.44 13 A TYR 85 -37.28 109.42 14 A ASP 8 -87.22 43.62 14 A ASP 12 -35.98 -38.91 14 A LYS 35 -36.64 -32.76 14 A ALA 64 -39.00 -39.03 14 A ASN 81 71.93 41.87 14 A TYR 85 -46.34 98.96 14 A ALA 118 -33.95 -37.42 14 A PRO 121 -69.72 1.99 14 A SER 123 35.25 37.95 15 A LEU 38 -66.13 74.93 15 A ASN 45 -35.68 141.58 15 A ASN 59 -34.84 120.80 15 A TYR 85 -39.97 107.79 16 A ASP 12 -37.18 -39.34 16 A LYS 33 -37.47 117.11 16 A LEU 38 -58.98 109.76 16 A SER 52 -174.96 142.61 16 A ASN 59 -39.29 118.32 16 A ASN 80 35.96 48.45 16 A TYR 85 -44.45 106.75 16 A SER 119 71.98 38.85 17 A ASP 8 -84.56 32.54 17 A LEU 38 -64.84 89.29 17 A ASN 45 -35.70 137.71 17 A MET 51 -65.94 99.39 17 A LEU 76 -52.74 109.55 17 A TYR 85 -40.72 95.06 17 A PRO 100 -69.75 -171.52 18 A SER 3 -84.75 45.53 18 A SER 6 -120.19 -59.65 18 A LYS 35 -34.58 -36.83 18 A SER 52 -174.02 144.70 18 A ASN 59 -39.05 125.40 18 A ASP 74 -48.55 155.09 18 A ASN 80 37.99 40.55 18 A TYR 85 -45.63 104.99 19 A ASP 8 -95.75 38.21 19 A LYS 35 -34.35 -34.61 19 A ARG 69 -121.49 -50.23 19 A ASN 81 73.54 39.76 19 A TYR 85 -42.93 105.16 19 A SER 119 74.44 33.56 19 A PRO 121 -69.76 2.71 20 A LYS 33 -39.46 120.12 20 A LYS 35 -35.59 -32.03 20 A SER 49 -36.93 -37.81 20 A ASN 81 73.55 48.06 20 A TYR 85 -46.73 97.31 20 A PRO 100 -69.72 -168.81 20 A GLN 116 -94.22 -62.29 20 A PRO 121 -69.73 2.35 Solution structure of the 7th PDZ domain of InaD-like protein 1 N N A THR 11 A THR 11 HELX_P A TYR 19 A TYR 19 1 1 9 A GLY 62 A GLY 62 HELX_P A GLY 68 A GLY 68 1 2 7 A SER 88 A SER 88 HELX_P A ALA 99 A ALA 99 1 3 12 A ASP 112 A ASP 112 HELX_P A MET 117 A MET 117 1 4 6 PROTEIN BINDING PDZ domain, InaD-like protein, Inadl protein, hINADL, Pals1-associated tight junction protein, Protein associated to tight junctions, INADL, PATJ, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, PROTEIN BINDING INADL_HUMAN UNP 1 1219 Q8NI35 1219 1329 2DAZ 8 118 Q8NI35 A 1 8 118 1 cloning artifact GLY 1 2DAZ A Q8NI35 UNP 1 1 cloning artifact SER 2 2DAZ A Q8NI35 UNP 2 1 cloning artifact SER 3 2DAZ A Q8NI35 UNP 3 1 cloning artifact GLY 4 2DAZ A Q8NI35 UNP 4 1 cloning artifact SER 5 2DAZ A Q8NI35 UNP 5 1 cloning artifact SER 6 2DAZ A Q8NI35 UNP 6 1 cloning artifact GLY 7 2DAZ A Q8NI35 UNP 7 1 cloning artifact SER 119 2DAZ A Q8NI35 UNP 119 1 cloning artifact GLY 120 2DAZ A Q8NI35 UNP 120 1 cloning artifact PRO 121 2DAZ A Q8NI35 UNP 121 1 cloning artifact SER 122 2DAZ A Q8NI35 UNP 122 1 cloning artifact SER 123 2DAZ A Q8NI35 UNP 123 1 cloning artifact GLY 124 2DAZ A Q8NI35 UNP 124 3 2 anti-parallel anti-parallel anti-parallel A GLU 25 A GLU 25 A GLU 32 A GLU 32 A LYS 102 A LYS 102 A ARG 109 A ARG 109 A GLU 75 A GLU 75 A ILE 79 A ILE 79 A LEU 40 A LEU 40 A ALA 43 A ALA 43 A ILE 53 A ILE 53 A ILE 58 A ILE 58 1 P 1