1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Inoue, K. Kurosaki, C. Hayashi, F. Yokoyama, S. RIKEN Structural Genomics/Proteomics Initiative (RSGI) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be Published 0353 Solution structure of the first PDZ domain of InaD-like protein 10.2210/pdb2db5/pdb pdb_00002db5 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 13695.127 InaD-like protein PDZ domain 1 man polymer Inadl protein, hINADL, Pals1-associated tight junction protein, Protein associated to tight junctions no no GSSGSSGLGNEDFNSVIQQMAQGRQIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQIL AINHTPLDQNISHQQAIALLQQTTGSLRLIVAREPVHTKSSTSGPSSG GSSGSSGLGNEDFNSVIQQMAQGRQIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQIL AINHTPLDQNISHQQAIALLQQTTGSLRLIVAREPVHTKSSTSGPSSG A hso003006830.1 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo sample Cell-free protein synthesis INADL, PATJ 9606 Homo sapiens Cell free synthesis PLASMID P050302-62 RIKEN Structural Genomics/Proteomics Initiative RSGI NPPSFA, National Project on Protein Structural and Functional Analyses database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2006-06-15 1 1 2008-04-30 1 2 2011-07-13 1 3 2022-03-09 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _struct_ref_seq_dif.details Y PDBJ Y PDBJ 2005-12-15 REL target function,structures with the lowest energy,structures with the least restraint violations 100 20 3D_15N-separated_NOESY 3D_13C-separated_NOESY 120mM 7.0 ambient 298 K torsion angle dynamics 1 lowest energy 1.37mM U-15N,13C-labeled protein; 20mM d-Tris-HCl; 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 10% D2O 90% H2O/10% D2O Varian collection VNMR 6.1C Delaglio, F. processing NMRPipe 20031121 Johnson, B.A. data analysis NMRView 5.0.4 Kobayashi, N. data analysis KUJIRA 0.93191 Guntert, P. structure solution CYANA 2.0.17 Guntert, P. refinement CYANA 2.0.17 800 Varian INOVA GLY 1 n 1 GLY 1 A SER 2 n 2 SER 2 A SER 3 n 3 SER 3 A GLY 4 n 4 GLY 4 A SER 5 n 5 SER 5 A SER 6 n 6 SER 6 A GLY 7 n 7 GLY 7 A LEU 8 n 8 LEU 8 A GLY 9 n 9 GLY 9 A ASN 10 n 10 ASN 10 A GLU 11 n 11 GLU 11 A ASP 12 n 12 ASP 12 A PHE 13 n 13 PHE 13 A ASN 14 n 14 ASN 14 A SER 15 n 15 SER 15 A VAL 16 n 16 VAL 16 A ILE 17 n 17 ILE 17 A GLN 18 n 18 GLN 18 A GLN 19 n 19 GLN 19 A MET 20 n 20 MET 20 A ALA 21 n 21 ALA 21 A GLN 22 n 22 GLN 22 A GLY 23 n 23 GLY 23 A ARG 24 n 24 ARG 24 A GLN 25 n 25 GLN 25 A ILE 26 n 26 ILE 26 A GLU 27 n 27 GLU 27 A TYR 28 n 28 TYR 28 A ILE 29 n 29 ILE 29 A ASP 30 n 30 ASP 30 A ILE 31 n 31 ILE 31 A GLU 32 n 32 GLU 32 A ARG 33 n 33 ARG 33 A PRO 34 n 34 PRO 34 A SER 35 n 35 SER 35 A THR 36 n 36 THR 36 A GLY 37 n 37 GLY 37 A GLY 38 n 38 GLY 38 A LEU 39 n 39 LEU 39 A GLY 40 n 40 GLY 40 A PHE 41 n 41 PHE 41 A SER 42 n 42 SER 42 A VAL 43 n 43 VAL 43 A VAL 44 n 44 VAL 44 A ALA 45 n 45 ALA 45 A LEU 46 n 46 LEU 46 A ARG 47 n 47 ARG 47 A SER 48 n 48 SER 48 A GLN 49 n 49 GLN 49 A ASN 50 n 50 ASN 50 A LEU 51 n 51 LEU 51 A GLY 52 n 52 GLY 52 A LYS 53 n 53 LYS 53 A VAL 54 n 54 VAL 54 A ASP 55 n 55 ASP 55 A ILE 56 n 56 ILE 56 A PHE 57 n 57 PHE 57 A VAL 58 n 58 VAL 58 A LYS 59 n 59 LYS 59 A ASP 60 n 60 ASP 60 A VAL 61 n 61 VAL 61 A GLN 62 n 62 GLN 62 A PRO 63 n 63 PRO 63 A GLY 64 n 64 GLY 64 A SER 65 n 65 SER 65 A VAL 66 n 66 VAL 66 A ALA 67 n 67 ALA 67 A ASP 68 n 68 ASP 68 A ARG 69 n 69 ARG 69 A ASP 70 n 70 ASP 70 A GLN 71 n 71 GLN 71 A ARG 72 n 72 ARG 72 A LEU 73 n 73 LEU 73 A LYS 74 n 74 LYS 74 A GLU 75 n 75 GLU 75 A ASN 76 n 76 ASN 76 A ASP 77 n 77 ASP 77 A GLN 78 n 78 GLN 78 A ILE 79 n 79 ILE 79 A LEU 80 n 80 LEU 80 A ALA 81 n 81 ALA 81 A ILE 82 n 82 ILE 82 A ASN 83 n 83 ASN 83 A HIS 84 n 84 HIS 84 A THR 85 n 85 THR 85 A PRO 86 n 86 PRO 86 A LEU 87 n 87 LEU 87 A ASP 88 n 88 ASP 88 A GLN 89 n 89 GLN 89 A ASN 90 n 90 ASN 90 A ILE 91 n 91 ILE 91 A SER 92 n 92 SER 92 A HIS 93 n 93 HIS 93 A GLN 94 n 94 GLN 94 A GLN 95 n 95 GLN 95 A ALA 96 n 96 ALA 96 A ILE 97 n 97 ILE 97 A ALA 98 n 98 ALA 98 A LEU 99 n 99 LEU 99 A LEU 100 n 100 LEU 100 A GLN 101 n 101 GLN 101 A GLN 102 n 102 GLN 102 A THR 103 n 103 THR 103 A THR 104 n 104 THR 104 A GLY 105 n 105 GLY 105 A SER 106 n 106 SER 106 A LEU 107 n 107 LEU 107 A ARG 108 n 108 ARG 108 A LEU 109 n 109 LEU 109 A ILE 110 n 110 ILE 110 A VAL 111 n 111 VAL 111 A ALA 112 n 112 ALA 112 A ARG 113 n 113 ARG 113 A GLU 114 n 114 GLU 114 A PRO 115 n 115 PRO 115 A VAL 116 n 116 VAL 116 A HIS 117 n 117 HIS 117 A THR 118 n 118 THR 118 A LYS 119 n 119 LYS 119 A SER 120 n 120 SER 120 A SER 121 n 121 SER 121 A THR 122 n 122 THR 122 A SER 123 n 123 SER 123 A GLY 124 n 124 GLY 124 A PRO 125 n 125 PRO 125 A SER 126 n 126 SER 126 A SER 127 n 127 SER 127 A GLY 128 n 128 GLY 128 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 31 A N ILE 31 A O LEU 107 A O LEU 107 A O ILE 110 A O ILE 110 A N LEU 80 A N LEU 80 A N LEU 46 A N LEU 46 A O ASP 55 A O ASP 55 1 A GLN 62 -40.66 103.34 1 A PRO 63 -69.84 84.14 1 A ASP 68 -108.58 -69.25 1 A ASP 70 -105.67 -67.44 1 A LEU 87 -92.86 33.83 1 A ASP 88 -58.31 174.04 1 A GLN 89 -36.82 -33.75 1 A LEU 99 -37.61 -34.22 1 A GLN 102 -97.99 -66.60 1 A THR 103 -36.60 117.68 1 A THR 118 35.81 36.06 2 A PRO 34 -69.75 -175.84 2 A LEU 51 -172.36 -174.97 2 A LYS 53 -171.95 148.53 2 A ASP 68 -122.59 -59.72 2 A ARG 69 -38.14 -35.05 2 A HIS 84 70.35 46.12 2 A LEU 87 -93.52 48.51 2 A GLN 89 -36.51 -30.57 2 A LEU 99 -34.41 -37.12 3 A SER 5 -126.26 -51.07 3 A LEU 8 -125.35 -51.08 3 A ARG 33 -46.29 106.89 3 A PRO 34 -69.81 -170.47 3 A SER 35 -61.35 -176.25 3 A THR 36 -39.45 -26.95 3 A GLN 49 -85.70 36.44 3 A ASN 50 -101.39 -73.16 3 A LEU 51 -173.41 105.14 3 A VAL 66 -37.00 -37.63 3 A ARG 69 -35.97 -31.19 3 A LEU 73 -160.64 117.56 3 A GLN 78 -66.25 99.95 3 A THR 85 -166.77 109.11 3 A LEU 87 -90.77 34.58 3 A ASP 88 -56.04 178.13 3 A HIS 117 -125.82 -53.00 4 A ARG 24 -40.26 155.01 4 A ASN 50 -52.17 -75.13 4 A LEU 51 -175.04 107.49 4 A GLN 71 34.74 35.91 4 A THR 85 -166.10 111.22 4 A LEU 87 -93.59 49.32 4 A GLN 89 -35.67 -37.85 4 A LEU 99 -38.86 -27.63 4 A PRO 115 -69.78 -179.40 4 A THR 122 -171.88 128.64 4 A PRO 125 -69.77 -175.15 4 A SER 127 -34.74 107.24 5 A SER 5 -173.74 114.19 5 A ARG 24 -38.81 138.48 5 A PRO 34 -69.73 -163.33 5 A SER 35 -77.17 -72.60 5 A LEU 39 -34.86 -32.19 5 A ASP 70 -46.32 172.98 5 A GLN 71 -53.45 -75.02 5 A GLN 78 -64.40 94.10 5 A THR 85 -164.77 111.28 5 A LEU 87 -97.23 44.57 5 A SER 126 34.76 41.04 6 A ARG 33 -38.09 110.39 6 A LEU 39 -35.48 -31.17 6 A LEU 51 -174.19 -176.83 6 A ASP 60 75.03 49.11 6 A ALA 67 -38.94 -37.58 6 A ARG 72 -174.74 120.61 6 A THR 85 -160.98 114.36 6 A LEU 87 -98.75 41.25 6 A LEU 99 -39.12 -29.34 6 A GLN 102 -101.77 -62.91 6 A THR 103 -33.32 135.18 6 A VAL 116 30.10 38.57 6 A SER 126 72.75 38.44 7 A LEU 39 -36.46 -39.02 7 A GLN 49 -94.93 38.12 7 A ASN 50 -115.61 -77.60 7 A LEU 51 -177.19 132.31 7 A VAL 66 -35.12 -39.23 7 A GLN 71 -128.80 -73.82 7 A LEU 73 -176.71 136.61 7 A THR 85 -163.33 105.23 7 A LEU 87 -94.95 43.56 7 A ASP 88 -58.82 177.06 7 A GLN 102 -105.42 -68.37 7 A THR 103 -34.85 118.59 7 A SER 106 -33.91 133.60 7 A PRO 115 -69.72 -179.63 7 A PRO 125 -69.79 -176.17 8 A LEU 8 -80.95 -71.90 8 A ASN 10 -40.12 -70.64 8 A PRO 34 -69.66 -167.74 8 A THR 36 -95.92 -69.12 8 A GLN 49 -39.04 -28.41 8 A ASN 50 -61.60 -175.62 8 A LEU 51 -53.26 -178.57 8 A PRO 63 -69.76 1.03 8 A ALA 67 -29.36 -44.78 8 A ASP 68 -106.99 -69.82 8 A ARG 69 -38.43 -32.57 8 A GLN 71 -33.19 -72.13 8 A LEU 73 -174.84 115.27 8 A THR 85 -162.63 105.41 8 A LEU 87 -98.28 49.16 8 A GLN 89 -39.09 -29.69 8 A LEU 99 -39.03 -36.94 8 A GLN 102 -98.49 -62.51 8 A SER 106 -34.47 118.63 8 A PRO 115 -69.80 -179.25 8 A HIS 117 -101.85 -67.98 9 A SER 3 -90.53 42.55 9 A LEU 8 -53.28 175.96 9 A PHE 13 -37.83 -39.56 9 A ASN 50 -39.06 -71.51 9 A LEU 51 -170.15 -174.99 9 A ASP 68 -106.19 -69.15 9 A THR 85 -166.16 112.37 9 A LEU 87 -92.21 45.32 9 A THR 118 -39.51 144.55 9 A PRO 125 -69.75 99.82 10 A SER 2 -46.75 153.06 10 A LEU 8 -42.88 167.22 10 A PRO 34 -69.82 -175.11 10 A THR 36 40.15 25.09 10 A GLN 49 -39.50 -35.53 10 A ASN 50 -54.85 -178.87 10 A LEU 51 -51.62 -179.41 10 A ASP 68 -56.39 -70.85 10 A ASP 70 -46.64 172.93 10 A LEU 73 -169.81 116.27 10 A LEU 87 -92.20 38.96 10 A ASP 88 -58.68 179.67 10 A GLN 102 -113.62 50.38 11 A SER 3 -69.49 87.31 11 A LEU 8 -70.46 -72.47 11 A LEU 39 -37.70 -38.27 11 A ASP 70 -51.14 -176.84 11 A ARG 72 -174.02 126.19 11 A ASP 88 -54.21 -176.79 11 A GLN 102 -102.92 -64.26 11 A THR 103 -34.52 136.81 11 A PRO 115 -69.72 -179.34 12 A ARG 24 -39.60 135.16 12 A PRO 34 -69.75 -173.40 12 A SER 35 -91.50 -69.17 12 A ASN 50 -87.20 -76.69 12 A LEU 51 -177.18 132.89 12 A PRO 63 -69.72 0.60 12 A SER 65 -50.16 -179.43 12 A ASP 68 -73.01 -73.92 12 A GLN 71 -34.75 -70.39 12 A ARG 72 -174.72 132.68 12 A ASN 76 49.25 29.46 12 A LEU 87 -94.82 31.87 12 A ASP 88 -55.51 176.68 12 A GLN 89 -35.07 -34.90 12 A LEU 99 -37.46 -31.76 12 A GLN 102 -99.74 -68.69 12 A THR 103 -37.89 127.70 12 A SER 106 -31.93 139.90 12 A VAL 116 30.22 38.49 12 A THR 122 -92.44 40.56 13 A PRO 34 -69.77 -174.61 13 A LEU 51 -173.21 -176.48 13 A VAL 66 -34.27 -33.64 13 A ASP 68 -107.58 -60.93 13 A ASP 70 -76.79 -70.99 13 A GLN 78 -64.26 99.92 13 A LEU 87 -94.08 30.91 13 A ASP 88 -53.32 176.48 13 A GLN 89 -36.61 -39.99 13 A GLN 102 -117.65 64.24 13 A SER 106 -175.15 142.76 13 A SER 123 -54.17 104.51 14 A LEU 39 -34.06 -36.96 14 A ARG 47 -34.73 128.48 14 A ASN 50 -95.76 -73.77 14 A LEU 51 -172.95 143.02 14 A ALA 67 -37.67 -35.77 14 A ASP 68 -109.11 -74.63 14 A ASP 70 -77.43 -75.63 14 A LEU 87 -93.73 33.31 14 A ASP 88 -58.25 -175.05 14 A LEU 99 -38.26 -34.66 14 A GLN 102 -100.60 -64.39 14 A PRO 115 -69.75 -179.84 14 A HIS 117 -130.65 -67.90 15 A SER 6 -171.42 127.99 15 A ARG 24 -37.90 137.50 15 A THR 36 39.75 25.08 15 A GLN 49 -79.19 44.52 15 A ASN 50 -110.40 -75.06 15 A LEU 51 -174.22 109.49 15 A ASP 68 -117.20 -75.98 15 A ASP 70 -84.28 -73.40 15 A THR 85 -164.96 111.22 15 A LEU 87 -87.46 34.69 15 A ASP 88 -57.63 179.17 15 A LEU 99 -34.67 -33.47 15 A VAL 116 32.11 44.72 15 A HIS 117 -31.68 105.08 16 A PRO 34 -69.79 -164.60 16 A ASN 50 -73.55 -75.49 16 A LEU 51 -175.54 149.88 16 A GLN 62 -38.06 116.47 16 A GLN 71 40.32 28.97 16 A GLN 78 -69.05 99.59 16 A THR 85 -162.37 114.70 16 A LEU 87 -96.58 45.07 16 A GLN 89 -37.60 -37.73 16 A PRO 125 -69.78 -173.13 17 A LEU 8 -73.72 -73.64 17 A ARG 33 -40.36 104.13 17 A PRO 34 -69.72 -171.00 17 A LEU 39 -39.07 -25.93 17 A ASN 50 -57.97 -175.09 17 A LEU 51 -40.86 162.74 17 A VAL 61 -69.48 77.91 17 A GLN 62 -34.41 112.20 17 A ARG 72 -170.82 114.98 17 A THR 85 -166.13 109.55 17 A LEU 87 -94.91 40.17 17 A ASP 88 -58.34 173.19 17 A GLN 89 -37.37 -37.21 17 A LEU 99 -36.44 -29.83 17 A VAL 116 34.12 32.21 17 A HIS 117 -59.83 -176.27 17 A LYS 119 -160.37 111.21 18 A SER 2 -57.49 88.75 18 A PHE 13 -39.36 -37.78 18 A ARG 24 -36.62 137.44 18 A GLN 62 -39.77 116.10 18 A GLN 71 35.29 29.61 18 A ARG 72 -130.88 -34.07 18 A THR 85 -162.90 109.29 18 A LEU 87 -90.27 38.80 18 A ASP 88 -57.43 176.70 18 A LEU 99 -38.23 -35.61 18 A GLN 102 -86.47 -75.14 18 A THR 103 -32.02 147.90 18 A SER 106 -37.00 118.24 18 A PRO 115 -69.75 -180.00 18 A SER 121 -174.27 133.70 18 A PRO 125 -69.76 -173.72 19 A PRO 34 -69.70 -164.82 19 A THR 36 -134.30 -47.19 19 A LEU 39 45.81 24.98 19 A GLN 49 -33.69 -34.64 19 A ASN 50 -57.12 -177.49 19 A LEU 51 -51.96 174.91 19 A VAL 61 -67.42 85.77 19 A GLN 62 -34.39 116.46 19 A PRO 63 -69.76 0.58 19 A ASP 68 -108.29 -67.98 19 A ARG 69 -35.49 -31.61 19 A ASP 70 -92.16 -70.54 19 A LEU 87 -90.14 39.02 19 A GLN 89 -36.60 -29.97 19 A LEU 99 -37.94 -38.89 19 A GLN 102 -101.05 -66.12 19 A THR 103 -36.58 106.92 19 A SER 106 -32.24 146.12 19 A SER 123 -174.83 127.08 19 A PRO 125 -69.74 -173.50 19 A SER 127 -170.54 115.20 20 A SER 5 -51.16 93.68 20 A ASN 50 -61.24 -72.05 20 A LEU 51 -176.29 144.01 20 A VAL 66 -33.80 -37.58 20 A ARG 69 -34.29 -37.39 20 A GLN 71 -131.79 -70.78 20 A ARG 72 -175.15 141.78 20 A GLN 78 -66.33 99.69 20 A THR 85 -161.12 106.71 20 A LEU 87 -92.33 43.67 20 A GLN 89 -35.44 -31.65 20 A SER 106 -33.55 122.68 Solution structure of the first PDZ domain of InaD-like protein 1 N N A ASP 12 A ASP 12 HELX_P A GLN 22 A GLN 22 1 1 11 A SER 65 A SER 65 HELX_P A ASP 70 A ASP 70 1 2 6 A SER 92 A SER 92 HELX_P A THR 103 A THR 103 1 3 12 PROTEIN BINDING PDZ domain, InaD-like protein, Inadl protein, hINADL, Pals1-associated tight junction protein, Protein associated to tight junctions, INADL, PATJ, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, PROTEIN BINDING INADL_HUMAN UNP 1 114 Q8NI35 114 229 2DB5 8 122 Q8NI35 A 1 8 122 1 cloning artifact GLY 1 2DB5 A Q8NI35 UNP 1 1 cloning artifact SER 2 2DB5 A Q8NI35 UNP 2 1 cloning artifact SER 3 2DB5 A Q8NI35 UNP 3 1 cloning artifact GLY 4 2DB5 A Q8NI35 UNP 4 1 cloning artifact SER 5 2DB5 A Q8NI35 UNP 5 1 cloning artifact SER 6 2DB5 A Q8NI35 UNP 6 1 cloning artifact GLY 7 2DB5 A Q8NI35 UNP 7 1 cloning artifact SER 123 2DB5 A Q8NI35 UNP 123 1 cloning artifact GLY 124 2DB5 A Q8NI35 UNP 124 1 cloning artifact PRO 125 2DB5 A Q8NI35 UNP 125 1 cloning artifact SER 126 2DB5 A Q8NI35 UNP 126 1 cloning artifact SER 127 2DB5 A Q8NI35 UNP 127 1 cloning artifact GLY 128 2DB5 A Q8NI35 UNP 128 3 2 anti-parallel anti-parallel anti-parallel A GLN 25 A GLN 25 A GLU 32 A GLU 32 A SER 106 A SER 106 A ARG 113 A ARG 113 A ILE 79 A ILE 79 A ILE 82 A ILE 82 A SER 42 A SER 42 A ARG 47 A ARG 47 A VAL 54 A VAL 54 A LYS 59 A LYS 59