1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Chen, G. Kennedy, S.D. Krugh, T.R. Turner, D.H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C10 H13 N4 O7 P 332.207 n PURINE RIBOSIDE-5'-MONOPHOSPHATE RNA linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N O N 39 N P N 40 N O N 41 N O N 42 N O N 43 N C N 44 R C N 45 N O N 46 S C N 47 N O N 48 R C N 49 N O N 50 R C N 51 N N N 52 N C N 53 N O N 54 N N N 55 N C N 56 N N N 57 N C N 58 N C N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N O N 74 N P N 75 N O N 76 N O N 77 N O N 78 N C N 79 R C N 80 N O N 81 S C N 82 N O N 83 R C N 84 N O N 85 R C Y 86 N N Y 87 N C Y 88 N N Y 89 N C N 90 N C N 91 N O N 92 N N N 93 N C N 94 N N N 95 N N Y 96 N C N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H Y 111 N N Y 112 N C Y 113 N N Y 114 N C Y 115 N C Y 116 N C Y 117 N N Y 118 N C Y 119 N N N 120 R C N 121 R C N 122 N O N 123 S C N 124 N O N 125 R C N 126 N O N 127 N C N 128 N O N 129 N P N 130 N O N 131 N O N 132 N O N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N O N 147 N P N 148 N O N 149 N O N 150 N O N 151 N C N 152 R C N 153 N O N 154 S C N 155 N O N 156 R C N 157 N O N 158 R C N 159 N N N 160 N C N 161 N O N 162 N N N 163 N C N 164 N O N 165 N C N 166 N C N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing Y 30 N sing Y 31 N doub N 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N sing Y 37 N doub N 38 N sing Y 39 N sing N 40 N sing N 41 N sing N 42 N doub N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N doub N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N doub N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N doub N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing Y 100 N sing Y 101 N sing Y 102 N doub N 103 N sing Y 104 N sing N 105 N sing Y 106 N doub N 107 N doub N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing Y 116 N sing Y 117 N doub Y 118 N doub N 119 N sing Y 120 N sing Y 121 N doub Y 122 N sing Y 123 N sing Y 124 N sing N 125 N sing Y 126 N doub Y 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N doub N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N doub N 184 N sing N 185 N doub N 186 N sing N 187 N sing US Biochemistry BICHAW 0033 0006-2960 45 6889 6903 10.1021/bi0524464 16734425 An Alternating Sheared AA Pair and Elements of Stability for a Single Sheared Purine-Purine Pair Flanked by Sheared GA Pairs in RNA 2006 10.2210/pdb2dd3/pdb pdb_00002dd3 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 3256.996 5'-R(*GP*GP*UP*GP*AP*AP*GP*GP*CP*U)-3' 1 syn polymer 3183.991 5'-R(*GP*CP*CP*GP*AP*AP*GP*CP*CP*(P5P))-3' 1 syn polymer no no GGUGAAGGCU GGUGAAGGCU A polyribonucleotide no yes GCCGAAGCC(P5P) GCCGAAGCCA B polyribonucleotide n n n n n n n n n n n n n n n n n n n n -18.368 1 19 A 1 B 19 -0.516 A_G1:C19_B 1 -13.214 -0.791 -0.446 -0.209 -19.229 1 19 A 2 B 18 0.434 A_G2:C18_B 2 -12.255 -0.234 -0.385 0.007 -8.290 1 28 A 3 B 17 5.718 A_U3:G17_B 3 -5.437 2.192 0.023 -0.249 10.403 9 11 A 4 B 16 -4.173 A_G4:A16_B 4 -2.657 6.735 -0.594 -4.139 8.467 9 11 A 6 B 14 -4.042 A_A6:G14_B 5 -12.445 -6.803 0.337 -3.850 4.001 1 19 A 7 B 13 0.670 A_G7:C13_B 6 -10.915 -0.571 -0.002 -0.114 10.670 1 19 A 8 B 12 0.021 A_G8:C12_B 7 -8.257 -0.620 0.157 -0.121 16.205 1 19 A 9 B 11 0.372 A_C9:G11_B 8 -16.152 0.792 -0.276 -0.191 2.796 33.762 A A 1 2 15.700 B B 19 18 3.353 9.005 0.362 -1.770 AA_G1G2:C18C19_BB 1 2.582 -4.501 32.473 -4.448 -0.222 2.972 39.265 A A 2 3 4.989 B B 18 17 3.087 3.348 0.460 -1.239 AA_G2U3:G17C18_BB 2 -0.250 0.372 39.127 -2.214 -0.712 3.044 51.343 A A 3 4 -2.836 B B 17 16 3.025 -2.456 -0.512 -0.959 AA_U3G4:A16G17_BB 3 1.978 -2.284 51.253 -0.950 0.717 6.015 30.080 A A 4 6 8.557 B B 16 14 6.728 4.367 0.580 -1.531 AA_G4A6:G14A16_BB 4 -8.507 16.669 28.553 -4.741 -4.605 3.476 61.033 A A 6 7 5.841 B B 14 13 3.581 5.924 0.440 -0.901 AA_A6G7:C13G14_BB 5 -1.631 1.608 60.753 -1.193 -0.517 2.898 30.606 A A 7 8 6.116 B B 13 12 3.070 3.213 -0.366 -1.720 AA_G7G8:C12C13_BB 6 -4.226 8.044 30.153 -3.843 -0.075 3.016 37.639 A A 8 9 4.978 B B 12 11 3.149 3.208 -0.068 -1.472 AA_G8C9:G11C12_BB 7 0.543 -0.843 37.504 -2.675 0.172 database_2 pdbx_nmr_software pdbx_nmr_spectrometer pdbx_struct_assembly pdbx_struct_oper_list struct_conn chem_comp_atom chem_comp_bond repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Data collection 1 0 2006-06-13 1 1 2008-04-30 1 2 2011-07-13 1 3 2022-03-09 1 4 2024-05-29 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _struct_conn.pdbx_leaving_atom_flag 3 sheared GA pairs closed by ua and cg WC pairs, 5'gguGGAggcu/3'pccaAAGccg 5'gguGAAggcu/3'pccgAAGccg 3 sheared GA pairs closed by ug wobble and cg WC pairs, 5'gguGGAggcu/3'pccgAAGccg PDBJ Y PDBJ 2006-01-19 REL REL structures with the lowest energy, structures with the least restraint violations 40 18 1 closest to the average 80mM NaCl, 10mM sodium phosphate, 0.5mM Na2EDTA, 2mM total duplex concentrations, pH 5.1, pD 7.3 processing Felix refinement Discover collection VNMR 500 Varian INOVA 500 Bruker AVANCE 600 Varian INOVA G 1 n 1 G 1 A G 2 n 2 G 2 A U 3 n 3 U 3 A G 4 n 4 G 4 A A 5 n 5 A 5 A A 6 n 6 A 6 A G 7 n 7 G 7 A G 8 n 8 G 8 A C 9 n 9 C 9 A U 10 n 10 U 10 A G 11 n 1 G 11 B C 12 n 2 C 12 B C 13 n 3 C 13 B G 14 n 4 G 14 B A 15 n 5 A 15 B A 16 n 6 A 16 B G 17 n 7 G 17 B C 18 n 8 C 18 B C 19 n 9 C 19 B P5P 20 n 10 P5P 20 B author_defined_assembly 2 dimeric B P5P 20 PURINE RIBOSIDE-5'-MONOPHOSPHATE B P5P 10 A 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A 5 0.055 SIDE CHAIN 1 B A 15 0.059 SIDE CHAIN 2 A A 5 0.070 SIDE CHAIN 2 B G 11 0.064 SIDE CHAIN 2 B G 14 0.050 SIDE CHAIN 2 B A 16 0.067 SIDE CHAIN 3 B A 15 0.066 SIDE CHAIN 4 B G 14 0.057 SIDE CHAIN 4 B A 15 0.059 SIDE CHAIN 5 A A 5 0.065 SIDE CHAIN 5 B G 11 0.060 SIDE CHAIN 5 B A 15 0.068 SIDE CHAIN 5 B A 16 0.065 SIDE CHAIN 6 B A 16 0.088 SIDE CHAIN 7 A A 5 0.077 SIDE CHAIN 7 B G 11 0.056 SIDE CHAIN 7 B G 14 0.065 SIDE CHAIN 8 A A 5 0.053 SIDE CHAIN 8 A A 6 0.062 SIDE CHAIN 8 A G 7 0.080 SIDE CHAIN 8 A G 8 0.068 SIDE CHAIN 8 B A 15 0.067 SIDE CHAIN 9 A A 6 0.060 SIDE CHAIN 9 A G 7 0.072 SIDE CHAIN 9 A G 8 0.072 SIDE CHAIN 9 B G 11 0.059 SIDE CHAIN 9 B A 15 0.080 SIDE CHAIN 11 A A 5 0.077 SIDE CHAIN 11 A G 8 0.060 SIDE CHAIN 11 B A 15 0.062 SIDE CHAIN 12 A A 5 0.076 SIDE CHAIN 12 B A 15 0.076 SIDE CHAIN 13 B A 15 0.066 SIDE CHAIN 14 B G 14 0.069 SIDE CHAIN 15 A G 4 0.085 SIDE CHAIN 15 B G 11 0.059 SIDE CHAIN 15 B G 14 0.080 SIDE CHAIN 15 B A 16 0.060 SIDE CHAIN 16 B G 11 0.057 SIDE CHAIN 16 B A 16 0.076 SIDE CHAIN 17 A G 4 0.052 SIDE CHAIN 17 A A 6 0.060 SIDE CHAIN 18 B G 14 0.062 SIDE CHAIN 1 5.07 0.70 108.50 113.57 A A A O4' C1' N1 U U U 3 3 3 N 1 5.02 0.70 108.50 113.52 A A A O4' C1' N1 C C C 9 9 9 N 1 4.46 0.70 108.50 112.96 B B B O4' C1' N1 C C C 12 12 12 N 1 5.20 0.70 108.50 113.70 B B B O4' C1' N1 C C C 13 13 13 N 2 5.61 0.70 108.50 114.11 A A A O4' C1' N1 U U U 3 3 3 N 2 4.31 0.70 108.50 112.81 A A A O4' C1' N1 C C C 9 9 9 N 2 4.61 0.70 108.50 113.11 B B B O4' C1' N1 C C C 12 12 12 N 2 5.06 0.70 108.50 113.56 B B B O4' C1' N1 C C C 13 13 13 N 2 4.20 0.70 108.50 112.70 B B B O4' C1' N1 C C C 19 19 19 N 3 5.02 0.70 108.50 113.52 A A A O4' C1' N1 U U U 3 3 3 N 3 5.12 0.70 108.50 113.62 A A A O4' C1' N1 C C C 9 9 9 N 3 4.64 0.70 108.50 113.14 B B B O4' C1' N1 C C C 12 12 12 N 3 5.64 0.70 108.50 114.14 B B B O4' C1' N1 C C C 13 13 13 N 4 4.75 0.70 108.50 113.25 A A A O4' C1' N1 U U U 3 3 3 N 4 5.08 0.70 108.50 113.58 A A A O4' C1' N1 C C C 9 9 9 N 4 4.49 0.70 108.50 112.99 B B B O4' C1' N1 C C C 12 12 12 N 4 5.29 0.70 108.50 113.79 B B B O4' C1' N1 C C C 13 13 13 N 4 4.22 0.70 108.50 112.72 B B B O4' C1' N1 C C C 19 19 19 N 5 5.15 0.70 108.50 113.65 A A A O4' C1' N1 U U U 3 3 3 N 5 4.40 0.70 108.50 112.90 A A A O4' C1' N1 C C C 9 9 9 N 5 4.61 0.70 108.50 113.11 B B B O4' C1' N1 C C C 12 12 12 N 5 5.55 0.70 108.50 114.05 B B B O4' C1' N1 C C C 13 13 13 N 6 4.35 0.70 108.50 112.85 A A A O4' C1' N9 G G G 2 2 2 N 6 5.60 0.70 108.50 114.10 A A A O4' C1' N1 U U U 3 3 3 N 6 4.97 0.70 108.50 113.47 A A A O4' C1' N9 G G G 7 7 7 N 6 5.29 0.70 108.50 113.79 A A A O4' C1' N1 C C C 9 9 9 N 6 4.23 0.70 108.50 112.73 A A A O4' C1' N1 U U U 10 10 10 N 6 4.68 0.70 108.50 113.18 B B B O4' C1' N1 C C C 12 12 12 N 6 4.91 0.70 108.50 113.41 B B B O4' C1' N1 C C C 13 13 13 N 6 4.41 0.70 108.50 112.91 B B B O4' C1' N1 C C C 19 19 19 N 7 5.27 0.70 108.50 113.77 A A A O4' C1' N1 U U U 3 3 3 N 7 5.28 0.70 108.50 113.78 A A A O4' C1' N1 C C C 9 9 9 N 7 4.55 0.70 108.50 113.05 B B B O4' C1' N1 C C C 12 12 12 N 7 5.78 0.70 108.50 114.28 B B B O4' C1' N1 C C C 13 13 13 N 7 4.30 0.70 108.50 112.80 B B B O4' C1' N1 C C C 19 19 19 N 8 4.45 0.70 108.50 112.95 A A A O4' C1' N1 U U U 3 3 3 N 8 5.22 0.70 108.50 113.72 A A A O4' C1' N1 C C C 9 9 9 N 8 5.12 0.70 108.50 113.62 B B B O4' C1' N1 C C C 12 12 12 N 8 5.62 0.70 108.50 114.12 B B B O4' C1' N1 C C C 13 13 13 N 9 4.91 0.70 108.50 113.41 A A A O4' C1' N1 U U U 3 3 3 N 9 6.29 0.90 109.80 116.09 A A A C5' C4' O4' U U U 10 10 10 N 9 6.50 0.70 108.50 115.00 A A A O4' C1' N1 U U U 10 10 10 N 9 4.74 0.70 108.50 113.24 B B B O4' C1' N1 C C C 12 12 12 N 9 5.55 0.70 108.50 114.05 B B B O4' C1' N1 C C C 13 13 13 N 10 5.24 0.70 108.50 113.74 A A A O4' C1' N1 U U U 3 3 3 N 10 4.95 0.70 108.50 113.45 A A A O4' C1' N1 C C C 9 9 9 N 10 4.54 0.70 108.50 113.04 B B B O4' C1' N1 C C C 12 12 12 N 10 5.23 0.70 108.50 113.73 B B B O4' C1' N1 C C C 13 13 13 N 10 4.28 0.70 108.50 112.78 B B B O4' C1' N1 C C C 19 19 19 N 11 4.34 0.70 108.50 112.84 A A A O4' C1' N9 G G G 2 2 2 N 11 4.53 0.70 108.50 113.03 A A A O4' C1' N1 U U U 3 3 3 N 11 4.48 0.70 108.50 112.98 A A A O4' C1' N1 C C C 9 9 9 N 11 4.83 0.70 108.50 113.33 B B B O4' C1' N1 C C C 12 12 12 N 11 5.26 0.70 108.50 113.76 B B B O4' C1' N1 C C C 13 13 13 N 11 7.37 1.20 119.70 127.07 B B B C3' O3' P A A A 15 15 16 Y 12 5.58 0.70 108.50 114.08 A A A O4' C1' N1 U U U 3 3 3 N 12 4.78 0.70 108.50 113.28 B B B O4' C1' N1 C C C 12 12 12 N 12 5.00 0.70 108.50 113.50 B B B O4' C1' N1 C C C 13 13 13 N 12 4.22 0.70 108.50 112.72 B B B O4' C1' N1 C C C 19 19 19 N 13 4.76 0.70 108.50 113.26 A A A O4' C1' N1 U U U 3 3 3 N 13 5.78 0.70 108.50 114.28 A A A O4' C1' N9 G G G 7 7 7 N 13 4.94 0.70 108.50 113.44 A A A O4' C1' N1 C C C 9 9 9 N 13 4.60 0.70 108.50 113.10 B B B O4' C1' N1 C C C 12 12 12 N 13 5.29 0.70 108.50 113.79 B B B O4' C1' N1 C C C 13 13 13 N 14 5.79 0.70 108.50 114.29 A A A O4' C1' N1 U U U 3 3 3 N 14 5.22 0.70 108.50 113.72 A A A O4' C1' N1 C C C 9 9 9 N 14 4.79 0.70 108.50 113.29 B B B O4' C1' N1 C C C 12 12 12 N 14 5.18 0.70 108.50 113.68 B B B O4' C1' N1 C C C 13 13 13 N 14 4.22 0.70 108.50 112.72 B B B O4' C1' N1 C C C 19 19 19 N 15 4.24 0.70 108.50 112.74 A A A O4' C1' N9 G G G 2 2 2 N 15 5.10 0.70 108.50 113.60 A A A O4' C1' N1 U U U 3 3 3 N 15 4.44 0.70 108.50 112.94 A A A O4' C1' N9 G G G 4 4 4 N 15 4.32 0.70 108.50 112.82 A A A O4' C1' N1 C C C 9 9 9 N 15 4.35 0.70 108.50 112.85 B B B O4' C1' N1 C C C 12 12 12 N 15 4.97 0.70 108.50 113.47 B B B O4' C1' N1 C C C 13 13 13 N 15 4.30 0.70 108.50 112.80 B B B O4' C1' N9 A A A 16 16 16 N 16 5.60 0.70 108.50 114.10 A A A O4' C1' N1 U U U 3 3 3 N 16 5.16 0.70 108.50 113.66 A A A O4' C1' N1 C C C 9 9 9 N 16 4.55 0.70 108.50 113.05 B B B O4' C1' N1 C C C 12 12 12 N 16 5.86 0.70 108.50 114.36 B B B O4' C1' N1 C C C 13 13 13 N 16 4.22 0.70 108.50 112.72 B B B O4' C1' N1 C C C 19 19 19 N 17 5.05 0.70 108.50 113.55 A A A O4' C1' N1 U U U 3 3 3 N 17 5.08 0.70 108.50 113.58 A A A O4' C1' N1 C C C 9 9 9 N 17 4.69 0.70 108.50 113.19 B B B O4' C1' N1 C C C 12 12 12 N 17 5.72 0.70 108.50 114.22 B B B O4' C1' N1 C C C 13 13 13 N 17 5.28 0.70 108.50 113.78 B B B O4' C1' N1 C C C 19 19 19 N 18 4.24 0.70 108.50 112.74 A A A O4' C1' N1 U U U 3 3 3 N 18 5.03 0.70 108.50 113.53 A A A O4' C1' N1 C C C 9 9 9 N 18 4.41 0.70 108.50 112.91 B B B O4' C1' N1 C C C 12 12 12 N 18 5.25 0.70 108.50 113.75 B B B O4' C1' N1 C C C 13 13 13 N 18 4.23 0.70 108.50 112.73 B B B O4' C1' N1 C C C 19 19 19 N An alternating sheared AA pair in 5'GGUGAAGGCU/3'PCCGAAGCCG: II. The minor conformation with A6/A5/A16 stack 1 N N 2 N N covale 1.616 both B C 19 B O3' C 9 1_555 B P5P 20 B P P5P 10 1_555 hydrog WATSON-CRICK A G 1 A N1 G 1 1_555 B C 19 B N3 C 9 1_555 hydrog WATSON-CRICK A G 1 A N2 G 1 1_555 B C 19 B O2 C 9 1_555 hydrog WATSON-CRICK A G 1 A O6 G 1 1_555 B C 19 B N4 C 9 1_555 hydrog WATSON-CRICK A G 2 A N1 G 2 1_555 B C 18 B N3 C 8 1_555 hydrog WATSON-CRICK A G 2 A N2 G 2 1_555 B C 18 B O2 C 8 1_555 hydrog WATSON-CRICK A G 2 A O6 G 2 1_555 B C 18 B N4 C 8 1_555 hydrog TYPE_28_PAIR A U 3 A N3 U 3 1_555 B G 17 B O6 G 7 1_555 hydrog TYPE_28_PAIR A U 3 A O2 U 3 1_555 B G 17 B N1 G 7 1_555 hydrog TYPE_11_PAIR A G 4 A N2 G 4 1_555 B A 16 B N7 A 6 1_555 hydrog TYPE_11_PAIR A G 4 A N3 G 4 1_555 B A 16 B N6 A 6 1_555 hydrog TYPE_11_PAIR A A 6 A N6 A 6 1_555 B G 14 B N3 G 4 1_555 hydrog TYPE_11_PAIR A A 6 A N7 A 6 1_555 B G 14 B N2 G 4 1_555 hydrog WATSON-CRICK A G 7 A N1 G 7 1_555 B C 13 B N3 C 3 1_555 hydrog WATSON-CRICK A G 7 A N2 G 7 1_555 B C 13 B O2 C 3 1_555 hydrog WATSON-CRICK A G 7 A O6 G 7 1_555 B C 13 B N4 C 3 1_555 hydrog WATSON-CRICK A G 8 A N1 G 8 1_555 B C 12 B N3 C 2 1_555 hydrog WATSON-CRICK A G 8 A N2 G 8 1_555 B C 12 B O2 C 2 1_555 hydrog WATSON-CRICK A G 8 A O6 G 8 1_555 B C 12 B N4 C 2 1_555 hydrog WATSON-CRICK A C 9 A N3 C 9 1_555 B G 11 B N1 G 1 1_555 hydrog WATSON-CRICK A C 9 A N4 C 9 1_555 B G 11 B O6 G 1 1_555 hydrog WATSON-CRICK A C 9 A O2 C 9 1_555 B G 11 B N2 G 1 1_555 RNA rapid conformation exchange, alternating sheared AA pair, sequence specific A-minor motif, Kink-turn motif, thermodynamics, RNA secondary structure prediction, RNA 2DD3 PDB 1 2DD3 2DD3 PDB 2 2DD3 1 10 2DD3 1 10 2DD3 A 1 1 10 11 20 2DD3 11 20 2DD3 B 2 1 10 1 P 1