1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Tomizawa, T.
Koshiba, S.
Watanabe, S.
Harada, T.
Kigawa, T.
Yokoyama, S.
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
Solution structure of the 12th filamin domain from human Filamin-B
10.2210/pdb2dic/pdb
pdb_00002dic
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
10707.804
Filamin-B
Filamin domain
1
man
polymer
FLN-B, Beta-filamin, Actin-binding-like protein, Thyroid autoantigen, Truncated actin-binding protein, Truncated ABP, ABP-280 homolog, ABP-278, Filamin 3, Filamin homolog 1, Fh1
no
no
GSSGSSGGCQPSRVQAQGPGLKEAFTNKPNVFTVVTRGAGIGGLGITVEGPSESKINCRDNKDGSCSAEYIPFAPGDYDV
NITYGGAHIPGSPFRVPVKDVVDPS
GSSGSSGGCQPSRVQAQGPGLKEAFTNKPNVFTVVTRGAGIGGLGITVEGPSESKINCRDNKDGSCSAEYIPFAPGDYDV
NITYGGAHIPGSPFRVPVKDVVDPS
A
hsk003002600.5
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
sample
Cell-free protein synthesis
FLNB
9606
Homo sapiens
Cell free synthesis
PLASMID
P060123-12
RIKEN Structural Genomics/Proteomics Initiative
RSGI
NPPSFA, National Project on Protein Structural and Functional Analyses
database_2
pdbx_nmr_software
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2006-09-29
1
1
2008-04-30
1
2
2011-07-13
1
3
2022-03-09
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
_struct_ref_seq_dif.details
Y
PDBJ
Y
PDBJ
2006-03-29
REL
REL
target function, structures with the lowest energy, structures with the least restraint violations
100
20
3D_15N-separated_NOESY
3D_13C-separated_NOESY
120mM
7.0
ambient
298
K
torsion angle dynamics, restrainted molecular dynamics
1
lowest energy
1.18mM Filamin domain U-15N,13C; 20mM d-Tris-HCl(pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 10% D2O
90% H2O/10% D2O
Bruker
collection
XwinNMR
3.5
Delaglio, F.
processing
NMRPipe
20030801
Johnson, B.A.
data analysis
NMRView
5.0.4
Kobayashi, N.
data analysis
KUJIRA
0.9742
Guntert, P.
structure solution
CYANA
2.0.17
Guntert, P.
refinement
CYANA
2.0.17
800
Bruker
AVANCE
GLY
1
n
1
GLY
1
A
SER
2
n
2
SER
2
A
SER
3
n
3
SER
3
A
GLY
4
n
4
GLY
4
A
SER
5
n
5
SER
5
A
SER
6
n
6
SER
6
A
GLY
7
n
7
GLY
7
A
GLY
8
n
8
GLY
8
A
CYS
9
n
9
CYS
9
A
GLN
10
n
10
GLN
10
A
PRO
11
n
11
PRO
11
A
SER
12
n
12
SER
12
A
ARG
13
n
13
ARG
13
A
VAL
14
n
14
VAL
14
A
GLN
15
n
15
GLN
15
A
ALA
16
n
16
ALA
16
A
GLN
17
n
17
GLN
17
A
GLY
18
n
18
GLY
18
A
PRO
19
n
19
PRO
19
A
GLY
20
n
20
GLY
20
A
LEU
21
n
21
LEU
21
A
LYS
22
n
22
LYS
22
A
GLU
23
n
23
GLU
23
A
ALA
24
n
24
ALA
24
A
PHE
25
n
25
PHE
25
A
THR
26
n
26
THR
26
A
ASN
27
n
27
ASN
27
A
LYS
28
n
28
LYS
28
A
PRO
29
n
29
PRO
29
A
ASN
30
n
30
ASN
30
A
VAL
31
n
31
VAL
31
A
PHE
32
n
32
PHE
32
A
THR
33
n
33
THR
33
A
VAL
34
n
34
VAL
34
A
VAL
35
n
35
VAL
35
A
THR
36
n
36
THR
36
A
ARG
37
n
37
ARG
37
A
GLY
38
n
38
GLY
38
A
ALA
39
n
39
ALA
39
A
GLY
40
n
40
GLY
40
A
ILE
41
n
41
ILE
41
A
GLY
42
n
42
GLY
42
A
GLY
43
n
43
GLY
43
A
LEU
44
n
44
LEU
44
A
GLY
45
n
45
GLY
45
A
ILE
46
n
46
ILE
46
A
THR
47
n
47
THR
47
A
VAL
48
n
48
VAL
48
A
GLU
49
n
49
GLU
49
A
GLY
50
n
50
GLY
50
A
PRO
51
n
51
PRO
51
A
SER
52
n
52
SER
52
A
GLU
53
n
53
GLU
53
A
SER
54
n
54
SER
54
A
LYS
55
n
55
LYS
55
A
ILE
56
n
56
ILE
56
A
ASN
57
n
57
ASN
57
A
CYS
58
n
58
CYS
58
A
ARG
59
n
59
ARG
59
A
ASP
60
n
60
ASP
60
A
ASN
61
n
61
ASN
61
A
LYS
62
n
62
LYS
62
A
ASP
63
n
63
ASP
63
A
GLY
64
n
64
GLY
64
A
SER
65
n
65
SER
65
A
CYS
66
n
66
CYS
66
A
SER
67
n
67
SER
67
A
ALA
68
n
68
ALA
68
A
GLU
69
n
69
GLU
69
A
TYR
70
n
70
TYR
70
A
ILE
71
n
71
ILE
71
A
PRO
72
n
72
PRO
72
A
PHE
73
n
73
PHE
73
A
ALA
74
n
74
ALA
74
A
PRO
75
n
75
PRO
75
A
GLY
76
n
76
GLY
76
A
ASP
77
n
77
ASP
77
A
TYR
78
n
78
TYR
78
A
ASP
79
n
79
ASP
79
A
VAL
80
n
80
VAL
80
A
ASN
81
n
81
ASN
81
A
ILE
82
n
82
ILE
82
A
THR
83
n
83
THR
83
A
TYR
84
n
84
TYR
84
A
GLY
85
n
85
GLY
85
A
GLY
86
n
86
GLY
86
A
ALA
87
n
87
ALA
87
A
HIS
88
n
88
HIS
88
A
ILE
89
n
89
ILE
89
A
PRO
90
n
90
PRO
90
A
GLY
91
n
91
GLY
91
A
SER
92
n
92
SER
92
A
PRO
93
n
93
PRO
93
A
PHE
94
n
94
PHE
94
A
ARG
95
n
95
ARG
95
A
VAL
96
n
96
VAL
96
A
PRO
97
n
97
PRO
97
A
VAL
98
n
98
VAL
98
A
LYS
99
n
99
LYS
99
A
ASP
100
n
100
ASP
100
A
VAL
101
n
101
VAL
101
A
VAL
102
n
102
VAL
102
A
ASP
103
n
103
ASP
103
A
PRO
104
n
104
PRO
104
A
SER
105
n
105
SER
105
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLN
17
A
N
GLN
17
A
O
THR
33
A
O
THR
33
A
N
ASN
30
A
N
ASN
30
A
O
TYR
70
A
O
TYR
70
A
O
GLU
69
A
O
GLU
69
A
N
ASN
57
A
N
ASN
57
A
N
ALA
24
A
N
ALA
24
A
O
LYS
99
A
O
LYS
99
A
O
VAL
98
A
O
VAL
98
A
N
GLY
76
A
N
GLY
76
A
O
ASN
81
A
O
ASN
81
A
N
THR
47
A
N
THR
47
A
N
ALA
24
A
N
ALA
24
A
O
LYS
99
A
O
LYS
99
A
O
VAL
98
A
O
VAL
98
A
N
GLY
76
A
N
GLY
76
A
N
TYR
84
A
N
TYR
84
A
O
ALA
87
A
O
ALA
87
1
A
PRO
51
-69.76
2.78
1
A
LYS
62
-92.21
42.85
1
A
ASP
63
-131.97
-57.04
1
A
PRO
90
-69.80
93.39
2
A
LYS
62
-85.60
33.03
2
A
ASP
63
-120.43
-51.67
2
A
SER
65
-171.90
-178.75
2
A
PRO
90
-69.76
89.70
3
A
SER
2
-42.54
153.85
3
A
CYS
9
-35.35
135.78
3
A
PRO
51
-69.77
0.98
3
A
LYS
62
-89.76
39.06
3
A
ASP
63
-127.09
-58.80
3
A
PRO
90
-69.77
81.39
4
A
SER
3
-100.66
42.48
4
A
SER
5
-174.35
146.37
4
A
LYS
62
-87.57
42.31
4
A
ASP
63
-132.73
-53.17
4
A
PRO
90
-69.82
93.90
4
A
VAL
102
-173.51
137.27
5
A
SER
2
-105.90
-60.89
5
A
LYS
62
-85.09
48.21
5
A
ASP
63
-132.34
-56.85
5
A
PRO
90
-69.77
92.34
6
A
SER
2
-60.38
94.07
6
A
ALA
39
-87.91
31.32
6
A
LYS
62
-82.65
44.79
6
A
PRO
90
-69.79
98.33
6
A
PRO
97
-69.70
97.90
7
A
SER
2
-58.99
107.62
7
A
THR
36
-99.46
47.02
7
A
PRO
51
-69.69
0.41
7
A
LYS
62
-86.50
31.54
7
A
PRO
90
-69.74
90.79
8
A
THR
36
-98.80
35.58
8
A
LYS
62
-87.86
37.83
8
A
ASP
63
-122.21
-61.00
8
A
PRO
90
-69.77
92.96
8
A
PRO
97
-69.80
90.32
9
A
LYS
22
-92.57
-64.74
9
A
ARG
37
-59.57
-74.19
9
A
ILE
41
-69.78
96.62
9
A
PRO
51
-69.72
0.01
9
A
LYS
62
-89.04
41.13
9
A
ASP
63
-121.43
-54.59
9
A
PRO
90
-69.72
85.95
10
A
LYS
62
-87.12
40.09
10
A
SER
65
-171.95
-178.18
10
A
PRO
90
-69.75
93.85
10
A
PRO
97
-69.73
99.19
11
A
LYS
62
-85.34
46.04
11
A
SER
65
-175.03
-175.32
11
A
PRO
90
-69.84
85.92
12
A
SER
3
-90.04
41.46
12
A
ILE
41
-113.67
78.16
12
A
SER
65
-170.45
-176.13
12
A
PRO
90
-69.72
94.40
12
A
PRO
104
-69.74
-177.56
13
A
LYS
62
-89.01
37.25
13
A
PRO
90
-69.77
88.61
14
A
PRO
51
-69.71
2.59
14
A
PRO
90
-69.69
97.62
15
A
SER
2
-39.04
127.81
15
A
SER
6
-59.60
176.74
15
A
LYS
62
-89.65
47.59
15
A
ASP
63
-124.48
-56.09
15
A
PRO
90
-69.82
95.51
15
A
PRO
97
-69.81
98.99
16
A
LYS
62
-84.17
40.80
16
A
PRO
90
-69.82
85.98
16
A
PRO
97
-69.75
93.76
16
A
PRO
104
-69.80
99.44
17
A
ARG
37
-51.40
87.09
17
A
PRO
51
-69.71
2.29
17
A
LYS
62
-88.75
44.35
17
A
ASP
63
-134.90
-62.77
17
A
PRO
90
-69.73
88.93
17
A
VAL
102
-33.89
123.09
18
A
ALA
39
-103.31
-62.28
18
A
LYS
62
-86.26
34.70
18
A
PRO
90
-69.79
89.53
19
A
SER
6
39.77
39.31
19
A
LYS
62
-85.02
36.27
19
A
PRO
90
-69.73
95.83
20
A
LYS
62
-108.70
40.87
20
A
ASP
63
-122.58
-70.13
20
A
PRO
90
-69.77
93.44
20
A
PRO
97
-69.78
99.57
Solution structure of the 12th filamin domain from human Filamin-B
1
N
N
A
GLY
18
A
GLY
18
HELX_P
A
GLU
23
A
GLU
23
1
1
6
STRUCTURAL PROTEIN
beta-sandwich, immunoglobulin-like fold, filamin domain, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural protein
A
SER
92
A
SER
92
1
A
PRO
93
A
PRO
93
-0.05
A
SER
92
A
SER
92
2
A
PRO
93
A
PRO
93
-0.09
A
SER
92
A
SER
92
3
A
PRO
93
A
PRO
93
-0.08
A
SER
92
A
SER
92
4
A
PRO
93
A
PRO
93
-0.01
A
SER
92
A
SER
92
5
A
PRO
93
A
PRO
93
-0.01
A
SER
92
A
SER
92
6
A
PRO
93
A
PRO
93
-0.05
A
SER
92
A
SER
92
7
A
PRO
93
A
PRO
93
0.02
A
SER
92
A
SER
92
8
A
PRO
93
A
PRO
93
-0.03
A
SER
92
A
SER
92
9
A
PRO
93
A
PRO
93
-0.07
A
SER
92
A
SER
92
10
A
PRO
93
A
PRO
93
-0.02
A
SER
92
A
SER
92
11
A
PRO
93
A
PRO
93
-0.02
A
SER
92
A
SER
92
12
A
PRO
93
A
PRO
93
0.01
A
SER
92
A
SER
92
13
A
PRO
93
A
PRO
93
0.00
A
SER
92
A
SER
92
14
A
PRO
93
A
PRO
93
-0.01
A
SER
92
A
SER
92
15
A
PRO
93
A
PRO
93
-0.04
A
SER
92
A
SER
92
16
A
PRO
93
A
PRO
93
0.01
A
SER
92
A
SER
92
17
A
PRO
93
A
PRO
93
-0.07
A
SER
92
A
SER
92
18
A
PRO
93
A
PRO
93
-0.02
A
SER
92
A
SER
92
19
A
PRO
93
A
PRO
93
0.01
A
SER
92
A
SER
92
20
A
PRO
93
A
PRO
93
0.01
FLNB_HUMAN
UNP
1
1325
O75369
1325
1422
2DIC
8
105
O75369
A
1
8
105
1
cloning artifact
GLY
1
2DIC
A
O75369
UNP
1
1
cloning artifact
SER
2
2DIC
A
O75369
UNP
2
1
cloning artifact
SER
3
2DIC
A
O75369
UNP
3
1
cloning artifact
GLY
4
2DIC
A
O75369
UNP
4
1
cloning artifact
SER
5
2DIC
A
O75369
UNP
5
1
cloning artifact
SER
6
2DIC
A
O75369
UNP
6
1
cloning artifact
GLY
7
2DIC
A
O75369
UNP
7
4
4
4
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
GLN
15
A
GLN
15
A
GLN
17
A
GLN
17
A
ASN
30
A
ASN
30
A
VAL
35
A
VAL
35
A
CYS
66
A
CYS
66
A
TYR
70
A
TYR
70
A
ASN
57
A
ASN
57
A
ASP
60
A
ASP
60
A
ALA
24
A
ALA
24
A
PHE
25
A
PHE
25
A
PHE
94
A
PHE
94
A
LYS
99
A
LYS
99
A
GLY
76
A
GLY
76
A
TYR
84
A
TYR
84
A
LEU
44
A
LEU
44
A
GLU
49
A
GLU
49
A
ALA
24
A
ALA
24
A
PHE
25
A
PHE
25
A
PHE
94
A
PHE
94
A
LYS
99
A
LYS
99
A
GLY
76
A
GLY
76
A
TYR
84
A
TYR
84
A
ALA
87
A
ALA
87
A
HIS
88
A
HIS
88