1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Kato, K. Yamaguchi, Y. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be Published 0353 Solution structure of the a' domain of thermophilic fungal protein disulfide isomerase 10.2210/pdb2djj/pdb pdb_00002djj 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 13123.905 Protein disulfide-isomerase 5.3.4.1 a' domain 1 man polymer PDI no no GPLGSEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQ GFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGKYKAA GPLGSEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQ GFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGKYKAA A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Humicola Escherichia Escherichia coli sample 34413 Humicola insolens 469008 Escherichia coli BL21(DE3) BL21(DE3) PLASMID pGEX6P-1 database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2006-04-25 1 1 2008-04-30 1 2 2011-07-13 1 3 2022-03-09 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _struct_ref_seq_dif.details 2006-04-25 SPRSDE PDBJ Y PDBJ 2006-04-04 REL structures with the lowest energy 100 10 3D_13C-separated_NOESY 3D_15N-separated_NOESY 2D NOESY 1H-15N HSQC 0.16 6 1 atm 310 K distance geometry simulated annealing 1 lowest energy 1.0mM protein disulfide isomerase a' domain U-15N,13C; 10mM sodium phosphate buffer, 100mM KCl, 10mM ditiothreitol; 90% H2O, 10% D2O 90% H2O/10% D2O 1.0mM protein disulfide isomerase a' domain; 10mM sodium phosphate buffer, 100mM KCl, 10mM ditiothreitol; 99% D2O 99% D2O 0.3mM protein disulfide isomerase a' domain U-15N; 10mM sodium phosphate buffer, 100mM KCl, 10mM ditiothreitol, 10mg/ml Pf1 phage; 90% H2O, 10% D2O 90% H2O/10% D2O collection XwinNMR 2.6 collection Delta 4.3.3 processing XwinNMR 2.6 Goddard and Kneller data analysis Sparky 3.1 Guntert structure solution CYANA 2.1 refinement CNS 1.1 920 JEOL ECA 800 Bruker DRX GLY 1 n 1 GLY 1 A PRO 2 n 2 PRO 2 A LEU 3 n 3 LEU 3 A GLY 4 n 4 GLY 4 A SER 5 n 5 SER 5 A GLU 6 n 6 GLU 6 A GLY 7 n 7 GLY 7 A PRO 8 n 8 PRO 8 A VAL 9 n 9 VAL 9 A THR 10 n 10 THR 10 A VAL 11 n 11 VAL 11 A VAL 12 n 12 VAL 12 A VAL 13 n 13 VAL 13 A ALA 14 n 14 ALA 14 A LYS 15 n 15 LYS 15 A ASN 16 n 16 ASN 16 A TYR 17 n 17 TYR 17 A ASN 18 n 18 ASN 18 A GLU 19 n 19 GLU 19 A ILE 20 n 20 ILE 20 A VAL 21 n 21 VAL 21 A LEU 22 n 22 LEU 22 A ASP 23 n 23 ASP 23 A ASP 24 n 24 ASP 24 A THR 25 n 25 THR 25 A LYS 26 n 26 LYS 26 A ASP 27 n 27 ASP 27 A VAL 28 n 28 VAL 28 A LEU 29 n 29 LEU 29 A ILE 30 n 30 ILE 30 A GLU 31 n 31 GLU 31 A PHE 32 n 32 PHE 32 A TYR 33 n 33 TYR 33 A ALA 34 n 34 ALA 34 A PRO 35 n 35 PRO 35 A TRP 36 n 36 TRP 36 A CYS 37 n 37 CYS 37 A GLY 38 n 38 GLY 38 A HIS 39 n 39 HIS 39 A CYS 40 n 40 CYS 40 A LYS 41 n 41 LYS 41 A ALA 42 n 42 ALA 42 A LEU 43 n 43 LEU 43 A ALA 44 n 44 ALA 44 A PRO 45 n 45 PRO 45 A LYS 46 n 46 LYS 46 A TYR 47 n 47 TYR 47 A GLU 48 n 48 GLU 48 A GLU 49 n 49 GLU 49 A LEU 50 n 50 LEU 50 A GLY 51 n 51 GLY 51 A ALA 52 n 52 ALA 52 A LEU 53 n 53 LEU 53 A TYR 54 n 54 TYR 54 A ALA 55 n 55 ALA 55 A LYS 56 n 56 LYS 56 A SER 57 n 57 SER 57 A GLU 58 n 58 GLU 58 A PHE 59 n 59 PHE 59 A LYS 60 n 60 LYS 60 A ASP 61 n 61 ASP 61 A ARG 62 n 62 ARG 62 A VAL 63 n 63 VAL 63 A VAL 64 n 64 VAL 64 A ILE 65 n 65 ILE 65 A ALA 66 n 66 ALA 66 A LYS 67 n 67 LYS 67 A VAL 68 n 68 VAL 68 A ASP 69 n 69 ASP 69 A ALA 70 n 70 ALA 70 A THR 71 n 71 THR 71 A ALA 72 n 72 ALA 72 A ASN 73 n 73 ASN 73 A ASP 74 n 74 ASP 74 A VAL 75 n 75 VAL 75 A PRO 76 n 76 PRO 76 A ASP 77 n 77 ASP 77 A GLU 78 n 78 GLU 78 A ILE 79 n 79 ILE 79 A GLN 80 n 80 GLN 80 A GLY 81 n 81 GLY 81 A PHE 82 n 82 PHE 82 A PRO 83 n 83 PRO 83 A THR 84 n 84 THR 84 A ILE 85 n 85 ILE 85 A LYS 86 n 86 LYS 86 A LEU 87 n 87 LEU 87 A TYR 88 n 88 TYR 88 A PRO 89 n 89 PRO 89 A ALA 90 n 90 ALA 90 A GLY 91 n 91 GLY 91 A ALA 92 n 92 ALA 92 A LYS 93 n 93 LYS 93 A GLY 94 n 94 GLY 94 A GLN 95 n 95 GLN 95 A PRO 96 n 96 PRO 96 A VAL 97 n 97 VAL 97 A THR 98 n 98 THR 98 A TYR 99 n 99 TYR 99 A SER 100 n 100 SER 100 A GLY 101 n 101 GLY 101 A SER 102 n 102 SER 102 A ARG 103 n 103 ARG 103 A THR 104 n 104 THR 104 A VAL 105 n 105 VAL 105 A GLU 106 n 106 GLU 106 A ASP 107 n 107 ASP 107 A LEU 108 n 108 LEU 108 A ILE 109 n 109 ILE 109 A LYS 110 n 110 LYS 110 A PHE 111 n 111 PHE 111 A ILE 112 n 112 ILE 112 A ALA 113 n 113 ALA 113 A GLU 114 n 114 GLU 114 A ASN 115 n 115 ASN 115 A GLY 116 n 116 GLY 116 A LYS 117 n 117 LYS 117 A TYR 118 n 118 TYR 118 A LYS 119 n 119 LYS 119 A ALA 120 n 120 ALA 120 A ALA 121 n 121 ALA 121 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N THR 10 A N THR 10 A O LYS 67 A O LYS 67 A O VAL 64 A O VAL 64 A N LEU 29 A N LEU 29 A N ILE 30 A N ILE 30 A O LYS 86 A O LYS 86 1 A A O H PHE ASN 111 115 1.55 2 A A O H PHE ASN 111 115 1.57 3 A A O H PHE ASN 111 115 1.52 3 A A O H ASN GLU 16 19 1.54 4 A A O H PHE ASN 111 115 1.59 4 A A O H SER THR 102 104 1.60 5 A A O H ASN GLU 16 19 1.55 5 A A O H PHE ASN 111 115 1.59 6 A A O H PHE ASN 111 115 1.53 7 A A O H PHE ASN 111 115 1.53 7 A A O H ASN GLU 16 19 1.60 8 A A O H PHE ASN 111 115 1.45 8 A A O H ASN GLU 16 19 1.59 9 A A O H PHE ASN 111 115 1.58 9 A A O H ASN GLU 16 19 1.60 10 A A O H PHE ASN 111 115 1.56 10 A A O H ASN GLU 16 19 1.58 1 A SER 5 -173.72 -75.75 1 A LYS 56 -155.22 11.26 1 A SER 57 -109.81 -102.66 1 A PHE 59 -152.37 21.83 1 A ARG 62 -125.78 -142.36 1 A PRO 96 -44.09 -176.24 1 A ARG 103 -106.01 52.47 1 A PHE 111 -65.17 -77.62 1 A ALA 120 -62.94 98.75 2 A PRO 2 -52.19 175.93 2 A LEU 3 -154.65 -52.61 2 A LYS 56 -146.03 -43.38 2 A SER 57 -61.09 -149.99 2 A ARG 62 -85.03 -145.63 2 A LYS 86 -163.16 119.03 2 A PRO 89 -55.03 177.93 2 A ALA 90 -95.79 54.38 2 A PRO 96 -39.82 172.62 2 A SER 102 -159.86 -40.45 2 A PHE 111 -65.49 -77.47 3 A GLU 6 -178.81 111.71 3 A LYS 56 -143.13 -45.01 3 A SER 57 -59.95 -153.10 3 A ARG 62 -121.64 -147.06 3 A VAL 63 -48.86 107.45 3 A GLU 78 -66.78 95.69 3 A PRO 83 -71.52 -168.00 3 A PRO 89 -51.74 175.52 3 A ALA 90 -102.51 53.04 3 A ALA 92 -102.21 -81.14 3 A GLN 95 -144.31 57.47 3 A PRO 96 -44.77 177.05 3 A ARG 103 -106.17 51.53 3 A PHE 111 -64.03 -75.93 4 A LEU 3 61.93 116.29 4 A GLU 6 -170.95 -173.74 4 A LYS 56 -139.80 -42.40 4 A SER 57 -57.36 -159.89 4 A ARG 62 -82.75 -143.66 4 A PRO 89 -56.38 177.83 4 A ALA 90 -95.17 54.11 4 A PRO 96 -39.03 175.06 4 A SER 102 179.83 106.56 4 A ARG 103 -69.00 54.51 4 A PHE 111 -64.74 -77.39 5 A VAL 11 -67.09 92.48 5 A GLU 19 -121.00 -53.75 5 A LYS 56 -145.51 -42.49 5 A SER 57 -57.69 -156.12 5 A GLU 58 -79.33 23.77 5 A PHE 59 -149.05 26.23 5 A ARG 62 -85.28 -142.61 5 A ASP 74 -50.35 102.18 5 A PHE 82 174.60 140.93 5 A PRO 83 -74.69 -161.17 5 A PRO 89 -55.60 176.79 5 A ALA 90 -94.57 53.75 5 A PRO 96 -41.89 -173.20 5 A PHE 111 -65.30 -78.26 6 A PRO 2 -69.98 63.13 6 A SER 5 -74.74 -168.29 6 A LYS 56 -140.82 -40.60 6 A SER 57 -57.16 -160.63 6 A ARG 62 -113.38 -141.33 6 A PRO 83 -79.60 -164.64 6 A ALA 90 -94.62 53.33 6 A ALA 92 -101.57 -78.45 6 A GLN 95 -149.82 59.34 6 A PRO 96 -42.99 -175.96 6 A PHE 111 -66.00 -77.30 7 A TYR 33 -161.19 -167.71 7 A LYS 56 -149.35 -43.20 7 A SER 57 -60.71 -151.43 7 A GLU 58 -79.45 20.38 7 A ARG 62 -81.89 -136.12 7 A VAL 63 -46.22 152.65 7 A PRO 89 -56.73 177.02 7 A ALA 90 -95.56 53.74 7 A PRO 96 -42.22 176.41 7 A ARG 103 47.65 27.24 7 A PHE 111 -65.23 -77.98 8 A SER 5 -117.11 -80.25 8 A GLU 6 177.57 44.13 8 A VAL 9 -62.60 -176.37 8 A VAL 11 -63.07 84.57 8 A LYS 56 -146.39 -42.35 8 A SER 57 -60.41 -147.12 8 A PHE 59 -140.07 17.14 8 A ARG 62 -115.21 -143.23 8 A PRO 83 -73.73 -168.94 8 A PRO 89 -57.43 177.32 8 A ALA 90 -96.60 53.88 8 A PRO 96 -46.38 -179.70 8 A SER 102 -153.43 -41.04 8 A PHE 111 -65.25 -78.40 9 A CYS 37 -68.09 96.24 9 A LYS 56 -149.77 -43.69 9 A SER 57 -61.80 -146.91 9 A ARG 62 -85.07 -145.87 9 A THR 71 -160.93 -21.35 9 A ASN 73 -113.98 -157.01 9 A PRO 89 -55.55 179.41 9 A ALA 90 -96.77 53.82 9 A PRO 96 -40.82 175.36 9 A SER 102 -177.53 111.64 9 A PHE 111 -65.11 -77.71 10 A SER 5 -176.08 -58.12 10 A GLU 6 61.42 110.87 10 A THR 10 -61.61 82.05 10 A LYS 56 -143.41 -43.50 10 A SER 57 -59.20 -150.14 10 A ARG 62 -84.56 -145.65 10 A ALA 90 -90.83 55.19 10 A PRO 96 -39.93 -179.14 10 A SER 102 -158.32 -35.77 10 A ARG 103 70.45 40.77 10 A PHE 111 -66.05 -78.70 Solution structure of the a' domain of thermophilic fungal protein disulfide isomerase 1 N N A HIS 39 A HIS 39 HELX_P A ALA 55 A ALA 55 1 1 17 A THR 104 A THR 104 HELX_P A ASN 115 A ASN 115 1 2 12 ISOMERASE thioredoxin fold, ISOMERASE A PHE 82 A PHE 82 1 A PRO 83 A PRO 83 -0.18 A PHE 82 A PHE 82 2 A PRO 83 A PRO 83 -0.02 A PHE 82 A PHE 82 3 A PRO 83 A PRO 83 0.29 A PHE 82 A PHE 82 4 A PRO 83 A PRO 83 0.12 A PHE 82 A PHE 82 5 A PRO 83 A PRO 83 -0.04 A PHE 82 A PHE 82 6 A PRO 83 A PRO 83 -0.20 A PHE 82 A PHE 82 7 A PRO 83 A PRO 83 0.02 A PHE 82 A PHE 82 8 A PRO 83 A PRO 83 0.21 A PHE 82 A PHE 82 9 A PRO 83 A PRO 83 0.14 A PHE 82 A PHE 82 10 A PRO 83 A PRO 83 0.15 PDI_HUMIN UNP 1 354 P55059 EGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQGFPTI KLYPAGAKGQPVTYSGSRTVEDLIKFIAENGKYKAA 354 469 2DJJ 6 121 P55059 A 1 6 121 1 cloning artifact GLY 1 2DJJ A P55059 UNP 1 1 cloning artifact PRO 2 2DJJ A P55059 UNP 2 1 cloning artifact LEU 3 2DJJ A P55059 UNP 3 1 cloning artifact GLY 4 2DJJ A P55059 UNP 4 1 cloning artifact SER 5 2DJJ A P55059 UNP 5 4 parallel parallel anti-parallel A THR 10 A THR 10 A VAL 11 A VAL 11 A VAL 64 A VAL 64 A ASP 69 A ASP 69 A VAL 28 A VAL 28 A TYR 33 A TYR 33 A THR 84 A THR 84 A TYR 88 A TYR 88