data_2DLJ # _entry.id 2DLJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DLJ pdb_00002dlj 10.2210/pdb2dlj/pdb NDB AD0063 ? ? RCSB RCSB025555 ? ? WWPDB D_1000025555 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-05-23 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_dist_value' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 6 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 7 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 9 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 10 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 11 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 12 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' # _pdbx_database_status.entry_id 2DLJ _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2006-04-19 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1Z7I ;2'-Me-Se Derivitation of A-DNA Octamer G(UMSe)GTACAC ; unspecified PDB 2GPX ;2'-Me-Se and Br Derivitation of A-DNA Octamer G(UMS)G(BRU)ACAC ; unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Jiang, J.' 1 'Huang, Z.' 2 # _citation.id primary _citation.title 'Selenium derivatization of nucleic acids for crystallography.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 35 _citation.page_first 477 _citation.page_last 485 _citation.year 2007 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17169989 _citation.pdbx_database_id_DOI 10.1093/nar/gkl1070 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jiang, J.' 1 ? primary 'Sheng, J.' 2 ? primary 'Carrasco, N.' 3 ? primary 'Huang, Z.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*(UMS)P*GP*(BRU)P*AP*CP*AP*C)-3'" 2570.447 1 ? ? ? ? 2 water nat water 18.015 45 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DG)(UMS)(DG)(BRU)(DA)(DC)(DA)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GUGUACAC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 UMS n 1 3 DG n 1 4 BRU n 1 5 DA n 1 6 DC n 1 7 DA n 1 8 DC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Solid Phase Synthesis via Phosphoramidite Chemistry' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BRU 'DNA linking' n "5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O8 P' 387.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 UMS 'DNA linking' n "2'-METHYLSELENYL-2'-DEOXYURIDINE-5'-PHOSPHATE" ? 'C10 H15 N2 O8 P Se' 401.168 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 UMS 2 2 2 UMS UMS A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 BRU 4 4 4 BRU BRU A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DC 6 6 6 DC C A . n A 1 7 DA 7 7 7 DA A A . n A 1 8 DC 8 8 8 DC C A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 9 1 HOH HOH A . B 2 HOH 2 10 2 HOH HOH A . B 2 HOH 3 11 3 HOH HOH A . B 2 HOH 4 12 4 HOH HOH A . B 2 HOH 5 13 5 HOH HOH A . B 2 HOH 6 14 6 HOH HOH A . B 2 HOH 7 15 7 HOH HOH A . B 2 HOH 8 16 8 HOH HOH A . B 2 HOH 9 17 9 HOH HOH A . B 2 HOH 10 18 10 HOH HOH A . B 2 HOH 11 19 11 HOH HOH A . B 2 HOH 12 20 12 HOH HOH A . B 2 HOH 13 21 13 HOH HOH A . B 2 HOH 14 22 14 HOH HOH A . B 2 HOH 15 23 15 HOH HOH A . B 2 HOH 16 24 16 HOH HOH A . B 2 HOH 17 25 17 HOH HOH A . B 2 HOH 18 26 18 HOH HOH A . B 2 HOH 19 27 19 HOH HOH A . B 2 HOH 20 28 20 HOH HOH A . B 2 HOH 21 29 21 HOH HOH A . B 2 HOH 22 30 22 HOH HOH A . B 2 HOH 23 31 23 HOH HOH A . B 2 HOH 24 32 24 HOH HOH A . B 2 HOH 25 33 25 HOH HOH A . B 2 HOH 26 34 26 HOH HOH A . B 2 HOH 27 35 27 HOH HOH A . B 2 HOH 28 36 28 HOH HOH A . B 2 HOH 29 37 29 HOH HOH A . B 2 HOH 30 38 30 HOH HOH A . B 2 HOH 31 39 31 HOH HOH A . B 2 HOH 32 40 32 HOH HOH A . B 2 HOH 33 41 33 HOH HOH A . B 2 HOH 34 42 34 HOH HOH A . B 2 HOH 35 43 35 HOH HOH A . B 2 HOH 36 44 36 HOH HOH A . B 2 HOH 37 45 37 HOH HOH A . B 2 HOH 38 46 38 HOH HOH A . B 2 HOH 39 47 39 HOH HOH A . B 2 HOH 40 48 40 HOH HOH A . B 2 HOH 41 49 41 HOH HOH A . B 2 HOH 42 50 42 HOH HOH A . B 2 HOH 43 51 43 HOH HOH A . B 2 HOH 44 52 44 HOH HOH A . B 2 HOH 45 53 45 HOH HOH A . # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal CNS . ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns.csb.yale.edu/v1.1/ Fortran_77 ? 1 PDB_EXTRACT 1.701 'Nov. 1, 2005' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 2 CBASS . ? ? ? ? 'data collection' ? ? ? 3 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 4 SOLVE . ? ? ? ? phasing ? ? ? 5 # _cell.length_a 42.369 _cell.length_b 42.369 _cell.length_c 23.744 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.entry_id 2DLJ _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.entry_id 2DLJ _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 96 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # _exptl.entry_id 2DLJ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.00 _exptl_crystal.density_percent_sol 38.44 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.00 _exptl_crystal_grow.pdbx_details ;10% v/v MPD 40mM Sodium Cacodylate, 12mM Spermine tetra-HCI, 80 mM sodium Chloride/12mM Potassium Chloride, 20 mM Magnesium Chloride, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K, pH 6.00 ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100.0 ? 1 2 ? ? 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2005-03-13 _diffrn_detector.details ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 2 1 M ? 'SINGLE WAVELENGTH' x-ray 1 1 M ? 'SINGLE WAVELENGTH' x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.1 1.0 2 0.9196 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X29A' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X29A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '1.1, 0.9196' # _reflns.entry_id 2DLJ _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 18.610 _reflns.d_resolution_high 1.500 _reflns.number_obs 3777 _reflns.number_all ? _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs 0.051 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 7.8000 _reflns.B_iso_Wilson_estimate 18.00 _reflns.pdbx_redundancy 12.300 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 2,1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.50 _reflns_shell.d_res_low 1.55 _reflns_shell.percent_possible_all 99.2 _reflns_shell.Rmerge_I_obs 0.278 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.500 _reflns_shell.pdbx_redundancy 9.10 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2DLJ _refine.ls_number_reflns_obs 3597 _refine.ls_number_reflns_all 3597 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 18.61 _refine.ls_d_res_high 1.50 _refine.ls_percent_reflns_obs 95.8 _refine.ls_R_factor_obs 0.174 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.174 _refine.ls_R_factor_R_free 0.22 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.600 _refine.ls_number_reflns_R_free 359 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 18.87 _refine.aniso_B[1][1] 0.27200 _refine.aniso_B[2][2] 0.27200 _refine.aniso_B[3][3] -0.54300 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.32 _refine.solvent_model_param_bsol 34.92 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 2 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2DLJ _refine_analyze.Luzzati_coordinate_error_obs 0.15 _refine_analyze.Luzzati_sigma_a_obs 0.05 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.18 _refine_analyze.Luzzati_sigma_a_free 0.07 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 162 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 45 _refine_hist.number_atoms_total 207 _refine_hist.d_res_high 1.50 _refine_hist.d_res_low 18.61 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.011 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.62 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.192 1.500 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 1.920 2.000 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 1.523 2.000 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 2.075 2.500 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 1.50 _refine_ls_shell.d_res_low 1.59 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.192 _refine_ls_shell.percent_reflns_obs 11.10 _refine_ls_shell.R_factor_R_free 0.225 _refine_ls_shell.R_factor_R_free_error 0.029 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 59 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM DNA-RNA.TOP 'X-RAY DIFFRACTION' 3 ION.PARAM WATER.TOP 'X-RAY DIFFRACTION' 4 DNA-RNA_UMS.PAR ION.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 2DLJ _struct.title ;2'-Me-Se and Br Derivitation of A-DNA Octamer G(UMS)G(BRU)ACAC ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DLJ _struct_keywords.pdbx_keywords DNA _struct_keywords.text ;2'-Methylseleno-uridine, Se-DNA, Se-Br-DNA, Selenium Derivatization, DNA ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2DLJ _struct_ref.pdbx_db_accession 2DLJ _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DLJ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 8 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2DLJ _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 8 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 1 "O3'" ? ? ? 1_555 A UMS 2 P ? ? A DG 1 A UMS 2 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale2 covale both ? A UMS 2 "O3'" ? ? ? 1_555 A DG 3 P ? ? A UMS 2 A DG 3 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale3 covale both ? A DG 3 "O3'" ? ? ? 1_555 A BRU 4 P ? ? A DG 3 A BRU 4 1_555 ? ? ? ? ? ? ? 1.601 ? ? covale4 covale both ? A BRU 4 "O3'" ? ? ? 1_555 A DA 5 P ? ? A BRU 4 A DA 5 1_555 ? ? ? ? ? ? ? 1.590 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A UMS 2 N3 ? ? ? 1_555 A DA 7 N1 ? ? A UMS 2 A DA 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A UMS 2 O4 ? ? ? 1_555 A DA 7 N6 ? ? A UMS 2 A DA 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 6 N3 ? ? A DG 3 A DC 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 6 O2 ? ? A DG 3 A DC 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 6 N4 ? ? A DG 3 A DC 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A BRU 4 N3 ? ? ? 1_555 A DA 5 N1 ? ? A BRU 4 A DA 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A BRU 4 O4 ? ? ? 1_555 A DA 5 N6 ? ? A BRU 4 A DA 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 5 N1 ? ? ? 1_555 A BRU 4 N3 ? ? A DA 5 A BRU 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N6 ? ? ? 1_555 A BRU 4 O4 ? ? A DA 5 A BRU 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 6 N3 ? ? ? 1_555 A DG 3 N1 ? ? A DC 6 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N4 ? ? ? 1_555 A DG 3 O6 ? ? A DC 6 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 O2 ? ? ? 1_555 A DG 3 N2 ? ? A DC 6 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 7 N1 ? ? ? 1_555 A UMS 2 N3 ? ? A DA 7 A UMS 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 7 N6 ? ? ? 1_555 A UMS 2 O4 ? ? A DA 7 A UMS 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 C5 _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 DC _pdbx_validate_rmsd_bond.auth_seq_id_1 6 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 C6 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 DC _pdbx_validate_rmsd_bond.auth_seq_id_2 6 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.389 _pdbx_validate_rmsd_bond.bond_target_value 1.339 _pdbx_validate_rmsd_bond.bond_deviation 0.050 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.008 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 100.50 108.00 -7.50 0.70 N 2 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 101.25 108.00 -6.75 0.70 N # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id DC _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 8 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.065 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A UMS 2 A UMS 2 ? DU ? 2 A BRU 4 A BRU 4 ? DU ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BRU N1 N N N 1 BRU C2 C N N 2 BRU N3 N N N 3 BRU C4 C N N 4 BRU C5 C N N 5 BRU C6 C N N 6 BRU O2 O N N 7 BRU O4 O N N 8 BRU BR BR N N 9 BRU "C1'" C N R 10 BRU "C2'" C N N 11 BRU "C3'" C N S 12 BRU "C4'" C N R 13 BRU "O3'" O N N 14 BRU "O4'" O N N 15 BRU "C5'" C N N 16 BRU "O5'" O N N 17 BRU P P N N 18 BRU OP1 O N N 19 BRU OP2 O N N 20 BRU OP3 O N N 21 BRU HN3 H N N 22 BRU H6 H N N 23 BRU "H1'" H N N 24 BRU "H2'" H N N 25 BRU "H2''" H N N 26 BRU "H3'" H N N 27 BRU "H4'" H N N 28 BRU "HO3'" H N N 29 BRU "H5'" H N N 30 BRU "H5''" H N N 31 BRU HOP2 H N N 32 BRU HOP3 H N N 33 DA OP3 O N N 34 DA P P N N 35 DA OP1 O N N 36 DA OP2 O N N 37 DA "O5'" O N N 38 DA "C5'" C N N 39 DA "C4'" C N R 40 DA "O4'" O N N 41 DA "C3'" C N S 42 DA "O3'" O N N 43 DA "C2'" C N N 44 DA "C1'" C N R 45 DA N9 N Y N 46 DA C8 C Y N 47 DA N7 N Y N 48 DA C5 C Y N 49 DA C6 C Y N 50 DA N6 N N N 51 DA N1 N Y N 52 DA C2 C Y N 53 DA N3 N Y N 54 DA C4 C Y N 55 DA HOP3 H N N 56 DA HOP2 H N N 57 DA "H5'" H N N 58 DA "H5''" H N N 59 DA "H4'" H N N 60 DA "H3'" H N N 61 DA "HO3'" H N N 62 DA "H2'" H N N 63 DA "H2''" H N N 64 DA "H1'" H N N 65 DA H8 H N N 66 DA H61 H N N 67 DA H62 H N N 68 DA H2 H N N 69 DC OP3 O N N 70 DC P P N N 71 DC OP1 O N N 72 DC OP2 O N N 73 DC "O5'" O N N 74 DC "C5'" C N N 75 DC "C4'" C N R 76 DC "O4'" O N N 77 DC "C3'" C N S 78 DC "O3'" O N N 79 DC "C2'" C N N 80 DC "C1'" C N R 81 DC N1 N N N 82 DC C2 C N N 83 DC O2 O N N 84 DC N3 N N N 85 DC C4 C N N 86 DC N4 N N N 87 DC C5 C N N 88 DC C6 C N N 89 DC HOP3 H N N 90 DC HOP2 H N N 91 DC "H5'" H N N 92 DC "H5''" H N N 93 DC "H4'" H N N 94 DC "H3'" H N N 95 DC "HO3'" H N N 96 DC "H2'" H N N 97 DC "H2''" H N N 98 DC "H1'" H N N 99 DC H41 H N N 100 DC H42 H N N 101 DC H5 H N N 102 DC H6 H N N 103 DG OP3 O N N 104 DG P P N N 105 DG OP1 O N N 106 DG OP2 O N N 107 DG "O5'" O N N 108 DG "C5'" C N N 109 DG "C4'" C N R 110 DG "O4'" O N N 111 DG "C3'" C N S 112 DG "O3'" O N N 113 DG "C2'" C N N 114 DG "C1'" C N R 115 DG N9 N Y N 116 DG C8 C Y N 117 DG N7 N Y N 118 DG C5 C Y N 119 DG C6 C N N 120 DG O6 O N N 121 DG N1 N N N 122 DG C2 C N N 123 DG N2 N N N 124 DG N3 N N N 125 DG C4 C Y N 126 DG HOP3 H N N 127 DG HOP2 H N N 128 DG "H5'" H N N 129 DG "H5''" H N N 130 DG "H4'" H N N 131 DG "H3'" H N N 132 DG "HO3'" H N N 133 DG "H2'" H N N 134 DG "H2''" H N N 135 DG "H1'" H N N 136 DG H8 H N N 137 DG H1 H N N 138 DG H21 H N N 139 DG H22 H N N 140 HOH O O N N 141 HOH H1 H N N 142 HOH H2 H N N 143 UMS OP3 O N N 144 UMS P P N N 145 UMS OP1 O N N 146 UMS OP2 O N N 147 UMS "O5'" O N N 148 UMS "C5'" C N N 149 UMS "C4'" C N R 150 UMS "O4'" O N N 151 UMS "C3'" C N R 152 UMS "O3'" O N N 153 UMS "C2'" C N R 154 UMS "SE2'" SE N N 155 UMS "C1'" C N R 156 UMS "CA'" C N N 157 UMS N1 N N N 158 UMS C2 C N N 159 UMS O2 O N N 160 UMS N3 N N N 161 UMS C4 C N N 162 UMS O4 O N N 163 UMS C5 C N N 164 UMS C6 C N N 165 UMS HOP3 H N N 166 UMS HOP2 H N N 167 UMS "H5'" H N N 168 UMS "H5'2" H N N 169 UMS "H4'" H N N 170 UMS "H3'" H N N 171 UMS "HO3'" H N N 172 UMS "H2'" H N N 173 UMS "H1'" H N N 174 UMS "HA'" H N N 175 UMS "HA'2" H N N 176 UMS "HA'3" H N N 177 UMS H3 H N N 178 UMS H5 H N N 179 UMS H6 H N N 180 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BRU N1 C2 sing N N 1 BRU N1 C6 sing N N 2 BRU N1 "C1'" sing N N 3 BRU C2 N3 sing N N 4 BRU C2 O2 doub N N 5 BRU N3 C4 sing N N 6 BRU N3 HN3 sing N N 7 BRU C4 C5 sing N N 8 BRU C4 O4 doub N N 9 BRU C5 C6 doub N N 10 BRU C5 BR sing N N 11 BRU C6 H6 sing N N 12 BRU "C1'" "C2'" sing N N 13 BRU "C1'" "O4'" sing N N 14 BRU "C1'" "H1'" sing N N 15 BRU "C2'" "C3'" sing N N 16 BRU "C2'" "H2'" sing N N 17 BRU "C2'" "H2''" sing N N 18 BRU "C3'" "C4'" sing N N 19 BRU "C3'" "O3'" sing N N 20 BRU "C3'" "H3'" sing N N 21 BRU "C4'" "O4'" sing N N 22 BRU "C4'" "C5'" sing N N 23 BRU "C4'" "H4'" sing N N 24 BRU "O3'" "HO3'" sing N N 25 BRU "C5'" "O5'" sing N N 26 BRU "C5'" "H5'" sing N N 27 BRU "C5'" "H5''" sing N N 28 BRU "O5'" P sing N N 29 BRU P OP1 doub N N 30 BRU P OP2 sing N N 31 BRU P OP3 sing N N 32 BRU OP2 HOP2 sing N N 33 BRU OP3 HOP3 sing N N 34 DA OP3 P sing N N 35 DA OP3 HOP3 sing N N 36 DA P OP1 doub N N 37 DA P OP2 sing N N 38 DA P "O5'" sing N N 39 DA OP2 HOP2 sing N N 40 DA "O5'" "C5'" sing N N 41 DA "C5'" "C4'" sing N N 42 DA "C5'" "H5'" sing N N 43 DA "C5'" "H5''" sing N N 44 DA "C4'" "O4'" sing N N 45 DA "C4'" "C3'" sing N N 46 DA "C4'" "H4'" sing N N 47 DA "O4'" "C1'" sing N N 48 DA "C3'" "O3'" sing N N 49 DA "C3'" "C2'" sing N N 50 DA "C3'" "H3'" sing N N 51 DA "O3'" "HO3'" sing N N 52 DA "C2'" "C1'" sing N N 53 DA "C2'" "H2'" sing N N 54 DA "C2'" "H2''" sing N N 55 DA "C1'" N9 sing N N 56 DA "C1'" "H1'" sing N N 57 DA N9 C8 sing Y N 58 DA N9 C4 sing Y N 59 DA C8 N7 doub Y N 60 DA C8 H8 sing N N 61 DA N7 C5 sing Y N 62 DA C5 C6 sing Y N 63 DA C5 C4 doub Y N 64 DA C6 N6 sing N N 65 DA C6 N1 doub Y N 66 DA N6 H61 sing N N 67 DA N6 H62 sing N N 68 DA N1 C2 sing Y N 69 DA C2 N3 doub Y N 70 DA C2 H2 sing N N 71 DA N3 C4 sing Y N 72 DC OP3 P sing N N 73 DC OP3 HOP3 sing N N 74 DC P OP1 doub N N 75 DC P OP2 sing N N 76 DC P "O5'" sing N N 77 DC OP2 HOP2 sing N N 78 DC "O5'" "C5'" sing N N 79 DC "C5'" "C4'" sing N N 80 DC "C5'" "H5'" sing N N 81 DC "C5'" "H5''" sing N N 82 DC "C4'" "O4'" sing N N 83 DC "C4'" "C3'" sing N N 84 DC "C4'" "H4'" sing N N 85 DC "O4'" "C1'" sing N N 86 DC "C3'" "O3'" sing N N 87 DC "C3'" "C2'" sing N N 88 DC "C3'" "H3'" sing N N 89 DC "O3'" "HO3'" sing N N 90 DC "C2'" "C1'" sing N N 91 DC "C2'" "H2'" sing N N 92 DC "C2'" "H2''" sing N N 93 DC "C1'" N1 sing N N 94 DC "C1'" "H1'" sing N N 95 DC N1 C2 sing N N 96 DC N1 C6 sing N N 97 DC C2 O2 doub N N 98 DC C2 N3 sing N N 99 DC N3 C4 doub N N 100 DC C4 N4 sing N N 101 DC C4 C5 sing N N 102 DC N4 H41 sing N N 103 DC N4 H42 sing N N 104 DC C5 C6 doub N N 105 DC C5 H5 sing N N 106 DC C6 H6 sing N N 107 DG OP3 P sing N N 108 DG OP3 HOP3 sing N N 109 DG P OP1 doub N N 110 DG P OP2 sing N N 111 DG P "O5'" sing N N 112 DG OP2 HOP2 sing N N 113 DG "O5'" "C5'" sing N N 114 DG "C5'" "C4'" sing N N 115 DG "C5'" "H5'" sing N N 116 DG "C5'" "H5''" sing N N 117 DG "C4'" "O4'" sing N N 118 DG "C4'" "C3'" sing N N 119 DG "C4'" "H4'" sing N N 120 DG "O4'" "C1'" sing N N 121 DG "C3'" "O3'" sing N N 122 DG "C3'" "C2'" sing N N 123 DG "C3'" "H3'" sing N N 124 DG "O3'" "HO3'" sing N N 125 DG "C2'" "C1'" sing N N 126 DG "C2'" "H2'" sing N N 127 DG "C2'" "H2''" sing N N 128 DG "C1'" N9 sing N N 129 DG "C1'" "H1'" sing N N 130 DG N9 C8 sing Y N 131 DG N9 C4 sing Y N 132 DG C8 N7 doub Y N 133 DG C8 H8 sing N N 134 DG N7 C5 sing Y N 135 DG C5 C6 sing N N 136 DG C5 C4 doub Y N 137 DG C6 O6 doub N N 138 DG C6 N1 sing N N 139 DG N1 C2 sing N N 140 DG N1 H1 sing N N 141 DG C2 N2 sing N N 142 DG C2 N3 doub N N 143 DG N2 H21 sing N N 144 DG N2 H22 sing N N 145 DG N3 C4 sing N N 146 HOH O H1 sing N N 147 HOH O H2 sing N N 148 UMS OP3 P sing N N 149 UMS OP3 HOP3 sing N N 150 UMS P OP1 doub N N 151 UMS P OP2 sing N N 152 UMS P "O5'" sing N N 153 UMS OP2 HOP2 sing N N 154 UMS "O5'" "C5'" sing N N 155 UMS "C5'" "C4'" sing N N 156 UMS "C5'" "H5'" sing N N 157 UMS "C5'" "H5'2" sing N N 158 UMS "C4'" "O4'" sing N N 159 UMS "C4'" "C3'" sing N N 160 UMS "C4'" "H4'" sing N N 161 UMS "O4'" "C1'" sing N N 162 UMS "C3'" "O3'" sing N N 163 UMS "C3'" "C2'" sing N N 164 UMS "C3'" "H3'" sing N N 165 UMS "O3'" "HO3'" sing N N 166 UMS "C2'" "SE2'" sing N N 167 UMS "C2'" "C1'" sing N N 168 UMS "C2'" "H2'" sing N N 169 UMS "SE2'" "CA'" sing N N 170 UMS "C1'" N1 sing N N 171 UMS "C1'" "H1'" sing N N 172 UMS "CA'" "HA'" sing N N 173 UMS "CA'" "HA'2" sing N N 174 UMS "CA'" "HA'3" sing N N 175 UMS N1 C2 sing N N 176 UMS N1 C6 sing N N 177 UMS C2 O2 doub N N 178 UMS C2 N3 sing N N 179 UMS N3 C4 sing N N 180 UMS N3 H3 sing N N 181 UMS C4 O4 doub N N 182 UMS C4 C5 sing N N 183 UMS C5 C6 doub N N 184 UMS C5 H5 sing N N 185 UMS C6 H6 sing N N 186 # _ndb_struct_conf_na.entry_id 2DLJ _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 A DC 8 7_555 -0.283 -0.096 -0.257 -18.640 -12.382 -1.192 1 A_DG1:DC8_A A 1 ? A 8 ? 19 1 1 A UMS 2 1_555 A DA 7 7_555 -0.063 -0.048 0.179 -7.930 -10.290 2.296 2 A_UMS2:DA7_A A 2 ? A 7 ? 20 1 1 A DG 3 1_555 A DC 6 7_555 -0.251 -0.141 0.262 -2.919 -14.186 0.900 3 A_DG3:DC6_A A 3 ? A 6 ? 19 1 1 A BRU 4 1_555 A DA 5 7_555 -0.070 -0.110 0.250 -3.038 -12.453 -3.932 4 A_BRU4:DA5_A A 4 ? A 5 ? 20 1 1 A DA 5 1_555 A BRU 4 7_555 0.070 -0.110 0.250 3.038 -12.453 -3.932 5 A_DA5:BRU4_A A 5 ? A 4 ? 20 1 1 A DC 6 1_555 A DG 3 7_555 0.251 -0.141 0.262 2.919 -14.186 0.900 6 A_DC6:DG3_A A 6 ? A 3 ? 19 1 1 A DA 7 1_555 A UMS 2 7_555 0.063 -0.048 0.179 7.930 -10.290 2.296 7 A_DA7:UMS2_A A 7 ? A 2 ? 20 1 1 A DC 8 1_555 A DG 1 7_555 0.283 -0.096 -0.257 18.640 -12.382 -1.192 8 A_DC8:DG1_A A 8 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 A DC 8 7_555 A UMS 2 1_555 A DA 7 7_555 0.461 -0.894 3.141 -1.698 13.616 30.076 -3.661 -1.072 2.486 24.687 3.079 32.992 1 AA_DG1UMS2:DA7DC8_AA A 1 ? A 8 ? A 2 ? A 7 ? 1 A UMS 2 1_555 A DA 7 7_555 A DG 3 1_555 A DC 6 7_555 0.701 -1.490 2.992 0.971 13.167 28.328 -4.831 -1.151 2.128 25.243 -1.861 31.196 2 AA_UMS2DG3:DC6DA7_AA A 2 ? A 7 ? A 3 ? A 6 ? 1 A DG 3 1_555 A DC 6 7_555 A BRU 4 1_555 A DA 5 7_555 -0.411 -1.510 3.269 0.694 1.425 36.640 -2.592 0.748 3.202 2.265 -1.103 36.673 3 AA_DG3BRU4:DA5DC6_AA A 3 ? A 6 ? A 4 ? A 5 ? 1 A BRU 4 1_555 A DA 5 7_555 A DA 5 1_555 A BRU 4 7_555 0.000 -1.435 3.012 0.000 6.487 29.575 -3.896 0.000 2.644 12.518 0.000 30.263 4 AA_BRU4DA5:BRU4DA5_AA A 4 ? A 5 ? A 5 ? A 4 ? 1 A DA 5 1_555 A BRU 4 7_555 A DC 6 1_555 A DG 3 7_555 0.411 -1.510 3.269 -0.694 1.425 36.640 -2.592 -0.748 3.202 2.266 1.103 36.673 5 AA_DA5DC6:DG3BRU4_AA A 5 ? A 4 ? A 6 ? A 3 ? 1 A DC 6 1_555 A DG 3 7_555 A DA 7 1_555 A UMS 2 7_555 -0.701 -1.490 2.992 -0.971 13.167 28.328 -4.831 1.151 2.128 25.243 1.861 31.196 6 AA_DC6DA7:UMS2DG3_AA A 6 ? A 3 ? A 7 ? A 2 ? 1 A DA 7 1_555 A UMS 2 7_555 A DC 8 1_555 A DG 1 7_555 -0.461 -0.894 3.141 1.698 13.616 30.076 -3.661 1.072 2.486 24.687 -3.079 32.992 7 AA_DA7DC8:DG1UMS2_AA A 7 ? A 2 ? A 8 ? A 1 ? # _atom_sites.entry_id 2DLJ _atom_sites.fract_transf_matrix[1][1] 0.023602 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023602 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.042116 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C N O P SE # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DG A 1 1 ? 23.237 13.715 5.293 1.00 16.52 ? 1 DG A "O5'" 1 ATOM 2 C "C5'" . DG A 1 1 ? 24.648 13.748 5.138 1.00 16.87 ? 1 DG A "C5'" 1 ATOM 3 C "C4'" . DG A 1 1 ? 25.227 12.604 4.341 1.00 14.95 ? 1 DG A "C4'" 1 ATOM 4 O "O4'" . DG A 1 1 ? 25.028 11.394 5.125 1.00 14.78 ? 1 DG A "O4'" 1 ATOM 5 C "C3'" . DG A 1 1 ? 24.529 12.299 3.017 1.00 15.56 ? 1 DG A "C3'" 1 ATOM 6 O "O3'" . DG A 1 1 ? 25.081 13.021 1.911 1.00 16.04 ? 1 DG A "O3'" 1 ATOM 7 C "C2'" . DG A 1 1 ? 24.744 10.798 2.852 1.00 14.11 ? 1 DG A "C2'" 1 ATOM 8 C "C1'" . DG A 1 1 ? 24.856 10.258 4.269 1.00 13.93 ? 1 DG A "C1'" 1 ATOM 9 N N9 . DG A 1 1 ? 23.489 9.855 4.630 1.00 14.06 ? 1 DG A N9 1 ATOM 10 C C8 . DG A 1 1 ? 22.519 10.600 5.276 1.00 14.71 ? 1 DG A C8 1 ATOM 11 N N7 . DG A 1 1 ? 21.373 9.966 5.393 1.00 15.00 ? 1 DG A N7 1 ATOM 12 C C5 . DG A 1 1 ? 21.604 8.729 4.802 1.00 13.59 ? 1 DG A C5 1 ATOM 13 C C6 . DG A 1 1 ? 20.718 7.565 4.629 1.00 12.69 ? 1 DG A C6 1 ATOM 14 O O6 . DG A 1 1 ? 19.544 7.429 5.012 1.00 16.04 ? 1 DG A O6 1 ATOM 15 N N1 . DG A 1 1 ? 21.379 6.523 3.976 1.00 13.25 ? 1 DG A N1 1 ATOM 16 C C2 . DG A 1 1 ? 22.684 6.562 3.548 1.00 14.86 ? 1 DG A C2 1 ATOM 17 N N2 . DG A 1 1 ? 23.150 5.457 2.943 1.00 16.78 ? 1 DG A N2 1 ATOM 18 N N3 . DG A 1 1 ? 23.496 7.610 3.696 1.00 15.68 ? 1 DG A N3 1 ATOM 19 C C4 . DG A 1 1 ? 22.900 8.640 4.328 1.00 14.60 ? 1 DG A C4 1 HETATM 20 P P . UMS A 1 2 ? 24.103 13.518 0.729 1.00 15.73 ? 2 UMS A P 1 HETATM 21 O OP1 . UMS A 1 2 ? 24.916 14.399 -0.187 1.00 18.00 ? 2 UMS A OP1 1 HETATM 22 O OP2 . UMS A 1 2 ? 22.796 13.989 1.277 1.00 17.97 ? 2 UMS A OP2 1 HETATM 23 O "O5'" . UMS A 1 2 ? 23.805 12.204 -0.109 1.00 15.52 ? 2 UMS A "O5'" 1 HETATM 24 C "C5'" . UMS A 1 2 ? 24.865 11.519 -0.707 1.00 15.72 ? 2 UMS A "C5'" 1 HETATM 25 C "C4'" . UMS A 1 2 ? 24.401 10.204 -1.270 1.00 16.47 ? 2 UMS A "C4'" 1 HETATM 26 O "O4'" . UMS A 1 2 ? 23.951 9.389 -0.149 1.00 14.32 ? 2 UMS A "O4'" 1 HETATM 27 C "C3'" . UMS A 1 2 ? 23.206 10.253 -2.218 1.00 17.90 ? 2 UMS A "C3'" 1 HETATM 28 O "O3'" . UMS A 1 2 ? 23.684 10.419 -3.544 1.00 21.33 ? 2 UMS A "O3'" 1 HETATM 29 C "C2'" . UMS A 1 2 ? 22.607 8.862 -2.027 1.00 16.36 ? 2 UMS A "C2'" 1 HETATM 30 SE "SE2'" . UMS A 1 2 ? 23.744 7.518 -3.141 0.86 18.01 ? 2 UMS A "SE2'" 1 HETATM 31 C "C1'" . UMS A 1 2 ? 22.953 8.474 -0.608 1.00 15.57 ? 2 UMS A "C1'" 1 HETATM 32 C "CA'" . UMS A 1 2 ? 22.526 5.990 -3.088 1.00 17.79 ? 2 UMS A "CA'" 1 HETATM 33 N N1 . UMS A 1 2 ? 21.795 8.802 0.300 1.00 13.71 ? 2 UMS A N1 1 HETATM 34 C C2 . UMS A 1 2 ? 20.829 7.803 0.432 1.00 13.22 ? 2 UMS A C2 1 HETATM 35 O O2 . UMS A 1 2 ? 20.909 6.741 -0.165 1.00 15.06 ? 2 UMS A O2 1 HETATM 36 N N3 . UMS A 1 2 ? 19.769 8.097 1.263 1.00 13.62 ? 2 UMS A N3 1 HETATM 37 C C4 . UMS A 1 2 ? 19.539 9.256 1.961 1.00 12.92 ? 2 UMS A C4 1 HETATM 38 O O4 . UMS A 1 2 ? 18.538 9.362 2.672 1.00 14.02 ? 2 UMS A O4 1 HETATM 39 C C5 . UMS A 1 2 ? 20.584 10.321 1.775 1.00 13.31 ? 2 UMS A C5 1 HETATM 40 C C6 . UMS A 1 2 ? 21.665 10.012 0.960 1.00 13.10 ? 2 UMS A C6 1 ATOM 41 P P . DG A 1 3 ? 22.754 11.119 -4.648 1.00 24.39 ? 3 DG A P 1 ATOM 42 O OP1 . DG A 1 3 ? 23.651 11.483 -5.791 1.00 25.98 ? 3 DG A OP1 1 ATOM 43 O OP2 . DG A 1 3 ? 21.920 12.142 -4.026 1.00 24.18 ? 3 DG A OP2 1 ATOM 44 O "O5'" . DG A 1 3 ? 21.816 9.911 -5.052 1.00 23.60 ? 3 DG A "O5'" 1 ATOM 45 C "C5'" . DG A 1 3 ? 20.435 10.022 -4.908 1.00 21.01 ? 3 DG A "C5'" 1 ATOM 46 C "C4'" . DG A 1 3 ? 19.843 8.649 -4.987 1.00 18.92 ? 3 DG A "C4'" 1 ATOM 47 O "O4'" . DG A 1 3 ? 19.916 8.141 -3.630 1.00 17.38 ? 3 DG A "O4'" 1 ATOM 48 C "C3'" . DG A 1 3 ? 18.366 8.697 -5.318 1.00 18.43 ? 3 DG A "C3'" 1 ATOM 49 O "O3'" . DG A 1 3 ? 18.124 8.450 -6.689 1.00 18.90 ? 3 DG A "O3'" 1 ATOM 50 C "C2'" . DG A 1 3 ? 17.763 7.600 -4.467 1.00 17.32 ? 3 DG A "C2'" 1 ATOM 51 C "C1'" . DG A 1 3 ? 18.732 7.408 -3.314 1.00 16.33 ? 3 DG A "C1'" 1 ATOM 52 N N9 . DG A 1 3 ? 18.175 8.220 -2.220 1.00 15.06 ? 3 DG A N9 1 ATOM 53 C C8 . DG A 1 3 ? 18.538 9.452 -1.733 1.00 15.63 ? 3 DG A C8 1 ATOM 54 N N7 . DG A 1 3 ? 17.790 9.852 -0.726 1.00 13.67 ? 3 DG A N7 1 ATOM 55 C C5 . DG A 1 3 ? 16.877 8.818 -0.547 1.00 13.35 ? 3 DG A C5 1 ATOM 56 C C6 . DG A 1 3 ? 15.793 8.652 0.413 1.00 12.17 ? 3 DG A C6 1 ATOM 57 O O6 . DG A 1 3 ? 15.440 9.422 1.316 1.00 13.77 ? 3 DG A O6 1 ATOM 58 N N1 . DG A 1 3 ? 15.124 7.435 0.214 1.00 12.75 ? 3 DG A N1 1 ATOM 59 C C2 . DG A 1 3 ? 15.429 6.513 -0.750 1.00 13.70 ? 3 DG A C2 1 ATOM 60 N N2 . DG A 1 3 ? 14.643 5.399 -0.803 1.00 14.30 ? 3 DG A N2 1 ATOM 61 N N3 . DG A 1 3 ? 16.420 6.654 -1.609 1.00 13.73 ? 3 DG A N3 1 ATOM 62 C C4 . DG A 1 3 ? 17.085 7.814 -1.457 1.00 13.40 ? 3 DG A C4 1 HETATM 63 N N1 . BRU A 1 4 ? 13.394 7.393 -3.664 1.00 13.79 ? 4 BRU A N1 1 HETATM 64 C C2 . BRU A 1 4 ? 12.512 7.483 -2.593 1.00 12.66 ? 4 BRU A C2 1 HETATM 65 N N3 . BRU A 1 4 ? 12.641 8.614 -1.793 1.00 12.75 ? 4 BRU A N3 1 HETATM 66 C C4 . BRU A 1 4 ? 13.509 9.668 -1.967 1.00 12.02 ? 4 BRU A C4 1 HETATM 67 C C5 . BRU A 1 4 ? 14.391 9.551 -3.156 1.00 13.95 ? 4 BRU A C5 1 HETATM 68 C C6 . BRU A 1 4 ? 14.297 8.407 -3.932 1.00 14.32 ? 4 BRU A C6 1 HETATM 69 O O2 . BRU A 1 4 ? 11.657 6.635 -2.382 1.00 13.78 ? 4 BRU A O2 1 HETATM 70 O O4 . BRU A 1 4 ? 13.522 10.629 -1.185 1.00 11.89 ? 4 BRU A O4 1 HETATM 71 BR BR . BRU A 1 4 ? 15.426 10.796 -3.480 0.24 22.44 ? 4 BRU A BR 1 HETATM 72 C "C1'" . BRU A 1 4 ? 13.283 6.144 -4.503 1.00 15.63 ? 4 BRU A "C1'" 1 HETATM 73 C "C2'" . BRU A 1 4 ? 12.306 6.413 -5.623 1.00 16.98 ? 4 BRU A "C2'" 1 HETATM 74 C "C3'" . BRU A 1 4 ? 13.170 6.743 -6.833 1.00 17.08 ? 4 BRU A "C3'" 1 HETATM 75 C "C4'" . BRU A 1 4 ? 14.494 6.056 -6.526 1.00 17.70 ? 4 BRU A "C4'" 1 HETATM 76 O "O3'" . BRU A 1 4 ? 12.550 6.239 -7.992 1.00 17.23 ? 4 BRU A "O3'" 1 HETATM 77 O "O4'" . BRU A 1 4 ? 14.595 6.090 -5.073 1.00 16.05 ? 4 BRU A "O4'" 1 HETATM 78 C "C5'" . BRU A 1 4 ? 15.708 6.757 -7.088 1.00 18.49 ? 4 BRU A "C5'" 1 HETATM 79 O "O5'" . BRU A 1 4 ? 15.650 8.154 -6.859 1.00 19.61 ? 4 BRU A "O5'" 1 HETATM 80 P P . BRU A 1 4 ? 16.828 9.105 -7.364 1.00 19.12 ? 4 BRU A P 1 HETATM 81 O OP1 . BRU A 1 4 ? 17.014 8.958 -8.843 1.00 22.38 ? 4 BRU A OP1 1 HETATM 82 O OP2 . BRU A 1 4 ? 16.567 10.430 -6.805 1.00 19.80 ? 4 BRU A OP2 1 ATOM 83 P P . DA A 1 5 ? 11.428 7.114 -8.701 1.00 18.92 ? 5 DA A P 1 ATOM 84 O OP1 . DA A 1 5 ? 11.348 6.621 -10.095 1.00 20.64 ? 5 DA A OP1 1 ATOM 85 O OP2 . DA A 1 5 ? 11.666 8.548 -8.442 1.00 18.79 ? 5 DA A OP2 1 ATOM 86 O "O5'" . DA A 1 5 ? 10.137 6.675 -7.898 1.00 16.11 ? 5 DA A "O5'" 1 ATOM 87 C "C5'" . DA A 1 5 ? 9.132 7.598 -7.578 1.00 14.46 ? 5 DA A "C5'" 1 ATOM 88 C "C4'" . DA A 1 5 ? 8.252 6.992 -6.518 1.00 13.62 ? 5 DA A "C4'" 1 ATOM 89 O "O4'" . DA A 1 5 ? 9.073 6.874 -5.317 1.00 13.22 ? 5 DA A "O4'" 1 ATOM 90 C "C3'" . DA A 1 5 ? 7.079 7.868 -6.130 1.00 14.20 ? 5 DA A "C3'" 1 ATOM 91 O "O3'" . DA A 1 5 ? 5.904 7.483 -6.828 1.00 15.07 ? 5 DA A "O3'" 1 ATOM 92 C "C2'" . DA A 1 5 ? 6.951 7.656 -4.632 1.00 13.25 ? 5 DA A "C2'" 1 ATOM 93 C "C1'" . DA A 1 5 ? 8.374 7.360 -4.186 1.00 12.29 ? 5 DA A "C1'" 1 ATOM 94 N N9 . DA A 1 5 ? 9.042 8.596 -3.753 1.00 11.03 ? 5 DA A N9 1 ATOM 95 C C8 . DA A 1 5 ? 10.070 9.260 -4.385 1.00 12.40 ? 5 DA A C8 1 ATOM 96 N N7 . DA A 1 5 ? 10.524 10.298 -3.718 1.00 11.67 ? 5 DA A N7 1 ATOM 97 C C5 . DA A 1 5 ? 9.723 10.341 -2.586 1.00 10.86 ? 5 DA A C5 1 ATOM 98 C C6 . DA A 1 5 ? 9.700 11.208 -1.476 1.00 11.77 ? 5 DA A C6 1 ATOM 99 N N6 . DA A 1 5 ? 10.562 12.202 -1.299 1.00 12.10 ? 5 DA A N6 1 ATOM 100 N N1 . DA A 1 5 ? 8.758 10.993 -0.537 1.00 11.00 ? 5 DA A N1 1 ATOM 101 C C2 . DA A 1 5 ? 7.918 9.951 -0.680 1.00 11.46 ? 5 DA A C2 1 ATOM 102 N N3 . DA A 1 5 ? 7.855 9.048 -1.670 1.00 11.27 ? 5 DA A N3 1 ATOM 103 C C4 . DA A 1 5 ? 8.790 9.308 -2.600 1.00 10.58 ? 5 DA A C4 1 ATOM 104 P P . DC A 1 6 ? 4.925 8.631 -7.378 1.00 15.54 ? 6 DC A P 1 ATOM 105 O OP1 . DC A 1 6 ? 3.854 7.923 -8.141 1.00 17.94 ? 6 DC A OP1 1 ATOM 106 O OP2 . DC A 1 6 ? 5.700 9.710 -8.014 1.00 15.96 ? 6 DC A OP2 1 ATOM 107 O "O5'" . DC A 1 6 ? 4.322 9.228 -6.038 1.00 15.09 ? 6 DC A "O5'" 1 ATOM 108 C "C5'" . DC A 1 6 ? 3.490 8.423 -5.238 1.00 14.43 ? 6 DC A "C5'" 1 ATOM 109 C "C4'" . DC A 1 6 ? 3.109 9.136 -3.969 1.00 14.45 ? 6 DC A "C4'" 1 ATOM 110 O "O4'" . DC A 1 6 ? 4.297 9.251 -3.156 1.00 13.95 ? 6 DC A "O4'" 1 ATOM 111 C "C3'" . DC A 1 6 ? 2.639 10.571 -4.145 1.00 14.66 ? 6 DC A "C3'" 1 ATOM 112 O "O3'" . DC A 1 6 ? 1.247 10.662 -4.425 1.00 16.88 ? 6 DC A "O3'" 1 ATOM 113 C "C2'" . DC A 1 6 ? 3.022 11.217 -2.825 1.00 14.17 ? 6 DC A "C2'" 1 ATOM 114 C "C1'" . DC A 1 6 ? 4.257 10.451 -2.380 1.00 13.00 ? 6 DC A "C1'" 1 ATOM 115 N N1 . DC A 1 6 ? 5.391 11.317 -2.783 1.00 11.62 ? 6 DC A N1 1 ATOM 116 C C2 . DC A 1 6 ? 5.759 12.341 -1.910 1.00 10.92 ? 6 DC A C2 1 ATOM 117 O O2 . DC A 1 6 ? 5.083 12.492 -0.895 1.00 12.84 ? 6 DC A O2 1 ATOM 118 N N3 . DC A 1 6 ? 6.819 13.137 -2.206 1.00 10.62 ? 6 DC A N3 1 ATOM 119 C C4 . DC A 1 6 ? 7.501 12.971 -3.337 1.00 10.16 ? 6 DC A C4 1 ATOM 120 N N4 . DC A 1 6 ? 8.554 13.763 -3.547 1.00 12.37 ? 6 DC A N4 1 ATOM 121 C C5 . DC A 1 6 ? 7.139 11.978 -4.292 1.00 10.39 ? 6 DC A C5 1 ATOM 122 C C6 . DC A 1 6 ? 6.070 11.151 -3.973 1.00 10.67 ? 6 DC A C6 1 ATOM 123 P P . DA A 1 7 ? 0.704 11.922 -5.288 1.00 17.60 ? 7 DA A P 1 ATOM 124 O OP1 . DA A 1 7 ? -0.678 11.563 -5.804 1.00 20.28 ? 7 DA A OP1 1 ATOM 125 O OP2 . DA A 1 7 ? 1.725 12.495 -6.217 1.00 18.36 ? 7 DA A OP2 1 ATOM 126 O "O5'" . DA A 1 7 ? 0.546 13.021 -4.170 1.00 16.61 ? 7 DA A "O5'" 1 ATOM 127 C "C5'" . DA A 1 7 ? -0.253 12.775 -3.030 1.00 15.69 ? 7 DA A "C5'" 1 ATOM 128 C "C4'" . DA A 1 7 ? -0.197 13.956 -2.101 1.00 15.13 ? 7 DA A "C4'" 1 ATOM 129 O "O4'" . DA A 1 7 ? 1.129 14.046 -1.525 1.00 14.94 ? 7 DA A "O4'" 1 ATOM 130 C "C3'" . DA A 1 7 ? -0.403 15.273 -2.826 1.00 15.72 ? 7 DA A "C3'" 1 ATOM 131 O "O3'" . DA A 1 7 ? -1.753 15.674 -2.827 1.00 16.42 ? 7 DA A "O3'" 1 ATOM 132 C "C2'" . DA A 1 7 ? 0.466 16.254 -2.069 1.00 15.47 ? 7 DA A "C2'" 1 ATOM 133 C "C1'" . DA A 1 7 ? 1.531 15.397 -1.407 1.00 14.44 ? 7 DA A "C1'" 1 ATOM 134 N N9 . DA A 1 7 ? 2.791 15.525 -2.134 1.00 12.10 ? 7 DA A N9 1 ATOM 135 C C8 . DA A 1 7 ? 3.236 14.794 -3.212 1.00 12.09 ? 7 DA A C8 1 ATOM 136 N N7 . DA A 1 7 ? 4.437 15.139 -3.623 1.00 11.62 ? 7 DA A N7 1 ATOM 137 C C5 . DA A 1 7 ? 4.806 16.154 -2.742 1.00 11.48 ? 7 DA A C5 1 ATOM 138 C C6 . DA A 1 7 ? 5.975 16.919 -2.607 1.00 10.97 ? 7 DA A C6 1 ATOM 139 N N6 . DA A 1 7 ? 7.061 16.737 -3.358 1.00 12.69 ? 7 DA A N6 1 ATOM 140 N N1 . DA A 1 7 ? 5.998 17.871 -1.641 1.00 11.32 ? 7 DA A N1 1 ATOM 141 C C2 . DA A 1 7 ? 4.926 18.017 -0.853 1.00 10.91 ? 7 DA A C2 1 ATOM 142 N N3 . DA A 1 7 ? 3.775 17.341 -0.873 1.00 12.36 ? 7 DA A N3 1 ATOM 143 C C4 . DA A 1 7 ? 3.788 16.416 -1.834 1.00 11.03 ? 7 DA A C4 1 ATOM 144 P P . DC A 1 8 ? -2.280 16.606 -4.009 1.00 17.45 ? 8 DC A P 1 ATOM 145 O OP1 . DC A 1 8 ? -3.773 16.611 -3.890 1.00 19.73 ? 8 DC A OP1 1 ATOM 146 O OP2 . DC A 1 8 ? -1.651 16.228 -5.305 1.00 20.27 ? 8 DC A OP2 1 ATOM 147 O "O5'" . DC A 1 8 ? -1.774 18.061 -3.623 1.00 16.98 ? 8 DC A "O5'" 1 ATOM 148 C "C5'" . DC A 1 8 ? -2.226 18.696 -2.428 1.00 16.56 ? 8 DC A "C5'" 1 ATOM 149 C "C4'" . DC A 1 8 ? -1.556 20.035 -2.243 1.00 18.07 ? 8 DC A "C4'" 1 ATOM 150 O "O4'" . DC A 1 8 ? -0.121 19.833 -2.110 1.00 17.75 ? 8 DC A "O4'" 1 ATOM 151 C "C3'" . DC A 1 8 ? -1.761 21.042 -3.383 1.00 19.46 ? 8 DC A "C3'" 1 ATOM 152 O "O3'" . DC A 1 8 ? -1.964 22.323 -2.801 1.00 22.06 ? 8 DC A "O3'" 1 ATOM 153 C "C2'" . DC A 1 8 ? -0.437 21.031 -4.116 1.00 19.16 ? 8 DC A "C2'" 1 ATOM 154 C "C1'" . DC A 1 8 ? 0.562 20.697 -3.011 1.00 18.57 ? 8 DC A "C1'" 1 ATOM 155 N N1 . DC A 1 8 ? 1.714 19.954 -3.575 1.00 16.46 ? 8 DC A N1 1 ATOM 156 C C2 . DC A 1 8 ? 3.013 20.449 -3.348 1.00 15.92 ? 8 DC A C2 1 ATOM 157 O O2 . DC A 1 8 ? 3.158 21.418 -2.580 1.00 16.99 ? 8 DC A O2 1 ATOM 158 N N3 . DC A 1 8 ? 4.061 19.849 -3.956 1.00 14.82 ? 8 DC A N3 1 ATOM 159 C C4 . DC A 1 8 ? 3.877 18.791 -4.755 1.00 12.86 ? 8 DC A C4 1 ATOM 160 N N4 . DC A 1 8 ? 4.935 18.290 -5.404 1.00 14.21 ? 8 DC A N4 1 ATOM 161 C C5 . DC A 1 8 ? 2.596 18.205 -4.946 1.00 13.68 ? 8 DC A C5 1 ATOM 162 C C6 . DC A 1 8 ? 1.531 18.827 -4.330 1.00 14.79 ? 8 DC A C6 1 HETATM 163 O O . HOH B 2 . ? 6.313 6.729 -1.299 1.00 14.59 ? 9 HOH A O 1 HETATM 164 O O . HOH B 2 . ? 12.305 12.179 -4.926 1.00 23.78 ? 10 HOH A O 1 HETATM 165 O O . HOH B 2 . ? 25.705 16.826 0.862 1.00 22.33 ? 11 HOH A O 1 HETATM 166 O O . HOH B 2 . ? 1.420 18.640 0.331 1.00 20.45 ? 12 HOH A O 1 HETATM 167 O O . HOH B 2 . ? 22.780 14.443 7.993 1.00 25.08 ? 13 HOH A O 1 HETATM 168 O O . HOH B 2 . ? 5.874 14.528 -6.074 1.00 24.33 ? 14 HOH A O 1 HETATM 169 O O . HOH B 2 . ? 25.703 4.458 2.482 1.00 19.71 ? 15 HOH A O 1 HETATM 170 O O . HOH B 2 . ? 21.551 4.069 0.017 1.00 23.02 ? 16 HOH A O 1 HETATM 171 O O . HOH B 2 . ? -5.010 16.729 -1.437 1.00 17.27 ? 17 HOH A O 1 HETATM 172 O O . HOH B 2 . ? 17.965 12.301 0.472 1.00 25.93 ? 18 HOH A O 1 HETATM 173 O O . HOH B 2 . ? 20.451 13.587 -0.177 1.00 28.01 ? 19 HOH A O 1 HETATM 174 O O . HOH B 2 . ? 0.000 16.704 -7.014 1.00 23.58 ? 20 HOH A O 1 HETATM 175 O O . HOH B 2 . ? 14.343 13.192 -1.135 1.00 25.16 ? 21 HOH A O 1 HETATM 176 O O . HOH B 2 . ? 3.018 5.310 -7.273 1.00 28.15 ? 22 HOH A O 1 HETATM 177 O O . HOH B 2 . ? 25.213 15.163 -2.587 1.00 27.43 ? 23 HOH A O 1 HETATM 178 O O . HOH B 2 . ? 14.148 11.946 -6.742 1.00 29.88 ? 24 HOH A O 1 HETATM 179 O O . HOH B 2 . ? 21.844 14.927 3.468 1.00 32.24 ? 25 HOH A O 1 HETATM 180 O O . HOH B 2 . ? 10.169 13.565 -5.976 1.00 23.20 ? 26 HOH A O 1 HETATM 181 O O . HOH B 2 . ? 3.180 19.700 2.242 1.00 27.88 ? 27 HOH A O 1 HETATM 182 O O . HOH B 2 . ? 17.647 8.923 6.273 1.00 23.01 ? 28 HOH A O 1 HETATM 183 O O . HOH B 2 . ? 5.912 12.602 -7.653 1.00 27.98 ? 29 HOH A O 1 HETATM 184 O O . HOH B 2 . ? 9.277 5.118 -11.069 1.00 29.00 ? 30 HOH A O 1 HETATM 185 O O . HOH B 2 . ? 25.289 15.710 8.454 1.00 19.89 ? 31 HOH A O 1 HETATM 186 O O . HOH B 2 . ? 18.207 13.040 -3.589 1.00 29.87 ? 32 HOH A O 1 HETATM 187 O O . HOH B 2 . ? 12.689 13.963 -3.004 1.00 36.57 ? 33 HOH A O 1 HETATM 188 O O . HOH B 2 . ? 1.936 15.214 -7.053 1.00 26.29 ? 34 HOH A O 1 HETATM 189 O O . HOH B 2 . ? 20.354 12.213 -2.320 1.00 30.76 ? 35 HOH A O 1 HETATM 190 O O . HOH B 2 . ? 16.299 11.491 2.604 1.00 31.17 ? 36 HOH A O 1 HETATM 191 O O . HOH B 2 . ? 24.633 4.544 -0.188 1.00 27.92 ? 37 HOH A O 1 HETATM 192 O O . HOH B 2 . ? 19.428 11.419 6.620 1.00 35.04 ? 38 HOH A O 1 HETATM 193 O O . HOH B 2 . ? 17.871 12.665 -6.034 1.00 38.66 ? 39 HOH A O 1 HETATM 194 O O . HOH B 2 . ? -4.903 13.948 -4.163 1.00 35.67 ? 40 HOH A O 1 HETATM 195 O O . HOH B 2 . ? 8.260 11.146 -7.630 1.00 33.02 ? 41 HOH A O 1 HETATM 196 O O . HOH B 2 . ? 0.482 5.860 -6.167 1.00 46.00 ? 42 HOH A O 1 HETATM 197 O O . HOH B 2 . ? 9.120 6.701 -13.263 1.00 35.70 ? 43 HOH A O 1 HETATM 198 O O . HOH B 2 . ? -5.780 18.952 -4.882 1.00 50.53 ? 44 HOH A O 1 HETATM 199 O O . HOH B 2 . ? 17.079 11.295 -10.520 1.00 48.05 ? 45 HOH A O 1 HETATM 200 O O . HOH B 2 . ? 16.157 10.728 5.069 1.00 49.78 ? 46 HOH A O 1 HETATM 201 O O . HOH B 2 . ? 0.326 23.916 -1.376 1.00 33.62 ? 47 HOH A O 1 HETATM 202 O O . HOH B 2 . ? 27.101 14.498 -4.253 1.00 36.32 ? 48 HOH A O 1 HETATM 203 O O . HOH B 2 . ? 12.351 3.779 -13.234 1.00 45.21 ? 49 HOH A O 1 HETATM 204 O O . HOH B 2 . ? 20.592 12.883 8.645 1.00 42.65 ? 50 HOH A O 1 HETATM 205 O O . HOH B 2 . ? 16.809 14.103 -1.136 1.00 46.43 ? 51 HOH A O 1 HETATM 206 O O . HOH B 2 . ? 13.764 5.534 -11.957 1.00 47.15 ? 52 HOH A O 1 HETATM 207 O O . HOH B 2 . ? -2.754 13.647 -6.803 1.00 54.94 ? 53 HOH A O 1 #