1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Zhang, H.P.
Nagasima, T.
Hayashi, F.
Yokoyama, S.
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
to be published
0353
Solution structure of the UAS domain of human UBX domain-containing protein 7
10.2210/pdb2dlx/pdb
pdb_00002dlx
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
17337.371
UBX domain-containing protein 7
UAS domain
1
man
polymer
no
no
GSSGSSGIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIF
WQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEWHQLDVSSFLDQVTGFLGEHGQLDGLSSSSGPSSG
GSSGSSGIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIF
WQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEWHQLDVSSFLDQVTGFLGEHGQLDGLSSSSGPSSG
A
hsk002000776.3
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
sample
cell free protein synthesis
UBXD7, KIAA0794
9606
Homo sapiens
Cell free synthesis
PLASMID
P050719-12
RIKEN Structural Genomics/Proteomics Initiative
RSGI
NPPSFA, National Project on Protein Structural and Functional Analyses
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2006-10-20
1
1
2008-04-30
1
2
2011-07-13
1
3
2022-03-09
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_struct_ref_seq_dif.details
HELIX
Determination method: Author determined
Y
PDBJ
Y
PDBJ
2006-04-20
REL
spectrometer_id 1 for 3D_15N_separated_NOESY; spectrometer_id 2 for 3D_13C_separated_NOESY
target function, structures with the lowest energy, structures with the least restraint violations
100
20
3D_15N-separated_NOESY
3D_13C-separated_NOESY
120mM
7.0
ambient
298
K
torsion angle dynamics
1
lowest energy
0.45 mM 13C, 15N-labeled protein; 20mM d-Tris-HCl(pH7.0); 100mM NaCl; 1mM d-DTT; 0.02%NaN3, 90%H2O; 10%D2O
90% H2O/10% D2O
Varian
collection
VNMR
6.1C
Delaglio, F.
processing
NMRPipe
20031121
Johnson,B.A.
data analysis
NMRView
5.04
Kobayashi,N.
data analysis
KUJIRA
0.93191
Guntent,P.
structure solution
CYANA
2.0.17
Guntent,P.
refinement
CYANA
2.0.17
800
Varian
INOVA
900
Varian
INOVA
GLY
1
n
1
GLY
1
A
SER
2
n
2
SER
2
A
SER
3
n
3
SER
3
A
GLY
4
n
4
GLY
4
A
SER
5
n
5
SER
5
A
SER
6
n
6
SER
6
A
GLY
7
n
7
GLY
7
A
ILE
8
n
8
ILE
8
A
ASP
9
n
9
ASP
9
A
LYS
10
n
10
LYS
10
A
LYS
11
n
11
LYS
11
A
LEU
12
n
12
LEU
12
A
THR
13
n
13
THR
13
A
THR
14
n
14
THR
14
A
LEU
15
n
15
LEU
15
A
ALA
16
n
16
ALA
16
A
ASP
17
n
17
ASP
17
A
LEU
18
n
18
LEU
18
A
PHE
19
n
19
PHE
19
A
ARG
20
n
20
ARG
20
A
PRO
21
n
21
PRO
21
A
PRO
22
n
22
PRO
22
A
ILE
23
n
23
ILE
23
A
ASP
24
n
24
ASP
24
A
LEU
25
n
25
LEU
25
A
MET
26
n
26
MET
26
A
HIS
27
n
27
HIS
27
A
LYS
28
n
28
LYS
28
A
GLY
29
n
29
GLY
29
A
SER
30
n
30
SER
30
A
PHE
31
n
31
PHE
31
A
GLU
32
n
32
GLU
32
A
THR
33
n
33
THR
33
A
ALA
34
n
34
ALA
34
A
LYS
35
n
35
LYS
35
A
GLU
36
n
36
GLU
36
A
CYS
37
n
37
CYS
37
A
GLY
38
n
38
GLY
38
A
GLN
39
n
39
GLN
39
A
MET
40
n
40
MET
40
A
GLN
41
n
41
GLN
41
A
ASN
42
n
42
ASN
42
A
LYS
43
n
43
LYS
43
A
TRP
44
n
44
TRP
44
A
LEU
45
n
45
LEU
45
A
MET
46
n
46
MET
46
A
ILE
47
n
47
ILE
47
A
ASN
48
n
48
ASN
48
A
ILE
49
n
49
ILE
49
A
GLN
50
n
50
GLN
50
A
ASN
51
n
51
ASN
51
A
VAL
52
n
52
VAL
52
A
GLN
53
n
53
GLN
53
A
ASP
54
n
54
ASP
54
A
PHE
55
n
55
PHE
55
A
ALA
56
n
56
ALA
56
A
CYS
57
n
57
CYS
57
A
GLN
58
n
58
GLN
58
A
CYS
59
n
59
CYS
59
A
LEU
60
n
60
LEU
60
A
ASN
61
n
61
ASN
61
A
ARG
62
n
62
ARG
62
A
ASP
63
n
63
ASP
63
A
VAL
64
n
64
VAL
64
A
TRP
65
n
65
TRP
65
A
SER
66
n
66
SER
66
A
ASN
67
n
67
ASN
67
A
GLU
68
n
68
GLU
68
A
ALA
69
n
69
ALA
69
A
VAL
70
n
70
VAL
70
A
LYS
71
n
71
LYS
71
A
ASN
72
n
72
ASN
72
A
ILE
73
n
73
ILE
73
A
ILE
74
n
74
ILE
74
A
ARG
75
n
75
ARG
75
A
GLU
76
n
76
GLU
76
A
HIS
77
n
77
HIS
77
A
PHE
78
n
78
PHE
78
A
ILE
79
n
79
ILE
79
A
PHE
80
n
80
PHE
80
A
TRP
81
n
81
TRP
81
A
GLN
82
n
82
GLN
82
A
VAL
83
n
83
VAL
83
A
TYR
84
n
84
TYR
84
A
HIS
85
n
85
HIS
85
A
ASP
86
n
86
ASP
86
A
SER
87
n
87
SER
87
A
GLU
88
n
88
GLU
88
A
GLU
89
n
89
GLU
89
A
GLY
90
n
90
GLY
90
A
GLN
91
n
91
GLN
91
A
ARG
92
n
92
ARG
92
A
TYR
93
n
93
TYR
93
A
ILE
94
n
94
ILE
94
A
GLN
95
n
95
GLN
95
A
PHE
96
n
96
PHE
96
A
TYR
97
n
97
TYR
97
A
LYS
98
n
98
LYS
98
A
LEU
99
n
99
LEU
99
A
GLY
100
n
100
GLY
100
A
ASP
101
n
101
ASP
101
A
PHE
102
n
102
PHE
102
A
PRO
103
n
103
PRO
103
A
TYR
104
n
104
TYR
104
A
VAL
105
n
105
VAL
105
A
SER
106
n
106
SER
106
A
ILE
107
n
107
ILE
107
A
LEU
108
n
108
LEU
108
A
ASP
109
n
109
ASP
109
A
PRO
110
n
110
PRO
110
A
ARG
111
n
111
ARG
111
A
THR
112
n
112
THR
112
A
GLY
113
n
113
GLY
113
A
GLN
114
n
114
GLN
114
A
LYS
115
n
115
LYS
115
A
LEU
116
n
116
LEU
116
A
VAL
117
n
117
VAL
117
A
GLU
118
n
118
GLU
118
A
TRP
119
n
119
TRP
119
A
HIS
120
n
120
HIS
120
A
GLN
121
n
121
GLN
121
A
LEU
122
n
122
LEU
122
A
ASP
123
n
123
ASP
123
A
VAL
124
n
124
VAL
124
A
SER
125
n
125
SER
125
A
SER
126
n
126
SER
126
A
PHE
127
n
127
PHE
127
A
LEU
128
n
128
LEU
128
A
ASP
129
n
129
ASP
129
A
GLN
130
n
130
GLN
130
A
VAL
131
n
131
VAL
131
A
THR
132
n
132
THR
132
A
GLY
133
n
133
GLY
133
A
PHE
134
n
134
PHE
134
A
LEU
135
n
135
LEU
135
A
GLY
136
n
136
GLY
136
A
GLU
137
n
137
GLU
137
A
HIS
138
n
138
HIS
138
A
GLY
139
n
139
GLY
139
A
GLN
140
n
140
GLN
140
A
LEU
141
n
141
LEU
141
A
ASP
142
n
142
ASP
142
A
GLY
143
n
143
GLY
143
A
LEU
144
n
144
LEU
144
A
SER
145
n
145
SER
145
A
SER
146
n
146
SER
146
A
SER
147
n
147
SER
147
A
SER
148
n
148
SER
148
A
GLY
149
n
149
GLY
149
A
PRO
150
n
150
PRO
150
A
SER
151
n
151
SER
151
A
SER
152
n
152
SER
152
A
GLY
153
n
153
GLY
153
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
TRP
81
A
O
TRP
81
A
N
ASN
48
A
N
ASN
48
A
N
LEU
45
A
N
LEU
45
A
O
LEU
108
A
O
LEU
108
A
N
VAL
105
A
N
VAL
105
A
O
TRP
119
A
O
TRP
119
1
A
PHE
19
-38.48
-25.81
1
A
PRO
22
-69.72
80.00
1
A
GLN
58
-37.37
-35.72
1
A
VAL
64
-49.49
-70.24
1
A
SER
66
-37.79
-34.64
1
A
ASN
67
-52.34
107.29
1
A
PHE
80
-56.45
108.22
1
A
SER
87
-54.81
171.97
1
A
TYR
93
-35.61
-39.51
1
A
LEU
141
-55.79
171.23
2
A
ASP
17
-52.26
107.00
2
A
PRO
22
-69.74
5.97
2
A
ALA
56
-34.10
-39.51
2
A
ASN
61
-49.13
-17.05
2
A
VAL
64
-61.80
-71.63
2
A
GLU
76
-98.04
-68.25
2
A
PHE
96
-42.61
-70.78
2
A
LEU
144
-52.79
107.29
3
A
ALA
56
-97.93
-68.68
3
A
PHE
80
-57.32
102.76
3
A
SER
87
-52.15
173.31
3
A
LYS
115
-55.57
108.74
3
A
HIS
138
-91.61
-60.12
3
A
LEU
141
-58.86
171.32
3
A
PRO
150
-69.71
90.47
4
A
ASP
17
-95.47
-65.16
4
A
PRO
22
-69.82
0.56
4
A
ILE
23
35.14
32.01
4
A
TRP
44
-58.28
170.80
4
A
LEU
122
-57.74
177.68
4
A
PRO
150
-69.79
86.88
5
A
THR
14
-94.92
-60.24
5
A
LEU
18
-64.64
-70.06
5
A
PRO
22
-69.77
97.94
5
A
ALA
34
-35.61
-30.53
5
A
ASN
67
-58.55
109.55
5
A
PHE
80
-58.69
104.72
5
A
PRO
150
-69.78
-177.47
6
A
PRO
22
-69.78
97.39
6
A
ALA
34
-34.77
-31.79
6
A
ASN
61
-46.02
-19.98
6
A
VAL
64
-53.31
-71.84
6
A
PRO
150
-69.82
7.84
7
A
PRO
22
-69.75
2.65
7
A
ILE
23
38.79
31.98
7
A
MET
26
-53.08
106.30
8
A
PRO
22
-69.75
0.15
8
A
GLU
89
-39.22
-39.47
8
A
ARG
111
-93.73
-60.08
8
A
LEU
116
-97.96
-72.65
8
A
LEU
141
-55.99
170.80
8
A
PRO
150
-69.74
1.67
9
A
ALA
16
-95.10
-67.94
9
A
ILE
23
-39.10
-28.86
9
A
ALA
56
-32.17
-37.92
9
A
VAL
64
-56.04
-70.30
9
A
ASN
67
-57.39
109.81
9
A
LEU
141
-53.20
175.61
10
A
PRO
22
-69.83
83.51
10
A
GLN
53
-93.38
-67.98
10
A
ASP
54
-58.02
103.01
10
A
ASP
142
-96.21
-60.02
11
A
ASP
17
-53.73
177.60
11
A
PRO
22
-69.69
86.22
11
A
ALA
34
-38.07
-28.00
11
A
TRP
44
-58.17
177.83
11
A
ASP
54
-58.91
176.78
11
A
ALA
56
-35.45
-38.56
11
A
ASN
67
-53.71
109.71
11
A
GLU
76
-90.60
-68.47
12
A
PRO
22
-69.82
90.70
12
A
TRP
44
-55.15
172.39
12
A
PRO
110
-69.75
5.44
12
A
LEU
116
-95.63
-72.39
12
A
HIS
138
-94.45
-62.67
12
A
SER
146
-58.43
105.68
13
A
ILE
23
38.31
32.07
13
A
GLU
76
-90.05
-66.17
13
A
PHE
96
-46.74
-71.03
13
A
PRO
150
-69.83
-177.84
14
A
PRO
22
-69.82
5.07
14
A
ALA
34
-34.98
-31.78
14
A
VAL
64
-56.04
-70.14
14
A
PHE
80
-52.06
105.00
14
A
GLU
88
-32.64
-38.09
14
A
LYS
115
-58.01
107.36
14
A
PRO
150
-69.75
2.95
15
A
ASP
17
-53.28
105.21
15
A
LEU
18
-51.98
178.79
15
A
PRO
22
-69.73
17.82
15
A
ILE
23
-33.50
-39.49
15
A
PHE
80
-56.32
106.62
15
A
ARG
111
-93.55
-76.62
15
A
LEU
144
-92.82
-61.27
15
A
PRO
150
-69.71
3.05
16
A
PRO
22
-69.73
14.19
16
A
ILE
23
-36.71
-32.78
16
A
ALA
56
-47.02
-18.87
16
A
VAL
64
-48.98
-72.40
16
A
ASN
67
-54.63
108.88
16
A
PHE
80
-56.87
108.95
16
A
GLN
140
-94.16
-68.34
17
A
PRO
22
-69.82
87.03
17
A
MET
26
-53.52
108.91
17
A
VAL
52
-38.28
-38.62
17
A
GLN
53
-56.07
109.51
17
A
ASN
61
-46.06
-19.17
17
A
VAL
64
-47.61
-70.15
17
A
SER
66
-38.98
-34.44
17
A
ASN
67
-53.20
105.33
17
A
ASN
72
-48.84
-19.62
17
A
SER
87
-58.18
170.28
18
A
PRO
22
-69.78
5.10
18
A
ILE
23
-35.74
-34.48
18
A
SER
30
-66.68
-178.24
18
A
ASN
67
-51.90
103.45
18
A
GLU
76
-94.02
-64.44
19
A
PRO
22
-69.78
14.01
19
A
VAL
64
-50.14
-71.14
19
A
ASN
67
-52.70
104.60
19
A
PRO
150
-69.79
2.74
20
A
PRO
22
-69.77
10.70
20
A
ALA
34
-37.42
-30.63
20
A
GLN
53
-95.33
-62.31
20
A
ASN
67
-56.43
106.34
20
A
SER
87
-52.59
171.06
20
A
ARG
111
-96.05
-71.58
Solution structure of the UAS domain of human UBX domain-containing protein 7
1
N
N
A
PHE
31
A
PHE
31
HELX_P
A
GLN
41
A
GLN
41
1
1
11
A
CYS
57
A
CYS
57
HELX_P
A
ASP
63
A
ASP
63
1
2
7
A
GLU
68
A
GLU
68
HELX_P
A
GLU
76
A
GLU
76
1
3
9
A
GLU
88
A
GLU
88
HELX_P
A
TYR
97
A
TYR
97
1
4
10
A
VAL
124
A
VAL
124
HELX_P
A
GLU
137
A
GLU
137
1
5
14
STRUCTURAL GENOMICS, UNKNOWN FUNCTION
UAS domain, UBX domain-containing protein 7, Protein KIAA0794, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, UNKNOWN FUNCTION
A
PHE
102
A
PHE
102
1
A
PRO
103
A
PRO
103
0.06
A
PHE
102
A
PHE
102
2
A
PRO
103
A
PRO
103
-0.04
A
PHE
102
A
PHE
102
3
A
PRO
103
A
PRO
103
0.04
A
PHE
102
A
PHE
102
4
A
PRO
103
A
PRO
103
0.08
A
PHE
102
A
PHE
102
5
A
PRO
103
A
PRO
103
0.05
A
PHE
102
A
PHE
102
6
A
PRO
103
A
PRO
103
0.07
A
PHE
102
A
PHE
102
7
A
PRO
103
A
PRO
103
0.02
A
PHE
102
A
PHE
102
8
A
PRO
103
A
PRO
103
0.05
A
PHE
102
A
PHE
102
9
A
PRO
103
A
PRO
103
0.02
A
PHE
102
A
PHE
102
10
A
PRO
103
A
PRO
103
0.12
A
PHE
102
A
PHE
102
11
A
PRO
103
A
PRO
103
-0.05
A
PHE
102
A
PHE
102
12
A
PRO
103
A
PRO
103
0.02
A
PHE
102
A
PHE
102
13
A
PRO
103
A
PRO
103
0.00
A
PHE
102
A
PHE
102
14
A
PRO
103
A
PRO
103
0.04
A
PHE
102
A
PHE
102
15
A
PRO
103
A
PRO
103
-0.04
A
PHE
102
A
PHE
102
16
A
PRO
103
A
PRO
103
0.02
A
PHE
102
A
PHE
102
17
A
PRO
103
A
PRO
103
0.09
A
PHE
102
A
PHE
102
18
A
PRO
103
A
PRO
103
-0.02
A
PHE
102
A
PHE
102
19
A
PRO
103
A
PRO
103
0.05
A
PHE
102
A
PHE
102
20
A
PRO
103
A
PRO
103
-0.06
UBXD7_HUMAN
UNP
1
131
O94888
131
270
2DLX
8
147
O94888
A
1
8
147
1
cloning artifact
GLY
1
2DLX
A
O94888
UNP
1
1
cloning artifact
SER
2
2DLX
A
O94888
UNP
2
1
cloning artifact
SER
3
2DLX
A
O94888
UNP
3
1
cloning artifact
GLY
4
2DLX
A
O94888
UNP
4
1
cloning artifact
SER
5
2DLX
A
O94888
UNP
5
1
cloning artifact
SER
6
2DLX
A
O94888
UNP
6
1
cloning artifact
GLY
7
2DLX
A
O94888
UNP
7
1
cloning artifact
SER
148
2DLX
A
O94888
UNP
148
1
cloning artifact
GLY
149
2DLX
A
O94888
UNP
149
1
cloning artifact
PRO
150
2DLX
A
O94888
UNP
150
1
cloning artifact
SER
151
2DLX
A
O94888
UNP
151
1
cloning artifact
SER
152
2DLX
A
O94888
UNP
152
1
cloning artifact
GLY
153
2DLX
A
O94888
UNP
153
4
parallel
anti-parallel
anti-parallel
A
PHE
78
A
PHE
78
A
TYR
84
A
TYR
84
A
TRP
44
A
TRP
44
A
GLN
50
A
GLN
50
A
TYR
104
A
TYR
104
A
LEU
108
A
LEU
108
A
VAL
117
A
VAL
117
A
TRP
119
A
TRP
119