1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Zhang, H.P. Nagasima, T. Hayashi, F. Yokoyama, S. RIKEN Structural Genomics/Proteomics Initiative (RSGI) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking to be published 0353 Solution structure of the UAS domain of human UBX domain-containing protein 7 10.2210/pdb2dlx/pdb pdb_00002dlx 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 17337.371 UBX domain-containing protein 7 UAS domain 1 man polymer no no GSSGSSGIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIF WQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEWHQLDVSSFLDQVTGFLGEHGQLDGLSSSSGPSSG GSSGSSGIDKKLTTLADLFRPPIDLMHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIF WQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEWHQLDVSSFLDQVTGFLGEHGQLDGLSSSSGPSSG A hsk002000776.3 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo sample cell free protein synthesis UBXD7, KIAA0794 9606 Homo sapiens Cell free synthesis PLASMID P050719-12 RIKEN Structural Genomics/Proteomics Initiative RSGI NPPSFA, National Project on Protein Structural and Functional Analyses database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2006-10-20 1 1 2008-04-30 1 2 2011-07-13 1 3 2022-03-09 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _struct_ref_seq_dif.details HELIX Determination method: Author determined Y PDBJ Y PDBJ 2006-04-20 REL spectrometer_id 1 for 3D_15N_separated_NOESY; spectrometer_id 2 for 3D_13C_separated_NOESY target function, structures with the lowest energy, structures with the least restraint violations 100 20 3D_15N-separated_NOESY 3D_13C-separated_NOESY 120mM 7.0 ambient 298 K torsion angle dynamics 1 lowest energy 0.45 mM 13C, 15N-labeled protein; 20mM d-Tris-HCl(pH7.0); 100mM NaCl; 1mM d-DTT; 0.02%NaN3, 90%H2O; 10%D2O 90% H2O/10% D2O Varian collection VNMR 6.1C Delaglio, F. processing NMRPipe 20031121 Johnson,B.A. data analysis NMRView 5.04 Kobayashi,N. data analysis KUJIRA 0.93191 Guntent,P. structure solution CYANA 2.0.17 Guntent,P. refinement CYANA 2.0.17 800 Varian INOVA 900 Varian INOVA GLY 1 n 1 GLY 1 A SER 2 n 2 SER 2 A SER 3 n 3 SER 3 A GLY 4 n 4 GLY 4 A SER 5 n 5 SER 5 A SER 6 n 6 SER 6 A GLY 7 n 7 GLY 7 A ILE 8 n 8 ILE 8 A ASP 9 n 9 ASP 9 A LYS 10 n 10 LYS 10 A LYS 11 n 11 LYS 11 A LEU 12 n 12 LEU 12 A THR 13 n 13 THR 13 A THR 14 n 14 THR 14 A LEU 15 n 15 LEU 15 A ALA 16 n 16 ALA 16 A ASP 17 n 17 ASP 17 A LEU 18 n 18 LEU 18 A PHE 19 n 19 PHE 19 A ARG 20 n 20 ARG 20 A PRO 21 n 21 PRO 21 A PRO 22 n 22 PRO 22 A ILE 23 n 23 ILE 23 A ASP 24 n 24 ASP 24 A LEU 25 n 25 LEU 25 A MET 26 n 26 MET 26 A HIS 27 n 27 HIS 27 A LYS 28 n 28 LYS 28 A GLY 29 n 29 GLY 29 A SER 30 n 30 SER 30 A PHE 31 n 31 PHE 31 A GLU 32 n 32 GLU 32 A THR 33 n 33 THR 33 A ALA 34 n 34 ALA 34 A LYS 35 n 35 LYS 35 A GLU 36 n 36 GLU 36 A CYS 37 n 37 CYS 37 A GLY 38 n 38 GLY 38 A GLN 39 n 39 GLN 39 A MET 40 n 40 MET 40 A GLN 41 n 41 GLN 41 A ASN 42 n 42 ASN 42 A LYS 43 n 43 LYS 43 A TRP 44 n 44 TRP 44 A LEU 45 n 45 LEU 45 A MET 46 n 46 MET 46 A ILE 47 n 47 ILE 47 A ASN 48 n 48 ASN 48 A ILE 49 n 49 ILE 49 A GLN 50 n 50 GLN 50 A ASN 51 n 51 ASN 51 A VAL 52 n 52 VAL 52 A GLN 53 n 53 GLN 53 A ASP 54 n 54 ASP 54 A PHE 55 n 55 PHE 55 A ALA 56 n 56 ALA 56 A CYS 57 n 57 CYS 57 A GLN 58 n 58 GLN 58 A CYS 59 n 59 CYS 59 A LEU 60 n 60 LEU 60 A ASN 61 n 61 ASN 61 A ARG 62 n 62 ARG 62 A ASP 63 n 63 ASP 63 A VAL 64 n 64 VAL 64 A TRP 65 n 65 TRP 65 A SER 66 n 66 SER 66 A ASN 67 n 67 ASN 67 A GLU 68 n 68 GLU 68 A ALA 69 n 69 ALA 69 A VAL 70 n 70 VAL 70 A LYS 71 n 71 LYS 71 A ASN 72 n 72 ASN 72 A ILE 73 n 73 ILE 73 A ILE 74 n 74 ILE 74 A ARG 75 n 75 ARG 75 A GLU 76 n 76 GLU 76 A HIS 77 n 77 HIS 77 A PHE 78 n 78 PHE 78 A ILE 79 n 79 ILE 79 A PHE 80 n 80 PHE 80 A TRP 81 n 81 TRP 81 A GLN 82 n 82 GLN 82 A VAL 83 n 83 VAL 83 A TYR 84 n 84 TYR 84 A HIS 85 n 85 HIS 85 A ASP 86 n 86 ASP 86 A SER 87 n 87 SER 87 A GLU 88 n 88 GLU 88 A GLU 89 n 89 GLU 89 A GLY 90 n 90 GLY 90 A GLN 91 n 91 GLN 91 A ARG 92 n 92 ARG 92 A TYR 93 n 93 TYR 93 A ILE 94 n 94 ILE 94 A GLN 95 n 95 GLN 95 A PHE 96 n 96 PHE 96 A TYR 97 n 97 TYR 97 A LYS 98 n 98 LYS 98 A LEU 99 n 99 LEU 99 A GLY 100 n 100 GLY 100 A ASP 101 n 101 ASP 101 A PHE 102 n 102 PHE 102 A PRO 103 n 103 PRO 103 A TYR 104 n 104 TYR 104 A VAL 105 n 105 VAL 105 A SER 106 n 106 SER 106 A ILE 107 n 107 ILE 107 A LEU 108 n 108 LEU 108 A ASP 109 n 109 ASP 109 A PRO 110 n 110 PRO 110 A ARG 111 n 111 ARG 111 A THR 112 n 112 THR 112 A GLY 113 n 113 GLY 113 A GLN 114 n 114 GLN 114 A LYS 115 n 115 LYS 115 A LEU 116 n 116 LEU 116 A VAL 117 n 117 VAL 117 A GLU 118 n 118 GLU 118 A TRP 119 n 119 TRP 119 A HIS 120 n 120 HIS 120 A GLN 121 n 121 GLN 121 A LEU 122 n 122 LEU 122 A ASP 123 n 123 ASP 123 A VAL 124 n 124 VAL 124 A SER 125 n 125 SER 125 A SER 126 n 126 SER 126 A PHE 127 n 127 PHE 127 A LEU 128 n 128 LEU 128 A ASP 129 n 129 ASP 129 A GLN 130 n 130 GLN 130 A VAL 131 n 131 VAL 131 A THR 132 n 132 THR 132 A GLY 133 n 133 GLY 133 A PHE 134 n 134 PHE 134 A LEU 135 n 135 LEU 135 A GLY 136 n 136 GLY 136 A GLU 137 n 137 GLU 137 A HIS 138 n 138 HIS 138 A GLY 139 n 139 GLY 139 A GLN 140 n 140 GLN 140 A LEU 141 n 141 LEU 141 A ASP 142 n 142 ASP 142 A GLY 143 n 143 GLY 143 A LEU 144 n 144 LEU 144 A SER 145 n 145 SER 145 A SER 146 n 146 SER 146 A SER 147 n 147 SER 147 A SER 148 n 148 SER 148 A GLY 149 n 149 GLY 149 A PRO 150 n 150 PRO 150 A SER 151 n 151 SER 151 A SER 152 n 152 SER 152 A GLY 153 n 153 GLY 153 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O TRP 81 A O TRP 81 A N ASN 48 A N ASN 48 A N LEU 45 A N LEU 45 A O LEU 108 A O LEU 108 A N VAL 105 A N VAL 105 A O TRP 119 A O TRP 119 1 A PHE 19 -38.48 -25.81 1 A PRO 22 -69.72 80.00 1 A GLN 58 -37.37 -35.72 1 A VAL 64 -49.49 -70.24 1 A SER 66 -37.79 -34.64 1 A ASN 67 -52.34 107.29 1 A PHE 80 -56.45 108.22 1 A SER 87 -54.81 171.97 1 A TYR 93 -35.61 -39.51 1 A LEU 141 -55.79 171.23 2 A ASP 17 -52.26 107.00 2 A PRO 22 -69.74 5.97 2 A ALA 56 -34.10 -39.51 2 A ASN 61 -49.13 -17.05 2 A VAL 64 -61.80 -71.63 2 A GLU 76 -98.04 -68.25 2 A PHE 96 -42.61 -70.78 2 A LEU 144 -52.79 107.29 3 A ALA 56 -97.93 -68.68 3 A PHE 80 -57.32 102.76 3 A SER 87 -52.15 173.31 3 A LYS 115 -55.57 108.74 3 A HIS 138 -91.61 -60.12 3 A LEU 141 -58.86 171.32 3 A PRO 150 -69.71 90.47 4 A ASP 17 -95.47 -65.16 4 A PRO 22 -69.82 0.56 4 A ILE 23 35.14 32.01 4 A TRP 44 -58.28 170.80 4 A LEU 122 -57.74 177.68 4 A PRO 150 -69.79 86.88 5 A THR 14 -94.92 -60.24 5 A LEU 18 -64.64 -70.06 5 A PRO 22 -69.77 97.94 5 A ALA 34 -35.61 -30.53 5 A ASN 67 -58.55 109.55 5 A PHE 80 -58.69 104.72 5 A PRO 150 -69.78 -177.47 6 A PRO 22 -69.78 97.39 6 A ALA 34 -34.77 -31.79 6 A ASN 61 -46.02 -19.98 6 A VAL 64 -53.31 -71.84 6 A PRO 150 -69.82 7.84 7 A PRO 22 -69.75 2.65 7 A ILE 23 38.79 31.98 7 A MET 26 -53.08 106.30 8 A PRO 22 -69.75 0.15 8 A GLU 89 -39.22 -39.47 8 A ARG 111 -93.73 -60.08 8 A LEU 116 -97.96 -72.65 8 A LEU 141 -55.99 170.80 8 A PRO 150 -69.74 1.67 9 A ALA 16 -95.10 -67.94 9 A ILE 23 -39.10 -28.86 9 A ALA 56 -32.17 -37.92 9 A VAL 64 -56.04 -70.30 9 A ASN 67 -57.39 109.81 9 A LEU 141 -53.20 175.61 10 A PRO 22 -69.83 83.51 10 A GLN 53 -93.38 -67.98 10 A ASP 54 -58.02 103.01 10 A ASP 142 -96.21 -60.02 11 A ASP 17 -53.73 177.60 11 A PRO 22 -69.69 86.22 11 A ALA 34 -38.07 -28.00 11 A TRP 44 -58.17 177.83 11 A ASP 54 -58.91 176.78 11 A ALA 56 -35.45 -38.56 11 A ASN 67 -53.71 109.71 11 A GLU 76 -90.60 -68.47 12 A PRO 22 -69.82 90.70 12 A TRP 44 -55.15 172.39 12 A PRO 110 -69.75 5.44 12 A LEU 116 -95.63 -72.39 12 A HIS 138 -94.45 -62.67 12 A SER 146 -58.43 105.68 13 A ILE 23 38.31 32.07 13 A GLU 76 -90.05 -66.17 13 A PHE 96 -46.74 -71.03 13 A PRO 150 -69.83 -177.84 14 A PRO 22 -69.82 5.07 14 A ALA 34 -34.98 -31.78 14 A VAL 64 -56.04 -70.14 14 A PHE 80 -52.06 105.00 14 A GLU 88 -32.64 -38.09 14 A LYS 115 -58.01 107.36 14 A PRO 150 -69.75 2.95 15 A ASP 17 -53.28 105.21 15 A LEU 18 -51.98 178.79 15 A PRO 22 -69.73 17.82 15 A ILE 23 -33.50 -39.49 15 A PHE 80 -56.32 106.62 15 A ARG 111 -93.55 -76.62 15 A LEU 144 -92.82 -61.27 15 A PRO 150 -69.71 3.05 16 A PRO 22 -69.73 14.19 16 A ILE 23 -36.71 -32.78 16 A ALA 56 -47.02 -18.87 16 A VAL 64 -48.98 -72.40 16 A ASN 67 -54.63 108.88 16 A PHE 80 -56.87 108.95 16 A GLN 140 -94.16 -68.34 17 A PRO 22 -69.82 87.03 17 A MET 26 -53.52 108.91 17 A VAL 52 -38.28 -38.62 17 A GLN 53 -56.07 109.51 17 A ASN 61 -46.06 -19.17 17 A VAL 64 -47.61 -70.15 17 A SER 66 -38.98 -34.44 17 A ASN 67 -53.20 105.33 17 A ASN 72 -48.84 -19.62 17 A SER 87 -58.18 170.28 18 A PRO 22 -69.78 5.10 18 A ILE 23 -35.74 -34.48 18 A SER 30 -66.68 -178.24 18 A ASN 67 -51.90 103.45 18 A GLU 76 -94.02 -64.44 19 A PRO 22 -69.78 14.01 19 A VAL 64 -50.14 -71.14 19 A ASN 67 -52.70 104.60 19 A PRO 150 -69.79 2.74 20 A PRO 22 -69.77 10.70 20 A ALA 34 -37.42 -30.63 20 A GLN 53 -95.33 -62.31 20 A ASN 67 -56.43 106.34 20 A SER 87 -52.59 171.06 20 A ARG 111 -96.05 -71.58 Solution structure of the UAS domain of human UBX domain-containing protein 7 1 N N A PHE 31 A PHE 31 HELX_P A GLN 41 A GLN 41 1 1 11 A CYS 57 A CYS 57 HELX_P A ASP 63 A ASP 63 1 2 7 A GLU 68 A GLU 68 HELX_P A GLU 76 A GLU 76 1 3 9 A GLU 88 A GLU 88 HELX_P A TYR 97 A TYR 97 1 4 10 A VAL 124 A VAL 124 HELX_P A GLU 137 A GLU 137 1 5 14 STRUCTURAL GENOMICS, UNKNOWN FUNCTION UAS domain, UBX domain-containing protein 7, Protein KIAA0794, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, UNKNOWN FUNCTION A PHE 102 A PHE 102 1 A PRO 103 A PRO 103 0.06 A PHE 102 A PHE 102 2 A PRO 103 A PRO 103 -0.04 A PHE 102 A PHE 102 3 A PRO 103 A PRO 103 0.04 A PHE 102 A PHE 102 4 A PRO 103 A PRO 103 0.08 A PHE 102 A PHE 102 5 A PRO 103 A PRO 103 0.05 A PHE 102 A PHE 102 6 A PRO 103 A PRO 103 0.07 A PHE 102 A PHE 102 7 A PRO 103 A PRO 103 0.02 A PHE 102 A PHE 102 8 A PRO 103 A PRO 103 0.05 A PHE 102 A PHE 102 9 A PRO 103 A PRO 103 0.02 A PHE 102 A PHE 102 10 A PRO 103 A PRO 103 0.12 A PHE 102 A PHE 102 11 A PRO 103 A PRO 103 -0.05 A PHE 102 A PHE 102 12 A PRO 103 A PRO 103 0.02 A PHE 102 A PHE 102 13 A PRO 103 A PRO 103 0.00 A PHE 102 A PHE 102 14 A PRO 103 A PRO 103 0.04 A PHE 102 A PHE 102 15 A PRO 103 A PRO 103 -0.04 A PHE 102 A PHE 102 16 A PRO 103 A PRO 103 0.02 A PHE 102 A PHE 102 17 A PRO 103 A PRO 103 0.09 A PHE 102 A PHE 102 18 A PRO 103 A PRO 103 -0.02 A PHE 102 A PHE 102 19 A PRO 103 A PRO 103 0.05 A PHE 102 A PHE 102 20 A PRO 103 A PRO 103 -0.06 UBXD7_HUMAN UNP 1 131 O94888 131 270 2DLX 8 147 O94888 A 1 8 147 1 cloning artifact GLY 1 2DLX A O94888 UNP 1 1 cloning artifact SER 2 2DLX A O94888 UNP 2 1 cloning artifact SER 3 2DLX A O94888 UNP 3 1 cloning artifact GLY 4 2DLX A O94888 UNP 4 1 cloning artifact SER 5 2DLX A O94888 UNP 5 1 cloning artifact SER 6 2DLX A O94888 UNP 6 1 cloning artifact GLY 7 2DLX A O94888 UNP 7 1 cloning artifact SER 148 2DLX A O94888 UNP 148 1 cloning artifact GLY 149 2DLX A O94888 UNP 149 1 cloning artifact PRO 150 2DLX A O94888 UNP 150 1 cloning artifact SER 151 2DLX A O94888 UNP 151 1 cloning artifact SER 152 2DLX A O94888 UNP 152 1 cloning artifact GLY 153 2DLX A O94888 UNP 153 4 parallel anti-parallel anti-parallel A PHE 78 A PHE 78 A TYR 84 A TYR 84 A TRP 44 A TRP 44 A GLN 50 A GLN 50 A TYR 104 A TYR 104 A LEU 108 A LEU 108 A VAL 117 A VAL 117 A TRP 119 A TRP 119