1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Nagashima, T. Hayashi, F. Yokoyama, S. RIKEN Structural Genomics/Proteomics Initiative (RSGI) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be Published 0353 Solution structure of the first ig domain of human palladin 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 11923.438 palladin IG 1 man polymer no no GSSGSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGN YTIMAANPQGRISCTGRLMVQAVNSGPSSG GSSGSSGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGN YTIMAANPQGRISCTGRLMVQAVNSGPSSG A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo sample Cell-free protein synthesis KIAA0992 9606 Homo sapiens plasmid P050711-06 RIKEN Structural Genomics/Proteomics Initiative RSGI NPPSFA, National Project on Protein Structural and Functional Analyses repository Initial release Version format compliance Version format compliance 1 0 2007-04-24 1 1 2008-04-30 1 2 2011-07-13 Y PDBJ Y PDBJ 2006-04-20 REL REL target function, structures with the lowest energy 100 20 3D_15N-separated_NOESY 3D_13C-separated_NOESY 120mM 7.0 ambient 293 K torsion angle dynamics 1 lowest energy 0.76mM uniformly 13C and 15N labeled protein; 20mM TrisHCl, 100mM NaCl, 1mM DTT, 0.02% NaN3, 10% D2O, 90% H2O 10% D2O, 90% H2O Varian collection VNMR 6.1C Delaglio, F. processing NMRPipe 20020425 Johnson, B.A. data analysis NMRView 5.0.4 Kobayashi, N. data analysis Kujira 0.9318 Guntert, P. structure solution CYANA 2.0.17 Guntert, P. refinement CYANA 2.0.17 800 Varian INOVA GLY 1 n 1 GLY 1 A SER 2 n 2 SER 2 A SER 3 n 3 SER 3 A GLY 4 n 4 GLY 4 A SER 5 n 5 SER 5 A SER 6 n 6 SER 6 A GLY 7 n 7 GLY 7 A ALA 8 n 8 ALA 8 A PRO 9 n 9 PRO 9 A PHE 10 n 10 PHE 10 A PHE 11 n 11 PHE 11 A GLU 12 n 12 GLU 12 A MET 13 n 13 MET 13 A LYS 14 n 14 LYS 14 A LEU 15 n 15 LEU 15 A LYS 16 n 16 LYS 16 A HIS 17 n 17 HIS 17 A TYR 18 n 18 TYR 18 A LYS 19 n 19 LYS 19 A ILE 20 n 20 ILE 20 A PHE 21 n 21 PHE 21 A GLU 22 n 22 GLU 22 A GLY 23 n 23 GLY 23 A MET 24 n 24 MET 24 A PRO 25 n 25 PRO 25 A VAL 26 n 26 VAL 26 A THR 27 n 27 THR 27 A PHE 28 n 28 PHE 28 A THR 29 n 29 THR 29 A CYS 30 n 30 CYS 30 A ARG 31 n 31 ARG 31 A VAL 32 n 32 VAL 32 A ALA 33 n 33 ALA 33 A GLY 34 n 34 GLY 34 A ASN 35 n 35 ASN 35 A PRO 36 n 36 PRO 36 A LYS 37 n 37 LYS 37 A PRO 38 n 38 PRO 38 A LYS 39 n 39 LYS 39 A ILE 40 n 40 ILE 40 A TYR 41 n 41 TYR 41 A TRP 42 n 42 TRP 42 A PHE 43 n 43 PHE 43 A LYS 44 n 44 LYS 44 A ASP 45 n 45 ASP 45 A GLY 46 n 46 GLY 46 A LYS 47 n 47 LYS 47 A GLN 48 n 48 GLN 48 A ILE 49 n 49 ILE 49 A SER 50 n 50 SER 50 A PRO 51 n 51 PRO 51 A LYS 52 n 52 LYS 52 A SER 53 n 53 SER 53 A ASP 54 n 54 ASP 54 A HIS 55 n 55 HIS 55 A TYR 56 n 56 TYR 56 A THR 57 n 57 THR 57 A ILE 58 n 58 ILE 58 A GLN 59 n 59 GLN 59 A ARG 60 n 60 ARG 60 A ASP 61 n 61 ASP 61 A LEU 62 n 62 LEU 62 A ASP 63 n 63 ASP 63 A GLY 64 n 64 GLY 64 A THR 65 n 65 THR 65 A CYS 66 n 66 CYS 66 A SER 67 n 67 SER 67 A LEU 68 n 68 LEU 68 A HIS 69 n 69 HIS 69 A THR 70 n 70 THR 70 A THR 71 n 71 THR 71 A ALA 72 n 72 ALA 72 A SER 73 n 73 SER 73 A THR 74 n 74 THR 74 A LEU 75 n 75 LEU 75 A ASP 76 n 76 ASP 76 A ASP 77 n 77 ASP 77 A ASP 78 n 78 ASP 78 A GLY 79 n 79 GLY 79 A ASN 80 n 80 ASN 80 A TYR 81 n 81 TYR 81 A THR 82 n 82 THR 82 A ILE 83 n 83 ILE 83 A MET 84 n 84 MET 84 A ALA 85 n 85 ALA 85 A ALA 86 n 86 ALA 86 A ASN 87 n 87 ASN 87 A PRO 88 n 88 PRO 88 A GLN 89 n 89 GLN 89 A GLY 90 n 90 GLY 90 A ARG 91 n 91 ARG 91 A ILE 92 n 92 ILE 92 A SER 93 n 93 SER 93 A CYS 94 n 94 CYS 94 A THR 95 n 95 THR 95 A GLY 96 n 96 GLY 96 A ARG 97 n 97 ARG 97 A LEU 98 n 98 LEU 98 A MET 99 n 99 MET 99 A VAL 100 n 100 VAL 100 A GLN 101 n 101 GLN 101 A ALA 102 n 102 ALA 102 A VAL 103 n 103 VAL 103 A ASN 104 n 104 ASN 104 A SER 105 n 105 SER 105 A GLY 106 n 106 GLY 106 A PRO 107 n 107 PRO 107 A SER 108 n 108 SER 108 A SER 109 n 109 SER 109 A GLY 110 n 110 GLY 110 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 20 A N ILE 20 A O MET 99 A O MET 99 A N PHE 28 A N PHE 28 A O LEU 68 A O LEU 68 A O HIS 69 A O HIS 69 A N THR 57 A N THR 57 A N PHE 43 A N PHE 43 A O THR 82 A O THR 82 A N ILE 83 A N ILE 83 A O CYS 94 A O CYS 94 1 A LYS 37 -34.96 97.90 1 A ASP 45 34.62 48.85 1 A LYS 52 -92.11 34.97 1 A ASP 78 -47.55 163.04 1 A PRO 88 -69.76 4.57 1 A SER 109 -48.55 96.30 2 A LYS 14 -46.22 154.14 2 A LYS 37 -32.21 99.44 2 A ASP 63 -98.99 32.21 2 A PRO 88 -69.72 4.33 2 A SER 109 -174.92 112.12 3 A SER 2 -93.33 41.91 3 A MET 13 -119.78 69.98 3 A LYS 14 -39.56 134.51 3 A GLU 22 -39.52 125.77 3 A LYS 37 -35.13 106.52 3 A ASP 45 39.87 30.07 3 A LYS 52 -83.29 35.00 3 A PRO 88 -69.75 4.09 4 A LYS 14 -47.85 156.93 4 A SER 53 -36.20 142.09 4 A ASP 78 -39.73 158.58 4 A PRO 88 -69.73 4.92 5 A LYS 37 -40.15 107.48 5 A ASP 45 35.42 35.06 5 A PRO 88 -69.79 2.44 6 A LYS 37 -35.38 99.64 6 A SER 53 -57.94 97.33 6 A ASP 54 -36.48 -38.45 6 A ASP 78 -44.77 160.87 6 A PRO 88 -69.76 4.42 6 A SER 105 -170.53 139.23 7 A SER 3 -95.22 57.46 7 A PRO 36 -69.79 -171.06 7 A LYS 37 -53.53 108.01 7 A ASP 45 37.09 29.33 7 A LYS 52 -84.30 34.06 7 A ASP 54 -34.52 -33.02 7 A PRO 88 -69.72 4.54 7 A SER 109 37.30 42.48 8 A SER 2 -174.04 112.17 8 A PRO 36 -69.81 -177.51 8 A LYS 37 -46.11 109.65 8 A ASP 45 37.37 28.63 8 A LYS 52 -97.08 37.72 8 A SER 53 -55.30 -174.32 8 A PRO 88 -69.75 3.56 9 A LYS 14 -46.37 164.40 9 A LYS 37 -32.31 111.53 9 A LYS 52 -90.08 39.55 9 A PRO 88 -69.85 5.41 9 A ASN 104 -107.94 75.03 9 A SER 108 -126.73 -50.00 10 A LYS 14 -44.00 152.86 10 A LEU 15 -56.47 101.71 10 A LYS 37 -39.71 122.61 10 A ASP 45 41.07 27.77 10 A SER 53 -38.80 94.63 10 A PRO 88 -69.76 4.95 10 A ALA 102 -55.62 107.71 10 A PRO 107 -69.74 1.47 11 A LYS 14 -43.08 164.03 11 A PRO 36 -69.76 -175.53 11 A ASP 45 38.07 31.10 11 A LYS 52 -90.80 31.34 11 A ASP 78 -45.62 155.87 11 A PRO 88 -69.80 4.86 12 A LYS 14 -45.70 156.77 12 A PRO 36 -69.74 -176.18 12 A LYS 37 -53.90 109.67 12 A SER 53 -36.37 128.00 12 A PRO 88 -69.67 4.34 13 A LYS 14 -49.79 154.76 13 A LYS 37 -42.91 103.29 13 A SER 53 -67.21 96.86 13 A PRO 88 -69.76 6.17 14 A LYS 14 -48.99 170.65 14 A HIS 55 -44.43 -70.06 14 A ASP 63 -84.27 33.89 14 A LEU 75 -35.39 -37.45 14 A ASP 77 -37.46 -28.86 14 A PRO 88 -69.76 4.02 15 A SER 2 -58.12 93.23 15 A LYS 37 -34.07 136.64 15 A ASP 45 43.34 28.84 15 A HIS 55 -101.72 -71.78 15 A LEU 75 -34.28 -38.43 15 A PRO 88 -69.75 4.87 15 A SER 109 -127.43 -60.46 16 A ASP 45 34.55 49.11 16 A LYS 52 -86.84 39.48 16 A LEU 75 -37.30 -35.34 16 A ASP 78 -38.37 149.66 16 A PRO 88 -69.77 4.54 16 A SER 105 -171.59 116.31 17 A GLU 22 -35.38 128.41 17 A PRO 36 -69.78 -174.61 17 A ASP 78 -46.40 165.69 17 A PRO 88 -69.79 5.08 17 A PRO 107 -69.80 1.74 18 A SER 3 -90.53 44.78 18 A LYS 14 -48.46 161.06 18 A ASP 45 47.04 25.71 18 A PRO 88 -69.83 4.20 19 A ASP 45 37.95 40.98 19 A LYS 52 -89.85 33.78 19 A PRO 88 -69.76 4.75 19 A VAL 103 -114.96 51.76 19 A SER 105 -131.41 -41.05 20 A LEU 15 -34.93 119.37 20 A LEU 75 -39.07 -37.49 20 A PRO 88 -69.80 4.70 palladin Solution structure of the first ig domain of human palladin 1 N N PROTEIN BINDING beta-sandwich, KIAA0992, myopalladin, actin-associated scaffold, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, PROTEIN BINDING A ASN 35 A ASN 35 1 A PRO 36 A PRO 36 -0.03 A ASN 35 A ASN 35 2 A PRO 36 A PRO 36 -0.07 A ASN 35 A ASN 35 3 A PRO 36 A PRO 36 -0.08 A ASN 35 A ASN 35 4 A PRO 36 A PRO 36 0.00 A ASN 35 A ASN 35 5 A PRO 36 A PRO 36 -0.04 A ASN 35 A ASN 35 6 A PRO 36 A PRO 36 -0.06 A ASN 35 A ASN 35 7 A PRO 36 A PRO 36 -0.07 A ASN 35 A ASN 35 8 A PRO 36 A PRO 36 -0.01 A ASN 35 A ASN 35 9 A PRO 36 A PRO 36 -0.02 A ASN 35 A ASN 35 10 A PRO 36 A PRO 36 -0.06 A ASN 35 A ASN 35 11 A PRO 36 A PRO 36 -0.04 A ASN 35 A ASN 35 12 A PRO 36 A PRO 36 -0.10 A ASN 35 A ASN 35 13 A PRO 36 A PRO 36 -0.02 A ASN 35 A ASN 35 14 A PRO 36 A PRO 36 -0.06 A ASN 35 A ASN 35 15 A PRO 36 A PRO 36 -0.02 A ASN 35 A ASN 35 16 A PRO 36 A PRO 36 -0.07 A ASN 35 A ASN 35 17 A PRO 36 A PRO 36 -0.03 A ASN 35 A ASN 35 18 A PRO 36 A PRO 36 -0.03 A ASN 35 A ASN 35 19 A PRO 36 A PRO 36 -0.04 A ASN 35 A ASN 35 20 A PRO 36 A PRO 36 -0.04 NP_057165 GB 1 776 21361585 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAAN PQGRISCTGRLMVQAVN 776 872 2DM2 8 104 21361585 A 1 8 104 1 CLONING ARTIFACT GLY 1 2DM2 A 21361585 GB 1 1 CLONING ARTIFACT SER 2 2DM2 A 21361585 GB 2 1 CLONING ARTIFACT SER 3 2DM2 A 21361585 GB 3 1 CLONING ARTIFACT GLY 4 2DM2 A 21361585 GB 4 1 CLONING ARTIFACT SER 5 2DM2 A 21361585 GB 5 1 CLONING ARTIFACT SER 6 2DM2 A 21361585 GB 6 1 CLONING ARTIFACT GLY 7 2DM2 A 21361585 GB 7 1 CLONING ARTIFACT SER 105 2DM2 A 21361585 GB 105 1 CLONING ARTIFACT GLY 106 2DM2 A 21361585 GB 106 1 CLONING ARTIFACT PRO 107 2DM2 A 21361585 GB 107 1 CLONING ARTIFACT SER 108 2DM2 A 21361585 GB 108 1 CLONING ARTIFACT SER 109 2DM2 A 21361585 GB 109 1 CLONING ARTIFACT GLY 110 2DM2 A 21361585 GB 110 2 3 3 parallel anti-parallel anti-parallel anti-parallel anti-parallel A TYR 18 A TYR 18 A PHE 21 A PHE 21 A LEU 98 A LEU 98 A GLN 101 A GLN 101 A VAL 26 A VAL 26 A ARG 31 A ARG 31 A THR 65 A THR 65 A THR 70 A THR 70 A TYR 56 A TYR 56 A ARG 60 A ARG 60 A LYS 39 A LYS 39 A PHE 43 A PHE 43 A THR 82 A THR 82 A ALA 86 A ALA 86 A ILE 92 A ILE 92 A CYS 94 A CYS 94